Multiple sequence alignment - TraesCS4A01G291000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G291000 chr4A 100.000 2801 0 0 1 2801 594379956 594377156 0.000000e+00 5173.0
1 TraesCS4A01G291000 chr4A 90.090 111 11 0 1191 1301 594378823 594378713 8.090000e-31 145.0
2 TraesCS4A01G291000 chr4D 88.465 1101 92 20 1210 2300 8985934 8987009 0.000000e+00 1297.0
3 TraesCS4A01G291000 chr4D 85.321 654 54 23 3 648 8980024 8980643 3.040000e-179 638.0
4 TraesCS4A01G291000 chr4D 85.280 428 34 15 844 1252 8985610 8986027 5.580000e-112 414.0
5 TraesCS4A01G291000 chr4B 86.684 1149 78 28 916 2057 16889718 16890798 0.000000e+00 1205.0
6 TraesCS4A01G291000 chr4B 86.835 790 61 23 3 789 16888887 16889636 0.000000e+00 843.0
7 TraesCS4A01G291000 chr4B 86.722 241 27 3 2043 2283 16890841 16891076 2.140000e-66 263.0
8 TraesCS4A01G291000 chr4B 89.091 110 8 1 2453 2558 16891150 16891259 1.750000e-27 134.0
9 TraesCS4A01G291000 chr4B 88.889 63 3 3 2379 2437 16891113 16891175 1.080000e-09 75.0
10 TraesCS4A01G291000 chr1B 94.615 130 7 0 357 486 332584896 332584767 4.730000e-48 202.0
11 TraesCS4A01G291000 chr3B 80.000 130 20 5 2164 2287 238062371 238062242 1.070000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G291000 chr4A 594377156 594379956 2800 True 2659.0 5173 95.0450 1 2801 2 chr4A.!!$R1 2800
1 TraesCS4A01G291000 chr4D 8985610 8987009 1399 False 855.5 1297 86.8725 844 2300 2 chr4D.!!$F2 1456
2 TraesCS4A01G291000 chr4D 8980024 8980643 619 False 638.0 638 85.3210 3 648 1 chr4D.!!$F1 645
3 TraesCS4A01G291000 chr4B 16888887 16891259 2372 False 504.0 1205 87.6442 3 2558 5 chr4B.!!$F1 2555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 527 0.172803 CTGGGTCGACTTAACGGAGG 59.827 60.0 16.46 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2350 2460 0.031585 GCAAAGGGGTCCGTTGAAAC 59.968 55.0 14.89 0.0 43.74 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.689835 TGTCTTGGGTTATATGCTGCAATA 58.310 37.500 6.36 3.54 0.00 1.90
141 142 6.876257 TGAAAACTGCTTGTAAAATGTGGTTT 59.124 30.769 0.00 0.00 0.00 3.27
144 145 5.729510 ACTGCTTGTAAAATGTGGTTTGTT 58.270 33.333 0.00 0.00 0.00 2.83
145 146 5.580297 ACTGCTTGTAAAATGTGGTTTGTTG 59.420 36.000 0.00 0.00 0.00 3.33
146 147 5.724328 TGCTTGTAAAATGTGGTTTGTTGA 58.276 33.333 0.00 0.00 0.00 3.18
152 153 8.635877 TGTAAAATGTGGTTTGTTGATAACAC 57.364 30.769 0.00 0.00 41.97 3.32
153 154 6.820470 AAAATGTGGTTTGTTGATAACACG 57.180 33.333 0.00 0.00 41.97 4.49
154 155 5.759506 AATGTGGTTTGTTGATAACACGA 57.240 34.783 0.00 0.00 41.97 4.35
192 194 1.740025 GTTGCATCCCTAGAACTGCAC 59.260 52.381 11.14 5.45 43.74 4.57
202 204 4.323485 CCCTAGAACTGCACCTTACATCAA 60.323 45.833 0.00 0.00 0.00 2.57
230 232 2.417933 GGTCAGATGCTGTCACACATTC 59.582 50.000 0.00 0.00 32.61 2.67
235 237 4.155280 CAGATGCTGTCACACATTCATGAA 59.845 41.667 11.26 11.26 0.00 2.57
237 239 5.417894 AGATGCTGTCACACATTCATGAATT 59.582 36.000 18.41 7.62 0.00 2.17
238 240 4.800784 TGCTGTCACACATTCATGAATTG 58.199 39.130 18.41 19.42 0.00 2.32
243 245 6.614160 TGTCACACATTCATGAATTGTCATC 58.386 36.000 18.41 15.33 42.88 2.92
244 246 5.735892 GTCACACATTCATGAATTGTCATCG 59.264 40.000 18.41 12.76 42.88 3.84
245 247 5.032220 CACACATTCATGAATTGTCATCGG 58.968 41.667 18.41 7.32 42.88 4.18
246 248 4.701651 ACACATTCATGAATTGTCATCGGT 59.298 37.500 18.41 7.95 42.88 4.69
247 249 5.163723 ACACATTCATGAATTGTCATCGGTC 60.164 40.000 18.41 0.00 42.88 4.79
248 250 5.065602 CACATTCATGAATTGTCATCGGTCT 59.934 40.000 18.41 0.00 42.88 3.85
253 255 2.076100 GAATTGTCATCGGTCTGTGCA 58.924 47.619 0.00 0.00 0.00 4.57
254 256 2.183478 ATTGTCATCGGTCTGTGCAA 57.817 45.000 0.00 0.00 0.00 4.08
255 257 1.511850 TTGTCATCGGTCTGTGCAAG 58.488 50.000 0.00 0.00 0.00 4.01
256 258 0.392706 TGTCATCGGTCTGTGCAAGT 59.607 50.000 0.00 0.00 0.00 3.16
257 259 0.792640 GTCATCGGTCTGTGCAAGTG 59.207 55.000 0.00 0.00 0.00 3.16
258 260 0.392706 TCATCGGTCTGTGCAAGTGT 59.607 50.000 0.00 0.00 0.00 3.55
259 261 1.202639 TCATCGGTCTGTGCAAGTGTT 60.203 47.619 0.00 0.00 0.00 3.32
260 262 2.036604 TCATCGGTCTGTGCAAGTGTTA 59.963 45.455 0.00 0.00 0.00 2.41
261 263 1.860676 TCGGTCTGTGCAAGTGTTAC 58.139 50.000 0.00 0.00 0.00 2.50
262 264 1.137282 TCGGTCTGTGCAAGTGTTACA 59.863 47.619 0.00 0.00 0.00 2.41
263 265 2.143122 CGGTCTGTGCAAGTGTTACAT 58.857 47.619 0.00 0.00 0.00 2.29
264 266 2.157668 CGGTCTGTGCAAGTGTTACATC 59.842 50.000 0.00 0.00 0.00 3.06
265 267 2.484264 GGTCTGTGCAAGTGTTACATCC 59.516 50.000 0.00 0.00 0.00 3.51
266 268 2.484264 GTCTGTGCAAGTGTTACATCCC 59.516 50.000 0.00 0.00 0.00 3.85
