Multiple sequence alignment - TraesCS4A01G293900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G293900 chr4A 100.000 2803 0 0 1 2803 595548815 595551617 0.000000e+00 5177.0
1 TraesCS4A01G293900 chr4D 91.588 844 47 17 1076 1903 7843345 7842510 0.000000e+00 1144.0
2 TraesCS4A01G293900 chr4D 86.420 729 51 20 1 701 7844525 7843817 0.000000e+00 754.0
3 TraesCS4A01G293900 chr4D 85.714 154 11 7 2657 2803 7842392 7842243 4.840000e-33 152.0
4 TraesCS4A01G293900 chr4D 91.753 97 8 0 980 1076 7843474 7843378 4.870000e-28 135.0
5 TraesCS4A01G293900 chr4B 83.156 1033 100 39 1083 2066 14109045 14110052 0.000000e+00 876.0
6 TraesCS4A01G293900 chr4B 86.190 811 74 18 1 773 14107428 14108238 0.000000e+00 843.0
7 TraesCS4A01G293900 chr4B 83.430 344 41 9 1592 1935 618861819 618862146 3.510000e-79 305.0
8 TraesCS4A01G293900 chr6A 94.017 234 12 1 2069 2300 1261456 1261223 1.240000e-93 353.0
9 TraesCS4A01G293900 chr6A 94.845 194 6 1 2297 2490 596547335 596547146 1.630000e-77 300.0
10 TraesCS4A01G293900 chr6A 82.849 344 43 9 1592 1935 41189630 41189303 7.590000e-76 294.0
11 TraesCS4A01G293900 chr5A 92.827 237 15 1 2066 2300 641123424 641123188 2.670000e-90 342.0
12 TraesCS4A01G293900 chr5A 91.837 196 12 1 2297 2492 641122857 641122666 1.280000e-68 270.0
13 TraesCS4A01G293900 chr6B 92.766 235 15 1 2068 2300 2154898 2154664 3.460000e-89 339.0
14 TraesCS4A01G293900 chr6B 92.857 196 10 1 2297 2492 2154333 2154142 5.910000e-72 281.0
15 TraesCS4A01G293900 chr6D 83.333 354 44 8 1593 1946 375307492 375307830 2.100000e-81 313.0
16 TraesCS4A01G293900 chr3B 90.377 239 18 4 2066 2300 793517013 793517250 2.710000e-80 309.0
17 TraesCS4A01G293900 chr3B 92.670 191 10 1 2297 2487 793517581 793517767 3.560000e-69 272.0
18 TraesCS4A01G293900 chr3B 87.342 237 28 1 2066 2300 712746124 712746360 1.280000e-68 270.0
19 TraesCS4A01G293900 chr3B 89.595 173 18 0 2297 2469 712746690 712746862 1.310000e-53 220.0
20 TraesCS4A01G293900 chr2B 90.336 238 19 2 2066 2300 57657681 57657445 2.710000e-80 309.0
21 TraesCS4A01G293900 chr2B 92.268 194 11 1 2297 2490 57657114 57656925 3.560000e-69 272.0
22 TraesCS4A01G293900 chr5D 82.486 354 49 6 1593 1946 368407610 368407950 5.870000e-77 298.0
23 TraesCS4A01G293900 chr5D 88.655 238 24 2 2066 2300 322949687 322949924 1.270000e-73 287.0
24 TraesCS4A01G293900 chr1A 82.808 349 45 10 1593 1941 585729366 585729033 5.870000e-77 298.0
25 TraesCS4A01G293900 chr1A 94.330 194 7 3 2297 2490 570251044 570251233 7.590000e-76 294.0
26 TraesCS4A01G293900 chr3D 82.000 350 47 11 1586 1935 394632393 394632060 1.640000e-72 283.0
27 TraesCS4A01G293900 chr7D 82.267 344 42 14 1592 1935 17136167 17135843 2.130000e-71 279.0
28 TraesCS4A01G293900 chr7D 91.329 173 14 1 2297 2469 539751056 539750885 4.670000e-58 235.0
29 TraesCS4A01G293900 chr7D 100.000 28 0 0 2576 2603 591851911 591851884 5.000000e-03 52.8
30 TraesCS4A01G293900 chr2A 86.017 236 31 1 2067 2300 140630648 140630883 4.630000e-63 252.0
31 TraesCS4A01G293900 chr1D 85.128 195 23 4 2297 2491 404558134 404558322 7.920000e-46 195.0
32 TraesCS4A01G293900 chr5B 89.109 101 10 1 1368 1467 13361449 13361349 1.050000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G293900 chr4A 595548815 595551617 2802 False 5177.00 5177 100.00000 1 2803 1 chr4A.!!$F1 2802
1 TraesCS4A01G293900 chr4D 7842243 7844525 2282 True 546.25 1144 88.86875 1 2803 4 chr4D.!!$R1 2802
2 TraesCS4A01G293900 chr4B 14107428 14110052 2624 False 859.50 876 84.67300 1 2066 2 chr4B.!!$F2 2065
3 TraesCS4A01G293900 chr5A 641122666 641123424 758 True 306.00 342 92.33200 2066 2492 2 chr5A.!!$R1 426
4 TraesCS4A01G293900 chr6B 2154142 2154898 756 True 310.00 339 92.81150 2068 2492 2 chr6B.!!$R1 424
5 TraesCS4A01G293900 chr3B 793517013 793517767 754 False 290.50 309 91.52350 2066 2487 2 chr3B.!!$F2 421
6 TraesCS4A01G293900 chr3B 712746124 712746862 738 False 245.00 270 88.46850 2066 2469 2 chr3B.!!$F1 403
7 TraesCS4A01G293900 chr2B 57656925 57657681 756 True 290.50 309 91.30200 2066 2490 2 chr2B.!!$R1 424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 102 0.036105 CACTACATGCTGCCCACTGA 60.036 55.0 0.0 0.0 0.0 3.41 F
650 701 0.094216 CTGAGAGCACGATTGTTGCG 59.906 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 1934 0.033920 GGCAAAAGGGAAACAGCAGG 59.966 55.0 0.00 0.0 0.00 4.85 R
1984 2630 0.035725 TGCTGGAGTTCAGATGCTGG 60.036 55.0 1.33 0.0 46.18 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.547413 GCGAACAACAACCTAAACCTCAC 60.547 47.826 0.00 0.00 0.00 3.51
31 32 3.002965 CGAACAACAACCTAAACCTCACC 59.997 47.826 0.00 0.00 0.00 4.02
53 54 3.605634 TGTTGGTCATATAACTTGCGCT 58.394 40.909 9.73 0.00 0.00 5.92
98 102 0.036105 CACTACATGCTGCCCACTGA 60.036 55.000 0.00 0.00 0.00 3.41
112 116 5.211973 TGCCCACTGATCTATACTTCTCTT 58.788 41.667 0.00 0.00 0.00 2.85
121 125 8.786826 TGATCTATACTTCTCTTCTAGCTAGC 57.213 38.462 16.35 6.62 0.00 3.42
147 152 4.640789 TTGTGCCGTTTATCTGTTTGTT 57.359 36.364 0.00 0.00 0.00 2.83
178 183 1.896220 TTGTGCTGTTCTTAGGCTGG 58.104 50.000 0.00 0.00 0.00 4.85
188 193 2.803956 TCTTAGGCTGGAGACGAAGAA 58.196 47.619 2.81 0.00 40.94 2.52
224 229 2.435938 GAACCGGATTCAGGCGCA 60.436 61.111 9.46 0.00 37.27 6.09
280 285 1.229359 CAGGATCTGCCCTGCCAAT 59.771 57.895 0.00 0.00 46.16 3.16
305 319 5.527026 AGAGGAAAAGGGACAATGAAGAT 57.473 39.130 0.00 0.00 0.00 2.40
307 321 3.766051 AGGAAAAGGGACAATGAAGATGC 59.234 43.478 0.00 0.00 0.00 3.91
308 322 3.766051 GGAAAAGGGACAATGAAGATGCT 59.234 43.478 0.00 0.00 0.00 3.79
309 323 4.381292 GGAAAAGGGACAATGAAGATGCTG 60.381 45.833 0.00 0.00 0.00 4.41
310 324 1.760192 AGGGACAATGAAGATGCTGC 58.240 50.000 0.00 0.00 0.00 5.25
311 325 1.284198 AGGGACAATGAAGATGCTGCT 59.716 47.619 0.00 0.00 0.00 4.24
312 326 1.404391 GGGACAATGAAGATGCTGCTG 59.596 52.381 0.00 0.00 0.00 4.41
313 327 1.404391 GGACAATGAAGATGCTGCTGG 59.596 52.381 0.00 0.00 0.00 4.85
314 328 2.089980 GACAATGAAGATGCTGCTGGT 58.910 47.619 0.00 0.00 0.00 4.00
315 329 1.816835 ACAATGAAGATGCTGCTGGTG 59.183 47.619 0.00 0.00 0.00 4.17
316 330 1.134367 CAATGAAGATGCTGCTGGTGG 59.866 52.381 0.00 0.00 0.00 4.61
317 331 0.622136 ATGAAGATGCTGCTGGTGGA 59.378 50.000 0.00 0.00 0.00 4.02
341 355 5.409826 AGACAACTGAATTTGATCTCGGTTC 59.590 40.000 4.38 0.47 38.76 3.62
356 370 1.478916 CGGTTCAAGGTTTGTGGGTTT 59.521 47.619 0.00 0.00 0.00 3.27
382 397 0.668535 GCACGCTTTTCAGAGGGTTT 59.331 50.000 0.00 0.00 40.38 3.27
383 398 1.067060 GCACGCTTTTCAGAGGGTTTT 59.933 47.619 0.00 0.00 40.38 2.43
