Multiple sequence alignment - TraesCS4A01G291900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G291900 chr4A 100.000 6985 0 0 1 6985 594712422 594705438 0.000000e+00 12899.0
1 TraesCS4A01G291900 chr4A 99.185 6134 24 5 1 6131 594736677 594742787 0.000000e+00 11027.0
2 TraesCS4A01G291900 chr4A 95.216 1965 67 10 2905 4854 594732080 594734032 0.000000e+00 3083.0
3 TraesCS4A01G291900 chr4A 91.506 1036 69 11 1581 2613 594731062 594732081 0.000000e+00 1408.0
4 TraesCS4A01G291900 chr4A 89.314 1020 70 14 1607 2613 563511581 563510588 0.000000e+00 1243.0
5 TraesCS4A01G291900 chr4A 87.091 1069 83 26 4887 5936 563507066 563506034 0.000000e+00 1158.0
6 TraesCS4A01G291900 chr4A 87.774 867 67 19 4015 4854 563508002 563507148 0.000000e+00 977.0
7 TraesCS4A01G291900 chr4A 87.515 849 73 19 727 1564 594730251 594731077 0.000000e+00 950.0
8 TraesCS4A01G291900 chr4A 92.558 645 37 7 3321 3961 563510429 563509792 0.000000e+00 915.0
9 TraesCS4A01G291900 chr4A 87.296 795 63 24 781 1568 563512659 563511896 0.000000e+00 874.0
10 TraesCS4A01G291900 chr4A 83.559 961 89 31 612 1560 563228763 563227860 0.000000e+00 835.0
11 TraesCS4A01G291900 chr4A 87.423 485 37 13 5352 5836 563224468 563224008 2.870000e-148 536.0
12 TraesCS4A01G291900 chr4A 88.350 412 30 8 4450 4854 563225939 563225539 4.900000e-131 479.0
13 TraesCS4A01G291900 chr4A 80.282 426 46 20 4054 4449 459671527 459671110 3.190000e-73 287.0
14 TraesCS4A01G291900 chr4A 92.453 159 10 1 5834 5990 563214072 563213914 7.050000e-55 226.0
15 TraesCS4A01G291900 chr4A 92.994 157 6 2 2908 3060 563510586 563510431 2.540000e-54 224.0
16 TraesCS4A01G291900 chr4A 89.726 146 9 2 1585 1726 563227871 563227728 1.550000e-41 182.0
17 TraesCS4A01G291900 chr4A 90.370 135 12 1 1860 1994 601158902 601158769 7.200000e-40 176.0
18 TraesCS4A01G291900 chr4A 83.562 146 21 3 5733 5876 595055500 595055644 4.400000e-27 134.0
19 TraesCS4A01G291900 chr4A 93.333 60 2 2 5932 5990 563504176 563504118 3.470000e-13 87.9
20 TraesCS4A01G291900 chr4D 90.223 1790 113 29 3100 4854 8626010 8624248 0.000000e+00 2279.0
21 TraesCS4A01G291900 chr4D 93.209 1237 66 8 338 1570 8628412 8627190 0.000000e+00 1803.0
22 TraesCS4A01G291900 chr4D 91.325 1049 72 10 1577 2613 8627209 8626168 0.000000e+00 1415.0
23 TraesCS4A01G291900 chr4D 85.998 1107 55 43 4905 5990 8623851 8622824 0.000000e+00 1094.0
24 TraesCS4A01G291900 chr4D 88.181 863 49 21 5263 6113 8593811 8592990 0.000000e+00 979.0
25 TraesCS4A01G291900 chr4D 87.197 867 81 18 2914 3772 8596568 8595724 0.000000e+00 959.0
26 TraesCS4A01G291900 chr4D 84.726 838 74 23 727 1560 8598743 8597956 0.000000e+00 789.0
27 TraesCS4A01G291900 chr4D 95.322 342 16 0 4 345 8629063 8628722 1.710000e-150 544.0
28 TraesCS4A01G291900 chr4D 89.552 402 31 7 4456 4854 8595245 8594852 3.760000e-137 499.0
29 TraesCS4A01G291900 chr4D 95.286 297 12 2 2611 2906 22687625 22687330 2.950000e-128 470.0