267 269 2.371841 TCTGTGCAAGTGTTACATCCCT 59.628 45.455 0.00 0.00 0.00 4.20
268 270 3.580895 TCTGTGCAAGTGTTACATCCCTA 59.419 43.478 0.00 0.00 0.00 3.53
269 271 4.041075 TCTGTGCAAGTGTTACATCCCTAA 59.959 41.667 0.00 0.00 0.00 2.69
270 272 4.720046 TGTGCAAGTGTTACATCCCTAAA 58.280 39.130 0.00 0.00 0.00 1.85
271 273 5.133941 TGTGCAAGTGTTACATCCCTAAAA 58.866 37.500 0.00 0.00 0.00 1.52
278 280 5.067954 GTGTTACATCCCTAAAACTGTGGT 58.932 41.667 0.00 0.00 0.00 4.16
289 291 7.039363 TCCCTAAAACTGTGGTTATTTCCATTG 60.039 37.037 0.00 0.00 39.81 2.82
309 312 8.733458 TCCATTGTAGCTATTGAATATCATTGC 58.267 33.333 0.00 0.00 0.00 3.56
348 351 1.970917 GCGATGTGCAGTGCTGGTAC 61.971 60.000 17.60 6.51 45.45 3.34
524 527 0.172803 CTGGGTCGACTTAACGGAGG 59.827 60.000 16.46 0.00 0.00 4.30
525 528 0.251297 TGGGTCGACTTAACGGAGGA 60.251 55.000 16.46 0.00 0.00 3.71
566 570 2.238646 TCAATGTCGCCATACTTCCCTT 59.761 45.455 0.00 0.00 0.00 3.95
572 576 2.503765 TCGCCATACTTCCCTTGATCAA 59.496 45.455 8.12 8.12 0.00 2.57
580 584 2.609427 TCCCTTGATCAATCGCAGAG 57.391 50.000 8.96 0.00 43.63 3.35
614 621 9.208022 TCTGAAACTAAATACAGTGATGTGAAG 57.792 33.333 0.00 0.00 0.00 3.02
615 622 8.902540 TGAAACTAAATACAGTGATGTGAAGT 57.097 30.769 0.00 0.00 0.00 3.01
616 623 8.773645 TGAAACTAAATACAGTGATGTGAAGTG 58.226 33.333 0.00 0.00 0.00 3.16
617 624 8.677148 AAACTAAATACAGTGATGTGAAGTGT 57.323 30.769 0.00 0.00 35.42 3.55
618 625 9.772973 AAACTAAATACAGTGATGTGAAGTGTA 57.227 29.630 0.00 0.00 37.73 2.90
619 626 8.758633 ACTAAATACAGTGATGTGAAGTGTAC 57.241 34.615 0.00 0.00 36.53 2.90
620 627 8.585881 ACTAAATACAGTGATGTGAAGTGTACT 58.414 33.333 0.00 0.00 36.53 2.73
622 629 7.658179 AATACAGTGATGTGAAGTGTACTTG 57.342 36.000 1.35 0.00 36.53 3.16
625 632 3.391296 AGTGATGTGAAGTGTACTTGGGT 59.609 43.478 1.35 0.00 36.11 4.51
673 680 2.523015 CTTTGCTTGAATTAGCTGCCG 58.477 47.619 0.00 0.00 41.76 5.69
676 683 2.279741 TGCTTGAATTAGCTGCCGTAG 58.720 47.619 0.00 0.00 41.76 3.51
693 700 2.028385 CGTAGCTTTGGTACTGGAAGGT 60.028 50.000 0.00 10.99 39.30 3.50
697 704 3.844211 AGCTTTGGTACTGGAAGGTATCA 59.156 43.478 0.00 0.00 39.30 2.15
731 738 7.864108 TGTACAGAATGAATTCGAATCCAAT 57.136 32.000 11.83 0.00 41.56 3.16
735 742 6.548622 ACAGAATGAATTCGAATCCAATCCAT 59.451 34.615 11.83 5.84 41.56 3.41
740 747 7.350744 TGAATTCGAATCCAATCCATCATTT 57.649 32.000 11.83 0.00 0.00 2.32
747 754 6.461927 CGAATCCAATCCATCATTTTGGTCAT 60.462 38.462 0.00 0.00 40.62 3.06
775 782 9.412390 CTTTTGTTTGAATTCAGTTTCATTTCG 57.588 29.630 8.41 0.00 35.64 3.46
777 784 7.678194 TGTTTGAATTCAGTTTCATTTCGTC 57.322 32.000 8.41 0.00 35.64 4.20
789 796 0.869730 ATTTCGTCGGTTCAAACCCG 59.130 50.000 6.34 5.45 46.53 5.28
790 797 0.461693 TTTCGTCGGTTCAAACCCGT 60.462 50.000 6.34 0.00 46.53 5.28
791 798 0.387202 TTCGTCGGTTCAAACCCGTA 59.613 50.000 6.34 0.00 46.53 4.02
793 800 1.000731 TCGTCGGTTCAAACCCGTATT 59.999 47.619 6.34 0.00 46.53 1.89
794 801 1.799994 CGTCGGTTCAAACCCGTATTT 59.200 47.619 6.34 0.00 46.53 1.40
795 802 2.223845 CGTCGGTTCAAACCCGTATTTT 59.776 45.455 6.34 0.00 46.53 1.82
796 803 3.303924 CGTCGGTTCAAACCCGTATTTTT 60.304 43.478 6.34 0.00 46.53 1.94
821 828 3.681473 GGTACAAACCCCAGCTGC 58.319 61.111 8.66 0.00 40.21 5.25
825 832 0.618458 TACAAACCCCAGCTGCCTAG 59.382 55.000 8.66 0.00 0.00 3.02
839 846 1.375523 CCTAGCGTCGCCAAACCTT 60.376 57.895 14.86 0.00 0.00 3.50
869 877 1.760613 TGTTCGGCCTGGTTATCCTAG 59.239 52.381 0.00 0.00 34.23 3.02
880 888 4.368067 TGGTTATCCTAGTGGGCTTTACT 58.632 43.478 0.00 0.00 34.39 2.24
885 894 1.004277 CCTAGTGGGCTTTACTTGGCA 59.996 52.381 0.00 0.00 35.04 4.92
887 896 1.620822 AGTGGGCTTTACTTGGCAAG 58.379 50.000 25.06 25.06 0.00 4.01
891 900 2.769095 TGGGCTTTACTTGGCAAGTTTT 59.231 40.909 35.13 15.51 42.81 2.43
899 908 2.028925 GGCAAGTTTTGTGGCCCG 59.971 61.111 0.00 0.00 40.55 6.13
900 909 2.791868 GGCAAGTTTTGTGGCCCGT 61.792 57.895 0.00 0.00 40.55 5.28
908 917 0.766131 TTTGTGGCCCGTAGAAAGGA 59.234 50.000 0.00 0.00 0.00 3.36
920 929 2.278332 AGAAAGGAGGGCTTGTTGTC 57.722 50.000 0.00 0.00 0.00 3.18
950 959 2.352032 GCACGGCCTAGTCTGGACT 61.352 63.158 0.00 8.36 45.02 3.85
954 963 1.687493 GGCCTAGTCTGGACTGCCT 60.687 63.158 18.76 0.00 43.36 4.75
961 970 1.301716 TCTGGACTGCCTGTTTCGC 60.302 57.895 0.00 0.00 34.91 4.70
1192 1234 2.256461 GCAAGAAAGCAGTGCCCG 59.744 61.111 12.58 0.00 31.94 6.13
1195 1237 3.790416 AAGAAAGCAGTGCCCGCCA 62.790 57.895 12.58 0.00 0.00 5.69
1243 1285 4.107051 CGGCCGGCAAGAAAGCAG 62.107 66.667 30.85 3.27 35.83 4.24
1244 1286 2.985847 GGCCGGCAAGAAAGCAGT 60.986 61.111 30.85 0.00 35.83 4.40
1245 1287 2.256461 GCCGGCAAGAAAGCAGTG 59.744 61.111 24.80 0.00 35.83 3.66
