Multiple sequence alignment - TraesCS4A01G295500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G295500 chr4A 100.000 2630 0 0 1 2630 596168246 596165617 0.000000e+00 4857.0
1 TraesCS4A01G295500 chr4A 77.564 156 30 5 1360 1512 508357913 508357760 3.610000e-14 89.8
2 TraesCS4A01G295500 chr4A 83.333 96 14 2 1418 1512 508494185 508494091 1.300000e-13 87.9
3 TraesCS4A01G295500 chr4D 89.742 1862 105 33 728 2536 7419579 7421407 0.000000e+00 2302.0
4 TraesCS4A01G295500 chr4D 88.889 531 56 3 1 528 297101887 297102417 0.000000e+00 651.0
5 TraesCS4A01G295500 chr4B 87.746 1069 62 35 729 1775 13297182 13298203 0.000000e+00 1184.0
6 TraesCS4A01G295500 chr4B 89.266 531 53 4 1 528 460784576 460784047 0.000000e+00 662.0
7 TraesCS4A01G295500 chr4B 89.116 441 30 11 2013 2435 13298201 13298641 1.390000e-147 532.0
8 TraesCS4A01G295500 chr4B 78.443 167 32 4 1355 1519 109222761 109222925 3.580000e-19 106.0
9 TraesCS4A01G295500 chr4B 93.548 62 4 0 2531 2592 540315447 540315508 2.790000e-15 93.5
10 TraesCS4A01G295500 chr3D 89.850 532 50 4 1 528 610095247 610094716 0.000000e+00 680.0
11 TraesCS4A01G295500 chr3D 85.083 181 24 3 529 708 365354406 365354228 5.780000e-42 182.0
12 TraesCS4A01G295500 chr3D 84.358 179 24 1 530 708 254888954 254888780 3.480000e-39 172.0
13 TraesCS4A01G295500 chr3D 83.978 181 25 4 529 708 85840110 85840287 1.250000e-38 171.0
14 TraesCS4A01G295500 chrUn 90.366 519 41 4 12 528 282688560 282688049 0.000000e+00 673.0
15 TraesCS4A01G295500 chr2A 90.366 519 41 4 12 528 16570186 16569675 0.000000e+00 673.0
16 TraesCS4A01G295500 chr2A 86.111 180 21 2 529 708 444412977 444412802 9.610000e-45 191.0
17 TraesCS4A01G295500 chr2A 85.000 180 24 1 529 708 659154022 659153846 2.080000e-41 180.0
18 TraesCS4A01G295500 chr2A 98.387 62 1 0 2531 2592 751613259 751613198 2.770000e-20 110.0
19 TraesCS4A01G295500 chr2A 96.774 62 2 0 2531 2592 2331711 2331772 1.290000e-18 104.0
20 TraesCS4A01G295500 chr2A 95.161 62 3 0 2531 2592 751196818 751196757 5.990000e-17 99.0
21 TraesCS4A01G295500 chr2A 93.548 62 4 0 2531 2592 116175060 116175121 2.790000e-15 93.5
22 TraesCS4A01G295500 chr2A 100.000 42 0 0 2589 2630 2331836 2331877 7.800000e-11 78.7
23 TraesCS4A01G295500 chr2A 100.000 42 0 0 2589 2630 751613135 751613094 7.800000e-11 78.7
24 TraesCS4A01G295500 chr6D 89.286 532 47 8 1 528 379709670 379710195 0.000000e+00 658.0
25 TraesCS4A01G295500 chr7B 88.785 535 55 5 1 531 293068247 293067714 0.000000e+00 651.0
26 TraesCS4A01G295500 chr5D 89.362 517 51 3 13 528 17120072 17119559 0.000000e+00 647.0
27 TraesCS4A01G295500 chr5D 88.534 532 57 4 1 528 135752741 135753272 2.210000e-180 641.0
28 TraesCS4A01G295500 chr5A 87.778 180 17 3 529 708 60096349 60096175 3.430000e-49 206.0
29 TraesCS4A01G295500 chr5A 84.444 180 25 1 529 708 483549259 483549083 9.680000e-40 174.0
30 TraesCS4A01G295500 chr7A 87.293 181 17 3 529 708 685404682 685404857 4.440000e-48 202.0
31 TraesCS4A01G295500 chr7A 87.898 157 18 1 549 705 696580474 696580319 1.610000e-42 183.0
32 TraesCS4A01G295500 chr7A 96.774 62 1 1 2531 2592 715784137 715784077 4.630000e-18 102.0
33 TraesCS4A01G295500 chr7A 100.000 42 0 0 2589 2630 715784014 715783973 7.800000e-11 78.7
34 TraesCS4A01G295500 chr1A 98.387 62 1 0 2531 2592 544743220 544743159 2.770000e-20 110.0
35 TraesCS4A01G295500 chr1A 98.387 62 1 0 2531 2592 554931429 554931368 2.770000e-20 110.0
36 TraesCS4A01G295500 chr1A 100.000 42 0 0 2589 2630 554931305 554931264 7.800000e-11 78.7
37 TraesCS4A01G295500 chr6A 100.000 42 0 0 2589 2630 11070349 11070390 7.800000e-11 78.7
38 TraesCS4A01G295500 chr1B 87.879 66 0 3 2531 2592 86748587 86748526 1.310000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G295500 chr4A 596165617 596168246 2629 True 4857 4857 100.000 1 2630 1 chr4A.!!$R3 2629
1 TraesCS4A01G295500 chr4D 7419579 7421407 1828 False 2302 2302 89.742 728 2536 1 chr4D.!!$F1 1808
2 TraesCS4A01G295500 chr4D 297101887 297102417 530 False 651 651 88.889 1 528 1 chr4D.!!$F2 527
3 TraesCS4A01G295500 chr4B 13297182 13298641 1459 False 858 1184 88.431 729 2435 2 chr4B.!!$F3 1706
4 TraesCS4A01G295500 chr4B 460784047 460784576 529 True 662 662 89.266 1 528 1 chr4B.!!$R1 527
5 TraesCS4A01G295500 chr3D 610094716 610095247 531 True 680 680 89.850 1 528 1 chr3D.!!$R3 527
6 TraesCS4A01G295500 chrUn 282688049 282688560 511 True 673 673 90.366 12 528 1 chrUn.!!$R1 516
7 TraesCS4A01G295500 chr2A 16569675 16570186 511 True 673 673 90.366 12 528 1 chr2A.!!$R1 516
8 TraesCS4A01G295500 chr6D 379709670 379710195 525 False 658 658 89.286 1 528 1 chr6D.!!$F1 527
9 TraesCS4A01G295500 chr7B 293067714 293068247 533 True 651 651 88.785 1 531 1 chr7B.!!$R1 530
10 TraesCS4A01G295500 chr5D 17119559 17120072 513 True 647 647 89.362 13 528 1 chr5D.!!$R1 515
11 TraesCS4A01G295500 chr5D 135752741 135753272 531 False 641 641 88.534 1 528 1 chr5D.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 721 0.038166 TGCAAAAATCCTCGAGGCCT 59.962 50.0 27.39 3.86 34.44 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2601 2705 0.109179 CCGGTTGGTTATCACGTCGA 60.109 55.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 152 9.774742 CAAGAATAGATCGGAAAACTAAAAAGG 57.225 33.333 0.00 0.00 0.00 3.11
164 167 1.600023 AAAGGAACCACGCGATCAAA 58.400 45.000 15.93 0.00 0.00 2.69
175 178 1.701545 GCGATCAAAATGACCGGCGA 61.702 55.000 9.30 0.00 33.02 5.54
176 179 0.724549 CGATCAAAATGACCGGCGAA 59.275 50.000 9.30 0.00 27.45 4.70
180 183 1.533731 TCAAAATGACCGGCGAAAGAC 59.466 47.619 9.30 0.00 0.00 3.01
191 195 2.218603 GGCGAAAGACAGAAAACTCCA 58.781 47.619 0.00 0.00 40.66 3.86
198 202 5.659440 AAGACAGAAAACTCCAAAGCAAA 57.341 34.783 0.00 0.00 0.00 3.68