30 TraesCS4A01G291900 chr4D 85.870 276 25 3 2293 2568 8596841 8596580 1.480000e-71 281.0
31 TraesCS4A01G291900 chr4D 97.561 164 4 0 2908 3071 8626166 8626003 1.480000e-71 281.0
32 TraesCS4A01G291900 chr4D 94.771 153 7 1 1585 1736 8597967 8597815 3.260000e-58 237.0
33 TraesCS4A01G291900 chr4D 89.928 139 8 3 3907 4044 8595409 8595276 2.590000e-39 174.0
34 TraesCS4A01G291900 chr4D 97.917 96 2 0 250 345 8628610 8628515 4.330000e-37 167.0
35 TraesCS4A01G291900 chr4D 83.562 146 21 3 5733 5876 8412031 8412175 4.400000e-27 134.0
36 TraesCS4A01G291900 chr4D 84.848 99 1 7 1991 2075 8597645 8597547 3.470000e-13 87.9
37 TraesCS4A01G291900 chr4B 93.774 1060 45 13 2908 3956 15924972 15923923 0.000000e+00 1572.0
38 TraesCS4A01G291900 chr4B 89.478 1226 92 22 338 1560 15927091 15925900 0.000000e+00 1515.0
39 TraesCS4A01G291900 chr4B 85.445 1381 93 46 3947 5271 15923748 15922420 0.000000e+00 1338.0
40 TraesCS4A01G291900 chr4B 87.006 708 55 19 5431 6131 15922385 15921708 0.000000e+00 763.0
41 TraesCS4A01G291900 chr4B 88.433 536 39 10 1585 2100 15925911 15925379 5.950000e-175 625.0
42 TraesCS4A01G291900 chr4B 93.931 346 17 2 3 345 15927747 15927403 2.890000e-143 520.0
43 TraesCS4A01G291900 chr4B 91.803 305 22 2 2154 2458 15925377 15925076 8.380000e-114 422.0
44 TraesCS4A01G291900 chr4B 80.535 411 62 11 4054 4449 666413683 666414090 4.100000e-77 300.0
45 TraesCS4A01G291900 chr4B 86.585 82 10 1 148 228 64104523 64104604 9.650000e-14 89.8
46 TraesCS4A01G291900 chr4B 84.615 78 12 0 496 573 538903495 538903418 2.090000e-10 78.7
47 TraesCS4A01G291900 chr4B 79.070 129 16 5 494 611 630367557 630367429 2.090000e-10 78.7
48 TraesCS4A01G291900 chr4B 100.000 30 0 0 5372 5401 15922420 15922391 1.000000e-03 56.5
49 TraesCS4A01G291900 chr4B 100.000 29 0 0 496 524 162661074 162661046 4.000000e-03 54.7
50 TraesCS4A01G291900 chr4B 90.000 40 4 0 497 536 330639566 330639527 1.300000e-02 52.8
51 TraesCS4A01G291900 chrUn 85.998 1107 55 43 4905 5990 269815039 269814012 0.000000e+00 1094.0
52 TraesCS4A01G291900 chrUn 100.000 28 0 0 497 524 12153826 12153799 1.300000e-02 52.8
53 TraesCS4A01G291900 chrUn 100.000 28 0 0 497 524 285689976 285689949 1.300000e-02 52.8
54 TraesCS4A01G291900 chr2A 89.327 862 62 14 6128 6985 120721453 120720618 0.000000e+00 1055.0
55 TraesCS4A01G291900 chr2A 88.488 860 75 13 6128 6985 120737156 120736319 0.000000e+00 1018.0
56 TraesCS4A01G291900 chr2A 87.383 856 83 17 6135 6980 694780340 694779500 0.000000e+00 959.0
57 TraesCS4A01G291900 chr2A 94.667 300 14 2 2608 2906 500840947 500841245 1.370000e-126 464.0
58 TraesCS4A01G291900 chr2A 84.984 313 39 6 4054 4360 619858023 619858333 1.890000e-80 311.0
59 TraesCS4A01G291900 chr2A 96.970 33 1 0 146 178 763426641 763426673 1.000000e-03 56.5
60 TraesCS4A01G291900 chr1B 89.332 853 71 16 6131 6979 590996360 590997196 0.000000e+00 1053.0
61 TraesCS4A01G291900 chr1B 84.404 109 14 3 497 602 675710191 675710083 3.450000e-18 104.0