394 409 3.680786 GGGTTTTGTGCGGGAGGC 61.681 66.667 0.00 0.00 43.96 4.70
404 422 2.105128 CGGGAGGCGTAGAAGCAG 59.895 66.667 0.00 0.00 39.27 4.24
422 444 2.288213 GCAGGCAACCTTGGTAGTTTTC 60.288 50.000 0.00 0.00 37.17 2.29
523 550 4.139786 TCTGGTACTATAAATCGAGGCGT 58.860 43.478 0.00 0.00 0.00 5.68
574 607 6.543465 TCTTCATCATGGCTGTAATGTAAAGG 59.457 38.462 0.00 0.00 0.00 3.11
602 635 5.497474 ACTCCGTTTTTCATTGGTAGCTAT 58.503 37.500 0.00 0.00 0.00 2.97
604 637 6.761714 ACTCCGTTTTTCATTGGTAGCTATAG 59.238 38.462 0.00 0.00 0.00 1.31
605 638 6.053005 TCCGTTTTTCATTGGTAGCTATAGG 58.947 40.000 0.00 0.00 0.00 2.57
606 639 5.238650 CCGTTTTTCATTGGTAGCTATAGGG 59.761 44.000 0.00 0.00 0.00 3.53
607 640 5.277828 CGTTTTTCATTGGTAGCTATAGGGC 60.278 44.000 0.00 0.00 0.00 5.19
609 642 1.275291 TCATTGGTAGCTATAGGGCGC 59.725 52.381 0.00 0.00 37.29 6.53
612 645 2.504244 GTAGCTATAGGGCGCGCG 60.504 66.667 28.44 28.44 37.29 6.86
638 689 4.819082 CTCTCTGCAGCTGAGAGC 57.181 61.111 33.90 11.42 44.84 4.09
650 701 0.094216 CTGAGAGCACGATTGTTGCG 59.906 55.000 0.00 0.00 0.00 4.85
682 733 2.573083 CCAGTTTGGGCGTGGCATT 61.573 57.895 0.00 0.00 32.67 3.56
683 734 1.373246 CAGTTTGGGCGTGGCATTG 60.373 57.895 0.00 0.00 0.00 2.82
689 740 3.799755 GGCGTGGCATTGTCGACC 61.800 66.667 14.12 0.00 0.00 4.79
724 775 5.221126 CCCTTGAGAAGAAAAGTTCAGTTGG 60.221 44.000 0.00 0.00 0.00 3.77
726 777 6.095440 CCTTGAGAAGAAAAGTTCAGTTGGAA 59.905 38.462 0.00 0.00 0.00 3.53
731 782 7.267857 AGAAGAAAAGTTCAGTTGGAATTTGG 58.732 34.615 0.00 0.00 35.82 3.28
748 799 7.396055 TGGAATTTGGGATCTTAAAATCGAGTT 59.604 33.333 0.00 0.00 0.00 3.01
752 803 6.985188 TGGGATCTTAAAATCGAGTTGAAG 57.015 37.500 15.22 15.22 0.00 3.02
757 808 7.970614 GGATCTTAAAATCGAGTTGAAGCATTT 59.029 33.333 16.32 3.20 0.00 2.32
761 815 6.753897 AAAATCGAGTTGAAGCATTTTCAC 57.246 33.333 0.00 0.00 0.00 3.18
773 827 3.132646 AGCATTTTCACTGGCTTGTTCAA 59.867 39.130 0.00 0.00 31.34 2.69
774 828 3.870419 GCATTTTCACTGGCTTGTTCAAA 59.130 39.130 0.00 0.00 0.00 2.69
775 829 4.025480 GCATTTTCACTGGCTTGTTCAAAG 60.025 41.667 0.00 0.00 0.00 2.77
776 830 2.869233 TTCACTGGCTTGTTCAAAGC 57.131 45.000 1.41 1.41 42.30 3.51
779 858 1.406539 CACTGGCTTGTTCAAAGCAGT 59.593 47.619 11.79 9.85 44.71 4.40
787 866 5.181245 GGCTTGTTCAAAGCAGTACATAGAA 59.819 40.000 11.79 0.00 44.71 2.10
795 874 4.065321 AGCAGTACATAGAACATCTGCC 57.935 45.455 10.60 0.00 46.03 4.85
799 878 5.423015 CAGTACATAGAACATCTGCCAACT 58.577 41.667 0.00 0.00 0.00 3.16
801 880 6.699204 CAGTACATAGAACATCTGCCAACTAG 59.301 42.308 0.00 0.00 0.00 2.57
810 889 1.168714 CTGCCAACTAGTTTGAGGGC 58.831 55.000 21.91 21.91 41.70 5.19
816 895 3.263425 CCAACTAGTTTGAGGGCTCCTTA 59.737 47.826 5.07 0.00 37.39 2.69
820 899 1.630878 AGTTTGAGGGCTCCTTACCAG 59.369 52.381 0.00 0.00 31.76 4.00
821 900 1.628846 GTTTGAGGGCTCCTTACCAGA 59.371 52.381 0.00 0.00 31.76 3.86
830 909 2.100197 CTCCTTACCAGATGGACGTGA 58.900 52.381 5.72 0.00 38.94 4.35
837 916 2.236146 ACCAGATGGACGTGAAATAGCA 59.764 45.455 5.72 0.00 38.94 3.49
841 920 0.739462 TGGACGTGAAATAGCAGCGG 60.739 55.000 0.00 0.00 0.00 5.52
848 927 3.608241 CGTGAAATAGCAGCGGTCAAAAA 60.608 43.478 0.00 0.00 0.00 1.94
870 949 3.600388 ACTAGACAAGGCATACAACAGC 58.400 45.455 0.00 0.00 0.00 4.40
871 950 2.566833 AGACAAGGCATACAACAGCA 57.433 45.000 0.00 0.00 0.00 4.41
872 951 2.430465 AGACAAGGCATACAACAGCAG 58.570 47.619 0.00 0.00 0.00 4.24
875 1093 1.470098 CAAGGCATACAACAGCAGGTC 59.530 52.381 0.00 0.00 0.00 3.85
879 1097 3.054434 AGGCATACAACAGCAGGTCATAA 60.054 43.478 0.00 0.00 0.00 1.90
883 1101 6.207417 GGCATACAACAGCAGGTCATAATAAT 59.793 38.462 0.00 0.00 0.00 1.28
884 1102 7.080099 GCATACAACAGCAGGTCATAATAATG 58.920 38.462 0.00 0.00 0.00 1.90
887 1105 9.845740 ATACAACAGCAGGTCATAATAATGTTA 57.154 29.630 0.00 0.00 34.50 2.41
889 1107 9.189156 ACAACAGCAGGTCATAATAATGTTAAT 57.811 29.630 0.00 0.00 34.50 1.40
916 1134 6.549952 ACTAGTCGTGGATAAAAAGTAGTCG 58.450 40.000 0.00 0.00 0.00 4.18
918 1136 6.500684 AGTCGTGGATAAAAAGTAGTCGTA 57.499 37.500 0.00 0.00 0.00 3.43
920 1138 5.225949 GTCGTGGATAAAAAGTAGTCGTACG 59.774 44.000 9.53 9.53 33.97 3.67
921 1139 5.121611 TCGTGGATAAAAAGTAGTCGTACGA 59.878 40.000 15.28 15.28 33.97 3.43
942 1366 9.539139 GTACGAAAATTTAGGAGAAAAGTTAGC 57.461 33.333 0.00 0.00 0.00 3.09
943 1367 7.295930 ACGAAAATTTAGGAGAAAAGTTAGCG 58.704 34.615 0.00 0.00 34.00 4.26
944 1368 7.172019 ACGAAAATTTAGGAGAAAAGTTAGCGA 59.828 33.333 0.00 0.00 33.05 4.93
945 1369 8.175716 CGAAAATTTAGGAGAAAAGTTAGCGAT 58.824 33.333 0.00 0.00 31.73 4.58
946 1370 9.278734 GAAAATTTAGGAGAAAAGTTAGCGATG 57.721 33.333 0.00 0.00 0.00 3.84
947 1371 8.561738 AAATTTAGGAGAAAAGTTAGCGATGA 57.438 30.769 0.00 0.00 0.00 2.92
948 1372 8.738645 AATTTAGGAGAAAAGTTAGCGATGAT 57.261 30.769 0.00 0.00 0.00 2.45
949 1373 7.539712 TTTAGGAGAAAAGTTAGCGATGATG 57.460 36.000 0.00 0.00 0.00 3.07
950 1374 4.446371 AGGAGAAAAGTTAGCGATGATGG 58.554 43.478 0.00 0.00 0.00 3.51
951 1375 4.080863 AGGAGAAAAGTTAGCGATGATGGT 60.081 41.667 0.00 0.00 0.00 3.55
952 1376 5.128827 AGGAGAAAAGTTAGCGATGATGGTA 59.871 40.000 0.00 0.00 0.00 3.25
953 1377 5.234543 GGAGAAAAGTTAGCGATGATGGTAC 59.765 44.000 0.00 0.00 0.00 3.34
987 1552 5.941948 AGTTGGTAAAAATCTTGGACGAG 57.058 39.130 0.00 0.00 0.00 4.18
991 1556 0.521735 AAAAATCTTGGACGAGCGGC 59.478 50.000 0.00 0.00 0.00 6.53
1091 1698 1.743252 GCCTCAACGCCTCTCCTTG 60.743 63.158 0.00 0.00 0.00 3.61
1093 1700 0.390472 CCTCAACGCCTCTCCTTGTC 60.390 60.000 0.00 0.00 0.00 3.18
1124 1731 4.021925 GCCACCGAGAACCCTGCT 62.022 66.667 0.00 0.00 0.00 4.24
1125 1732 2.266055 CCACCGAGAACCCTGCTC 59.734 66.667 0.00 0.00 0.00 4.26
1206 1813 1.747355 CACAAGATCACCAAGATGGCC 59.253 52.381 0.00 0.00 42.67 5.36
1301 1908 2.490217 CCTCTCCAGGTACGCACG 59.510 66.667 0.00 0.00 34.60 5.34
1302 1909 2.341101 CCTCTCCAGGTACGCACGT 61.341 63.158 0.00 0.00 34.60 4.49
1310 1917 2.165301 GGTACGCACGTGCTCCATC 61.165 63.158 35.27 18.07 39.32 3.51
1312 1919 2.985117 TACGCACGTGCTCCATCGT 61.985 57.895 35.27 26.09 40.99 3.73
1315 1922 2.730672 GCACGTGCTCCATCGTCAC 61.731 63.158 32.55 0.00 38.23 3.67
1316 1923 1.372872 CACGTGCTCCATCGTCACA 60.373 57.895 0.82 0.00 38.23 3.58
1317 1924 0.737367 CACGTGCTCCATCGTCACAT 60.737 55.000 0.82 0.00 38.23 3.21
1319 1926 1.203758 ACGTGCTCCATCGTCACATAA 59.796 47.619 0.00 0.00 35.30 1.90
1321 1928 2.219445 CGTGCTCCATCGTCACATAATG 59.781 50.000 0.00 0.00 0.00 1.90
1322 1929 2.032549 GTGCTCCATCGTCACATAATGC 60.033 50.000 0.00 0.00 0.00 3.56
1324 1931 2.808202 GCTCCATCGTCACATAATGCCT 60.808 50.000 0.00 0.00 0.00 4.75