205 209 2.645838 ACTCCAAAGCAAAGCTCAGA 57.354 45.000 0.00 0.00 38.25 3.27
225 229 4.810191 GAGAAAAGACTCTCTAGGGCAA 57.190 45.455 0.00 0.00 39.08 4.52
227 231 5.096443 AGAAAAGACTCTCTAGGGCAATG 57.904 43.478 0.00 0.00 0.00 2.82
239 243 0.965363 GGGCAATGGGTCAACACGAT 60.965 55.000 0.00 0.00 0.00 3.73
356 360 2.036089 CAGCTAGGGTTTAGGATCGACC 59.964 54.545 0.00 0.00 39.35 4.79
403 408 8.940397 AAGGAGAAAGAGATTTGGTGAAATAA 57.060 30.769 0.00 0.00 31.58 1.40
422 427 8.511321 TGAAATAATTCGTTGTATTGCTTGAGT 58.489 29.630 0.00 0.00 38.46 3.41
450 455 8.442374 TCGTGGGCATATATATAGGAGTACATA 58.558 37.037 8.56 0.00 0.00 2.29
528 535 7.604549 TCCTATACAATCACGTTACTCAACAA 58.395 34.615 0.00 0.00 34.05 2.83
531 538 9.901724 CTATACAATCACGTTACTCAACAATTC 57.098 33.333 0.00 0.00 34.05 2.17
532 539 6.612247 ACAATCACGTTACTCAACAATTCA 57.388 33.333 0.00 0.00 34.05 2.57
533 540 6.427150 ACAATCACGTTACTCAACAATTCAC 58.573 36.000 0.00 0.00 34.05 3.18
534 541 6.260050 ACAATCACGTTACTCAACAATTCACT 59.740 34.615 0.00 0.00 34.05 3.41
535 542 6.861065 ATCACGTTACTCAACAATTCACTT 57.139 33.333 0.00 0.00 34.05 3.16
536 543 6.281848 TCACGTTACTCAACAATTCACTTC 57.718 37.500 0.00 0.00 34.05 3.01
537 544 5.813157 TCACGTTACTCAACAATTCACTTCA 59.187 36.000 0.00 0.00 34.05 3.02
538 545 6.481976 TCACGTTACTCAACAATTCACTTCAT 59.518 34.615 0.00 0.00 34.05 2.57
539 546 7.654116 TCACGTTACTCAACAATTCACTTCATA 59.346 33.333 0.00 0.00 34.05 2.15
540 547 7.952101 CACGTTACTCAACAATTCACTTCATAG 59.048 37.037 0.00 0.00 34.05 2.23
541 548 7.117812 ACGTTACTCAACAATTCACTTCATAGG 59.882 37.037 0.00 0.00 34.05 2.57
542 549 7.330946 CGTTACTCAACAATTCACTTCATAGGA 59.669 37.037 0.00 0.00 34.05 2.94
543 550 8.999431 GTTACTCAACAATTCACTTCATAGGAA 58.001 33.333 0.00 0.00 34.60 3.36
544 551 9.739276 TTACTCAACAATTCACTTCATAGGAAT 57.261 29.630 0.00 0.00 32.90 3.01
545 552 8.641498 ACTCAACAATTCACTTCATAGGAATT 57.359 30.769 0.00 0.00 40.76 2.17
546 553 9.082313 ACTCAACAATTCACTTCATAGGAATTT 57.918 29.630 0.00 0.00 38.74 1.82
547 554 9.918630 CTCAACAATTCACTTCATAGGAATTTT 57.081 29.630 0.00 0.00 38.74 1.82
602 609 7.408756 TTTCCTATGAAATGTGGAAGATTGG 57.591 36.000 0.00 0.00 39.90 3.16
603 610 6.325993 TCCTATGAAATGTGGAAGATTGGA 57.674 37.500 0.00 0.00 26.23 3.53
604 611 6.730447 TCCTATGAAATGTGGAAGATTGGAA 58.270 36.000 0.00 0.00 26.23 3.53
605 612 6.830324 TCCTATGAAATGTGGAAGATTGGAAG 59.170 38.462 0.00 0.00 26.23 3.46
606 613 6.830324 CCTATGAAATGTGGAAGATTGGAAGA 59.170 38.462 0.00 0.00 26.23 2.87
607 614 7.340232 CCTATGAAATGTGGAAGATTGGAAGAA 59.660 37.037 0.00 0.00 26.23 2.52
608 615 7.729124 ATGAAATGTGGAAGATTGGAAGAAT 57.271 32.000 0.00 0.00 26.23 2.40
609 616 7.543359 TGAAATGTGGAAGATTGGAAGAATT 57.457 32.000 0.00 0.00 26.23 2.17
610 617 7.965718 TGAAATGTGGAAGATTGGAAGAATTT 58.034 30.769 0.00 0.00 26.23 1.82
611 618 8.090214 TGAAATGTGGAAGATTGGAAGAATTTC 58.910 33.333 0.00 0.00 33.19 2.17
612 619 7.787623 AATGTGGAAGATTGGAAGAATTTCT 57.212 32.000 0.00 0.00 33.68 2.52
613 620 7.787623 ATGTGGAAGATTGGAAGAATTTCTT 57.212 32.000 11.40 11.40 39.87 2.52
649 656 9.889128 ATGATTTTATTCATACAAACCAAAGGG 57.111 29.630 0.00 0.00 34.59 3.95
650 657 7.821846 TGATTTTATTCATACAAACCAAAGGGC 59.178 33.333 0.00 0.00 37.90 5.19
651 658 6.672266 TTTATTCATACAAACCAAAGGGCA 57.328 33.333 0.00 0.00 37.90 5.36
652 659 6.865834 TTATTCATACAAACCAAAGGGCAT 57.134 33.333 0.00 0.00 37.90 4.40
653 660 5.760484 ATTCATACAAACCAAAGGGCATT 57.240 34.783 0.00 0.00 37.90 3.56
654 661 6.865834 ATTCATACAAACCAAAGGGCATTA 57.134 33.333 0.00 0.00 37.90 1.90
655 662 6.672266 TTCATACAAACCAAAGGGCATTAA 57.328 33.333 0.00 0.00 37.90 1.40
656 663 6.672266 TCATACAAACCAAAGGGCATTAAA 57.328 33.333 0.00 0.00 37.90 1.52
657 664 6.696411 TCATACAAACCAAAGGGCATTAAAG 58.304 36.000 0.00 0.00 37.90 1.85
658 665 6.495181 TCATACAAACCAAAGGGCATTAAAGA 59.505 34.615 0.00 0.00 37.90 2.52
659 666 5.622346 ACAAACCAAAGGGCATTAAAGAA 57.378 34.783 0.00 0.00 37.90 2.52
660 667 5.995446 ACAAACCAAAGGGCATTAAAGAAA 58.005 33.333 0.00 0.00 37.90 2.52
661 668 6.600388 ACAAACCAAAGGGCATTAAAGAAAT 58.400 32.000 0.00 0.00 37.90 2.17
662 669 6.710295 ACAAACCAAAGGGCATTAAAGAAATC 59.290 34.615 0.00 0.00 37.90 2.17
663 670 6.686484 AACCAAAGGGCATTAAAGAAATCT 57.314 33.333 0.00 0.00 37.90 2.40
664 671 6.686484 ACCAAAGGGCATTAAAGAAATCTT 57.314 33.333 0.00 0.00 37.90 2.40
665 672 7.078249 ACCAAAGGGCATTAAAGAAATCTTT 57.922 32.000 12.61 12.61 42.66 2.52
666 673 7.517320 ACCAAAGGGCATTAAAGAAATCTTTT 58.483 30.769 13.18 0.00 41.32 2.27
667 674 7.998383 ACCAAAGGGCATTAAAGAAATCTTTTT 59.002 29.630 13.18 0.45 41.32 1.94
695 702 9.050154 ACAAAAATCCAATCCTATGAAATTCCT 57.950 29.630 0.00 0.00 0.00 3.36
696 703 9.321562 CAAAAATCCAATCCTATGAAATTCCTG 57.678 33.333 0.00 0.00 0.00 3.86
697 704 6.661304 AATCCAATCCTATGAAATTCCTGC 57.339 37.500 0.00 0.00 0.00 4.85
698 705 5.128033 TCCAATCCTATGAAATTCCTGCA 57.872 39.130 0.00 0.00 0.00 4.41
699 706 5.517924 TCCAATCCTATGAAATTCCTGCAA 58.482 37.500 0.00 0.00 0.00 4.08
700 707 5.957168 TCCAATCCTATGAAATTCCTGCAAA 59.043 36.000 0.00 0.00 0.00 3.68
701 708 6.440010 TCCAATCCTATGAAATTCCTGCAAAA 59.560 34.615 0.00 0.00 0.00 2.44
702 709 7.038445 TCCAATCCTATGAAATTCCTGCAAAAA 60.038 33.333 0.00 0.00 0.00 1.94
703 710 7.771826 CCAATCCTATGAAATTCCTGCAAAAAT 59.228 33.333 0.00 0.00 0.00 1.82
704 711 8.823818 CAATCCTATGAAATTCCTGCAAAAATC 58.176 33.333 0.00 0.00 0.00 2.17
705 712 6.877236 TCCTATGAAATTCCTGCAAAAATCC 58.123 36.000 0.00 0.00 0.00 3.01
706 713 6.669154 TCCTATGAAATTCCTGCAAAAATCCT 59.331 34.615 0.00 0.00 0.00 3.24
707 714 6.982724 CCTATGAAATTCCTGCAAAAATCCTC 59.017 38.462 0.00 0.00 0.00 3.71
708 715 4.808558 TGAAATTCCTGCAAAAATCCTCG 58.191 39.130 0.00 0.00 0.00 4.63