1246 1288 2.256461 CCGGCAAGAAAGCAGTGC 59.744 61.111 7.13 7.13 37.55 4.40
1249 1291 2.256461 GCAAGAAAGCAGTGCCCG 59.744 61.111 12.58 0.00 31.94 6.13
1250 1292 2.256461 CAAGAAAGCAGTGCCCGC 59.744 61.111 12.58 0.58 0.00 6.13
1251 1293 2.985847 AAGAAAGCAGTGCCCGCC 60.986 61.111 12.58 0.00 0.00 6.13
1252 1294 3.790416 AAGAAAGCAGTGCCCGCCA 62.790 57.895 12.58 0.00 0.00 5.69
1253 1295 4.043200 GAAAGCAGTGCCCGCCAC 62.043 66.667 12.58 0.00 45.01 5.01
1308 1350 2.743928 AAGAAAGGAGCAGCGCCG 60.744 61.111 9.85 0.00 0.00 6.46
1543 1585 3.468140 GGGAGTGGTACGAGGGCC 61.468 72.222 0.00 0.00 0.00 5.80
1544 1586 2.682494 GGAGTGGTACGAGGGCCA 60.682 66.667 6.18 0.00 0.00 5.36
1728 1770 2.365635 CCGGTGGAGGTCTGGGAT 60.366 66.667 0.00 0.00 0.00 3.85
1746 1788 3.628257 GGGATTGGATTTGTGAGATGGGT 60.628 47.826 0.00 0.00 0.00 4.51
1755 1797 0.678048 GTGAGATGGGTGGTGGCTTC 60.678 60.000 0.00 0.00 0.00 3.86
1764 1806 3.050275 GGTGGCTTCGTGCAGGAC 61.050 66.667 8.96 0.00 45.15 3.85
1782 1824 1.612442 CGGGGAGGTGGGAGAAGAA 60.612 63.158 0.00 0.00 0.00 2.52
1783 1825 1.617947 CGGGGAGGTGGGAGAAGAAG 61.618 65.000 0.00 0.00 0.00 2.85
1784 1826 0.252742 GGGGAGGTGGGAGAAGAAGA 60.253 60.000 0.00 0.00 0.00 2.87
1785 1827 1.657804 GGGAGGTGGGAGAAGAAGAA 58.342 55.000 0.00 0.00 0.00 2.52
1789 1831 3.328050 GGAGGTGGGAGAAGAAGAAGAAA 59.672 47.826 0.00 0.00 0.00 2.52
1796 1838 4.000325 GGAGAAGAAGAAGAAACAGAGGC 59.000 47.826 0.00 0.00 0.00 4.70
1834 1876 8.208224 TGAACTCTGAAGGTAAACAATCTAACA 58.792 33.333 0.00 0.00 0.00 2.41
1835 1877 9.220767 GAACTCTGAAGGTAAACAATCTAACAT 57.779 33.333 0.00 0.00 0.00 2.71
1837 1879 9.220767 ACTCTGAAGGTAAACAATCTAACATTC 57.779 33.333 0.00 0.00 34.25 2.67
1857 1899 2.863137 TCCTGCAAACGCAAAATTGTTC 59.137 40.909 0.00 0.00 39.39 3.18
1872 1914 1.299976 GTTCCCCGGAGCAATCTGT 59.700 57.895 0.73 0.00 0.00 3.41
1874 1916 2.124570 CCCCGGAGCAATCTGTGG 60.125 66.667 0.73 0.00 0.00 4.17
1883 1925 3.696051 GGAGCAATCTGTGGCTAATTTGA 59.304 43.478 0.00 0.00 41.22 2.69
1884 1926 4.439289 GGAGCAATCTGTGGCTAATTTGAC 60.439 45.833 0.00 0.00 41.22 3.18
1896 1938 4.378874 GGCTAATTTGACTCTGCACTTCAC 60.379 45.833 0.00 0.00 0.00 3.18
1901 1943 4.818534 TTGACTCTGCACTTCACATTTC 57.181 40.909 0.00 0.00 0.00 2.17
1904 1946 3.406764 ACTCTGCACTTCACATTTCTCC 58.593 45.455 0.00 0.00 0.00 3.71
1908 1950 2.821378 TGCACTTCACATTTCTCCCATG 59.179 45.455 0.00 0.00 0.00 3.66
1911 1953 4.022068 GCACTTCACATTTCTCCCATGAAA 60.022 41.667 0.00 0.00 39.79 2.69
1961 2004 2.579873 AGATGCAGGTGACATAATGCC 58.420 47.619 0.00 0.00 37.89 4.40
1977 2020 0.331278 TGCCGTGGGAAGGATCATTT 59.669 50.000 0.00 0.00 0.00 2.32
1992 2035 5.598005 AGGATCATTTTGTGGTGTCTTTTGA 59.402 36.000 0.00 0.00 0.00 2.69
2006 2049 3.491447 GTCTTTTGACCTGCAAGTGCAAT 60.491 43.478 7.49 0.00 44.88 3.56
2057 2100 7.819415 CAGTGACATTTTGTGTATCCTCTCTAA 59.181 37.037 0.00 0.00 42.36 2.10
2065 2165 4.219944 TGTGTATCCTCTCTAACGTTTGCT 59.780 41.667 5.91 0.00 0.00 3.91
2078 2178 0.179205 GTTTGCTGTCTCTGCATCGC 60.179 55.000 0.00 0.00 38.06 4.58
2082 2182 4.819761 TGTCTCTGCATCGCGGCC 62.820 66.667 6.13 0.00 34.49 6.13
2112 2212 9.469807 CCAATTGTGTATTCTCTAGCTAGTAAG 57.530 37.037 20.10 11.45 0.00 2.34
2146 2248 2.036217 CACTGGTTGATGTTGGCAATGT 59.964 45.455 1.92 0.00 0.00 2.71
2176 2278 3.541632 ACGGTTGGGTCATATGATGTTC 58.458 45.455 9.02 0.00 0.00 3.18
2178 2280 4.199310 CGGTTGGGTCATATGATGTTCTT 58.801 43.478 9.02 0.00 0.00 2.52
2197 2299 5.628797 TCTTTGTGGCTGTATGGATATGA 57.371 39.130 0.00 0.00 0.00 2.15
2249 2356 0.107897 GCCGTGGATGGTATGACACA 60.108 55.000 0.00 0.00 33.62 3.72
2257 2364 4.072131 GGATGGTATGACACACAACAGTT 58.928 43.478 0.00 0.00 0.00 3.16
2259 2366 5.009610 GGATGGTATGACACACAACAGTTTT 59.990 40.000 0.00 0.00 0.00 2.43
2306 2416 9.803507 AGTGTGTTAAATGATGATCATATGGAT 57.196 29.630 8.54 0.00 35.76 3.41
2307 2417 9.836076 GTGTGTTAAATGATGATCATATGGATG 57.164 33.333 8.54 0.00 35.76 3.51
2309 2419 7.972277 GTGTTAAATGATGATCATATGGATGCC 59.028 37.037 8.54 0.00 35.76 4.40
2310 2420 5.830000 AAATGATGATCATATGGATGCCG 57.170 39.130 8.54 0.00 35.76 5.69
2311 2421 3.986996 TGATGATCATATGGATGCCGT 57.013 42.857 8.54 0.00 36.00 5.68
2313 2423 3.261390 TGATGATCATATGGATGCCGTGA 59.739 43.478 8.54 0.00 36.00 4.35
2314 2424 3.044235 TGATCATATGGATGCCGTGAC 57.956 47.619 2.13 0.00 36.00 3.67
2316 2426 3.831911 TGATCATATGGATGCCGTGACTA 59.168 43.478 2.13 0.00 36.00 2.59
2318 2428 4.681074 TCATATGGATGCCGTGACTAAA 57.319 40.909 2.13 0.00 32.62 1.85
2319 2429 4.631131 TCATATGGATGCCGTGACTAAAG 58.369 43.478 2.13 0.00 32.62 1.85