1325 1932 3.470709 CTCCATCGTCACATAATGCCTT 58.529 45.455 0.00 0.00 0.00 4.35
1326 1933 3.205338 TCCATCGTCACATAATGCCTTG 58.795 45.455 0.00 0.00 0.00 3.61
1327 1934 2.287188 CCATCGTCACATAATGCCTTGC 60.287 50.000 0.00 0.00 0.00 4.01
1329 1936 1.065491 TCGTCACATAATGCCTTGCCT 60.065 47.619 0.00 0.00 0.00 4.75
1331 1938 1.105457 TCACATAATGCCTTGCCTGC 58.895 50.000 0.00 0.00 0.00 4.85
1332 1939 1.108776 CACATAATGCCTTGCCTGCT 58.891 50.000 0.00 0.00 0.00 4.24
1333 1940 1.108776 ACATAATGCCTTGCCTGCTG 58.891 50.000 0.00 0.00 0.00 4.41
1344 1963 0.752054 TGCCTGCTGTTTCCCTTTTG 59.248 50.000 0.00 0.00 0.00 2.44
1354 1979 0.827507 TTCCCTTTTGCCCTGACTGC 60.828 55.000 0.00 0.00 0.00 4.40
1366 1991 0.108898 CTGACTGCTTCTCTGTCCGG 60.109 60.000 0.00 0.00 41.34 5.14
1531 2164 0.591170 CGGGTGTTTGACGAAATGCT 59.409 50.000 0.00 0.00 0.00 3.79
1538 2171 1.573829 TTGACGAAATGCTCACCGCC 61.574 55.000 0.00 0.00 38.05 6.13
1547 2180 2.805353 CTCACCGCCTCGTTCGTG 60.805 66.667 0.00 0.00 0.00 4.35
1658 2291 1.512926 GTGTCGTGCTCTTCAACCAT 58.487 50.000 0.00 0.00 0.00 3.55
1673 2306 1.064825 ACCATTCGGAGGTGGACTTT 58.935 50.000 15.70 0.00 38.13 2.66
1721 2354 3.752665 GCAGATGATCATCCAGGTGATT 58.247 45.455 28.23 7.91 38.88 2.57
1722 2355 4.562143 CGCAGATGATCATCCAGGTGATTA 60.562 45.833 28.23 0.00 38.88 1.75
1730 2363 1.216977 CCAGGTGATTACGACGCCA 59.783 57.895 0.00 0.00 39.99 5.69
1734 2367 0.454600 GGTGATTACGACGCCAGAGA 59.545 55.000 0.00 0.00 37.78 3.10
1784 2417 2.933834 CGTGGGGAGGGAGGGTTT 60.934 66.667 0.00 0.00 0.00 3.27
1799 2432 4.192453 TTTGGGTCCACCGGCGTT 62.192 61.111 6.01 0.00 44.64 4.84
1806 2439 2.978010 CCACCGGCGTTTGAGCTT 60.978 61.111 6.01 0.00 37.29 3.74
1909 2549 6.219417 TCTTTTGATGGTTGTGTCATTTGT 57.781 33.333 0.00 0.00 0.00 2.83
1910 2550 6.041511 TCTTTTGATGGTTGTGTCATTTGTG 58.958 36.000 0.00 0.00 0.00 3.33
1911 2551 4.998671 TTGATGGTTGTGTCATTTGTGT 57.001 36.364 0.00 0.00 0.00 3.72
1912 2552 4.304537 TGATGGTTGTGTCATTTGTGTG 57.695 40.909 0.00 0.00 0.00 3.82
1913 2553 3.698539 TGATGGTTGTGTCATTTGTGTGT 59.301 39.130 0.00 0.00 0.00 3.72
1914 2554 3.500558 TGGTTGTGTCATTTGTGTGTG 57.499 42.857 0.00 0.00 0.00 3.82
1915 2555 2.165234 TGGTTGTGTCATTTGTGTGTGG 59.835 45.455 0.00 0.00 0.00 4.17
1929 2569 2.486203 GTGTGTGGCCGATGTTAAATGA 59.514 45.455 0.00 0.00 0.00 2.57
1950 2590 3.451141 AATCTCGTGATCTCTTCCAGC 57.549 47.619 0.00 0.00 31.51 4.85
1952 2592 0.820226 CTCGTGATCTCTTCCAGCCA 59.180 55.000 0.00 0.00 0.00 4.75
1953 2593 0.820226 TCGTGATCTCTTCCAGCCAG 59.180 55.000 0.00 0.00 0.00 4.85
1954 2594 0.820226 CGTGATCTCTTCCAGCCAGA 59.180 55.000 0.00 0.00 0.00 3.86
1955 2595 1.411977 CGTGATCTCTTCCAGCCAGAT 59.588 52.381 0.00 0.00 0.00 2.90
1970 2616 5.426504 CAGCCAGATTAGAGAAGTTCATGT 58.573 41.667 5.50 0.00 0.00 3.21
1975 2621 6.318144 CCAGATTAGAGAAGTTCATGTTGCAT 59.682 38.462 5.50 0.00 0.00 3.96
1982 2628 8.375608 AGAGAAGTTCATGTTGCATATATGAC 57.624 34.615 17.10 7.21 31.11 3.06
1983 2629 8.209584 AGAGAAGTTCATGTTGCATATATGACT 58.790 33.333 17.10 5.37 31.11 3.41
1984 2630 8.375608 AGAAGTTCATGTTGCATATATGACTC 57.624 34.615 17.10 5.83 31.11 3.36
1986 2632 6.594744 AGTTCATGTTGCATATATGACTCCA 58.405 36.000 17.10 7.02 31.11 3.86
1987 2633 6.709397 AGTTCATGTTGCATATATGACTCCAG 59.291 38.462 17.10 2.11 31.11 3.86
1988 2634 4.999311 TCATGTTGCATATATGACTCCAGC 59.001 41.667 17.10 7.32 0.00 4.85
1989 2635 4.420522 TGTTGCATATATGACTCCAGCA 57.579 40.909 17.10 9.68 0.00 4.41
1990 2636 4.976864 TGTTGCATATATGACTCCAGCAT 58.023 39.130 17.10 0.00 0.00 3.79
1991 2637 4.999311 TGTTGCATATATGACTCCAGCATC 59.001 41.667 17.10 5.23 0.00 3.91
1992 2638 5.221783 TGTTGCATATATGACTCCAGCATCT 60.222 40.000 17.10 0.00 0.00 2.90
1994 2640 4.529377 TGCATATATGACTCCAGCATCTGA 59.471 41.667 17.10 0.00 32.44 3.27
1995 2641 5.012354 TGCATATATGACTCCAGCATCTGAA 59.988 40.000 17.10 0.00 32.44 3.02
1996 2642 5.350914 GCATATATGACTCCAGCATCTGAAC 59.649 44.000 17.10 0.00 32.44 3.18
1998 2644 3.540314 ATGACTCCAGCATCTGAACTC 57.460 47.619 0.00 0.00 32.44 3.01
1999 2645 1.552337 TGACTCCAGCATCTGAACTCC 59.448 52.381 0.00 0.00 32.44 3.85
2000 2646 1.552337 GACTCCAGCATCTGAACTCCA 59.448 52.381 0.00 0.00 32.44 3.86
2001 2647 1.554160 ACTCCAGCATCTGAACTCCAG 59.446 52.381 0.00 0.00 44.27 3.86
2002 2648 0.251354 TCCAGCATCTGAACTCCAGC 59.749 55.000 0.00 0.00 42.62 4.85
2003 2649 0.035725 CCAGCATCTGAACTCCAGCA 60.036 55.000 0.00 0.00 42.62 4.41
2005 2651 1.066358 CAGCATCTGAACTCCAGCAGA 60.066 52.381 0.00 0.00 44.43 4.26
2006 2652 1.627329 AGCATCTGAACTCCAGCAGAA 59.373 47.619 0.00 0.00 43.63 3.02
2007 2653 2.239150 AGCATCTGAACTCCAGCAGAAT 59.761 45.455 0.00 0.00 43.63 2.40
2009 2655 3.442977 GCATCTGAACTCCAGCAGAATTT 59.557 43.478 0.00 0.00 43.63 1.82
2015 2661 4.516698 TGAACTCCAGCAGAATTTTGAGTC 59.483 41.667 0.00 0.00 32.24 3.36
2016 2662 4.090761 ACTCCAGCAGAATTTTGAGTCA 57.909 40.909 0.00 0.00 0.00 3.41
2017 2663 4.070716 ACTCCAGCAGAATTTTGAGTCAG 58.929 43.478 0.00 0.00 0.00 3.51
2018 2664 4.070716 CTCCAGCAGAATTTTGAGTCAGT 58.929 43.478 0.00 0.00 0.00 3.41
2041 2689 1.076332 GTCGTGTGTATTGCAGACCC 58.924 55.000 0.00 0.00 38.04 4.46
2045 2693 2.350522 GTGTGTATTGCAGACCCTCTG 58.649 52.381 0.00 0.00 46.90 3.35
2059 2707 4.536090 AGACCCTCTGAATGTGGAATGTTA 59.464 41.667 0.00 0.00 0.00 2.41
2202 2851 6.276091 TCACTCACCATGAAGAAAGATATCG 58.724 40.000 0.00 0.00 0.00 2.92
2252 2901 1.779061 AATTGTGGGGACGCTGGAGT 61.779 55.000 0.00 0.00 42.82 3.85
2274 2925 2.904835 CCCCCACGACATACACCTA 58.095 57.895 0.00 0.00 0.00 3.08
2278 2929 1.470979 CCCACGACATACACCTACTGC 60.471 57.143 0.00 0.00 0.00 4.40
2451 3437 2.032550 CAGATTTGCTACCGCTGAATGG 59.967 50.000 0.00 0.00 36.97 3.16
2469 3455 2.814280 GGATAAAATCCGGAGAGCGA 57.186 50.000 11.34 0.00 40.13 4.93
2470 3456 2.678324 GGATAAAATCCGGAGAGCGAG 58.322 52.381 11.34 0.00 40.13 5.03
2471 3457 2.062519 GATAAAATCCGGAGAGCGAGC 58.937 52.381 11.34 0.00 0.00 5.03
2472 3458 0.248907 TAAAATCCGGAGAGCGAGCG 60.249 55.000 11.34 0.00 0.00 5.03
2515 3501 5.784578 AAAACTGGACCAAATCAACCTAC 57.215 39.130 0.00 0.00 0.00 3.18
2516 3502 3.053831 ACTGGACCAAATCAACCTACG 57.946 47.619 0.00 0.00 0.00 3.51
2517 3503 2.370849 ACTGGACCAAATCAACCTACGT 59.629 45.455 0.00 0.00 0.00 3.57
2518 3504 2.742053 CTGGACCAAATCAACCTACGTG 59.258 50.000 0.00 0.00 0.00 4.49
2519 3505 1.467342 GGACCAAATCAACCTACGTGC 59.533 52.381 0.00 0.00 0.00 5.34
2520 3506 2.147958 GACCAAATCAACCTACGTGCA 58.852 47.619 0.00 0.00 0.00 4.57
2521 3507 2.550606 GACCAAATCAACCTACGTGCAA 59.449 45.455 0.00 0.00 0.00 4.08