709 716 4.522405 TGAAATTCCTGCAAAAATCCTCGA 59.478 37.500 0.00 0.00 0.00 4.04
710 717 4.708726 AATTCCTGCAAAAATCCTCGAG 57.291 40.909 5.13 5.13 0.00 4.04
711 718 2.113860 TCCTGCAAAAATCCTCGAGG 57.886 50.000 26.32 26.32 0.00 4.63
712 719 0.453390 CCTGCAAAAATCCTCGAGGC 59.547 55.000 27.39 13.37 34.44 4.70
713 720 0.453390 CTGCAAAAATCCTCGAGGCC 59.547 55.000 27.39 0.00 34.44 5.19
714 721 0.038166 TGCAAAAATCCTCGAGGCCT 59.962 50.000 27.39 3.86 34.44 5.19
715 722 1.177401 GCAAAAATCCTCGAGGCCTT 58.823 50.000 27.39 18.66 34.44 4.35
716 723 2.290641 TGCAAAAATCCTCGAGGCCTTA 60.291 45.455 27.39 10.08 34.44 2.69
717 724 2.952310 GCAAAAATCCTCGAGGCCTTAT 59.048 45.455 27.39 12.18 34.44 1.73
718 725 4.134563 GCAAAAATCCTCGAGGCCTTATA 58.865 43.478 27.39 8.83 34.44 0.98
719 726 4.023963 GCAAAAATCCTCGAGGCCTTATAC 60.024 45.833 27.39 10.07 34.44 1.47
720 727 5.123227 CAAAAATCCTCGAGGCCTTATACA 58.877 41.667 27.39 7.18 34.44 2.29
721 728 4.608948 AAATCCTCGAGGCCTTATACAG 57.391 45.455 27.39 0.00 34.44 2.74
722 729 3.527507 ATCCTCGAGGCCTTATACAGA 57.472 47.619 27.39 5.55 34.44 3.41
723 730 3.308035 TCCTCGAGGCCTTATACAGAA 57.692 47.619 27.39 1.30 34.44 3.02
724 731 3.223435 TCCTCGAGGCCTTATACAGAAG 58.777 50.000 27.39 0.00 34.44 2.85
725 732 3.117625 TCCTCGAGGCCTTATACAGAAGA 60.118 47.826 27.39 0.58 34.44 2.87
726 733 3.254657 CCTCGAGGCCTTATACAGAAGAG 59.745 52.174 20.67 5.10 0.00 2.85
727 734 3.223435 TCGAGGCCTTATACAGAAGAGG 58.777 50.000 6.77 0.00 0.00 3.69
728 735 3.117625 TCGAGGCCTTATACAGAAGAGGA 60.118 47.826 6.77 0.00 0.00 3.71
729 736 3.637229 CGAGGCCTTATACAGAAGAGGAA 59.363 47.826 6.77 0.00 0.00 3.36
730 737 4.261825 CGAGGCCTTATACAGAAGAGGAAG 60.262 50.000 6.77 0.00 0.00 3.46
731 738 3.970640 AGGCCTTATACAGAAGAGGAAGG 59.029 47.826 0.00 0.00 37.17 3.46
732 739 3.967987 GGCCTTATACAGAAGAGGAAGGA 59.032 47.826 0.00 0.00 36.37 3.36
744 751 1.828595 GAGGAAGGAGAGGAACCACTC 59.171 57.143 9.25 9.25 37.77 3.51
754 761 0.534203 GGAACCACTCGAAACCAGCA 60.534 55.000 0.00 0.00 0.00 4.41
784 792 1.349688 TGTCAGTGTACCATTGGACCC 59.650 52.381 10.37 0.00 0.00 4.46
789 797 2.106857 AGTGTACCATTGGACCCGAAAA 59.893 45.455 10.37 0.00 0.00 2.29
790 798 3.086282 GTGTACCATTGGACCCGAAAAT 58.914 45.455 10.37 0.00 0.00 1.82
791 799 3.508402 GTGTACCATTGGACCCGAAAATT 59.492 43.478 10.37 0.00 0.00 1.82
792 800 3.759618 TGTACCATTGGACCCGAAAATTC 59.240 43.478 10.37 0.00 0.00 2.17
794 802 3.235200 ACCATTGGACCCGAAAATTCAA 58.765 40.909 10.37 0.00 0.00 2.69
796 804 3.584834 CATTGGACCCGAAAATTCAACC 58.415 45.455 0.00 0.00 0.00 3.77
797 805 1.240256 TGGACCCGAAAATTCAACCG 58.760 50.000 0.00 0.00 0.00 4.44
887 898 2.034878 TGTCTGTGAGTCTGAAGCACT 58.965 47.619 11.03 0.00 33.83 4.40
888 899 2.035193 TGTCTGTGAGTCTGAAGCACTC 59.965 50.000 11.03 0.00 40.75 3.51
889 900 2.295909 GTCTGTGAGTCTGAAGCACTCT 59.704 50.000 11.03 0.00 40.93 3.24
890 901 2.295629 TCTGTGAGTCTGAAGCACTCTG 59.704 50.000 11.03 0.00 40.93 3.35
891 902 1.342496 TGTGAGTCTGAAGCACTCTGG 59.658 52.381 11.03 0.00 40.93 3.86
892 903 1.615883 GTGAGTCTGAAGCACTCTGGA 59.384 52.381 3.17 0.00 40.93 3.86
893 904 2.036475 GTGAGTCTGAAGCACTCTGGAA 59.964 50.000 3.17 0.00 40.93 3.53
894 905 2.298446 TGAGTCTGAAGCACTCTGGAAG 59.702 50.000 3.17 0.00 40.93 3.46
958 969 1.068753 CAAGATCGCCGGCTCATCT 59.931 57.895 26.68 25.63 0.00 2.90
989 1003 1.073177 ATACGTACACGCCACAAAGC 58.927 50.000 0.00 0.00 44.43 3.51
1005 1019 0.107945 AAGCGAGAGGAAGCATGGAC 60.108 55.000 0.00 0.00 35.48 4.02
1068 1082 2.893398 GAGTTCACCGAGGCCGAT 59.107 61.111 0.00 0.00 38.22 4.18
1185 1199 3.771160 GACCACGTCCTCCCGCAT 61.771 66.667 0.00 0.00 0.00 4.73
1236 1250 2.187946 GTGGTGGGCTCCATCTCG 59.812 66.667 6.12 0.00 39.81 4.04
1528 1554 0.109086 CATGTTCAGCCTCTCGTCGT 60.109 55.000 0.00 0.00 0.00 4.34
1597 1630 8.937634 AGAACCATTTGAATTGAATAATGAGC 57.062 30.769 1.72 0.00 31.29 4.26
1602 1635 8.415553 CCATTTGAATTGAATAATGAGCAGGTA 58.584 33.333 1.72 0.00 31.29 3.08
1606 1639 7.216494 TGAATTGAATAATGAGCAGGTATCGA 58.784 34.615 0.00 0.00 0.00 3.59
1608 1641 8.450578 AATTGAATAATGAGCAGGTATCGAAA 57.549 30.769 0.00 0.00 0.00 3.46
1610 1643 7.482654 TGAATAATGAGCAGGTATCGAAAAG 57.517 36.000 0.00 0.00 0.00 2.27
1611 1644 5.931441 ATAATGAGCAGGTATCGAAAAGC 57.069 39.130 0.00 0.00 0.00 3.51
1612 1645 2.760634 TGAGCAGGTATCGAAAAGCA 57.239 45.000 0.00 0.00 0.00 3.91
1613 1646 3.052455 TGAGCAGGTATCGAAAAGCAA 57.948 42.857 0.00 0.00 0.00 3.91
1614 1647 3.002791 TGAGCAGGTATCGAAAAGCAAG 58.997 45.455 0.00 0.00 0.00 4.01
1615 1648 3.262420 GAGCAGGTATCGAAAAGCAAGA 58.738 45.455 0.00 0.00 0.00 3.02
1616 1649 3.003480 AGCAGGTATCGAAAAGCAAGAC 58.997 45.455 0.00 0.00 0.00 3.01
1617 1650 2.222819 GCAGGTATCGAAAAGCAAGACG 60.223 50.000 0.00 0.00 0.00 4.18
1618 1651 3.250744 CAGGTATCGAAAAGCAAGACGA 58.749 45.455 0.00 0.00 39.01 4.20
1619 1652 3.865745 CAGGTATCGAAAAGCAAGACGAT 59.134 43.478 0.00 0.00 45.21 3.73
1620 1653 5.041287 CAGGTATCGAAAAGCAAGACGATA 58.959 41.667 0.00 0.00 43.47 2.92
1621 1654 5.518847 CAGGTATCGAAAAGCAAGACGATAA 59.481 40.000 14.10 1.94 44.91 1.75
1622 1655 6.035650 CAGGTATCGAAAAGCAAGACGATAAA 59.964 38.462 14.10 0.00 44.91 1.40
1623 1656 6.592607 AGGTATCGAAAAGCAAGACGATAAAA 59.407 34.615 14.10 0.00 44.91 1.52
1624 1657 6.681599 GGTATCGAAAAGCAAGACGATAAAAC 59.318 38.462 14.10 7.81 44.91 2.43
1625 1658 4.694177 TCGAAAAGCAAGACGATAAAACG 58.306 39.130 0.00 0.00 39.31 3.60
1627 1660 4.901881 CGAAAAGCAAGACGATAAAACGTT 59.098 37.500 0.00 0.00 46.52 3.99
1628 1661 5.164415 CGAAAAGCAAGACGATAAAACGTTG 60.164 40.000 0.00 0.00 46.52 4.10
1631 1680 4.769215 AGCAAGACGATAAAACGTTGAAC 58.231 39.130 0.00 0.00 46.52 3.18
1644 1693 1.798223 CGTTGAACTCTCAATCGCCAA 59.202 47.619 0.00 0.00 43.39 4.52
1645 1694 2.223144 CGTTGAACTCTCAATCGCCAAA 59.777 45.455 0.00 0.00 43.39 3.28