2320 2430 4.100963 TCATATGGATGCCGTGACTAAAGT 59.899 41.667 2.13 0.00 32.62 2.66
2321 2431 5.303333 TCATATGGATGCCGTGACTAAAGTA 59.697 40.000 2.13 0.00 32.62 2.24
2322 2432 3.520290 TGGATGCCGTGACTAAAGTAG 57.480 47.619 0.00 0.00 0.00 2.57
2323 2433 2.167693 TGGATGCCGTGACTAAAGTAGG 59.832 50.000 0.00 0.00 0.00 3.18
2324 2434 2.429610 GGATGCCGTGACTAAAGTAGGA 59.570 50.000 3.74 0.00 0.00 2.94
2325 2435 3.118884 GGATGCCGTGACTAAAGTAGGAA 60.119 47.826 3.74 0.00 0.00 3.36
2326 2436 3.587797 TGCCGTGACTAAAGTAGGAAG 57.412 47.619 3.74 0.00 0.00 3.46
2327 2437 2.895404 TGCCGTGACTAAAGTAGGAAGT 59.105 45.455 3.74 0.00 0.00 3.01
2328 2438 3.251571 GCCGTGACTAAAGTAGGAAGTG 58.748 50.000 3.74 0.00 0.00 3.16
2329 2439 3.305881 GCCGTGACTAAAGTAGGAAGTGT 60.306 47.826 3.74 0.00 0.00 3.55
2330 2440 4.082571 GCCGTGACTAAAGTAGGAAGTGTA 60.083 45.833 3.74 0.00 0.00 2.90
2331 2441 5.393896 GCCGTGACTAAAGTAGGAAGTGTAT 60.394 44.000 3.74 0.00 0.00 2.29
2332 2442 6.628185 CCGTGACTAAAGTAGGAAGTGTATT 58.372 40.000 0.00 0.00 0.00 1.89
2333 2443 6.530534 CCGTGACTAAAGTAGGAAGTGTATTG 59.469 42.308 0.00 0.00 0.00 1.90
2334 2444 7.088905 CGTGACTAAAGTAGGAAGTGTATTGT 58.911 38.462 0.00 0.00 0.00 2.71
2335 2445 8.239314 CGTGACTAAAGTAGGAAGTGTATTGTA 58.761 37.037 0.00 0.00 0.00 2.41
2336 2446 9.570488 GTGACTAAAGTAGGAAGTGTATTGTAG 57.430 37.037 0.00 0.00 0.00 2.74
2337 2447 8.248945 TGACTAAAGTAGGAAGTGTATTGTAGC 58.751 37.037 0.00 0.00 0.00 3.58
2338 2448 8.363761 ACTAAAGTAGGAAGTGTATTGTAGCT 57.636 34.615 0.00 0.00 0.00 3.32
2339 2449 8.251721 ACTAAAGTAGGAAGTGTATTGTAGCTG 58.748 37.037 0.00 0.00 0.00 4.24
2340 2450 6.607004 AAGTAGGAAGTGTATTGTAGCTGT 57.393 37.500 0.00 0.00 0.00 4.40
2341 2451 5.967088 AGTAGGAAGTGTATTGTAGCTGTG 58.033 41.667 0.00 0.00 0.00 3.66
2342 2452 4.891992 AGGAAGTGTATTGTAGCTGTGT 57.108 40.909 0.00 0.00 0.00 3.72
2343 2453 5.995565 AGGAAGTGTATTGTAGCTGTGTA 57.004 39.130 0.00 0.00 0.00 2.90
2344 2454 5.721232 AGGAAGTGTATTGTAGCTGTGTAC 58.279 41.667 0.00 0.00 0.00 2.90
2345 2455 5.245301 AGGAAGTGTATTGTAGCTGTGTACA 59.755 40.000 0.00 0.00 0.00 2.90
2346 2456 5.347907 GGAAGTGTATTGTAGCTGTGTACAC 59.652 44.000 19.36 19.36 43.22 2.90
2347 2457 4.482386 AGTGTATTGTAGCTGTGTACACG 58.518 43.478 20.61 15.73 45.87 4.49
2348 2458 3.060363 GTGTATTGTAGCTGTGTACACGC 59.940 47.826 25.33 25.33 36.79 5.34
2349 2459 2.743636 ATTGTAGCTGTGTACACGCT 57.256 45.000 32.30 32.30 41.41 5.07
2350 2460 1.778334 TTGTAGCTGTGTACACGCTG 58.222 50.000 34.73 23.44 39.85 5.18
2351 2461 0.671796 TGTAGCTGTGTACACGCTGT 59.328 50.000 34.73 22.45 39.85 4.40
2352 2462 1.067974 TGTAGCTGTGTACACGCTGTT 59.932 47.619 34.73 22.60 39.85 3.16
2353 2463 2.132762 GTAGCTGTGTACACGCTGTTT 58.867 47.619 34.73 21.72 39.85 2.83
2354 2464 1.217882 AGCTGTGTACACGCTGTTTC 58.782 50.000 30.73 13.23 38.81 2.78
2355 2465 0.934496 GCTGTGTACACGCTGTTTCA 59.066 50.000 25.37 6.90 0.00 2.69
2356 2466 1.329292 GCTGTGTACACGCTGTTTCAA 59.671 47.619 25.37 6.24 0.00 2.69
2357 2467 2.849502 GCTGTGTACACGCTGTTTCAAC 60.850 50.000 25.37 0.85 0.00 3.18
2358 2468 1.325037 TGTGTACACGCTGTTTCAACG 59.675 47.619 20.61 0.00 0.00 4.10
2359 2469 0.931702 TGTACACGCTGTTTCAACGG 59.068 50.000 0.00 0.00 38.33 4.44
2360 2470 1.210870 GTACACGCTGTTTCAACGGA 58.789 50.000 2.50 0.00 37.48 4.69
2361 2471 1.071041 GTACACGCTGTTTCAACGGAC 60.071 52.381 2.50 0.00 37.48 4.79
2362 2472 1.278637 CACGCTGTTTCAACGGACC 59.721 57.895 2.50 0.00 37.48 4.46
2363 2473 1.890510 ACGCTGTTTCAACGGACCC 60.891 57.895 2.50 0.00 37.48 4.46
2364 2474 2.613506 CGCTGTTTCAACGGACCCC 61.614 63.158 2.50 0.00 37.48 4.95
2365 2475 1.228154 GCTGTTTCAACGGACCCCT 60.228 57.895 2.50 0.00 37.48 4.79
2366 2476 0.822121 GCTGTTTCAACGGACCCCTT 60.822 55.000 2.50 0.00 37.48 3.95
2367 2477 1.687563 CTGTTTCAACGGACCCCTTT 58.312 50.000 0.00 0.00 37.48 3.11
2368 2478 1.336755 CTGTTTCAACGGACCCCTTTG 59.663 52.381 0.00 0.00 37.48 2.77
2369 2479 0.031585 GTTTCAACGGACCCCTTTGC 59.968 55.000 0.00 0.00 33.55 3.68
2370 2480 0.395862 TTTCAACGGACCCCTTTGCA 60.396 50.000 0.00 0.00 33.55 4.08
2371 2481 0.395862 TTCAACGGACCCCTTTGCAA 60.396 50.000 0.00 0.00 33.55 4.08
2372 2482 1.104577 TCAACGGACCCCTTTGCAAC 61.105 55.000 0.00 0.00 33.55 4.17
2373 2483 1.830847 AACGGACCCCTTTGCAACC 60.831 57.895 0.00 0.00 0.00 3.77
2374 2484 2.203422 CGGACCCCTTTGCAACCA 60.203 61.111 0.00 0.00 0.00 3.67
2375 2485 1.606313 CGGACCCCTTTGCAACCAT 60.606 57.895 0.00 0.00 0.00 3.55
2376 2486 1.595093 CGGACCCCTTTGCAACCATC 61.595 60.000 0.00 0.00 0.00 3.51
2377 2487 1.595093 GGACCCCTTTGCAACCATCG 61.595 60.000 0.00 0.00 0.00 3.84