2522 3508 2.292292 ACCAAATCAACCTACGTGCAAC 59.708 45.455 0.00 0.00 0.00 4.17
2523 3509 2.292016 CCAAATCAACCTACGTGCAACA 59.708 45.455 0.00 0.00 35.74 3.33
2524 3510 3.057596 CCAAATCAACCTACGTGCAACAT 60.058 43.478 0.00 0.00 35.74 2.71
2525 3511 4.545610 CAAATCAACCTACGTGCAACATT 58.454 39.130 0.00 0.00 35.74 2.71
2526 3512 4.846779 AATCAACCTACGTGCAACATTT 57.153 36.364 0.00 0.00 35.74 2.32
2527 3513 3.889196 TCAACCTACGTGCAACATTTC 57.111 42.857 0.00 0.00 35.74 2.17
2528 3514 3.206964 TCAACCTACGTGCAACATTTCA 58.793 40.909 0.00 0.00 35.74 2.69
2529 3515 3.249799 TCAACCTACGTGCAACATTTCAG 59.750 43.478 0.00 0.00 35.74 3.02
2530 3516 3.120321 ACCTACGTGCAACATTTCAGA 57.880 42.857 0.00 0.00 35.74 3.27
2531 3517 3.472652 ACCTACGTGCAACATTTCAGAA 58.527 40.909 0.00 0.00 35.74 3.02
2532 3518 3.250040 ACCTACGTGCAACATTTCAGAAC 59.750 43.478 0.00 0.00 35.74 3.01
2533 3519 3.498397 CCTACGTGCAACATTTCAGAACT 59.502 43.478 0.00 0.00 35.74 3.01
2534 3520 3.609103 ACGTGCAACATTTCAGAACTC 57.391 42.857 0.00 0.00 35.74 3.01
2535 3521 2.290641 ACGTGCAACATTTCAGAACTCC 59.709 45.455 0.00 0.00 35.74 3.85
2536 3522 2.350772 CGTGCAACATTTCAGAACTCCC 60.351 50.000 0.00 0.00 35.74 4.30
2537 3523 2.622942 GTGCAACATTTCAGAACTCCCA 59.377 45.455 0.00 0.00 36.32 4.37
2538 3524 3.256631 GTGCAACATTTCAGAACTCCCAT 59.743 43.478 0.00 0.00 36.32 4.00
2539 3525 3.896888 TGCAACATTTCAGAACTCCCATT 59.103 39.130 0.00 0.00 0.00 3.16
2540 3526 4.240096 GCAACATTTCAGAACTCCCATTG 58.760 43.478 0.00 0.00 0.00 2.82
2541 3527 4.813027 CAACATTTCAGAACTCCCATTGG 58.187 43.478 0.00 0.00 0.00 3.16
2542 3528 3.434309 ACATTTCAGAACTCCCATTGGG 58.566 45.455 16.26 16.26 46.11 4.12
2556 3542 3.673902 CCATTGGGGTGTTCAATTTTCC 58.326 45.455 0.00 0.00 33.08 3.13
2557 3543 3.072184 CCATTGGGGTGTTCAATTTTCCA 59.928 43.478 0.00 0.00 33.08 3.53
2558 3544 4.445448 CCATTGGGGTGTTCAATTTTCCAA 60.445 41.667 0.00 0.00 37.24 3.53
2559 3545 3.828875 TGGGGTGTTCAATTTTCCAAC 57.171 42.857 0.00 0.00 0.00 3.77
2560 3546 3.107601 TGGGGTGTTCAATTTTCCAACA 58.892 40.909 0.00 0.00 0.00 3.33
2561 3547 3.519510 TGGGGTGTTCAATTTTCCAACAA 59.480 39.130 0.00 0.00 31.95 2.83
2562 3548 4.019321 TGGGGTGTTCAATTTTCCAACAAA 60.019 37.500 0.00 0.00 31.95 2.83
2563 3549 4.944317 GGGGTGTTCAATTTTCCAACAAAA 59.056 37.500 0.00 0.00 31.95 2.44
2564 3550 5.416013 GGGGTGTTCAATTTTCCAACAAAAA 59.584 36.000 0.00 0.00 31.95 1.94
2593 3579 8.779354 ACTACTGTATGAAGTTCCTTTGAATC 57.221 34.615 0.00 0.00 31.98 2.52
2594 3580 8.375506 ACTACTGTATGAAGTTCCTTTGAATCA 58.624 33.333 0.00 0.00 31.98 2.57
2595 3581 9.219603 CTACTGTATGAAGTTCCTTTGAATCAA 57.780 33.333 0.00 0.00 31.98 2.57
2596 3582 8.463930 ACTGTATGAAGTTCCTTTGAATCAAA 57.536 30.769 8.25 8.25 31.98 2.69
2606 3592 4.813750 CTTTGAATCAAAGGAGCCCATT 57.186 40.909 23.96 0.00 44.75 3.16
2607 3593 5.920193 CTTTGAATCAAAGGAGCCCATTA 57.080 39.130 23.96 0.00 44.75 1.90
2608 3594 5.899299 CTTTGAATCAAAGGAGCCCATTAG 58.101 41.667 23.96 0.00 44.75 1.73
2609 3595 4.860802 TGAATCAAAGGAGCCCATTAGA 57.139 40.909 0.00 0.00 0.00 2.10
2610 3596 5.191727 TGAATCAAAGGAGCCCATTAGAA 57.808 39.130 0.00 0.00 0.00 2.10
2611 3597 5.769835 TGAATCAAAGGAGCCCATTAGAAT 58.230 37.500 0.00 0.00 0.00 2.40
2612 3598 6.197168 TGAATCAAAGGAGCCCATTAGAATT 58.803 36.000 0.00 0.00 0.00 2.17
2613 3599 6.322201 TGAATCAAAGGAGCCCATTAGAATTC 59.678 38.462 0.00 0.00 0.00 2.17
2614 3600 5.456921 TCAAAGGAGCCCATTAGAATTCT 57.543 39.130 13.56 13.56 0.00 2.40
2615 3601 5.831103 TCAAAGGAGCCCATTAGAATTCTT 58.169 37.500 14.36 0.00 0.00 2.52
2616 3602 6.256053 TCAAAGGAGCCCATTAGAATTCTTT 58.744 36.000 14.36 0.00 0.00 2.52
2617 3603 6.725834 TCAAAGGAGCCCATTAGAATTCTTTT 59.274 34.615 14.36 1.04 0.00 2.27
2618 3604 6.535963 AAGGAGCCCATTAGAATTCTTTTG 57.464 37.500 14.36 11.26 0.00 2.44
2619 3605 4.403752 AGGAGCCCATTAGAATTCTTTTGC 59.596 41.667 14.36 9.70 0.00 3.68
2620 3606 4.403752 GGAGCCCATTAGAATTCTTTTGCT 59.596 41.667 14.36 14.04 0.00 3.91
2621 3607 5.105187 GGAGCCCATTAGAATTCTTTTGCTT 60.105 40.000 14.36 0.80 0.00 3.91
2622 3608 6.364568 AGCCCATTAGAATTCTTTTGCTTT 57.635 33.333 14.36 0.00 0.00 3.51
2623 3609 6.772605 AGCCCATTAGAATTCTTTTGCTTTT 58.227 32.000 14.36 0.00 0.00 2.27
2624 3610 6.875726 AGCCCATTAGAATTCTTTTGCTTTTC 59.124 34.615 14.36 0.00 0.00 2.29
2625 3611 6.875726 GCCCATTAGAATTCTTTTGCTTTTCT 59.124 34.615 14.36 0.00 0.00 2.52
2626 3612 7.388776 GCCCATTAGAATTCTTTTGCTTTTCTT 59.611 33.333 14.36 0.00 0.00 2.52
2627 3613 8.715088 CCCATTAGAATTCTTTTGCTTTTCTTG 58.285 33.333 14.36 0.00 0.00 3.02
2628 3614 9.264719 CCATTAGAATTCTTTTGCTTTTCTTGT 57.735 29.630 14.36 0.00 0.00 3.16
2630 3616 6.594284 AGAATTCTTTTGCTTTTCTTGTGC 57.406 33.333 0.88 0.00 0.00 4.57
2631 3617 6.343703 AGAATTCTTTTGCTTTTCTTGTGCT 58.656 32.000 0.88 0.00 0.00 4.40
2632 3618 7.491682 AGAATTCTTTTGCTTTTCTTGTGCTA 58.508 30.769 0.88 0.00 0.00 3.49
2633 3619 8.146412 AGAATTCTTTTGCTTTTCTTGTGCTAT 58.854 29.630 0.88 0.00 0.00 2.97
2634 3620 7.880059 ATTCTTTTGCTTTTCTTGTGCTATC 57.120 32.000 0.00 0.00 0.00 2.08
2635 3621 6.389830 TCTTTTGCTTTTCTTGTGCTATCA 57.610 33.333 0.00 0.00 0.00 2.15
2636 3622 6.804677 TCTTTTGCTTTTCTTGTGCTATCAA 58.195 32.000 0.00 0.00 0.00 2.57
2637 3623 7.264221 TCTTTTGCTTTTCTTGTGCTATCAAA 58.736 30.769 0.00 0.00 0.00 2.69
2638 3624 6.826893 TTTGCTTTTCTTGTGCTATCAAAC 57.173 33.333 0.00 0.00 0.00 2.93
2639 3625 5.512753 TGCTTTTCTTGTGCTATCAAACA 57.487 34.783 0.00 0.00 0.00 2.83
2640 3626 5.280945 TGCTTTTCTTGTGCTATCAAACAC 58.719 37.500 0.00 0.00 37.31 3.32
2641 3627 4.681483 GCTTTTCTTGTGCTATCAAACACC 59.319 41.667 0.00 0.00 35.90 4.16
2642 3628 4.846779 TTTCTTGTGCTATCAAACACCC 57.153 40.909 0.00 0.00 35.90 4.61
2643 3629 2.422597 TCTTGTGCTATCAAACACCCG 58.577 47.619 0.00 0.00 35.90 5.28
2644 3630 2.037902 TCTTGTGCTATCAAACACCCGA 59.962 45.455 0.00 0.00 35.90 5.14
2645 3631 2.552599 TGTGCTATCAAACACCCGAA 57.447 45.000 0.00 0.00 35.90 4.30
2646 3632 2.147958 TGTGCTATCAAACACCCGAAC 58.852 47.619 0.00 0.00 35.90 3.95
2647 3633 1.467342 GTGCTATCAAACACCCGAACC 59.533 52.381 0.00 0.00 0.00 3.62
2648 3634 1.092348 GCTATCAAACACCCGAACCC 58.908 55.000 0.00 0.00 0.00 4.11
2649 3635 1.339727 GCTATCAAACACCCGAACCCT 60.340 52.381 0.00 0.00 0.00 4.34
2650 3636 2.356135 CTATCAAACACCCGAACCCTG 58.644 52.381 0.00 0.00 0.00 4.45
2651 3637 0.893727 ATCAAACACCCGAACCCTGC 60.894 55.000 0.00 0.00 0.00 4.85
2652 3638 1.826054 CAAACACCCGAACCCTGCA 60.826 57.895 0.00 0.00 0.00 4.41
2653 3639 1.826487 AAACACCCGAACCCTGCAC 60.826 57.895 0.00 0.00 0.00 4.57