62 TraesCS4A01G291900 chr1B 76.336 131 20 4 494 613 585541982 585542112 7.570000e-05 60.2
63 TraesCS4A01G291900 chr1B 96.970 33 0 1 493 524 557412681 557412713 4.000000e-03 54.7
64 TraesCS4A01G291900 chr5D 88.361 842 82 13 6132 6971 510168910 510168083 0.000000e+00 998.0
65 TraesCS4A01G291900 chr5D 90.909 132 10 2 1860 1990 526752515 526752645 7.200000e-40 176.0
66 TraesCS4A01G291900 chr6D 87.911 852 89 12 6135 6985 32382483 32383321 0.000000e+00 990.0
67 TraesCS4A01G291900 chr6D 80.808 99 16 2 2445 2540 10715352 10715450 2.700000e-09 75.0
68 TraesCS4A01G291900 chr6A 87.441 852 92 14 6132 6979 36726334 36727174 0.000000e+00 966.0
69 TraesCS4A01G291900 chr6A 94.983 299 14 1 2609 2906 384349442 384349144 1.060000e-127 468.0
70 TraesCS4A01G291900 chr6A 94.684 301 15 1 2608 2907 460948248 460947948 3.820000e-127 466.0
71 TraesCS4A01G291900 chr6A 81.159 414 52 15 4056 4449 180927413 180927006 6.800000e-80 309.0
72 TraesCS4A01G291900 chr6A 97.059 34 1 0 146 179 37390044 37390011 2.720000e-04 58.4
73 TraesCS4A01G291900 chr7D 87.322 844 95 11 6132 6971 174123595 174122760 0.000000e+00 955.0
74 TraesCS4A01G291900 chr7D 88.276 145 16 1 1847 1990 7568435 7568291 9.310000e-39 172.0
75 TraesCS4A01G291900 chr5A 88.428 795 67 14 6199 6985 454706648 454707425 0.000000e+00 935.0
76 TraesCS4A01G291900 chr5A 94.737 304 14 2 2609 2910 687280673 687280370 8.200000e-129 472.0
77 TraesCS4A01G291900 chr2D 94.966 298 14 1 2612 2908 565529327 565529624 3.820000e-127 466.0
78 TraesCS4A01G291900 chr7A 94.667 300 14 2 2608 2906 264383165 264382867 1.370000e-126 464.0
79 TraesCS4A01G291900 chr5B 94.667 300 15 1 2611 2909 90981841 90982140 1.370000e-126 464.0
80 TraesCS4A01G291900 chr5B 85.000 80 12 0 494 573 250338349 250338428 1.610000e-11 82.4
81 TraesCS4A01G291900 chr5B 85.714 77 11 0 497 573 301641773 301641697 1.610000e-11 82.4
82 TraesCS4A01G291900 chr5B 85.714 77 11 0 497 573 364351065 364350989 1.610000e-11 82.4
83 TraesCS4A01G291900 chr5B 84.615 78 12 0 496 573 624592697 624592774 2.090000e-10 78.7
84 TraesCS4A01G291900 chr5B 95.349 43 2 0 146 188 537777703 537777745 1.260000e-07 69.4
85 TraesCS4A01G291900 chr2B 81.560 423 49 19 4050 4449 419553593 419554009 8.740000e-84 322.0
86 TraesCS4A01G291900 chr1D 83.232 328 46 7 4056 4377 475955273 475954949 6.850000e-75 292.0
87 TraesCS4A01G291900 chr1D 91.111 135 11 1 1860 1994 459867427 459867560 1.550000e-41 182.0
88 TraesCS4A01G291900 chr1D 100.000 30 0 0 495 524 132181327 132181356 1.000000e-03 56.5
89 TraesCS4A01G291900 chr1D 100.000 30 0 0 495 524 225661409 225661438 1.000000e-03 56.5
90 TraesCS4A01G291900 chr3D 80.189 424 55 11 4053 4455 349971334 349971749 2.460000e-74 291.0
91 TraesCS4A01G291900 chr3D 85.897 78 11 0 496 573 50751541 50751464 4.490000e-12 84.2
92 TraesCS4A01G291900 chr7B 87.162 148 15 2 1844 1987 747358618 747358765 1.560000e-36 165.0
93 TraesCS4A01G291900 chr7B 84.615 78 12 0 496 573 181619346 181619423 2.090000e-10 78.7