2416 2526 3.070076 CTTCAGCAGAAGCCGCATA 57.930 52.632 5.87 0.00 44.25 3.14
2417 2527 0.935898 CTTCAGCAGAAGCCGCATAG 59.064 55.000 5.87 0.00 44.25 2.23
2418 2528 0.250234 TTCAGCAGAAGCCGCATAGT 59.750 50.000 0.00 0.00 43.56 2.12
2419 2529 0.179100 TCAGCAGAAGCCGCATAGTC 60.179 55.000 0.00 0.00 43.56 2.59
2420 2530 0.179089 CAGCAGAAGCCGCATAGTCT 60.179 55.000 0.00 0.00 43.56 3.24
2421 2531 0.179089 AGCAGAAGCCGCATAGTCTG 60.179 55.000 8.31 8.31 43.56 3.51
2422 2532 0.179100 GCAGAAGCCGCATAGTCTGA 60.179 55.000 14.18 0.00 39.94 3.27
2423 2533 1.539929 GCAGAAGCCGCATAGTCTGAT 60.540 52.381 14.18 0.00 39.94 2.90
2424 2534 2.288457 GCAGAAGCCGCATAGTCTGATA 60.288 50.000 14.18 0.00 39.94 2.15
2425 2535 3.616076 GCAGAAGCCGCATAGTCTGATAT 60.616 47.826 14.18 0.00 39.94 1.63
2426 2536 4.380973 GCAGAAGCCGCATAGTCTGATATA 60.381 45.833 14.18 0.00 39.94 0.86
2427 2537 5.714047 CAGAAGCCGCATAGTCTGATATAA 58.286 41.667 7.31 0.00 39.94 0.98
2428 2538 5.574830 CAGAAGCCGCATAGTCTGATATAAC 59.425 44.000 7.31 0.00 39.94 1.89
2429 2539 5.243954 AGAAGCCGCATAGTCTGATATAACA 59.756 40.000 0.00 0.00 0.00 2.41
2430 2540 5.667539 AGCCGCATAGTCTGATATAACAT 57.332 39.130 0.00 0.00 0.00 2.71
2431 2541 5.655488 AGCCGCATAGTCTGATATAACATC 58.345 41.667 0.00 0.00 0.00 3.06
2432 2542 5.185828 AGCCGCATAGTCTGATATAACATCA 59.814 40.000 0.00 0.00 0.00 3.07
2433 2543 6.045318 GCCGCATAGTCTGATATAACATCAT 58.955 40.000 0.00 0.00 0.00 2.45
2434 2544 6.199908 GCCGCATAGTCTGATATAACATCATC 59.800 42.308 0.00 0.00 0.00 2.92
2435 2545 7.260603 CCGCATAGTCTGATATAACATCATCA 58.739 38.462 0.00 0.00 0.00 3.07
2436 2546 7.924947 CCGCATAGTCTGATATAACATCATCAT 59.075 37.037 0.00 0.00 31.05 2.45
2437 2547 9.310716 CGCATAGTCTGATATAACATCATCATT 57.689 33.333 0.00 0.00 31.05 2.57
2451 2561 7.851387 ACATCATCATTCATCATCATCTAGC 57.149 36.000 0.00 0.00 0.00 3.42
2452 2562 7.625469 ACATCATCATTCATCATCATCTAGCT 58.375 34.615 0.00 0.00 0.00 3.32
2461 2571 0.467384 ATCATCTAGCTGCGTGGCTT 59.533 50.000 9.28 0.00 42.97 4.35
2475 2585 6.348458 GCTGCGTGGCTTTTATATTCATCATA 60.348 38.462 0.00 0.00 0.00 2.15
2495 2609 6.798482 TCATAATCTGTATGCAGGCAAAAAG 58.202 36.000 11.15 0.00 42.78 2.27
2507 2621 1.969103 GCAAAAAGCCAGCGAGTTAG 58.031 50.000 0.00 0.00 37.23 2.34
2518 2632 2.863740 CAGCGAGTTAGAACACAACACA 59.136 45.455 0.00 0.00 0.00 3.72
2519 2633 3.060272 CAGCGAGTTAGAACACAACACAG 60.060 47.826 0.00 0.00 0.00 3.66
2558 2672 1.074889 GGGCTTTCACCCCTTTCTACA 59.925 52.381 0.00 0.00 45.00 2.74
2559 2673 2.490168 GGGCTTTCACCCCTTTCTACAA 60.490 50.000 0.00 0.00 45.00 2.41
2560 2674 3.431415 GGCTTTCACCCCTTTCTACAAT 58.569 45.455 0.00 0.00 0.00 2.71
2561 2675 4.569015 GGGCTTTCACCCCTTTCTACAATA 60.569 45.833 0.00 0.00 45.00 1.90
2562 2676 5.201243 GGCTTTCACCCCTTTCTACAATAT 58.799 41.667 0.00 0.00 0.00 1.28
2563 2677 6.362248 GGCTTTCACCCCTTTCTACAATATA 58.638 40.000 0.00 0.00 0.00 0.86
2564 2678 6.831868 GGCTTTCACCCCTTTCTACAATATAA 59.168 38.462 0.00 0.00 0.00 0.98
2565 2679 7.505923 GGCTTTCACCCCTTTCTACAATATAAT 59.494 37.037 0.00 0.00 0.00 1.28
2566 2680 8.568794 GCTTTCACCCCTTTCTACAATATAATC 58.431 37.037 0.00 0.00 0.00 1.75
2567 2681 8.671384 TTTCACCCCTTTCTACAATATAATCG 57.329 34.615 0.00 0.00 0.00 3.34
2568 2682 6.228258 TCACCCCTTTCTACAATATAATCGC 58.772 40.000 0.00 0.00 0.00 4.58
2569 2683 6.042781 TCACCCCTTTCTACAATATAATCGCT 59.957 38.462 0.00 0.00 0.00 4.93
2570 2684 6.369065 CACCCCTTTCTACAATATAATCGCTC 59.631 42.308 0.00 0.00 0.00 5.03
2571 2685 6.042781 ACCCCTTTCTACAATATAATCGCTCA 59.957 38.462 0.00 0.00 0.00 4.26
2572 2686 6.934645 CCCCTTTCTACAATATAATCGCTCAA 59.065 38.462 0.00 0.00 0.00 3.02
2573 2687 7.095187 CCCCTTTCTACAATATAATCGCTCAAC 60.095 40.741 0.00 0.00 0.00 3.18
2574 2688 7.359264 CCCTTTCTACAATATAATCGCTCAACG 60.359 40.741 0.00 0.00 45.62 4.10
2575 2689 7.359264 CCTTTCTACAATATAATCGCTCAACGG 60.359 40.741 0.00 0.00 43.89 4.44
2576 2690 6.321848 TCTACAATATAATCGCTCAACGGA 57.678 37.500 0.00 0.00 43.89 4.69
2577 2691 6.920817 TCTACAATATAATCGCTCAACGGAT 58.079 36.000 0.00 0.00 43.89 4.18
2578 2692 8.047413 TCTACAATATAATCGCTCAACGGATA 57.953 34.615 0.00 0.00 43.89 2.59
2579 2693 6.946229 ACAATATAATCGCTCAACGGATAC 57.054 37.500 0.00 0.00 43.89 2.24
2580 2694 6.452242 ACAATATAATCGCTCAACGGATACA 58.548 36.000 0.00 0.00 43.89 2.29
2581 2695 7.097192 ACAATATAATCGCTCAACGGATACAT 58.903 34.615 0.00 0.00 43.89 2.29
2582 2696 8.248253 ACAATATAATCGCTCAACGGATACATA 58.752 33.333 0.00 0.00 43.89 2.29
2583 2697 9.083080 CAATATAATCGCTCAACGGATACATAA 57.917 33.333 0.00 0.00 43.89 1.90
2584 2698 6.946229 ATAATCGCTCAACGGATACATAAC 57.054 37.500 0.00 0.00 43.89 1.89