2654 3640 2.559922 AAACACCCGAACCCTGCACA 62.560 55.000 0.00 0.00 0.00 4.57
2655 3641 2.978010 CACCCGAACCCTGCACAC 60.978 66.667 0.00 0.00 0.00 3.82
2661 3647 1.270625 CCGAACCCTGCACACTTTCTA 60.271 52.381 0.00 0.00 0.00 2.10
2667 3653 5.499004 ACCCTGCACACTTTCTATTCTTA 57.501 39.130 0.00 0.00 0.00 2.10
2693 3679 9.264719 ACATTTTGAGAATCCTTCAAATCAAAC 57.735 29.630 1.75 0.00 36.64 2.93
2699 3685 7.503566 TGAGAATCCTTCAAATCAAACAAGACT 59.496 33.333 0.00 0.00 0.00 3.24
2703 3689 5.885352 TCCTTCAAATCAAACAAGACTCACA 59.115 36.000 0.00 0.00 0.00 3.58
2712 3698 7.857734 TCAAACAAGACTCACAAACATTCTA 57.142 32.000 0.00 0.00 0.00 2.10
2721 3707 8.196771 AGACTCACAAACATTCTAAAAATGCAA 58.803 29.630 0.00 0.00 0.00 4.08
2752 3738 7.906327 ACAAGAAAATATTAGGGTTGCAATGT 58.094 30.769 0.59 0.00 0.00 2.71
2757 3743 7.422465 AAATATTAGGGTTGCAATGTCATGT 57.578 32.000 0.59 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.242739 GCGCAAGTTATATGACCAACAGG 60.243 47.826 0.30 0.00 41.68 4.00
31 32 3.623060 AGCGCAAGTTATATGACCAACAG 59.377 43.478 11.47 0.00 41.68 3.16
98 102 7.116736 GGGCTAGCTAGAAGAGAAGTATAGAT 58.883 42.308 25.15 0.00 0.00 1.98
112 116 1.134098 GGCACAATTGGGCTAGCTAGA 60.134 52.381 30.53 3.42 45.56 2.43
121 125 2.491693 ACAGATAAACGGCACAATTGGG 59.508 45.455 10.83 6.91 0.00 4.12
147 152 7.452880 AAGAACAGCACAATTGAATTAGCTA 57.547 32.000 13.59 0.00 33.33 3.32
178 183 2.425312 TCAGCCTCATCTTCTTCGTCTC 59.575 50.000 0.00 0.00 0.00 3.36
188 193 1.380403 CGTCGTCCTCAGCCTCATCT 61.380 60.000 0.00 0.00 0.00 2.90
224 229 1.979693 AACCTCGCTCTTCTCGGCT 60.980 57.895 0.00 0.00 0.00 5.52
233 238 3.423154 CCGTTGGCAACCTCGCTC 61.423 66.667 23.68 0.00 0.00 5.03
280 285 4.722526 TCATTGTCCCTTTTCCTCTTGA 57.277 40.909 0.00 0.00 0.00 3.02
305 319 1.227943 GTTGTCTCCACCAGCAGCA 60.228 57.895 0.00 0.00 0.00 4.41
307 321 0.394192 TCAGTTGTCTCCACCAGCAG 59.606 55.000 0.00 0.00 0.00 4.24
308 322 0.836606 TTCAGTTGTCTCCACCAGCA 59.163 50.000 0.00 0.00 0.00 4.41
309 323 2.191128 ATTCAGTTGTCTCCACCAGC 57.809 50.000 0.00 0.00 0.00 4.85
310 324 4.136796 TCAAATTCAGTTGTCTCCACCAG 58.863 43.478 0.00 0.00 0.00 4.00
311 325 4.163441 TCAAATTCAGTTGTCTCCACCA 57.837 40.909 0.00 0.00 0.00 4.17
312 326 5.006386 AGATCAAATTCAGTTGTCTCCACC 58.994 41.667 0.00 0.00 0.00 4.61
313 327 5.163913 CGAGATCAAATTCAGTTGTCTCCAC 60.164 44.000 0.00 0.00 35.04 4.02
314 328 4.931601 CGAGATCAAATTCAGTTGTCTCCA 59.068 41.667 0.00 0.00 35.04 3.86
315 329 4.331168 CCGAGATCAAATTCAGTTGTCTCC 59.669 45.833 0.00 0.00 35.04 3.71
316 330 4.932200 ACCGAGATCAAATTCAGTTGTCTC 59.068 41.667 0.00 8.37 35.09 3.36
317 331 4.899502 ACCGAGATCAAATTCAGTTGTCT 58.100 39.130 0.00 0.00 0.00 3.41
341 355 3.885724 AAGACAAACCCACAAACCTTG 57.114 42.857 0.00 0.00 0.00 3.61
356 370 2.013400 TCTGAAAAGCGTGCAAAGACA 58.987 42.857 0.00 0.00 0.00 3.41
382 397 2.501223 CTTCTACGCCTCCCGCACAA 62.501 60.000 0.00 0.00 41.76 3.33
383 398 2.992689 TTCTACGCCTCCCGCACA 60.993 61.111 0.00 0.00 41.76 4.57
394 409 0.798776 CAAGGTTGCCTGCTTCTACG 59.201 55.000 0.00 0.00 32.13 3.51
404 422 2.288213 GCAGAAAACTACCAAGGTTGCC 60.288 50.000 0.00 0.00 31.24 4.52
422 444 2.800250 ACTCCCAGAAAATCCTTGCAG 58.200 47.619 0.00 0.00 0.00 4.41
574 607 4.070009 ACCAATGAAAAACGGAGTACCTC 58.930 43.478 0.00 0.00 45.00 3.85
638 689 2.286125 TGTTCTGTTCGCAACAATCGTG 60.286 45.455 3.84 0.00 41.61 4.35
650 701 1.680338 AACTGGCACCTGTTCTGTTC 58.320 50.000 6.16 0.00 33.83 3.18
675 726 0.802494 AATTCGGTCGACAATGCCAC 59.198 50.000 18.91 0.00 0.00 5.01
678 729 1.259316 GCAAATTCGGTCGACAATGC 58.741 50.000 18.91 13.21 0.00 3.56
682 733 1.673009 GGGGCAAATTCGGTCGACA 60.673 57.895 18.91 0.00 0.00 4.35
683 734 2.404186 GGGGGCAAATTCGGTCGAC 61.404 63.158 7.13 7.13 0.00 4.20
707 758 6.479990 CCCAAATTCCAACTGAACTTTTCTTC 59.520 38.462 0.00 0.00 35.31 2.87
724 775 8.458843 TCAACTCGATTTTAAGATCCCAAATTC 58.541 33.333 0.66 0.00 0.00 2.17
726 777 7.938140 TCAACTCGATTTTAAGATCCCAAAT 57.062 32.000 0.66 0.00 0.00 2.32
731 782 6.422776 TGCTTCAACTCGATTTTAAGATCC 57.577 37.500 12.17 0.00 0.00 3.36
748 799 2.694628 ACAAGCCAGTGAAAATGCTTCA 59.305 40.909 1.12 0.00 41.83 3.02
752 803 3.096489 TGAACAAGCCAGTGAAAATGC 57.904 42.857 0.00 0.00 0.00 3.56
757 808 2.098614 TGCTTTGAACAAGCCAGTGAA 58.901 42.857 4.18 0.00 42.36 3.18
761 815 2.618241 TGTACTGCTTTGAACAAGCCAG 59.382 45.455 4.18 11.82 42.36 4.85
773 827 4.080919 TGGCAGATGTTCTATGTACTGCTT 60.081 41.667 14.74 0.00 46.27 3.91
774 828 3.452264 TGGCAGATGTTCTATGTACTGCT 59.548 43.478 14.74 0.00 46.27 4.24
775 829 3.797039 TGGCAGATGTTCTATGTACTGC 58.203 45.455 0.00 0.00 46.31 4.40
776 830 5.423015 AGTTGGCAGATGTTCTATGTACTG 58.577 41.667 0.00 0.00 0.00 2.74
779 858 6.791867 ACTAGTTGGCAGATGTTCTATGTA 57.208 37.500 0.00 0.00 0.00 2.29
787 866 3.560025 CCCTCAAACTAGTTGGCAGATGT 60.560 47.826 9.34 0.00 37.85 3.06
795 874 3.425162 AAGGAGCCCTCAAACTAGTTG 57.575 47.619 9.34 3.91 38.71 3.16
799 878 2.838202 CTGGTAAGGAGCCCTCAAACTA 59.162 50.000 0.00 0.00 30.89 2.24
801 880 1.628846 TCTGGTAAGGAGCCCTCAAAC 59.371 52.381 0.00 0.00 30.89 2.93
810 889 2.100197 TCACGTCCATCTGGTAAGGAG 58.900 52.381 0.00 0.00 36.34 3.69
816 895 2.236146 TGCTATTTCACGTCCATCTGGT 59.764 45.455 0.00 0.00 36.34 4.00
820 899 1.258982 CGCTGCTATTTCACGTCCATC 59.741 52.381 0.00 0.00 0.00 3.51
821 900 1.290203 CGCTGCTATTTCACGTCCAT 58.710 50.000 0.00 0.00 0.00 3.41
848 927 4.003648 GCTGTTGTATGCCTTGTCTAGTT 58.996 43.478 0.00 0.00 0.00 2.24
849 928 3.007940 TGCTGTTGTATGCCTTGTCTAGT 59.992 43.478 0.00 0.00 0.00 2.57
850 929 3.599343 TGCTGTTGTATGCCTTGTCTAG 58.401 45.455 0.00 0.00 0.00 2.43
857 936 0.692476 TGACCTGCTGTTGTATGCCT 59.308 50.000 0.00 0.00 0.00 4.75
861 940 8.752005 AACATTATTATGACCTGCTGTTGTAT 57.248 30.769 0.00 0.00 35.65 2.29
863 942 8.574251 TTAACATTATTATGACCTGCTGTTGT 57.426 30.769 0.00 0.00 35.65 3.32
895 1113 5.382618 ACGACTACTTTTTATCCACGACT 57.617 39.130 0.00 0.00 0.00 4.18
896 1114 5.225949 CGTACGACTACTTTTTATCCACGAC 59.774 44.000 10.44 0.00 0.00 4.34
898 1116 5.323900 TCGTACGACTACTTTTTATCCACG 58.676 41.667 15.28 0.00 0.00 4.94
899 1117 7.566858 TTTCGTACGACTACTTTTTATCCAC 57.433 36.000 19.36 0.00 0.00 4.02
905 1123 9.260002 TCCTAAATTTTCGTACGACTACTTTTT 57.740 29.630 19.36 13.58 0.00 1.94
906 1124 8.816640 TCCTAAATTTTCGTACGACTACTTTT 57.183 30.769 19.36 14.85 0.00 2.27
907 1125 8.299570 TCTCCTAAATTTTCGTACGACTACTTT 58.700 33.333 19.36 16.39 0.00 2.66
909 1127 7.383102 TCTCCTAAATTTTCGTACGACTACT 57.617 36.000 19.36 4.44 0.00 2.57
911 1129 9.132521 CTTTTCTCCTAAATTTTCGTACGACTA 57.867 33.333 19.36 9.28 0.00 2.59