1646 1695 3.665323 CGTTGAACTCTCAATCGCCAAAG 60.665 47.826 0.00 0.00 43.39 2.77
1647 1696 3.401033 TGAACTCTCAATCGCCAAAGA 57.599 42.857 0.00 0.00 0.00 2.52
1648 1697 3.067106 TGAACTCTCAATCGCCAAAGAC 58.933 45.455 0.00 0.00 0.00 3.01
1649 1698 3.244215 TGAACTCTCAATCGCCAAAGACT 60.244 43.478 0.00 0.00 0.00 3.24
1650 1699 4.021456 TGAACTCTCAATCGCCAAAGACTA 60.021 41.667 0.00 0.00 0.00 2.59
1651 1700 3.851098 ACTCTCAATCGCCAAAGACTAC 58.149 45.455 0.00 0.00 0.00 2.73
1652 1701 3.258372 ACTCTCAATCGCCAAAGACTACA 59.742 43.478 0.00 0.00 0.00 2.74
1653 1702 4.245660 CTCTCAATCGCCAAAGACTACAA 58.754 43.478 0.00 0.00 0.00 2.41
1654 1703 4.832248 TCTCAATCGCCAAAGACTACAAT 58.168 39.130 0.00 0.00 0.00 2.71
1655 1704 4.870426 TCTCAATCGCCAAAGACTACAATC 59.130 41.667 0.00 0.00 0.00 2.67
2074 2143 2.756840 AACTCCGTTAGCTGGTAACC 57.243 50.000 20.41 6.64 38.27 2.85
2076 2145 0.179119 CTCCGTTAGCTGGTAACCCG 60.179 60.000 20.41 11.93 38.27 5.28
2335 2422 1.429463 CGGTGTACAGCTTCTTGTCC 58.571 55.000 21.80 3.56 32.56 4.02
2429 2519 7.891498 AACCTCCACTGTTAATAACAAGTTT 57.109 32.000 7.30 0.00 41.61 2.66
2464 2554 4.753610 CCTGATGATTGCCAGTATGTAGTG 59.246 45.833 0.00 0.00 0.00 2.74
2466 2556 5.744171 TGATGATTGCCAGTATGTAGTGTT 58.256 37.500 0.00 0.00 0.00 3.32
2467 2557 6.179756 TGATGATTGCCAGTATGTAGTGTTT 58.820 36.000 0.00 0.00 0.00 2.83
2468 2558 5.878332 TGATTGCCAGTATGTAGTGTTTG 57.122 39.130 0.00 0.00 0.00 2.93
2470 2560 3.417069 TGCCAGTATGTAGTGTTTGCT 57.583 42.857 0.00 0.00 0.00 3.91
2471 2561 3.073678 TGCCAGTATGTAGTGTTTGCTG 58.926 45.455 0.00 0.00 0.00 4.41
2472 2562 3.244387 TGCCAGTATGTAGTGTTTGCTGA 60.244 43.478 0.00 0.00 0.00 4.26
2496 2591 3.276857 GAATTCCATCAGCAGCAGAGAA 58.723 45.455 0.00 0.00 0.00 2.87
2497 2592 2.398252 TTCCATCAGCAGCAGAGAAG 57.602 50.000 0.00 0.00 0.00 2.85
2498 2593 1.565067 TCCATCAGCAGCAGAGAAGA 58.435 50.000 0.00 0.00 0.00 2.87
2499 2594 2.117051 TCCATCAGCAGCAGAGAAGAT 58.883 47.619 0.00 0.00 0.00 2.40
2508 2612 3.752222 GCAGCAGAGAAGATATTCCCATG 59.248 47.826 0.00 0.00 0.00 3.66
2510 2614 3.080319 GCAGAGAAGATATTCCCATGGC 58.920 50.000 6.09 0.00 0.00 4.40
2536 2640 7.624360 TTGCTTCAGTCTTCAACTTTAGAAA 57.376 32.000 0.00 0.00 35.45 2.52
2537 2641 7.807977 TGCTTCAGTCTTCAACTTTAGAAAT 57.192 32.000 0.00 0.00 35.45 2.17
2538 2642 7.865707 TGCTTCAGTCTTCAACTTTAGAAATC 58.134 34.615 0.00 0.00 35.45 2.17
2539 2643 7.498900 TGCTTCAGTCTTCAACTTTAGAAATCA 59.501 33.333 0.00 0.00 35.45 2.57
2540 2644 8.510505 GCTTCAGTCTTCAACTTTAGAAATCAT 58.489 33.333 0.00 0.00 35.45 2.45
2543 2647 9.559732 TCAGTCTTCAACTTTAGAAATCATTCA 57.440 29.630 0.00 0.00 35.39 2.57
2549 2653 9.745018 TTCAACTTTAGAAATCATTCATCTCCT 57.255 29.630 0.00 0.00 38.06 3.69
2550 2654 9.170734 TCAACTTTAGAAATCATTCATCTCCTG 57.829 33.333 0.00 0.00 38.06 3.86
2551 2655 8.954350 CAACTTTAGAAATCATTCATCTCCTGT 58.046 33.333 0.00 0.00 38.06 4.00
2556 2660 9.914131 TTAGAAATCATTCATCTCCTGTATACG 57.086 33.333 0.00 0.00 38.06 3.06
2557 2661 8.183104 AGAAATCATTCATCTCCTGTATACGA 57.817 34.615 0.00 0.00 38.06 3.43
2558 2662 8.811017 AGAAATCATTCATCTCCTGTATACGAT 58.189 33.333 0.00 0.00 38.06 3.73
2559 2663 8.768957 AAATCATTCATCTCCTGTATACGATG 57.231 34.615 10.55 10.55 35.70 3.84
2560 2664 6.901081 TCATTCATCTCCTGTATACGATGT 57.099 37.500 14.37 0.00 35.82 3.06
2561 2665 7.996098 TCATTCATCTCCTGTATACGATGTA 57.004 36.000 14.37 8.46 35.82 2.29
2562 2666 8.581253 TCATTCATCTCCTGTATACGATGTAT 57.419 34.615 14.37 9.88 35.82 2.29
2563 2667 9.681062 TCATTCATCTCCTGTATACGATGTATA 57.319 33.333 14.37 0.00 35.82 1.47
2564 2668 9.943163 CATTCATCTCCTGTATACGATGTATAG 57.057 37.037 14.37 0.00 35.82 1.31
2565 2669 9.688091 ATTCATCTCCTGTATACGATGTATAGT 57.312 33.333 14.37 0.00 35.82 2.12
2566 2670 8.494016 TCATCTCCTGTATACGATGTATAGTG 57.506 38.462 14.37 1.12 35.82 2.74
2567 2671 8.319146 TCATCTCCTGTATACGATGTATAGTGA 58.681 37.037 14.37 2.95 35.82 3.41
2568 2672 8.608317 CATCTCCTGTATACGATGTATAGTGAG 58.392 40.741 9.21 4.69 0.00 3.51
2569 2673 6.594547 TCTCCTGTATACGATGTATAGTGAGC 59.405 42.308 0.00 0.00 0.00 4.26
2570 2674 6.473758 TCCTGTATACGATGTATAGTGAGCT 58.526 40.000 0.00 0.00 0.00 4.09
2571 2675 6.371825 TCCTGTATACGATGTATAGTGAGCTG 59.628 42.308 0.00 0.00 0.00 4.24
2572 2676 6.403746 CCTGTATACGATGTATAGTGAGCTGG 60.404 46.154 0.00 0.00 0.00 4.85
2573 2677 5.414765 TGTATACGATGTATAGTGAGCTGGG 59.585 44.000 0.00 0.00 0.00 4.45
2574 2678 1.341531 ACGATGTATAGTGAGCTGGGC 59.658 52.381 0.00 0.00 0.00 5.36
2575 2679 1.337260 CGATGTATAGTGAGCTGGGCC 60.337 57.143 0.00 0.00 0.00 5.80
2576 2680 0.681733 ATGTATAGTGAGCTGGGCCG 59.318 55.000 0.00 0.00 0.00 6.13
2577 2681 1.367840 GTATAGTGAGCTGGGCCGG 59.632 63.158 8.39 8.39 0.00 6.13
2578 2682 2.507854 TATAGTGAGCTGGGCCGGC 61.508 63.158 30.23 30.23 35.73 6.13
2590 2694 4.129148 GCCGGCCCATCTTTCCCT 62.129 66.667 18.11 0.00 0.00 4.20
2591 2695 2.683475 CCGGCCCATCTTTCCCTT 59.317 61.111 0.00 0.00 0.00 3.95
2592 2696 1.754234 CCGGCCCATCTTTCCCTTG 60.754 63.158 0.00 0.00 0.00 3.61
2593 2697 1.000896 CGGCCCATCTTTCCCTTGT 60.001 57.895 0.00 0.00 0.00 3.16
2594 2698 0.254747 CGGCCCATCTTTCCCTTGTA 59.745 55.000 0.00 0.00 0.00 2.41
2595 2699 1.763968 GGCCCATCTTTCCCTTGTAC 58.236 55.000 0.00 0.00 0.00 2.90
2596 2700 1.005450 GGCCCATCTTTCCCTTGTACA 59.995 52.381 0.00 0.00 0.00 2.90
2597 2701 2.556559 GGCCCATCTTTCCCTTGTACAA 60.557 50.000 8.28 8.28 0.00 2.41
2598 2702 3.161866 GCCCATCTTTCCCTTGTACAAA 58.838 45.455 10.03 0.00 0.00 2.83
2599 2703 3.576550 GCCCATCTTTCCCTTGTACAAAA 59.423 43.478 10.03 0.00 0.00 2.44
2600 2704 4.222810 GCCCATCTTTCCCTTGTACAAAAT 59.777 41.667 10.03 0.00 0.00 1.82
2601 2705 5.279960 GCCCATCTTTCCCTTGTACAAAATT 60.280 40.000 10.03 0.00 0.00 1.82