94 TraesCS4A01G291900 chr6B 80.714 140 22 5 2423 2560 20087231 20087367 3.450000e-18 104.0
95 TraesCS4A01G291900 chr6B 79.817 109 20 2 2427 2533 20032430 20032538 2.090000e-10 78.7
96 TraesCS4A01G291900 chr6B 90.698 43 3 1 491 533 708209348 708209307 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G291900 chr4A 594705438 594712422 6984 True 12899.000000 12899 100.000000 1 6985 1 chr4A.!!$R3 6984
1 TraesCS4A01G291900 chr4A 594730251 594742787 12536 False 4117.000000 11027 93.355500 1 6131 4 chr4A.!!$F2 6130
2 TraesCS4A01G291900 chr4A 563504118 563512659 8541 True 782.700000 1243 90.051429 781 5990 7 chr4A.!!$R6 5209
3 TraesCS4A01G291900 chr4A 563224008 563228763 4755 True 508.000000 835 87.264500 612 5836 4 chr4A.!!$R5 5224
4 TraesCS4A01G291900 chr4D 8622824 8629063 6239 True 1083.285714 2279 93.079286 4 5990 7 chr4D.!!$R3 5986
5 TraesCS4A01G291900 chr4D 8592990 8598743 5753 True 500.737500 979 88.134125 727 6113 8 chr4D.!!$R2 5386
6 TraesCS4A01G291900 chr4B 15921708 15927747 6039 True 851.437500 1572 91.233750 3 6131 8 chr4B.!!$R5 6128
7 TraesCS4A01G291900 chrUn 269814012 269815039 1027 True 1094.000000 1094 85.998000 4905 5990 1 chrUn.!!$R2 1085
8 TraesCS4A01G291900 chr2A 120720618 120721453 835 True 1055.000000 1055 89.327000 6128 6985 1 chr2A.!!$R1 857
9 TraesCS4A01G291900 chr2A 120736319 120737156 837 True 1018.000000 1018 88.488000 6128 6985 1 chr2A.!!$R2 857
10 TraesCS4A01G291900 chr2A 694779500 694780340 840 True 959.000000 959 87.383000 6135 6980 1 chr2A.!!$R3 845
11 TraesCS4A01G291900 chr1B 590996360 590997196 836 False 1053.000000 1053 89.332000 6131 6979 1 chr1B.!!$F3 848
12 TraesCS4A01G291900 chr5D 510168083 510168910 827 True 998.000000 998 88.361000 6132 6971 1 chr5D.!!$R1 839
13 TraesCS4A01G291900 chr6D 32382483 32383321 838 False 990.000000 990 87.911000 6135 6985 1 chr6D.!!$F2 850
14 TraesCS4A01G291900 chr6A 36726334 36727174 840 False 966.000000 966 87.441000 6132 6979 1 chr6A.!!$F1 847
15 TraesCS4A01G291900 chr7D 174122760 174123595 835 True 955.000000 955 87.322000 6132 6971 1 chr7D.!!$R2 839
16 TraesCS4A01G291900 chr5A 454706648 454707425 777 False 935.000000 935 88.428000 6199 6985 1 chr5A.!!$F1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 7517 4.821260 TGCAACTGTACACTTCATGAACAT 59.179 37.5 3.38 0.0 0.0 2.71 F
1072 7831 0.745845 CAATGGTTCAGCTCCCTCCG 60.746 60.0 0.00 0.0 0.0 4.63 F
1567 8350 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.0 3.82 F
1573 8356 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 8360 0.096976 GCACAGACACACACACACAC 59.903 55.000 0.0 0.0 0.00 3.82 R
2673 10567 0.611618 ATGCACCTTTCCAATGCGGA 60.612 50.000 0.0 0.0 44.40 5.54 R
2896 10790 6.601332 TGAAGTTGTTCAAATTACTCCCTCT 58.399 36.000 0.0 0.0 39.85 3.69 R
6193 19571 7.466725 GCAACACAAACCTTAAAGAAAAATCCC 60.467 37.037 0.0 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