912 1130 7.654923 ACTTTTCTCCTAAATTTTCGTACGACT 59.345 33.333 19.36 2.67 0.00 4.18
915 1133 9.737025 CTAACTTTTCTCCTAAATTTTCGTACG 57.263 33.333 9.53 9.53 0.00 3.67
916 1134 9.539139 GCTAACTTTTCTCCTAAATTTTCGTAC 57.461 33.333 0.00 0.00 0.00 3.67
918 1136 7.172019 TCGCTAACTTTTCTCCTAAATTTTCGT 59.828 33.333 0.00 0.00 0.00 3.85
920 1138 9.278734 CATCGCTAACTTTTCTCCTAAATTTTC 57.721 33.333 0.00 0.00 0.00 2.29
921 1139 9.010029 TCATCGCTAACTTTTCTCCTAAATTTT 57.990 29.630 0.00 0.00 0.00 1.82
927 1145 5.128827 ACCATCATCGCTAACTTTTCTCCTA 59.871 40.000 0.00 0.00 0.00 2.94
942 1366 5.608676 ACTACTATCGTGTACCATCATCG 57.391 43.478 0.00 0.00 0.00 3.84
943 1367 7.670009 ACTACTACTATCGTGTACCATCATC 57.330 40.000 0.00 0.00 0.00 2.92
944 1368 7.040617 CCAACTACTACTATCGTGTACCATCAT 60.041 40.741 0.00 0.00 0.00 2.45
945 1369 6.261603 CCAACTACTACTATCGTGTACCATCA 59.738 42.308 0.00 0.00 0.00 3.07
946 1370 6.261826 ACCAACTACTACTATCGTGTACCATC 59.738 42.308 0.00 0.00 0.00 3.51
947 1371 6.125029 ACCAACTACTACTATCGTGTACCAT 58.875 40.000 0.00 0.00 0.00 3.55
948 1372 5.500234 ACCAACTACTACTATCGTGTACCA 58.500 41.667 0.00 0.00 0.00 3.25
949 1373 7.553881 TTACCAACTACTACTATCGTGTACC 57.446 40.000 0.00 0.00 0.00 3.34
950 1374 9.840427 TTTTTACCAACTACTACTATCGTGTAC 57.160 33.333 0.00 0.00 0.00 2.90
952 1376 9.578439 GATTTTTACCAACTACTACTATCGTGT 57.422 33.333 0.00 0.00 0.00 4.49
953 1377 9.798994 AGATTTTTACCAACTACTACTATCGTG 57.201 33.333 0.00 0.00 0.00 4.35
958 1382 9.933723 GTCCAAGATTTTTACCAACTACTACTA 57.066 33.333 0.00 0.00 0.00 1.82
959 1383 7.601508 CGTCCAAGATTTTTACCAACTACTACT 59.398 37.037 0.00 0.00 0.00 2.57
960 1384 7.599998 TCGTCCAAGATTTTTACCAACTACTAC 59.400 37.037 0.00 0.00 0.00 2.73
961 1385 7.669427 TCGTCCAAGATTTTTACCAACTACTA 58.331 34.615 0.00 0.00 0.00 1.82
962 1386 6.527423 TCGTCCAAGATTTTTACCAACTACT 58.473 36.000 0.00 0.00 0.00 2.57
963 1387 6.620089 GCTCGTCCAAGATTTTTACCAACTAC 60.620 42.308 0.00 0.00 0.00 2.73
964 1388 5.410439 GCTCGTCCAAGATTTTTACCAACTA 59.590 40.000 0.00 0.00 0.00 2.24
965 1389 4.215613 GCTCGTCCAAGATTTTTACCAACT 59.784 41.667 0.00 0.00 0.00 3.16
966 1390 4.473199 GCTCGTCCAAGATTTTTACCAAC 58.527 43.478 0.00 0.00 0.00 3.77
970 1394 2.475685 GCCGCTCGTCCAAGATTTTTAC 60.476 50.000 0.00 0.00 0.00 2.01
982 1547 2.363220 CATAAAATTTCGCCGCTCGTC 58.637 47.619 0.00 0.00 39.67 4.20
987 1552 1.206115 CCGCCATAAAATTTCGCCGC 61.206 55.000 0.00 0.00 0.00 6.53
991 1556 4.568152 ATTCTCCCGCCATAAAATTTCG 57.432 40.909 0.00 0.00 0.00 3.46
1073 1641 1.743252 CAAGGAGAGGCGTTGAGGC 60.743 63.158 0.00 0.00 43.28 4.70
1076 1644 0.603569 GAGACAAGGAGAGGCGTTGA 59.396 55.000 0.00 0.00 43.28 3.18
1078 1646 0.892063 GAGAGACAAGGAGAGGCGTT 59.108 55.000 0.00 0.00 0.00 4.84
1079 1647 0.039035 AGAGAGACAAGGAGAGGCGT 59.961 55.000 0.00 0.00 0.00 5.68
1081 1649 0.738389 CGAGAGAGACAAGGAGAGGC 59.262 60.000 0.00 0.00 0.00 4.70
1122 1729 2.202623 ATTGCGACGACGGAGAGC 60.203 61.111 9.67 0.00 41.35 4.09
1124 1731 2.180769 CCATTGCGACGACGGAGA 59.819 61.111 9.67 0.00 41.35 3.71
1125 1732 3.554692 GCCATTGCGACGACGGAG 61.555 66.667 9.67 0.00 41.35 4.63
1182 1789 1.444933 TCTTGGTGATCTTGTGGGGT 58.555 50.000 0.00 0.00 0.00 4.95
1298 1905 0.737367 ATGTGACGATGGAGCACGTG 60.737 55.000 12.28 12.28 42.74 4.49
1299 1906 0.815095 TATGTGACGATGGAGCACGT 59.185 50.000 0.00 0.00 45.32 4.49
1301 1908 2.032549 GCATTATGTGACGATGGAGCAC 60.033 50.000 0.00 0.00 0.00 4.40
1302 1909 2.212652 GCATTATGTGACGATGGAGCA 58.787 47.619 0.00 0.00 0.00 4.26
1310 1917 1.064505 CAGGCAAGGCATTATGTGACG 59.935 52.381 0.00 0.00 42.34 4.35
1312 1919 1.105457 GCAGGCAAGGCATTATGTGA 58.895 50.000 0.00 0.00 0.00 3.58
1315 1922 1.108776 ACAGCAGGCAAGGCATTATG 58.891 50.000 0.00 0.00 0.00 1.90
1316 1923 1.856629 AACAGCAGGCAAGGCATTAT 58.143 45.000 0.00 0.00 0.00 1.28
1317 1924 1.545582 GAAACAGCAGGCAAGGCATTA 59.454 47.619 0.00 0.00 0.00 1.90
1319 1926 1.538687 GGAAACAGCAGGCAAGGCAT 61.539 55.000 0.00 0.00 0.00 4.40
1321 1928 2.653115 GGAAACAGCAGGCAAGGC 59.347 61.111 0.00 0.00 0.00 4.35
1322 1929 0.829182 AAGGGAAACAGCAGGCAAGG 60.829 55.000 0.00 0.00 0.00 3.61
1324 1931 1.138661 CAAAAGGGAAACAGCAGGCAA 59.861 47.619 0.00 0.00 0.00 4.52
1325 1932 0.752054 CAAAAGGGAAACAGCAGGCA 59.248 50.000 0.00 0.00 0.00 4.75
1326 1933 0.601046 GCAAAAGGGAAACAGCAGGC 60.601 55.000 0.00 0.00 0.00 4.85
1327 1934 0.033920 GGCAAAAGGGAAACAGCAGG 59.966 55.000 0.00 0.00 0.00 4.85
1329 1936 0.398381 AGGGCAAAAGGGAAACAGCA 60.398 50.000 0.00 0.00 0.00 4.41
1331 1938 1.341209 GTCAGGGCAAAAGGGAAACAG 59.659 52.381 0.00 0.00 0.00 3.16
1332 1939 1.063266 AGTCAGGGCAAAAGGGAAACA 60.063 47.619 0.00 0.00 0.00 2.83
1333 1940 1.341209 CAGTCAGGGCAAAAGGGAAAC 59.659 52.381 0.00 0.00 0.00 2.78
1344 1963 0.390998 GACAGAGAAGCAGTCAGGGC 60.391 60.000 0.00 0.00 33.60 5.19
1354 1979 0.172352 GCTGAGACCGGACAGAGAAG 59.828 60.000 23.65 8.80 36.38 2.85
1366 1991 3.749064 TCTCCACCGCGCTGAGAC 61.749 66.667 5.61 0.00 30.48 3.36
1531 2164 3.141522 AACACGAACGAGGCGGTGA 62.142 57.895 0.14 0.00 0.00 4.02
1538 2171 1.657538 GCTGCAAAGAACACGAACGAG 60.658 52.381 0.14 0.00 0.00 4.18
1547 2180 2.174349 CTCGGCGCTGCAAAGAAC 59.826 61.111 12.58 0.00 0.00 3.01
1634 2267 2.022129 GAAGAGCACGACACCCACG 61.022 63.158 0.00 0.00 0.00 4.94
1640 2273 2.143122 GAATGGTTGAAGAGCACGACA 58.857 47.619 0.00 0.00 38.83 4.35
1658 2291 1.072505 GGCAAAGTCCACCTCCGAA 59.927 57.895 0.00 0.00 0.00 4.30
1697 2330 1.289800 CCTGGATGATCATCTGCGCG 61.290 60.000 29.85 15.82 37.92 6.86
1710 2343 0.104304 GGCGTCGTAATCACCTGGAT 59.896 55.000 0.00 0.00 38.05 3.41
1721 2354 2.713770 GCGATCTCTGGCGTCGTA 59.286 61.111 0.00 0.00 37.66 3.43
1722 2355 4.194720 GGCGATCTCTGGCGTCGT 62.195 66.667 0.00 0.00 37.66 4.34
1730 2363 1.826054 CTCCACCTCGGCGATCTCT 60.826 63.158 11.27 0.00 33.14 3.10
1734 2367 3.148279 GTCCTCCACCTCGGCGAT 61.148 66.667 11.27 0.00 33.14 4.58
1769 2402 2.534272 CCAAACCCTCCCTCCCCA 60.534 66.667 0.00 0.00 0.00 4.96
1784 2417 4.939368 CAAACGCCGGTGGACCCA 62.939 66.667 21.14 0.00 0.00 4.51
1799 2432 0.902984 TACCAGGGCTCGAAGCTCAA 60.903 55.000 9.01 0.00 46.44 3.02
1806 2439 2.645297 AGATCTATCTACCAGGGCTCGA 59.355 50.000 0.00 0.00 34.85 4.04
1886 2525 6.041511 CACAAATGACACAACCATCAAAAGA 58.958 36.000 0.00 0.00 0.00 2.52
1904 2544 1.327303 AACATCGGCCACACACAAAT 58.673 45.000 2.24 0.00 0.00 2.32
1905 2545 1.968704 TAACATCGGCCACACACAAA 58.031 45.000 2.24 0.00 0.00 2.83
1907 2547 1.968704 TTTAACATCGGCCACACACA 58.031 45.000 2.24 0.00 0.00 3.72
1908 2548 2.486203 TCATTTAACATCGGCCACACAC 59.514 45.455 2.24 0.00 0.00 3.82