2585 2699 3.088194 TCGCTCAACGGATACATAACC 57.912 47.619 0.00 0.00 43.89 2.85
2586 2700 2.427812 TCGCTCAACGGATACATAACCA 59.572 45.455 0.00 0.00 43.89 3.67
2587 2701 2.794910 CGCTCAACGGATACATAACCAG 59.205 50.000 0.00 0.00 38.44 4.00
2588 2702 3.737047 CGCTCAACGGATACATAACCAGT 60.737 47.826 0.00 0.00 38.44 4.00
2589 2703 4.189231 GCTCAACGGATACATAACCAGTT 58.811 43.478 0.00 0.00 0.00 3.16
2590 2704 4.270325 GCTCAACGGATACATAACCAGTTC 59.730 45.833 0.00 0.00 0.00 3.01
2591 2705 5.661458 CTCAACGGATACATAACCAGTTCT 58.339 41.667 0.00 0.00 0.00 3.01
2592 2706 6.045072 TCAACGGATACATAACCAGTTCTT 57.955 37.500 0.00 0.00 0.00 2.52
2593 2707 7.172868 TCAACGGATACATAACCAGTTCTTA 57.827 36.000 0.00 0.00 0.00 2.10
2594 2708 7.037438 TCAACGGATACATAACCAGTTCTTAC 58.963 38.462 0.00 0.00 0.00 2.34
2595 2709 6.534475 ACGGATACATAACCAGTTCTTACA 57.466 37.500 0.00 0.00 0.00 2.41
2596 2710 7.120923 ACGGATACATAACCAGTTCTTACAT 57.879 36.000 0.00 0.00 0.00 2.29
2597 2711 7.208080 ACGGATACATAACCAGTTCTTACATC 58.792 38.462 0.00 0.00 0.00 3.06
2598 2712 7.147794 ACGGATACATAACCAGTTCTTACATCA 60.148 37.037 0.00 0.00 0.00 3.07
2599 2713 7.382488 CGGATACATAACCAGTTCTTACATCAG 59.618 40.741 0.00 0.00 0.00 2.90
2600 2714 8.421784 GGATACATAACCAGTTCTTACATCAGA 58.578 37.037 0.00 0.00 0.00 3.27
2601 2715 9.469807 GATACATAACCAGTTCTTACATCAGAG 57.530 37.037 0.00 0.00 0.00 3.35
2602 2716 7.246171 ACATAACCAGTTCTTACATCAGAGT 57.754 36.000 0.00 0.00 0.00 3.24
2603 2717 7.099764 ACATAACCAGTTCTTACATCAGAGTG 58.900 38.462 0.00 0.00 0.00 3.51
2604 2718 3.931578 ACCAGTTCTTACATCAGAGTGC 58.068 45.455 0.00 0.00 0.00 4.40
2605 2719 3.324846 ACCAGTTCTTACATCAGAGTGCA 59.675 43.478 0.00 0.00 0.00 4.57
2606 2720 3.931468 CCAGTTCTTACATCAGAGTGCAG 59.069 47.826 0.00 0.00 0.00 4.41
2607 2721 3.370366 CAGTTCTTACATCAGAGTGCAGC 59.630 47.826 0.00 0.00 0.00 5.25
2608 2722 3.007290 AGTTCTTACATCAGAGTGCAGCA 59.993 43.478 0.00 0.00 0.00 4.41
2609 2723 3.683365 TCTTACATCAGAGTGCAGCAA 57.317 42.857 0.00 0.00 0.00 3.91
2610 2724 4.212143 TCTTACATCAGAGTGCAGCAAT 57.788 40.909 0.00 0.00 0.00 3.56
2611 2725 5.343307 TCTTACATCAGAGTGCAGCAATA 57.657 39.130 0.00 0.00 0.00 1.90
2612 2726 5.111989 TCTTACATCAGAGTGCAGCAATAC 58.888 41.667 0.00 0.00 0.00 1.89
2613 2727 3.339253 ACATCAGAGTGCAGCAATACA 57.661 42.857 0.00 0.00 0.00 2.29
2614 2728 3.678289 ACATCAGAGTGCAGCAATACAA 58.322 40.909 0.00 0.00 0.00 2.41
2615 2729 4.074259 ACATCAGAGTGCAGCAATACAAA 58.926 39.130 0.00 0.00 0.00 2.83
2616 2730 4.155462 ACATCAGAGTGCAGCAATACAAAG 59.845 41.667 0.00 0.00 0.00 2.77
2617 2731 3.076621 TCAGAGTGCAGCAATACAAAGG 58.923 45.455 0.00 0.00 0.00 3.11
2618 2732 1.815003 AGAGTGCAGCAATACAAAGGC 59.185 47.619 0.00 0.00 0.00 4.35
2619 2733 1.815003 GAGTGCAGCAATACAAAGGCT 59.185 47.619 0.00 0.00 38.70 4.58
2627 2741 5.824904 AGCAATACAAAGGCTGTGAATAG 57.175 39.130 12.68 0.00 39.20 1.73
2628 2742 5.500234 AGCAATACAAAGGCTGTGAATAGA 58.500 37.500 12.68 0.00 39.20 1.98
2629 2743 5.945784 AGCAATACAAAGGCTGTGAATAGAA 59.054 36.000 12.68 0.00 39.20 2.10
2630 2744 6.604795 AGCAATACAAAGGCTGTGAATAGAAT 59.395 34.615 12.68 0.00 39.20 2.40
2631 2745 6.914757 GCAATACAAAGGCTGTGAATAGAATC 59.085 38.462 12.68 0.00 39.20 2.52
2632 2746 7.420800 CAATACAAAGGCTGTGAATAGAATCC 58.579 38.462 12.68 0.00 39.20 3.01
2633 2747 4.273318 ACAAAGGCTGTGAATAGAATCCC 58.727 43.478 12.68 0.00 36.69 3.85
2634 2748 4.263905 ACAAAGGCTGTGAATAGAATCCCA 60.264 41.667 12.68 0.00 36.69 4.37
2635 2749 4.803329 AAGGCTGTGAATAGAATCCCAT 57.197 40.909 0.00 0.00 0.00 4.00
2636 2750 4.363991 AGGCTGTGAATAGAATCCCATC 57.636 45.455 0.00 0.00 0.00 3.51
2637 2751 3.073650 AGGCTGTGAATAGAATCCCATCC 59.926 47.826 0.00 0.00 0.00 3.51
2638 2752 3.416156 GCTGTGAATAGAATCCCATCCC 58.584 50.000 0.00 0.00 0.00 3.85
2639 2753 3.073650 GCTGTGAATAGAATCCCATCCCT 59.926 47.826 0.00 0.00 0.00 4.20
2640 2754 4.805609 GCTGTGAATAGAATCCCATCCCTC 60.806 50.000 0.00 0.00 0.00 4.30
2641 2755 3.652869 TGTGAATAGAATCCCATCCCTCC 59.347 47.826 0.00 0.00 0.00 4.30
2642 2756 3.009584 GTGAATAGAATCCCATCCCTCCC 59.990 52.174 0.00 0.00 0.00 4.30
2643 2757 3.260205 GAATAGAATCCCATCCCTCCCA 58.740 50.000 0.00 0.00 0.00 4.37
2644 2758 2.908263 TAGAATCCCATCCCTCCCAA 57.092 50.000 0.00 0.00 0.00 4.12
2645 2759 2.235530 AGAATCCCATCCCTCCCAAT 57.764 50.000 0.00 0.00 0.00 3.16
2646 2760 2.068977 AGAATCCCATCCCTCCCAATC 58.931 52.381 0.00 0.00 0.00 2.67
2647 2761 1.782752 GAATCCCATCCCTCCCAATCA 59.217 52.381 0.00 0.00 0.00 2.57
2648 2762 1.453633 ATCCCATCCCTCCCAATCAG 58.546 55.000 0.00 0.00 0.00 2.90
2649 2763 0.046242 TCCCATCCCTCCCAATCAGT 59.954 55.000 0.00 0.00 0.00 3.41