556 7306 9.151177 TGGGTATATCTAGAGGTATTTTCGTTT 57.849 33.333 0.00 0.00 0.00 3.60
567 7317 9.886132 AGAGGTATTTTCGTTTTACATACATCT 57.114 29.630 0.00 0.00 36.90 2.90
762 7517 4.821260 TGCAACTGTACACTTCATGAACAT 59.179 37.500 3.38 0.00 0.00 2.71
1072 7831 0.745845 CAATGGTTCAGCTCCCTCCG 60.746 60.000 0.00 0.00 0.00 4.63
1558 8341 7.279981 ACGATATATATGCTTTTGTGTGTGTGT 59.720 33.333 0.00 0.00 0.00 3.72
1559 8342 7.583762 CGATATATATGCTTTTGTGTGTGTGTG 59.416 37.037 0.00 0.00 0.00 3.82
1560 8343 4.916983 ATATGCTTTTGTGTGTGTGTGT 57.083 36.364 0.00 0.00 0.00 3.72
1561 8344 2.344504 TGCTTTTGTGTGTGTGTGTG 57.655 45.000 0.00 0.00 0.00 3.82
1562 8345 1.611006 TGCTTTTGTGTGTGTGTGTGT 59.389 42.857 0.00 0.00 0.00 3.72
1563 8346 1.984990 GCTTTTGTGTGTGTGTGTGTG 59.015 47.619 0.00 0.00 0.00 3.82
1564 8347 2.606795 GCTTTTGTGTGTGTGTGTGTGT 60.607 45.455 0.00 0.00 0.00 3.72
1565 8348 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
1566 8349 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
1567 8350 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1568 8351 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1569 8352 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1570 8353 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1571 8354 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1572 8355 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1573 8356 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1574 8357 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1575 8358 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1576 8359 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1577 8360 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2270 9720 1.401761 TGGCAAAGATGTGCACAACT 58.598 45.000 25.72 24.02 46.81 3.16
2673 10567 8.740906 ACAAGCATGTCCCCTTTTATAAGGCT 62.741 42.308 6.45 0.00 41.99 4.58
2896 10790 7.177216 TGTCTTTAGGTCTAATAAACTCGGACA 59.823 37.037 0.00 0.00 28.92 4.02
6113 19489 7.598493 ACTCAACAATAATTTTTCCAACCATCG 59.402 33.333 0.00 0.00 0.00 3.84
6193 19571 1.336440 TCAGTCAATTTTGTGGCCGTG 59.664 47.619 0.00 0.00 0.00 4.94
6209 19587 3.368013 GGCCGTGGGATTTTTCTTTAAGG 60.368 47.826 0.00 0.00 0.00 2.69
6337 19718 3.701040 GCCCATTAACTGTGTGATCCATT 59.299 43.478 0.00 0.00 0.00 3.16
6349 19732 2.699846 GTGATCCATTCCTGCTCTCTCT 59.300 50.000 0.00 0.00 0.00 3.10
6351 19734 1.786937 TCCATTCCTGCTCTCTCTCC 58.213 55.000 0.00 0.00 0.00 3.71
6352 19735 0.758123 CCATTCCTGCTCTCTCTCCC 59.242 60.000 0.00 0.00 0.00 4.30
6354 19737 2.117865 CATTCCTGCTCTCTCTCCCTT 58.882 52.381 0.00 0.00 0.00 3.95
6355 19738 1.859302 TTCCTGCTCTCTCTCCCTTC 58.141 55.000 0.00 0.00 0.00 3.46
6356 19739 0.707024 TCCTGCTCTCTCTCCCTTCA 59.293 55.000 0.00 0.00 0.00 3.02
6357 19740 1.290431 TCCTGCTCTCTCTCCCTTCAT 59.710 52.381 0.00 0.00 0.00 2.57
6358 19741 2.117865 CCTGCTCTCTCTCCCTTCATT 58.882 52.381 0.00 0.00 0.00 2.57