1909 2549 2.784347 TCATTTAACATCGGCCACACA 58.216 42.857 2.24 0.00 0.00 3.72
1910 2550 3.840890 TTCATTTAACATCGGCCACAC 57.159 42.857 2.24 0.00 0.00 3.82
1911 2551 4.704540 AGATTTCATTTAACATCGGCCACA 59.295 37.500 2.24 0.00 0.00 4.17
1912 2552 5.248870 AGATTTCATTTAACATCGGCCAC 57.751 39.130 2.24 0.00 0.00 5.01
1913 2553 4.035091 CGAGATTTCATTTAACATCGGCCA 59.965 41.667 2.24 0.00 0.00 5.36
1914 2554 4.035208 ACGAGATTTCATTTAACATCGGCC 59.965 41.667 0.00 0.00 33.46 6.13
1915 2555 4.963953 CACGAGATTTCATTTAACATCGGC 59.036 41.667 0.00 0.00 33.46 5.54
1929 2569 3.431486 GGCTGGAAGAGATCACGAGATTT 60.431 47.826 0.00 0.00 34.07 2.17
1950 2590 5.645067 TGCAACATGAACTTCTCTAATCTGG 59.355 40.000 0.00 0.00 0.00 3.86
1970 2616 5.012354 TCAGATGCTGGAGTCATATATGCAA 59.988 40.000 7.92 0.00 32.66 4.08
1975 2621 5.244851 GGAGTTCAGATGCTGGAGTCATATA 59.755 44.000 11.55 0.00 40.29 0.86
1978 2624 2.170187 GGAGTTCAGATGCTGGAGTCAT 59.830 50.000 11.55 0.00 40.29 3.06
1979 2625 1.552337 GGAGTTCAGATGCTGGAGTCA 59.448 52.381 11.55 0.00 40.29 3.41
1980 2626 1.552337 TGGAGTTCAGATGCTGGAGTC 59.448 52.381 2.54 2.54 38.39 3.36
1981 2627 1.554160 CTGGAGTTCAGATGCTGGAGT 59.446 52.381 0.00 0.00 46.18 3.85
1982 2628 1.743091 GCTGGAGTTCAGATGCTGGAG 60.743 57.143 1.33 0.00 46.18 3.86
1983 2629 0.251354 GCTGGAGTTCAGATGCTGGA 59.749 55.000 1.33 0.00 46.18 3.86
1984 2630 0.035725 TGCTGGAGTTCAGATGCTGG 60.036 55.000 1.33 0.00 46.18 4.85
1986 2632 1.273759 TCTGCTGGAGTTCAGATGCT 58.726 50.000 1.33 0.00 46.18 3.79
1987 2633 2.105006 TTCTGCTGGAGTTCAGATGC 57.895 50.000 1.33 0.00 46.18 3.91
1988 2634 5.182570 TCAAAATTCTGCTGGAGTTCAGATG 59.817 40.000 1.33 0.00 46.18 2.90
1989 2635 5.319453 TCAAAATTCTGCTGGAGTTCAGAT 58.681 37.500 1.33 0.00 46.18 2.90
1990 2636 4.717877 TCAAAATTCTGCTGGAGTTCAGA 58.282 39.130 1.33 0.00 46.18 3.27
1991 2637 4.518211 ACTCAAAATTCTGCTGGAGTTCAG 59.482 41.667 0.00 0.00 46.03 3.02
1992 2638 4.464008 ACTCAAAATTCTGCTGGAGTTCA 58.536 39.130 0.00 0.00 32.04 3.18
1994 2640 4.464008 TGACTCAAAATTCTGCTGGAGTT 58.536 39.130 0.00 0.00 35.88 3.01
1995 2641 4.070716 CTGACTCAAAATTCTGCTGGAGT 58.929 43.478 0.00 0.00 38.24 3.85
1996 2642 4.070716 ACTGACTCAAAATTCTGCTGGAG 58.929 43.478 0.00 0.00 0.00 3.86
1998 2644 4.037208 ACAACTGACTCAAAATTCTGCTGG 59.963 41.667 0.00 0.00 0.00 4.85
1999 2645 4.974275 CACAACTGACTCAAAATTCTGCTG 59.026 41.667 0.00 0.00 0.00 4.41
2000 2646 4.641989 ACACAACTGACTCAAAATTCTGCT 59.358 37.500 0.00 0.00 0.00 4.24
2001 2647 4.925068 ACACAACTGACTCAAAATTCTGC 58.075 39.130 0.00 0.00 0.00 4.26
2002 2648 5.200454 CGACACAACTGACTCAAAATTCTG 58.800 41.667 0.00 0.00 0.00 3.02
2003 2649 4.876107 ACGACACAACTGACTCAAAATTCT 59.124 37.500 0.00 0.00 0.00 2.40
2005 2651 4.394920 ACACGACACAACTGACTCAAAATT 59.605 37.500 0.00 0.00 0.00 1.82
2006 2652 3.938963 ACACGACACAACTGACTCAAAAT 59.061 39.130 0.00 0.00 0.00 1.82
2007 2653 3.124466 CACACGACACAACTGACTCAAAA 59.876 43.478 0.00 0.00 0.00 2.44
2009 2655 2.267426 CACACGACACAACTGACTCAA 58.733 47.619 0.00 0.00 0.00 3.02
2015 2661 2.286563 TGCAATACACACGACACAACTG 59.713 45.455 0.00 0.00 0.00 3.16
2016 2662 2.543848 CTGCAATACACACGACACAACT 59.456 45.455 0.00 0.00 0.00 3.16
2017 2663 2.542178 TCTGCAATACACACGACACAAC 59.458 45.455 0.00 0.00 0.00 3.32
2018 2664 2.542178 GTCTGCAATACACACGACACAA 59.458 45.455 0.00 0.00 0.00 3.33
2041 2689 8.571336 AGTTTTTCTAACATTCCACATTCAGAG 58.429 33.333 0.00 0.00 0.00 3.35
2045 2693 7.657336 TGGAGTTTTTCTAACATTCCACATTC 58.343 34.615 0.00 0.00 0.00 2.67
2048 2696 6.208599 GGATGGAGTTTTTCTAACATTCCACA 59.791 38.462 0.00 0.00 36.20 4.17
2059 2707 4.170468 AGTGTGTGGATGGAGTTTTTCT 57.830 40.909 0.00 0.00 0.00 2.52
2278 2929 2.297315 TCCCATCGCTACTGCTCATTAG 59.703 50.000 0.00 0.00 36.97 1.73
2289 2940 2.803133 CGAAGCTGAAATCCCATCGCTA 60.803 50.000 0.00 0.00 0.00 4.26
2389 3375 6.951198 TCAGAAAGCCAGGGATTACATTAAAA 59.049 34.615 0.00 0.00 0.00 1.52
2451 3437 2.062519 GCTCGCTCTCCGGATTTTATC 58.937 52.381 3.57 0.00 37.59 1.75
2492 3478 5.221165 CGTAGGTTGATTTGGTCCAGTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
2493 3479 4.277423 CGTAGGTTGATTTGGTCCAGTTTT 59.723 41.667 0.00 0.00 0.00 2.43
2494 3480 3.818773 CGTAGGTTGATTTGGTCCAGTTT 59.181 43.478 0.00 0.00 0.00 2.66
2495 3481 3.181448 ACGTAGGTTGATTTGGTCCAGTT 60.181 43.478 0.00 0.00 0.00 3.16
2496 3482 2.370849 ACGTAGGTTGATTTGGTCCAGT 59.629 45.455 0.00 0.00 0.00 4.00
2497 3483 2.742053 CACGTAGGTTGATTTGGTCCAG 59.258 50.000 0.00 0.00 0.00 3.86
2498 3484 2.773487 CACGTAGGTTGATTTGGTCCA 58.227 47.619 0.00 0.00 0.00 4.02
2499 3485 1.467342 GCACGTAGGTTGATTTGGTCC 59.533 52.381 0.00 0.00 0.00 4.46
2500 3486 2.147958 TGCACGTAGGTTGATTTGGTC 58.852 47.619 0.00 0.00 0.00 4.02
2501 3487 2.264005 TGCACGTAGGTTGATTTGGT 57.736 45.000 0.00 0.00 0.00 3.67
2502 3488 2.292016 TGTTGCACGTAGGTTGATTTGG 59.708 45.455 0.00 0.00 0.00 3.28
2503 3489 3.617540 TGTTGCACGTAGGTTGATTTG 57.382 42.857 0.00 0.00 0.00 2.32
2504 3490 4.846779 AATGTTGCACGTAGGTTGATTT 57.153 36.364 0.00 0.00 0.00 2.17
2505 3491 4.277174 TGAAATGTTGCACGTAGGTTGATT 59.723 37.500 0.00 0.00 0.00 2.57
2506 3492 3.818210 TGAAATGTTGCACGTAGGTTGAT 59.182 39.130 0.00 0.00 0.00 2.57
2507 3493 3.206964 TGAAATGTTGCACGTAGGTTGA 58.793 40.909 0.00 0.00 0.00 3.18
2508 3494 3.249799 TCTGAAATGTTGCACGTAGGTTG 59.750 43.478 0.00 0.00 0.00 3.77
2509 3495 3.472652 TCTGAAATGTTGCACGTAGGTT 58.527 40.909 0.00 0.00 0.00 3.50
2510 3496 3.120321 TCTGAAATGTTGCACGTAGGT 57.880 42.857 0.00 0.00 0.00 3.08
2511 3497 3.498397 AGTTCTGAAATGTTGCACGTAGG 59.502 43.478 0.00 0.00 0.00 3.18
2512 3498 4.377431 GGAGTTCTGAAATGTTGCACGTAG 60.377 45.833 0.00 0.00 0.00 3.51
2513 3499 3.496884 GGAGTTCTGAAATGTTGCACGTA 59.503 43.478 0.00 0.00 0.00 3.57
2514 3500 2.290641 GGAGTTCTGAAATGTTGCACGT 59.709 45.455 0.00 0.00 0.00 4.49
2515 3501 2.350772 GGGAGTTCTGAAATGTTGCACG 60.351 50.000 0.00 0.00 0.00 5.34
2516 3502 2.622942 TGGGAGTTCTGAAATGTTGCAC 59.377 45.455 0.00 0.00 0.00 4.57
2517 3503 2.942804 TGGGAGTTCTGAAATGTTGCA 58.057 42.857 0.00 0.00 0.00 4.08
2518 3504 4.240096 CAATGGGAGTTCTGAAATGTTGC 58.760 43.478 0.00 0.00 0.00 4.17
2519 3505 4.813027 CCAATGGGAGTTCTGAAATGTTG 58.187 43.478 0.00 0.00 35.59 3.33
2535 3521 3.072184 TGGAAAATTGAACACCCCAATGG 59.928 43.478 0.00 0.00 34.75 3.16
2536 3522 4.348863 TGGAAAATTGAACACCCCAATG 57.651 40.909 0.00 0.00 34.75 2.82
2537 3523 4.164988 TGTTGGAAAATTGAACACCCCAAT 59.835 37.500 0.00 0.00 35.09 3.16
2538 3524 3.519510 TGTTGGAAAATTGAACACCCCAA 59.480 39.130 0.00 0.00 0.00 4.12