2650 2764 0.475906 CCCATCCCTCCCAATCAGTC 59.524 60.000 0.00 0.00 0.00 3.51
2651 2765 0.475906 CCATCCCTCCCAATCAGTCC 59.524 60.000 0.00 0.00 0.00 3.85
2652 2766 1.216064 CATCCCTCCCAATCAGTCCA 58.784 55.000 0.00 0.00 0.00 4.02
2653 2767 1.142465 CATCCCTCCCAATCAGTCCAG 59.858 57.143 0.00 0.00 0.00 3.86
2654 2768 1.225704 CCCTCCCAATCAGTCCAGC 59.774 63.158 0.00 0.00 0.00 4.85
2655 2769 1.225704 CCTCCCAATCAGTCCAGCC 59.774 63.158 0.00 0.00 0.00 4.85
2656 2770 1.565390 CCTCCCAATCAGTCCAGCCA 61.565 60.000 0.00 0.00 0.00 4.75
2657 2771 0.393537 CTCCCAATCAGTCCAGCCAC 60.394 60.000 0.00 0.00 0.00 5.01
2658 2772 0.842030 TCCCAATCAGTCCAGCCACT 60.842 55.000 0.00 0.00 0.00 4.00
2659 2773 0.393537 CCCAATCAGTCCAGCCACTC 60.394 60.000 0.00 0.00 0.00 3.51
2660 2774 0.393537 CCAATCAGTCCAGCCACTCC 60.394 60.000 0.00 0.00 0.00 3.85
2661 2775 0.393537 CAATCAGTCCAGCCACTCCC 60.394 60.000 0.00 0.00 0.00 4.30
2662 2776 1.566298 AATCAGTCCAGCCACTCCCC 61.566 60.000 0.00 0.00 0.00 4.81
2663 2777 2.483329 ATCAGTCCAGCCACTCCCCT 62.483 60.000 0.00 0.00 0.00 4.79
2664 2778 1.306141 CAGTCCAGCCACTCCCCTA 60.306 63.158 0.00 0.00 0.00 3.53
2665 2779 0.692419 CAGTCCAGCCACTCCCCTAT 60.692 60.000 0.00 0.00 0.00 2.57
2666 2780 0.044855 AGTCCAGCCACTCCCCTATT 59.955 55.000 0.00 0.00 0.00 1.73
2667 2781 0.919710 GTCCAGCCACTCCCCTATTT 59.080 55.000 0.00 0.00 0.00 1.40
2668 2782 2.124411 GTCCAGCCACTCCCCTATTTA 58.876 52.381 0.00 0.00 0.00 1.40
2669 2783 2.124411 TCCAGCCACTCCCCTATTTAC 58.876 52.381 0.00 0.00 0.00 2.01
2670 2784 1.143073 CCAGCCACTCCCCTATTTACC 59.857 57.143 0.00 0.00 0.00 2.85
2671 2785 1.143073 CAGCCACTCCCCTATTTACCC 59.857 57.143 0.00 0.00 0.00 3.69
2672 2786 1.010917 AGCCACTCCCCTATTTACCCT 59.989 52.381 0.00 0.00 0.00 4.34
2673 2787 2.251872 AGCCACTCCCCTATTTACCCTA 59.748 50.000 0.00 0.00 0.00 3.53
2674 2788 3.050835 GCCACTCCCCTATTTACCCTAA 58.949 50.000 0.00 0.00 0.00 2.69
2675 2789 3.072622 GCCACTCCCCTATTTACCCTAAG 59.927 52.174 0.00 0.00 0.00 2.18
2676 2790 3.072622 CCACTCCCCTATTTACCCTAAGC 59.927 52.174 0.00 0.00 0.00 3.09
2677 2791 3.072622 CACTCCCCTATTTACCCTAAGCC 59.927 52.174 0.00 0.00 0.00 4.35
2678 2792 2.302157 CTCCCCTATTTACCCTAAGCCG 59.698 54.545 0.00 0.00 0.00 5.52
2679 2793 1.271217 CCCCTATTTACCCTAAGCCGC 60.271 57.143 0.00 0.00 0.00 6.53
2680 2794 1.271217 CCCTATTTACCCTAAGCCGCC 60.271 57.143 0.00 0.00 0.00 6.13
2681 2795 1.418637 CCTATTTACCCTAAGCCGCCA 59.581 52.381 0.00 0.00 0.00 5.69
2682 2796 2.490991 CTATTTACCCTAAGCCGCCAC 58.509 52.381 0.00 0.00 0.00 5.01
2683 2797 0.106868 ATTTACCCTAAGCCGCCACC 60.107 55.000 0.00 0.00 0.00 4.61
2684 2798 2.200923 TTTACCCTAAGCCGCCACCC 62.201 60.000 0.00 0.00 0.00 4.61
2685 2799 3.629035 TACCCTAAGCCGCCACCCT 62.629 63.158 0.00 0.00 0.00 4.34
2686 2800 2.241043 TACCCTAAGCCGCCACCCTA 62.241 60.000 0.00 0.00 0.00 3.53
2687 2801 2.504519 CCTAAGCCGCCACCCTAC 59.495 66.667 0.00 0.00 0.00 3.18
2688 2802 2.064581 CCTAAGCCGCCACCCTACT 61.065 63.158 0.00 0.00 0.00 2.57
2689 2803 1.144057 CTAAGCCGCCACCCTACTG 59.856 63.158 0.00 0.00 0.00 2.74
2690 2804 1.611261 TAAGCCGCCACCCTACTGT 60.611 57.895 0.00 0.00 0.00 3.55
2691 2805 1.895020 TAAGCCGCCACCCTACTGTG 61.895 60.000 0.00 0.00 35.98 3.66
2693 2807 4.015406 CCGCCACCCTACTGTGCA 62.015 66.667 0.00 0.00 34.85 4.57
2694 2808 2.031919 CGCCACCCTACTGTGCAA 59.968 61.111 0.00 0.00 34.85 4.08
2695 2809 1.599518 CGCCACCCTACTGTGCAAA 60.600 57.895 0.00 0.00 34.85 3.68
2696 2810 1.577328 CGCCACCCTACTGTGCAAAG 61.577 60.000 1.09 1.09 34.85 2.77
2697 2811 1.866853 GCCACCCTACTGTGCAAAGC 61.867 60.000 2.98 0.00 34.85 3.51
2698 2812 1.244019 CCACCCTACTGTGCAAAGCC 61.244 60.000 2.98 0.00 34.85 4.35
2699 2813 1.074951 ACCCTACTGTGCAAAGCCC 59.925 57.895 2.98 0.00 0.00 5.19
2700 2814 1.380302 CCCTACTGTGCAAAGCCCT 59.620 57.895 2.98 0.00 0.00 5.19
2701 2815 0.618458 CCCTACTGTGCAAAGCCCTA 59.382 55.000 2.98 0.00 0.00 3.53
2702 2816 1.407437 CCCTACTGTGCAAAGCCCTAG 60.407 57.143 2.98 0.00 0.00 3.02
2703 2817 1.279271 CCTACTGTGCAAAGCCCTAGT 59.721 52.381 2.98 0.00 0.00 2.57
2704 2818 2.500098 CCTACTGTGCAAAGCCCTAGTA 59.500 50.000 2.98 0.00 0.00 1.82
2705 2819 2.770164 ACTGTGCAAAGCCCTAGTAG 57.230 50.000 2.98 0.00 0.00 2.57
2706 2820 1.279271 ACTGTGCAAAGCCCTAGTAGG 59.721 52.381 9.48 9.48 34.30 3.18
2707 2821 1.555075 CTGTGCAAAGCCCTAGTAGGA 59.445 52.381 18.43 0.00 37.67 2.94
2708 2822 2.171448 CTGTGCAAAGCCCTAGTAGGAT 59.829 50.000 18.43 2.84 37.67 3.24
2709 2823 2.092968 TGTGCAAAGCCCTAGTAGGATG 60.093 50.000 18.43 11.40 37.67 3.51