2602 2706 6.398095 CCCATCTTTCCCTTGTACAAAATTC 58.602 40.000 10.03 0.00 0.00 2.17
2603 2707 6.092748 CCATCTTTCCCTTGTACAAAATTCG 58.907 40.000 10.03 0.00 0.00 3.34
2604 2708 6.072175 CCATCTTTCCCTTGTACAAAATTCGA 60.072 38.462 10.03 3.12 0.00 3.71
2605 2709 6.308371 TCTTTCCCTTGTACAAAATTCGAC 57.692 37.500 10.03 0.00 0.00 4.20
2606 2710 4.735662 TTCCCTTGTACAAAATTCGACG 57.264 40.909 10.03 0.00 0.00 5.12
2607 2711 3.731089 TCCCTTGTACAAAATTCGACGT 58.269 40.909 10.03 0.00 0.00 4.34
2608 2712 3.495377 TCCCTTGTACAAAATTCGACGTG 59.505 43.478 10.03 0.00 0.00 4.49
2609 2713 3.495377 CCCTTGTACAAAATTCGACGTGA 59.505 43.478 10.03 0.00 0.00 4.35
2610 2714 4.153475 CCCTTGTACAAAATTCGACGTGAT 59.847 41.667 10.03 0.00 0.00 3.06
2611 2715 5.349270 CCCTTGTACAAAATTCGACGTGATA 59.651 40.000 10.03 0.00 0.00 2.15
2612 2716 6.128499 CCCTTGTACAAAATTCGACGTGATAA 60.128 38.462 10.03 0.00 0.00 1.75
2613 2717 6.735063 CCTTGTACAAAATTCGACGTGATAAC 59.265 38.462 10.03 0.00 0.00 1.89
2614 2718 6.155691 TGTACAAAATTCGACGTGATAACC 57.844 37.500 0.00 0.00 0.00 2.85
2615 2719 5.695363 TGTACAAAATTCGACGTGATAACCA 59.305 36.000 0.00 0.00 0.00 3.67
2616 2720 5.676532 ACAAAATTCGACGTGATAACCAA 57.323 34.783 0.00 0.00 0.00 3.67
2617 2721 5.445845 ACAAAATTCGACGTGATAACCAAC 58.554 37.500 0.00 0.00 0.00 3.77
2618 2722 4.673534 AAATTCGACGTGATAACCAACC 57.326 40.909 0.00 0.00 0.00 3.77
2619 2723 1.700523 TTCGACGTGATAACCAACCG 58.299 50.000 0.00 0.00 0.00 4.44
2620 2724 0.109179 TCGACGTGATAACCAACCGG 60.109 55.000 0.00 0.00 38.77 5.28
2621 2725 1.689352 CGACGTGATAACCAACCGGC 61.689 60.000 0.00 0.00 34.57 6.13
2622 2726 1.689352 GACGTGATAACCAACCGGCG 61.689 60.000 0.00 0.00 34.57 6.46
2623 2727 1.446445 CGTGATAACCAACCGGCGA 60.446 57.895 9.30 0.00 34.57 5.54
2624 2728 1.689352 CGTGATAACCAACCGGCGAC 61.689 60.000 9.30 0.00 34.57 5.19
2625 2729 0.390735 GTGATAACCAACCGGCGACT 60.391 55.000 9.30 0.00 34.57 4.18
2626 2730 0.322322 TGATAACCAACCGGCGACTT 59.678 50.000 9.30 0.00 34.57 3.01
2627 2731 0.725117 GATAACCAACCGGCGACTTG 59.275 55.000 9.30 9.44 34.57 3.16
2628 2732 0.322322 ATAACCAACCGGCGACTTGA 59.678 50.000 9.30 0.00 34.57 3.02
2629 2733 0.320073 TAACCAACCGGCGACTTGAG 60.320 55.000 9.30 6.37 34.57 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 145 2.768698 TGATCGCGTGGTTCCTTTTTA 58.231 42.857 5.77 0.00 0.00 1.52
149 152 2.505866 GTCATTTTGATCGCGTGGTTC 58.494 47.619 5.77 0.00 0.00 3.62
164 167 0.320374 TCTGTCTTTCGCCGGTCATT 59.680 50.000 1.90 0.00 0.00 2.57
175 178 5.659440 TTGCTTTGGAGTTTTCTGTCTTT 57.341 34.783 0.00 0.00 0.00 2.52
176 179 5.654497 CTTTGCTTTGGAGTTTTCTGTCTT 58.346 37.500 0.00 0.00 0.00 3.01
180 183 4.047142 GAGCTTTGCTTTGGAGTTTTCTG 58.953 43.478 0.00 0.00 39.88 3.02
191 195 4.886489 AGTCTTTTCTCTGAGCTTTGCTTT 59.114 37.500 0.00 0.00 39.88 3.51
205 209 4.080638 CCATTGCCCTAGAGAGTCTTTTCT 60.081 45.833 0.00 0.00 0.00 2.52
225 229 1.449601 GCCGATCGTGTTGACCCAT 60.450 57.895 15.09 0.00 0.00 4.00
227 231 3.186047 CGCCGATCGTGTTGACCC 61.186 66.667 15.09 0.00 0.00 4.46
239 243 0.957395 ACCTAGAGTTCGTTCGCCGA 60.957 55.000 0.00 0.00 45.66 5.54
336 340 2.091222 AGGTCGATCCTAAACCCTAGCT 60.091 50.000 4.93 0.00 46.10 3.32
358 362 9.521841 TCTCCTTTCTAACATGATATCTATCGT 57.478 33.333 0.00 0.00 35.48 3.73
379 383 9.539194 AATTATTTCACCAAATCTCTTTCTCCT 57.461 29.630 0.00 0.00 33.95 3.69
385 389 8.576442 ACAACGAATTATTTCACCAAATCTCTT 58.424 29.630 0.00 0.00 33.95 2.85
403 408 4.327357 CGAGACTCAAGCAATACAACGAAT 59.673 41.667 2.82 0.00 0.00 3.34
422 427 6.014771 ACTCCTATATATATGCCCACGAGA 57.985 41.667 5.44 0.00 0.00 4.04
576 583 8.480501 CCAATCTTCCACATTTCATAGGAAAAT 58.519 33.333 6.65 0.00 45.52 1.82
577 584 7.673504 TCCAATCTTCCACATTTCATAGGAAAA 59.326 33.333 6.65 0.00 45.52 2.29
578 585 7.181361 TCCAATCTTCCACATTTCATAGGAAA 58.819 34.615 4.85 4.85 46.36 3.13
579 586 6.730447 TCCAATCTTCCACATTTCATAGGAA 58.270 36.000 0.00 0.00 37.79 3.36
580 587 6.325993 TCCAATCTTCCACATTTCATAGGA 57.674 37.500 0.00 0.00 0.00 2.94
581 588 6.830324 TCTTCCAATCTTCCACATTTCATAGG 59.170 38.462 0.00 0.00 0.00 2.57
582 589 7.870509 TCTTCCAATCTTCCACATTTCATAG 57.129 36.000 0.00 0.00 0.00 2.23
583 590 8.827832 ATTCTTCCAATCTTCCACATTTCATA 57.172 30.769 0.00 0.00 0.00 2.15
584 591 7.729124 ATTCTTCCAATCTTCCACATTTCAT 57.271 32.000 0.00 0.00 0.00 2.57
585 592 7.543359 AATTCTTCCAATCTTCCACATTTCA 57.457 32.000 0.00 0.00 0.00 2.69
586 593 8.309656 AGAAATTCTTCCAATCTTCCACATTTC 58.690 33.333 0.00 0.00 31.28 2.17
587 594 8.198807 AGAAATTCTTCCAATCTTCCACATTT 57.801 30.769 0.00 0.00 31.28 2.32
588 595 7.787623 AGAAATTCTTCCAATCTTCCACATT 57.212 32.000 0.00 0.00 31.28 2.71
589 596 7.787623 AAGAAATTCTTCCAATCTTCCACAT 57.212 32.000 1.80 0.00 28.99 3.21
590 597 7.219484 GAAGAAATTCTTCCAATCTTCCACA 57.781 36.000 21.66 0.00 45.34 4.17
623 630 9.889128 CCCTTTGGTTTGTATGAATAAAATCAT 57.111 29.630 0.00 0.00 42.52 2.45
624 631 7.821846 GCCCTTTGGTTTGTATGAATAAAATCA 59.178 33.333 0.00 0.00 0.00 2.57
625 632 7.821846 TGCCCTTTGGTTTGTATGAATAAAATC 59.178 33.333 0.00 0.00 0.00 2.17
626 633 7.684529 TGCCCTTTGGTTTGTATGAATAAAAT 58.315 30.769 0.00 0.00 0.00 1.82
627 634 7.067496 TGCCCTTTGGTTTGTATGAATAAAA 57.933 32.000 0.00 0.00 0.00 1.52
628 635 6.672266 TGCCCTTTGGTTTGTATGAATAAA 57.328 33.333 0.00 0.00 0.00 1.40
629 636 6.865834 ATGCCCTTTGGTTTGTATGAATAA 57.134 33.333 0.00 0.00 0.00 1.40
630 637 6.865834 AATGCCCTTTGGTTTGTATGAATA 57.134 33.333 0.00 0.00 0.00 1.75
631 638 5.760484 AATGCCCTTTGGTTTGTATGAAT 57.240 34.783 0.00 0.00 0.00 2.57
632 639 6.672266 TTAATGCCCTTTGGTTTGTATGAA 57.328 33.333 0.00 0.00 0.00 2.57
633 640 6.495181 TCTTTAATGCCCTTTGGTTTGTATGA 59.505 34.615 0.00 0.00 0.00 2.15
634 641 6.696411 TCTTTAATGCCCTTTGGTTTGTATG 58.304 36.000 0.00 0.00 0.00 2.39