2539 3525 3.107601 TGTTGGAAAATTGAACACCCCA 58.892 40.909 0.00 0.00 0.00 4.96
2540 3526 3.828875 TGTTGGAAAATTGAACACCCC 57.171 42.857 0.00 0.00 0.00 4.95
2541 3527 6.502136 TTTTTGTTGGAAAATTGAACACCC 57.498 33.333 0.00 0.00 29.44 4.61
2586 3572 5.579047 TCTAATGGGCTCCTTTGATTCAAA 58.421 37.500 11.19 11.19 0.00 2.69
2587 3573 5.191727 TCTAATGGGCTCCTTTGATTCAA 57.808 39.130 0.00 0.00 0.00 2.69
2588 3574 4.860802 TCTAATGGGCTCCTTTGATTCA 57.139 40.909 3.55 0.00 0.00 2.57
2589 3575 6.548993 AGAATTCTAATGGGCTCCTTTGATTC 59.451 38.462 6.06 8.57 0.00 2.52
2590 3576 6.438620 AGAATTCTAATGGGCTCCTTTGATT 58.561 36.000 6.06 0.00 0.00 2.57
2591 3577 6.023334 AGAATTCTAATGGGCTCCTTTGAT 57.977 37.500 6.06 0.00 0.00 2.57
2592 3578 5.456921 AGAATTCTAATGGGCTCCTTTGA 57.543 39.130 6.06 0.00 0.00 2.69
2593 3579 6.535963 AAAGAATTCTAATGGGCTCCTTTG 57.464 37.500 8.75 0.00 0.00 2.77
2594 3580 6.575056 GCAAAAGAATTCTAATGGGCTCCTTT 60.575 38.462 8.75 0.00 0.00 3.11
2595 3581 5.105187 GCAAAAGAATTCTAATGGGCTCCTT 60.105 40.000 8.75 0.00 0.00 3.36
2596 3582 4.403752 GCAAAAGAATTCTAATGGGCTCCT 59.596 41.667 8.75 0.00 0.00 3.69
2597 3583 4.403752 AGCAAAAGAATTCTAATGGGCTCC 59.596 41.667 8.75 0.00 0.00 4.70
2598 3584 5.588958 AGCAAAAGAATTCTAATGGGCTC 57.411 39.130 8.75 0.00 0.00 4.70
2599 3585 6.364568 AAAGCAAAAGAATTCTAATGGGCT 57.635 33.333 8.75 10.69 0.00 5.19
2600 3586 6.875726 AGAAAAGCAAAAGAATTCTAATGGGC 59.124 34.615 8.75 8.64 0.00 5.36
2601 3587 8.715088 CAAGAAAAGCAAAAGAATTCTAATGGG 58.285 33.333 8.75 0.00 30.56 4.00
2602 3588 9.264719 ACAAGAAAAGCAAAAGAATTCTAATGG 57.735 29.630 8.75 0.00 30.56 3.16
2604 3590 8.768019 GCACAAGAAAAGCAAAAGAATTCTAAT 58.232 29.630 8.75 0.00 30.56 1.73
2605 3591 7.981225 AGCACAAGAAAAGCAAAAGAATTCTAA 59.019 29.630 8.75 0.00 30.56 2.10
2606 3592 7.491682 AGCACAAGAAAAGCAAAAGAATTCTA 58.508 30.769 8.75 0.00 30.56 2.10
2607 3593 6.343703 AGCACAAGAAAAGCAAAAGAATTCT 58.656 32.000 0.88 0.88 31.98 2.40
2608 3594 6.594284 AGCACAAGAAAAGCAAAAGAATTC 57.406 33.333 0.00 0.00 0.00 2.17
2609 3595 7.927629 TGATAGCACAAGAAAAGCAAAAGAATT 59.072 29.630 0.00 0.00 0.00 2.17
2610 3596 7.436118 TGATAGCACAAGAAAAGCAAAAGAAT 58.564 30.769 0.00 0.00 0.00 2.40
2611 3597 6.804677 TGATAGCACAAGAAAAGCAAAAGAA 58.195 32.000 0.00 0.00 0.00 2.52
2612 3598 6.389830 TGATAGCACAAGAAAAGCAAAAGA 57.610 33.333 0.00 0.00 0.00 2.52
2613 3599 7.010367 TGTTTGATAGCACAAGAAAAGCAAAAG 59.990 33.333 0.00 0.00 0.00 2.27
2614 3600 6.815641 TGTTTGATAGCACAAGAAAAGCAAAA 59.184 30.769 0.00 0.00 0.00 2.44
2615 3601 6.255453 GTGTTTGATAGCACAAGAAAAGCAAA 59.745 34.615 0.00 0.00 35.81 3.68
2616 3602 5.748152 GTGTTTGATAGCACAAGAAAAGCAA 59.252 36.000 0.00 0.00 35.81 3.91
2617 3603 5.280945 GTGTTTGATAGCACAAGAAAAGCA 58.719 37.500 0.00 0.00 35.81 3.91
2618 3604 4.681483 GGTGTTTGATAGCACAAGAAAAGC 59.319 41.667 0.00 0.00 37.35 3.51
2619 3605 5.222631 GGGTGTTTGATAGCACAAGAAAAG 58.777 41.667 0.00 0.00 37.35 2.27
2620 3606 4.261405 CGGGTGTTTGATAGCACAAGAAAA 60.261 41.667 0.00 0.00 37.35 2.29
2621 3607 3.252215 CGGGTGTTTGATAGCACAAGAAA 59.748 43.478 0.00 0.00 37.35 2.52
2622 3608 2.811431 CGGGTGTTTGATAGCACAAGAA 59.189 45.455 0.00 0.00 37.35 2.52
2623 3609 2.037902 TCGGGTGTTTGATAGCACAAGA 59.962 45.455 0.00 0.00 37.35 3.02
2624 3610 2.422597 TCGGGTGTTTGATAGCACAAG 58.577 47.619 0.00 0.00 37.35 3.16
2625 3611 2.550606 GTTCGGGTGTTTGATAGCACAA 59.449 45.455 0.00 0.00 37.35 3.33
2626 3612 2.147958 GTTCGGGTGTTTGATAGCACA 58.852 47.619 0.00 0.00 37.35 4.57
2627 3613 1.467342 GGTTCGGGTGTTTGATAGCAC 59.533 52.381 0.00 0.00 35.07 4.40
2628 3614 1.612199 GGGTTCGGGTGTTTGATAGCA 60.612 52.381 0.00 0.00 0.00 3.49
2629 3615 1.092348 GGGTTCGGGTGTTTGATAGC 58.908 55.000 0.00 0.00 0.00 2.97
2630 3616 2.356135 CAGGGTTCGGGTGTTTGATAG 58.644 52.381 0.00 0.00 0.00 2.08
2631 3617 1.612199 GCAGGGTTCGGGTGTTTGATA 60.612 52.381 0.00 0.00 0.00 2.15
2632 3618 0.893727 GCAGGGTTCGGGTGTTTGAT 60.894 55.000 0.00 0.00 0.00 2.57
2633 3619 1.527380 GCAGGGTTCGGGTGTTTGA 60.527 57.895 0.00 0.00 0.00 2.69
2634 3620 1.826054 TGCAGGGTTCGGGTGTTTG 60.826 57.895 0.00 0.00 0.00 2.93
2635 3621 1.826487 GTGCAGGGTTCGGGTGTTT 60.826 57.895 0.00 0.00 0.00 2.83
2636 3622 2.203294 GTGCAGGGTTCGGGTGTT 60.203 61.111 0.00 0.00 0.00 3.32
2637 3623 3.484806 TGTGCAGGGTTCGGGTGT 61.485 61.111 0.00 0.00 0.00 4.16
2638 3624 2.958578 AAGTGTGCAGGGTTCGGGTG 62.959 60.000 0.00 0.00 0.00 4.61
2639 3625 2.279037 AAAGTGTGCAGGGTTCGGGT 62.279 55.000 0.00 0.00 0.00 5.28
2640 3626 1.515521 GAAAGTGTGCAGGGTTCGGG 61.516 60.000 0.00 0.00 0.00 5.14
2641 3627 0.535102 AGAAAGTGTGCAGGGTTCGG 60.535 55.000 0.00 0.00 0.00 4.30
2642 3628 2.163818 TAGAAAGTGTGCAGGGTTCG 57.836 50.000 0.00 0.00 0.00 3.95
2643 3629 4.327680 AGAATAGAAAGTGTGCAGGGTTC 58.672 43.478 0.00 0.00 0.00 3.62
2644 3630 4.373156 AGAATAGAAAGTGTGCAGGGTT 57.627 40.909 0.00 0.00 0.00 4.11
2645 3631 4.373156 AAGAATAGAAAGTGTGCAGGGT 57.627 40.909 0.00 0.00 0.00 4.34
2646 3632 5.245531 TGTAAGAATAGAAAGTGTGCAGGG 58.754 41.667 0.00 0.00 0.00 4.45
2647 3633 6.992063 ATGTAAGAATAGAAAGTGTGCAGG 57.008 37.500 0.00 0.00 0.00 4.85
2648 3634 9.121517 CAAAATGTAAGAATAGAAAGTGTGCAG 57.878 33.333 0.00 0.00 0.00 4.41
2649 3635 8.845227 TCAAAATGTAAGAATAGAAAGTGTGCA 58.155 29.630 0.00 0.00 0.00 4.57
2650 3636 9.334693 CTCAAAATGTAAGAATAGAAAGTGTGC 57.665 33.333 0.00 0.00 0.00 4.57
2667 3653 9.264719 GTTTGATTTGAAGGATTCTCAAAATGT 57.735 29.630 5.49 0.00 43.60 2.71
2685 3671 8.253113 AGAATGTTTGTGAGTCTTGTTTGATTT 58.747 29.630 0.00 0.00 0.00 2.17
2693 3679 8.482429 GCATTTTTAGAATGTTTGTGAGTCTTG 58.518 33.333 0.00 0.00 0.00 3.02
2699 3685 8.939201 TTCTTGCATTTTTAGAATGTTTGTGA 57.061 26.923 0.00 0.00 0.00 3.58
2726 3712 9.030452 ACATTGCAACCCTAATATTTTCTTGTA 57.970 29.630 0.00 0.00 0.00 2.41
2731 3717 7.981225 ACATGACATTGCAACCCTAATATTTTC 59.019 33.333 0.00 0.00 0.00 2.29
2734 3720 6.040842 GGACATGACATTGCAACCCTAATATT 59.959 38.462 0.00 0.00 0.00 1.28
2735 3721 5.536161 GGACATGACATTGCAACCCTAATAT 59.464 40.000 0.00 0.00 0.00 1.28
2737 3723 3.701040 GGACATGACATTGCAACCCTAAT 59.299 43.478 0.00 0.00 0.00 1.73
2738 3724 3.088532 GGACATGACATTGCAACCCTAA 58.911 45.455 0.00 0.00 0.00 2.69
2740 3726 1.203038 TGGACATGACATTGCAACCCT 60.203 47.619 0.00 0.00 0.00 4.34
2741 3727 1.255882 TGGACATGACATTGCAACCC 58.744 50.000 0.00 0.00 0.00 4.11
2752 3738 8.827832 AATTCTTAGAATTCCAATGGACATGA 57.172 30.769 13.82 0.00 0.00 3.07
2757 3743 8.434589 ACCAAAATTCTTAGAATTCCAATGGA 57.565 30.769 28.22 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.