6922 20335 9.649167 TTGAAAACTTTGGTATTTCGGTTTTTA 57.351 25.926 0.00 0.00 37.13 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1558 8341 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1559 8342 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1560 8343 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1561 8344 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1562 8345 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1563 8346 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1564 8347 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1565 8348 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1566 8349 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1567 8350 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1568 8351 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1569 8352 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1570 8353 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1571 8354 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1572 8355 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
1573 8356 1.128507 CAGACACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
1574 8357 1.270571 ACAGACACACACACACACACA 60.271 47.619 0.00 0.00 0.00 3.72
1575 8358 1.128507 CACAGACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
1576 8359 1.437625 CACAGACACACACACACACA 58.562 50.000 0.00 0.00 0.00 3.72
1577 8360 0.096976 GCACAGACACACACACACAC 59.903 55.000 0.00 0.00 0.00 3.82
2252 9702 1.610522 AGAGTTGTGCACATCTTTGCC 59.389 47.619 26.80 16.19 42.25 4.52
2270 9720 2.698797 GGGGGATTGTCGACTTGATAGA 59.301 50.000 17.92 0.00 0.00 1.98
2673 10567 0.611618 ATGCACCTTTCCAATGCGGA 60.612 50.000 0.00 0.00 44.40 5.54
2896 10790 6.601332 TGAAGTTGTTCAAATTACTCCCTCT 58.399 36.000 0.00 0.00 39.85 3.69
6193 19571 7.466725 GCAACACAAACCTTAAAGAAAAATCCC 60.467 37.037 0.00 0.00 0.00 3.85
6284 19665 2.770164 AGGAAATCGACTGACCCAAG 57.230 50.000 0.00 0.00 0.00 3.61
6337 19718 0.707024 TGAAGGGAGAGAGAGCAGGA 59.293 55.000 0.00 0.00 0.00 3.86
6375 19762 7.376435 ACAAAAGCAAAAGCACATAAAAACT 57.624 28.000 0.00 0.00 0.00 2.66
6548 19944 6.072728 TGCACACAACTTCGCTCTTAAATTAT 60.073 34.615 0.00 0.00 0.00 1.28
6658 20054 9.569122 ACTAGCCTTTAAGAAGAAACACAAATA 57.431 29.630 0.00 0.00 34.71 1.40
6659 20055 8.465273 ACTAGCCTTTAAGAAGAAACACAAAT 57.535 30.769 0.00 0.00 34.71 2.32
6660 20056 7.875327 ACTAGCCTTTAAGAAGAAACACAAA 57.125 32.000 0.00 0.00 34.71 2.83
6661 20057 8.208903 AGTACTAGCCTTTAAGAAGAAACACAA 58.791 33.333 0.00 0.00 34.71 3.33
6662 20058 7.732996 AGTACTAGCCTTTAAGAAGAAACACA 58.267 34.615 0.00 0.00 34.71 3.72
6663 20059 9.702494 TTAGTACTAGCCTTTAAGAAGAAACAC 57.298 33.333 2.23 0.00 34.71 3.32
6795 20205 3.967467 ATGAGGCATTCCAAGGAAGAT 57.033 42.857 7.69 0.00 37.56 2.40
6947 20360 4.202000 TGCGGCATTGGTATTATCACAAAG 60.202 41.667 0.00 0.00 0.00 2.77
6950 20364 2.924421 TGCGGCATTGGTATTATCACA 58.076 42.857 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.