635 642 6.926630 TCTTTAATGCCCTTTGGTTTGTAT 57.073 33.333 0.00 0.00 0.00 2.29
636 643 6.732896 TTCTTTAATGCCCTTTGGTTTGTA 57.267 33.333 0.00 0.00 0.00 2.41
637 644 5.622346 TTCTTTAATGCCCTTTGGTTTGT 57.378 34.783 0.00 0.00 0.00 2.83
638 645 6.936335 AGATTTCTTTAATGCCCTTTGGTTTG 59.064 34.615 0.00 0.00 0.00 2.93
639 646 7.078249 AGATTTCTTTAATGCCCTTTGGTTT 57.922 32.000 0.00 0.00 0.00 3.27
640 647 6.686484 AGATTTCTTTAATGCCCTTTGGTT 57.314 33.333 0.00 0.00 0.00 3.67
641 648 6.686484 AAGATTTCTTTAATGCCCTTTGGT 57.314 33.333 0.00 0.00 30.82 3.67
642 649 7.984422 AAAAGATTTCTTTAATGCCCTTTGG 57.016 32.000 6.01 0.00 44.69 3.28
669 676 9.050154 AGGAATTTCATAGGATTGGATTTTTGT 57.950 29.630 0.00 0.00 0.00 2.83
670 677 9.321562 CAGGAATTTCATAGGATTGGATTTTTG 57.678 33.333 0.00 0.00 0.00 2.44
671 678 7.989170 GCAGGAATTTCATAGGATTGGATTTTT 59.011 33.333 0.00 0.00 0.00 1.94
672 679 7.126115 TGCAGGAATTTCATAGGATTGGATTTT 59.874 33.333 0.00 0.00 0.00 1.82
673 680 6.612456 TGCAGGAATTTCATAGGATTGGATTT 59.388 34.615 0.00 0.00 0.00 2.17
674 681 6.138263 TGCAGGAATTTCATAGGATTGGATT 58.862 36.000 0.00 0.00 0.00 3.01
675 682 5.708544 TGCAGGAATTTCATAGGATTGGAT 58.291 37.500 0.00 0.00 0.00 3.41
676 683 5.128033 TGCAGGAATTTCATAGGATTGGA 57.872 39.130 0.00 0.00 0.00 3.53
677 684 5.857471 TTGCAGGAATTTCATAGGATTGG 57.143 39.130 0.00 0.00 0.00 3.16
678 685 8.726870 ATTTTTGCAGGAATTTCATAGGATTG 57.273 30.769 0.00 0.00 0.00 2.67
679 686 7.989170 GGATTTTTGCAGGAATTTCATAGGATT 59.011 33.333 0.00 0.00 0.00 3.01
680 687 7.346436 AGGATTTTTGCAGGAATTTCATAGGAT 59.654 33.333 0.00 0.00 0.00 3.24
681 688 6.669154 AGGATTTTTGCAGGAATTTCATAGGA 59.331 34.615 0.00 0.00 0.00 2.94
682 689 6.881570 AGGATTTTTGCAGGAATTTCATAGG 58.118 36.000 0.00 0.00 0.00 2.57
683 690 6.694411 CGAGGATTTTTGCAGGAATTTCATAG 59.306 38.462 0.00 0.00 0.00 2.23
684 691 6.376864 TCGAGGATTTTTGCAGGAATTTCATA 59.623 34.615 0.00 0.00 0.00 2.15
685 692 5.185635 TCGAGGATTTTTGCAGGAATTTCAT 59.814 36.000 0.00 0.00 0.00 2.57
686 693 4.522405 TCGAGGATTTTTGCAGGAATTTCA 59.478 37.500 0.00 0.00 0.00 2.69
687 694 5.059404 TCGAGGATTTTTGCAGGAATTTC 57.941 39.130 0.00 0.00 0.00 2.17
688 695 4.082026 CCTCGAGGATTTTTGCAGGAATTT 60.082 41.667 28.21 0.00 37.39 1.82
689 696 3.445096 CCTCGAGGATTTTTGCAGGAATT 59.555 43.478 28.21 0.00 37.39 2.17
690 697 3.019564 CCTCGAGGATTTTTGCAGGAAT 58.980 45.455 28.21 0.00 37.39 3.01
691 698 2.436417 CCTCGAGGATTTTTGCAGGAA 58.564 47.619 28.21 0.00 37.39 3.36
692 699 1.950484 GCCTCGAGGATTTTTGCAGGA 60.950 52.381 35.69 0.00 37.39 3.86
693 700 0.453390 GCCTCGAGGATTTTTGCAGG 59.547 55.000 35.69 4.98 37.39 4.85
694 701 0.453390 GGCCTCGAGGATTTTTGCAG 59.547 55.000 35.69 4.55 37.39 4.41
695 702 0.038166 AGGCCTCGAGGATTTTTGCA 59.962 50.000 35.69 0.00 37.39 4.08
696 703 1.177401 AAGGCCTCGAGGATTTTTGC 58.823 50.000 35.69 16.91 37.39 3.68
697 704 5.123227 TGTATAAGGCCTCGAGGATTTTTG 58.877 41.667 35.69 6.96 37.39 2.44
698 705 5.130477 TCTGTATAAGGCCTCGAGGATTTTT 59.870 40.000 35.69 22.01 37.39 1.94
699 706 4.654262 TCTGTATAAGGCCTCGAGGATTTT 59.346 41.667 35.69 24.31 37.39 1.82
700 707 4.223953 TCTGTATAAGGCCTCGAGGATTT 58.776 43.478 35.69 26.65 37.39 2.17
701 708 3.845860 TCTGTATAAGGCCTCGAGGATT 58.154 45.455 35.69 27.49 37.39 3.01
702 709 3.527507 TCTGTATAAGGCCTCGAGGAT 57.472 47.619 35.69 20.92 37.39 3.24
703 710 3.117625 TCTTCTGTATAAGGCCTCGAGGA 60.118 47.826 35.69 14.81 37.39 3.71
704 711 3.223435 TCTTCTGTATAAGGCCTCGAGG 58.777 50.000 27.83 27.83 38.53 4.63
705 712 3.254657 CCTCTTCTGTATAAGGCCTCGAG 59.745 52.174 5.23 5.13 0.00 4.04
706 713 3.117625 TCCTCTTCTGTATAAGGCCTCGA 60.118 47.826 5.23 0.00 0.00 4.04
707 714 3.223435 TCCTCTTCTGTATAAGGCCTCG 58.777 50.000 5.23 0.00 0.00 4.63
708 715 4.039852 CCTTCCTCTTCTGTATAAGGCCTC 59.960 50.000 5.23 0.00 0.00 4.70
709 716 3.970640 CCTTCCTCTTCTGTATAAGGCCT 59.029 47.826 0.00 0.00 0.00 5.19
710 717 3.967987 TCCTTCCTCTTCTGTATAAGGCC 59.032 47.826 0.00 0.00 34.72 5.19
711 718 4.896482 TCTCCTTCCTCTTCTGTATAAGGC 59.104 45.833 0.00 0.00 34.72 4.35
712 719 5.538433 CCTCTCCTTCCTCTTCTGTATAAGG 59.462 48.000 0.00 0.00 35.80 2.69
713 720 6.369629 TCCTCTCCTTCCTCTTCTGTATAAG 58.630 44.000 0.00 0.00 0.00 1.73
714 721 6.342819 TCCTCTCCTTCCTCTTCTGTATAA 57.657 41.667 0.00 0.00 0.00 0.98
715 722 5.996271 TCCTCTCCTTCCTCTTCTGTATA 57.004 43.478 0.00 0.00 0.00 1.47
716 723 4.890499 TCCTCTCCTTCCTCTTCTGTAT 57.110 45.455 0.00 0.00 0.00 2.29
717 724 4.345854 GTTCCTCTCCTTCCTCTTCTGTA 58.654 47.826 0.00 0.00 0.00 2.74
718 725 3.169908 GTTCCTCTCCTTCCTCTTCTGT 58.830 50.000 0.00 0.00 0.00 3.41
719 726 2.499693 GGTTCCTCTCCTTCCTCTTCTG 59.500 54.545 0.00 0.00 0.00 3.02
720 727 2.112691 TGGTTCCTCTCCTTCCTCTTCT 59.887 50.000 0.00 0.00 0.00 2.85
721 728 2.235155 GTGGTTCCTCTCCTTCCTCTTC 59.765 54.545 0.00 0.00 0.00 2.87
722 729 2.158081 AGTGGTTCCTCTCCTTCCTCTT 60.158 50.000 0.00 0.00 0.00 2.85
723 730 1.435168 AGTGGTTCCTCTCCTTCCTCT 59.565 52.381 0.00 0.00 0.00 3.69
724 731 1.828595 GAGTGGTTCCTCTCCTTCCTC 59.171 57.143 9.08 0.00 0.00 3.71
725 732 1.893210 CGAGTGGTTCCTCTCCTTCCT 60.893 57.143 13.15 0.00 0.00 3.36
726 733 0.533032 CGAGTGGTTCCTCTCCTTCC 59.467 60.000 13.15 0.00 0.00 3.46
727 734 1.546961 TCGAGTGGTTCCTCTCCTTC 58.453 55.000 13.15 0.00 0.00 3.46
728 735 2.011122 TTCGAGTGGTTCCTCTCCTT 57.989 50.000 13.15 0.00 0.00 3.36
729 736 1.619332 GTTTCGAGTGGTTCCTCTCCT 59.381 52.381 13.15 0.00 0.00 3.69
730 737 1.337917 GGTTTCGAGTGGTTCCTCTCC 60.338 57.143 13.15 2.33 0.00 3.71
731 738 1.343465 TGGTTTCGAGTGGTTCCTCTC 59.657 52.381 9.94 9.94 0.00 3.20
732 739 1.344763 CTGGTTTCGAGTGGTTCCTCT 59.655 52.381 0.00 0.00 0.00 3.69
744 751 1.831389 CGTGTGAGGTGCTGGTTTCG 61.831 60.000 0.00 0.00 0.00 3.46
754 761 1.066605 GTACACTGACACGTGTGAGGT 59.933 52.381 33.36 28.12 46.77 3.85
784 792 3.889196 TTGGTCTCGGTTGAATTTTCG 57.111 42.857 0.00 0.00 0.00 3.46
789 797 5.782893 TTTTCATTTGGTCTCGGTTGAAT 57.217 34.783 0.00 0.00 0.00 2.57
790 798 5.584253 TTTTTCATTTGGTCTCGGTTGAA 57.416 34.783 0.00 0.00 0.00 2.69
791 799 5.300539 TGATTTTTCATTTGGTCTCGGTTGA 59.699 36.000 0.00 0.00 0.00 3.18
792 800 5.527951 TGATTTTTCATTTGGTCTCGGTTG 58.472 37.500 0.00 0.00 0.00 3.77
794 802 4.827284 ACTGATTTTTCATTTGGTCTCGGT 59.173 37.500 0.00 0.00 0.00 4.69
796 804 6.000891 TGACTGATTTTTCATTTGGTCTCG 57.999 37.500 0.00 0.00 0.00 4.04
797 805 7.040823 AGTCTGACTGATTTTTCATTTGGTCTC 60.041 37.037 10.00 0.00 0.00 3.36
835 843 1.394266 AATGCATGCCCCGGTGAATC 61.394 55.000 16.68 0.00 0.00 2.52
887 898 2.516227 ATCGACTCCAGACTTCCAGA 57.484 50.000 0.00 0.00 0.00 3.86
888 899 2.493675 TGAATCGACTCCAGACTTCCAG 59.506 50.000 0.00 0.00 0.00 3.86
889 900 2.525368 TGAATCGACTCCAGACTTCCA 58.475 47.619 0.00 0.00 0.00 3.53
890 901 3.594603 TTGAATCGACTCCAGACTTCC 57.405 47.619 0.00 0.00 0.00 3.46
891 902 4.152580 GGTTTTGAATCGACTCCAGACTTC 59.847 45.833 0.00 0.00 0.00 3.01
892 903 4.065789 GGTTTTGAATCGACTCCAGACTT 58.934 43.478 0.00 0.00 0.00 3.01
893 904 3.665190 GGTTTTGAATCGACTCCAGACT 58.335 45.455 0.00 0.00 0.00 3.24
894 905 2.412089 CGGTTTTGAATCGACTCCAGAC 59.588 50.000 0.00 0.00 0.00 3.51
958 969 7.167302 GTGGCGTGTACGTATTATTTATGTGTA 59.833 37.037 0.00 0.00 42.22 2.90
989 1003 0.250234 TTGGTCCATGCTTCCTCTCG 59.750 55.000 0.00 0.00 0.00 4.04
1220 1234 3.083349 CCGAGATGGAGCCCACCA 61.083 66.667 0.00 0.00 44.41 4.17
1519 1545 2.800581 CGGTCCGAGACGACGAGAG 61.801 68.421 4.91 0.00 33.30 3.20
1520 1546 2.812609 CGGTCCGAGACGACGAGA 60.813 66.667 4.91 0.00 33.30 4.04
1552 1578 6.536941 GGTTCTTTCACTTGTAAATTTTGGCA 59.463 34.615 0.00 0.00 0.00 4.92
1593 1626 2.760634 TGCTTTTCGATACCTGCTCA 57.239 45.000 0.00 0.00 0.00 4.26
1597 1630 3.250744 TCGTCTTGCTTTTCGATACCTG 58.749 45.455 0.00 0.00 0.00 4.00
1602 1635 5.107220 ACGTTTTATCGTCTTGCTTTTCGAT 60.107 36.000 10.75 10.75 43.66 3.59
1606 1639 5.812652 TCAACGTTTTATCGTCTTGCTTTT 58.187 33.333 0.00 0.00 43.38 2.27
1608 1641 5.007332 AGTTCAACGTTTTATCGTCTTGCTT 59.993 36.000 0.00 0.00 43.38 3.91
1610 1643 4.769215 AGTTCAACGTTTTATCGTCTTGC 58.231 39.130 0.00 0.00 43.38 4.01
1611 1644 6.074516 TGAGAGTTCAACGTTTTATCGTCTTG 60.075 38.462 0.00 0.00 43.38 3.02
1612 1645 5.981315 TGAGAGTTCAACGTTTTATCGTCTT 59.019 36.000 0.00 0.00 43.38 3.01
1613 1646 5.526115 TGAGAGTTCAACGTTTTATCGTCT 58.474 37.500 0.00 0.00 43.38 4.18
1614 1647 5.817616 TGAGAGTTCAACGTTTTATCGTC 57.182 39.130 0.00 0.00 43.38 4.20
1615 1648 6.399669 CGATTGAGAGTTCAACGTTTTATCGT 60.400 38.462 0.00 0.00 45.54 3.73
1616 1649 5.946389 CGATTGAGAGTTCAACGTTTTATCG 59.054 40.000 0.00 0.00 45.54 2.92
1617 1650 5.728507 GCGATTGAGAGTTCAACGTTTTATC 59.271 40.000 0.00 0.00 45.54 1.75
1618 1651 5.390567 GGCGATTGAGAGTTCAACGTTTTAT 60.391 40.000 0.00 0.00 45.54 1.40
1619 1652 4.084223 GGCGATTGAGAGTTCAACGTTTTA 60.084 41.667 0.00 0.00 45.54 1.52
1620 1653 3.303791 GGCGATTGAGAGTTCAACGTTTT 60.304 43.478 0.00 0.00 45.54 2.43
1621 1654 2.223377 GGCGATTGAGAGTTCAACGTTT 59.777 45.455 0.00 0.00 45.54 3.60
1622 1655 1.798813 GGCGATTGAGAGTTCAACGTT 59.201 47.619 0.00 0.00 45.54 3.99
1623 1656 1.270094 TGGCGATTGAGAGTTCAACGT 60.270 47.619 0.00 0.00 45.54 3.99
1624 1657 1.428448 TGGCGATTGAGAGTTCAACG 58.572 50.000 0.00 0.00 45.54 4.10
1625 1658 3.498397 TCTTTGGCGATTGAGAGTTCAAC 59.502 43.478 0.00 0.00 45.54 3.18
1627 1660 3.067106 GTCTTTGGCGATTGAGAGTTCA 58.933 45.455 0.00 0.00 0.00 3.18
1628 1661 3.330267 AGTCTTTGGCGATTGAGAGTTC 58.670 45.455 0.00 0.00 0.00 3.01
1631 1680 3.849911 TGTAGTCTTTGGCGATTGAGAG 58.150 45.455 0.00 0.00 0.00 3.20
1644 1693 5.634020 GCTCGTGTAGTTTGATTGTAGTCTT 59.366 40.000 0.00 0.00 0.00 3.01
1645 1694 5.162075 GCTCGTGTAGTTTGATTGTAGTCT 58.838 41.667 0.00 0.00 0.00 3.24
1646 1695 4.921515 TGCTCGTGTAGTTTGATTGTAGTC 59.078 41.667 0.00 0.00 0.00 2.59
1647 1696 4.878439 TGCTCGTGTAGTTTGATTGTAGT 58.122 39.130 0.00 0.00 0.00 2.73
1648 1697 5.161358 TCTGCTCGTGTAGTTTGATTGTAG 58.839 41.667 2.54 0.00 0.00 2.74
1649 1698 5.128992 TCTGCTCGTGTAGTTTGATTGTA 57.871 39.130 2.54 0.00 0.00 2.41
1650 1699 3.990092 TCTGCTCGTGTAGTTTGATTGT 58.010 40.909 2.54 0.00 0.00 2.71
1651 1700 3.369147 CCTCTGCTCGTGTAGTTTGATTG 59.631 47.826 2.54 0.00 0.00 2.67
1652 1701 3.589988 CCTCTGCTCGTGTAGTTTGATT 58.410 45.455 2.54 0.00 0.00 2.57
1653 1702 2.675317 GCCTCTGCTCGTGTAGTTTGAT 60.675 50.000 2.54 0.00 33.53 2.57
1654 1703 1.336887 GCCTCTGCTCGTGTAGTTTGA 60.337 52.381 2.54 0.00 33.53 2.69
1655 1704 1.071605 GCCTCTGCTCGTGTAGTTTG 58.928 55.000 2.54 0.00 33.53 2.93
1947 2011 4.091939 GGGTAGGGCCACACGGAC 62.092 72.222 6.18 0.00 41.20 4.79
2058 2122 1.606885 CCGGGTTACCAGCTAACGGA 61.607 60.000 8.47 0.00 42.19 4.69
2105 2179 1.135046 CACAGCAAGTCAGTCACTCG 58.865 55.000 0.00 0.00 32.30 4.18
2107 2181 2.169352 AGAACACAGCAAGTCAGTCACT 59.831 45.455 0.00 0.00 36.64 3.41
2335 2422 2.829458 GGAGGACGAGGGTCGGAG 60.829 72.222 0.86 0.00 45.59 4.63
2398 2488 2.249844 AACAGTGGAGGTTTACACGG 57.750 50.000 0.00 0.00 42.25 4.94
2429 2519 4.581824 GCAATCATCAGGGCTTCAGATTTA 59.418 41.667 0.00 0.00 0.00 1.40
2442 2532 5.363101 ACACTACATACTGGCAATCATCAG 58.637 41.667 0.00 0.00 37.07 2.90
2464 2554 4.789012 TGATGGAATTCCTTCAGCAAAC 57.211 40.909 29.85 11.11 42.89 2.93
2470 2560 2.291089 TGCTGCTGATGGAATTCCTTCA 60.291 45.455 30.76 30.76 44.74 3.02
2471 2561 2.358267 CTGCTGCTGATGGAATTCCTTC 59.642 50.000 26.18 26.18 39.77 3.46
2472 2562 2.025605 TCTGCTGCTGATGGAATTCCTT 60.026 45.455 24.73 18.79 36.82 3.36
2496 2591 3.607490 AGCAAAGCCATGGGAATATCT 57.393 42.857 15.13 0.00 0.00 1.98
2497 2592 3.638160 TGAAGCAAAGCCATGGGAATATC 59.362 43.478 15.13 0.00 0.00 1.63
2498 2593 3.640029 CTGAAGCAAAGCCATGGGAATAT 59.360 43.478 15.13 0.00 0.00 1.28
2499 2594 3.025978 CTGAAGCAAAGCCATGGGAATA 58.974 45.455 15.13 0.00 0.00 1.75
2508 2612 2.620585 AGTTGAAGACTGAAGCAAAGCC 59.379 45.455 0.00 0.00 37.17 4.35
2510 2614 7.251704 TCTAAAGTTGAAGACTGAAGCAAAG 57.748 36.000 0.00 0.00 39.00 2.77
2536 2640 7.473735 ACATCGTATACAGGAGATGAATGAT 57.526 36.000 19.28 1.93 42.04 2.45
2537 2641 6.901081 ACATCGTATACAGGAGATGAATGA 57.099 37.500 19.28 0.00 42.04 2.57
2538 2642 9.943163 CTATACATCGTATACAGGAGATGAATG 57.057 37.037 19.28 6.94 42.04 2.67
2539 2643 9.688091 ACTATACATCGTATACAGGAGATGAAT 57.312 33.333 19.28 6.30 42.04 2.57
2540 2644 8.947115 CACTATACATCGTATACAGGAGATGAA 58.053 37.037 19.28 8.17 42.04 2.57
2541 2645 8.319146 TCACTATACATCGTATACAGGAGATGA 58.681 37.037 19.28 8.33 42.04 2.92
2542 2646 8.494016 TCACTATACATCGTATACAGGAGATG 57.506 38.462 13.70 13.70 44.22 2.90
2543 2647 7.281324 GCTCACTATACATCGTATACAGGAGAT 59.719 40.741 3.32 0.00 0.00 2.75
2544 2648 6.594547 GCTCACTATACATCGTATACAGGAGA 59.405 42.308 3.32 0.00 0.00 3.71
2545 2649 6.596106 AGCTCACTATACATCGTATACAGGAG 59.404 42.308 3.32 2.18 0.00 3.69
2546 2650 6.371825 CAGCTCACTATACATCGTATACAGGA 59.628 42.308 3.32 0.00 0.00 3.86
2547 2651 6.403746 CCAGCTCACTATACATCGTATACAGG 60.404 46.154 3.32 0.00 0.00 4.00
2548 2652 6.403746 CCCAGCTCACTATACATCGTATACAG 60.404 46.154 3.32 0.00 0.00 2.74
2549 2653 5.414765 CCCAGCTCACTATACATCGTATACA 59.585 44.000 3.32 0.00 0.00 2.29
2550 2654 5.676584 GCCCAGCTCACTATACATCGTATAC 60.677 48.000 0.00 0.00 0.00 1.47
2551 2655 4.398358 GCCCAGCTCACTATACATCGTATA 59.602 45.833 0.00 0.00 0.00 1.47
2552 2656 3.193691 GCCCAGCTCACTATACATCGTAT 59.806 47.826 0.00 0.00 0.00 3.06
2553 2657 2.557056 GCCCAGCTCACTATACATCGTA 59.443 50.000 0.00 0.00 0.00 3.43
2554 2658 1.341531 GCCCAGCTCACTATACATCGT 59.658 52.381 0.00 0.00 0.00 3.73
2555 2659 1.337260 GGCCCAGCTCACTATACATCG 60.337 57.143 0.00 0.00 0.00 3.84
2556 2660 1.337260 CGGCCCAGCTCACTATACATC 60.337 57.143 0.00 0.00 0.00 3.06
2557 2661 0.681733 CGGCCCAGCTCACTATACAT 59.318 55.000 0.00 0.00 0.00 2.29
2558 2662 1.399744 CCGGCCCAGCTCACTATACA 61.400 60.000 0.00 0.00 0.00 2.29
2559 2663 1.367840 CCGGCCCAGCTCACTATAC 59.632 63.158 0.00 0.00 0.00 1.47
2560 2664 2.507854 GCCGGCCCAGCTCACTATA 61.508 63.158 18.11 0.00 0.00 1.31
2561 2665 3.866582 GCCGGCCCAGCTCACTAT 61.867 66.667 18.11 0.00 0.00 2.12
2573 2677 3.662117 AAGGGAAAGATGGGCCGGC 62.662 63.158 21.18 21.18 0.00 6.13
2574 2678 1.754234 CAAGGGAAAGATGGGCCGG 60.754 63.158 0.00 0.00 0.00 6.13
2575 2679 0.254747 TACAAGGGAAAGATGGGCCG 59.745 55.000 0.00 0.00 0.00 6.13
2576 2680 1.005450 TGTACAAGGGAAAGATGGGCC 59.995 52.381 0.00 0.00 0.00 5.80
2577 2681 2.507407 TGTACAAGGGAAAGATGGGC 57.493 50.000 0.00 0.00 0.00 5.36
2578 2682 6.358974 AATTTTGTACAAGGGAAAGATGGG 57.641 37.500 8.56 0.00 0.00 4.00
2579 2683 6.072175 TCGAATTTTGTACAAGGGAAAGATGG 60.072 38.462 8.56 0.00 0.00 3.51
2580 2684 6.801862 GTCGAATTTTGTACAAGGGAAAGATG 59.198 38.462 8.56 0.00 0.00 2.90
2581 2685 6.348213 CGTCGAATTTTGTACAAGGGAAAGAT 60.348 38.462 8.56 0.00 0.00 2.40
2582 2686 5.049954 CGTCGAATTTTGTACAAGGGAAAGA 60.050 40.000 8.56 3.44 0.00 2.52
2583 2687 5.144359 CGTCGAATTTTGTACAAGGGAAAG 58.856 41.667 8.56 1.16 0.00 2.62
2584 2688 4.575645 ACGTCGAATTTTGTACAAGGGAAA 59.424 37.500 8.56 0.49 0.00 3.13
2585 2689 4.024725 CACGTCGAATTTTGTACAAGGGAA 60.025 41.667 8.56 0.87 0.00 3.97
2586 2690 3.495377 CACGTCGAATTTTGTACAAGGGA 59.505 43.478 8.56 0.00 0.00 4.20
2587 2691 3.495377 TCACGTCGAATTTTGTACAAGGG 59.505 43.478 8.56 0.00 0.00 3.95
2588 2692 4.718858 TCACGTCGAATTTTGTACAAGG 57.281 40.909 8.56 0.00 0.00 3.61
2589 2693 6.735063 GGTTATCACGTCGAATTTTGTACAAG 59.265 38.462 8.56 0.00 0.00 3.16
2590 2694 6.202379 TGGTTATCACGTCGAATTTTGTACAA 59.798 34.615 3.59 3.59 0.00 2.41
2591 2695 5.695363 TGGTTATCACGTCGAATTTTGTACA 59.305 36.000 0.00 0.00 0.00 2.90
2592 2696 6.155691 TGGTTATCACGTCGAATTTTGTAC 57.844 37.500 0.00 0.00 0.00 2.90
2593 2697 6.347563 GGTTGGTTATCACGTCGAATTTTGTA 60.348 38.462 0.00 0.00 0.00 2.41
2594 2698 5.445845 GTTGGTTATCACGTCGAATTTTGT 58.554 37.500 0.00 0.00 0.00 2.83
2595 2699 4.849383 GGTTGGTTATCACGTCGAATTTTG 59.151 41.667 0.00 0.00 0.00 2.44
2596 2700 4.377635 CGGTTGGTTATCACGTCGAATTTT 60.378 41.667 0.00 0.00 0.00 1.82
2597 2701 3.123959 CGGTTGGTTATCACGTCGAATTT 59.876 43.478 0.00 0.00 0.00 1.82
2598 2702 2.669434 CGGTTGGTTATCACGTCGAATT 59.331 45.455 0.00 0.00 0.00 2.17
2599 2703 2.264813 CGGTTGGTTATCACGTCGAAT 58.735 47.619 0.00 0.00 0.00 3.34
2600 2704 1.669502 CCGGTTGGTTATCACGTCGAA 60.670 52.381 0.00 0.00 0.00 3.71
2601 2705 0.109179 CCGGTTGGTTATCACGTCGA 60.109 55.000 0.00 0.00 0.00 4.20
2602 2706 1.689352 GCCGGTTGGTTATCACGTCG 61.689 60.000 1.90 0.00 37.67 5.12
2603 2707 1.689352 CGCCGGTTGGTTATCACGTC 61.689 60.000 1.90 0.00 37.67 4.34
2604 2708 1.738830 CGCCGGTTGGTTATCACGT 60.739 57.895 1.90 0.00 37.67 4.49
2605 2709 1.446445 TCGCCGGTTGGTTATCACG 60.446 57.895 1.90 0.00 37.67 4.35
2606 2710 0.390735 AGTCGCCGGTTGGTTATCAC 60.391 55.000 1.90 0.00 37.67 3.06
2607 2711 0.322322 AAGTCGCCGGTTGGTTATCA 59.678 50.000 1.90 0.00 37.67 2.15
2608 2712 0.725117 CAAGTCGCCGGTTGGTTATC 59.275 55.000 1.90 0.00 37.67 1.75
2609 2713 0.322322 TCAAGTCGCCGGTTGGTTAT 59.678 50.000 1.90 0.00 37.67 1.89
2610 2714 0.320073 CTCAAGTCGCCGGTTGGTTA 60.320 55.000 1.90 0.00 37.67 2.85
2611 2715 1.597027 CTCAAGTCGCCGGTTGGTT 60.597 57.895 1.90 0.00 37.67 3.67
2612 2716 2.030562 CTCAAGTCGCCGGTTGGT 59.969 61.111 1.90 0.00 37.67 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.