2710 2824 1.490490 TGCAAAGCCCTAGTAGGATGG 59.510 52.381 18.43 2.08 37.67 3.51
2711 2825 1.768870 GCAAAGCCCTAGTAGGATGGA 59.231 52.381 18.43 0.00 37.67 3.41
2712 2826 2.373502 GCAAAGCCCTAGTAGGATGGAT 59.626 50.000 18.43 0.00 37.67 3.41
2713 2827 3.558109 GCAAAGCCCTAGTAGGATGGATC 60.558 52.174 18.43 0.00 37.67 3.36
2722 2836 2.356793 GGATGGATCCAGCGCTCG 60.357 66.667 23.14 0.00 46.38 5.03
2723 2837 2.356793 GATGGATCCAGCGCTCGG 60.357 66.667 21.33 13.56 0.00 4.63
2724 2838 3.157217 GATGGATCCAGCGCTCGGT 62.157 63.158 21.33 6.64 0.00 4.69
2725 2839 3.451556 ATGGATCCAGCGCTCGGTG 62.452 63.158 21.33 13.75 42.60 4.94
2726 2840 4.148825 GGATCCAGCGCTCGGTGT 62.149 66.667 20.54 13.18 41.52 4.16
2727 2841 2.887568 GATCCAGCGCTCGGTGTG 60.888 66.667 20.54 10.90 41.52 3.82
2734 2848 2.480555 CGCTCGGTGTGCAAATCC 59.519 61.111 0.00 0.00 0.00 3.01
2735 2849 2.877691 GCTCGGTGTGCAAATCCC 59.122 61.111 0.00 0.00 0.00 3.85
2736 2850 1.675641 GCTCGGTGTGCAAATCCCT 60.676 57.895 0.00 0.00 0.00 4.20
2737 2851 0.392461 GCTCGGTGTGCAAATCCCTA 60.392 55.000 0.00 0.00 0.00 3.53
2738 2852 1.656652 CTCGGTGTGCAAATCCCTAG 58.343 55.000 0.00 0.00 0.00 3.02
2739 2853 0.981183 TCGGTGTGCAAATCCCTAGT 59.019 50.000 0.00 0.00 0.00 2.57
2740 2854 2.167693 CTCGGTGTGCAAATCCCTAGTA 59.832 50.000 0.00 0.00 0.00 1.82
2741 2855 2.167693 TCGGTGTGCAAATCCCTAGTAG 59.832 50.000 0.00 0.00 0.00 2.57
2742 2856 2.741878 CGGTGTGCAAATCCCTAGTAGG 60.742 54.545 9.48 9.48 34.30 3.18
2743 2857 2.504175 GGTGTGCAAATCCCTAGTAGGA 59.496 50.000 18.43 4.36 37.67 2.94
2745 2859 4.347000 GGTGTGCAAATCCCTAGTAGGATA 59.653 45.833 18.43 5.74 46.31 2.59
2746 2860 5.511545 GGTGTGCAAATCCCTAGTAGGATAG 60.512 48.000 18.43 1.00 46.31 2.08
2747 2861 5.304614 GTGTGCAAATCCCTAGTAGGATAGA 59.695 44.000 18.43 6.93 46.31 1.98
2748 2862 6.014156 GTGTGCAAATCCCTAGTAGGATAGAT 60.014 42.308 18.43 9.01 46.31 1.98
2749 2863 6.211584 TGTGCAAATCCCTAGTAGGATAGATC 59.788 42.308 18.43 3.51 46.31 2.75
2750 2864 5.721960 TGCAAATCCCTAGTAGGATAGATCC 59.278 44.000 18.43 0.00 46.31 3.36
2751 2865 5.721960 GCAAATCCCTAGTAGGATAGATCCA 59.278 44.000 18.43 0.00 46.31 3.41
2752 2866 6.127196 GCAAATCCCTAGTAGGATAGATCCAG 60.127 46.154 18.43 6.77 46.31 3.86
2753 2867 6.098716 AATCCCTAGTAGGATAGATCCAGG 57.901 45.833 18.43 8.22 46.31 4.45
2759 2873 2.281830 GGATAGATCCAGGGCTCGG 58.718 63.158 3.54 0.00 46.38 4.63
2760 2874 0.543174 GGATAGATCCAGGGCTCGGT 60.543 60.000 3.54 0.00 46.38 4.69
2761 2875 0.605589 GATAGATCCAGGGCTCGGTG 59.394 60.000 0.00 0.00 0.00 4.94
2762 2876 0.188587 ATAGATCCAGGGCTCGGTGA 59.811 55.000 0.00 0.00 0.00 4.02
2763 2877 0.468214 TAGATCCAGGGCTCGGTGAG 60.468 60.000 0.00 0.00 0.00 3.51
2772 2886 2.487428 CTCGGTGAGCTGACGGAG 59.513 66.667 22.53 22.53 37.08 4.63
2773 2887 3.057547 CTCGGTGAGCTGACGGAGG 62.058 68.421 26.24 12.42 38.82 4.30
2774 2888 3.062466 CGGTGAGCTGACGGAGGA 61.062 66.667 4.87 0.00 0.00 3.71
2775 2889 2.636412 CGGTGAGCTGACGGAGGAA 61.636 63.158 4.87 0.00 0.00 3.36
2776 2890 1.216710 GGTGAGCTGACGGAGGAAG 59.783 63.158 0.00 0.00 0.00 3.46
2777 2891 1.251527 GGTGAGCTGACGGAGGAAGA 61.252 60.000 0.00 0.00 0.00 2.87
2778 2892 0.172352 GTGAGCTGACGGAGGAAGAG 59.828 60.000 0.00 0.00 0.00 2.85
2779 2893 0.038310 TGAGCTGACGGAGGAAGAGA 59.962 55.000 0.00 0.00 0.00 3.10
2780 2894 1.178276 GAGCTGACGGAGGAAGAGAA 58.822 55.000 0.00 0.00 0.00 2.87
2781 2895 1.134175 GAGCTGACGGAGGAAGAGAAG 59.866 57.143 0.00 0.00 0.00 2.85
2782 2896 1.178276 GCTGACGGAGGAAGAGAAGA 58.822 55.000 0.00 0.00 0.00 2.87
2783 2897 1.546476 GCTGACGGAGGAAGAGAAGAA 59.454 52.381 0.00 0.00 0.00 2.52
2784 2898 2.416701 GCTGACGGAGGAAGAGAAGAAG 60.417 54.545 0.00 0.00 0.00 2.85
2785 2899 2.165437 CTGACGGAGGAAGAGAAGAAGG 59.835 54.545 0.00 0.00 0.00 3.46
2786 2900 0.899019 ACGGAGGAAGAGAAGAAGGC 59.101 55.000 0.00 0.00 0.00 4.35
2787 2901 0.179124 CGGAGGAAGAGAAGAAGGCG 60.179 60.000 0.00 0.00 0.00 5.52
2788 2902 0.176910 GGAGGAAGAGAAGAAGGCGG 59.823 60.000 0.00 0.00 0.00 6.13
2789 2903 0.899019 GAGGAAGAGAAGAAGGCGGT 59.101 55.000 0.00 0.00 0.00 5.68
2790 2904 0.610687 AGGAAGAGAAGAAGGCGGTG 59.389 55.000 0.00 0.00 0.00 4.94
2791 2905 0.391793 GGAAGAGAAGAAGGCGGTGG 60.392 60.000 0.00 0.00 0.00 4.61
2792 2906 0.608640 GAAGAGAAGAAGGCGGTGGA 59.391 55.000 0.00 0.00 0.00 4.02
2793 2907 0.610687 AAGAGAAGAAGGCGGTGGAG 59.389 55.000 0.00 0.00 0.00 3.86
2794 2908 1.219393 GAGAAGAAGGCGGTGGAGG 59.781 63.158 0.00 0.00 0.00 4.30
2795 2909 1.536662 AGAAGAAGGCGGTGGAGGT 60.537 57.895 0.00 0.00 0.00 3.85
2796 2910 1.376037 GAAGAAGGCGGTGGAGGTG 60.376 63.158 0.00 0.00 0.00 4.00
2797 2911 1.827399 GAAGAAGGCGGTGGAGGTGA 61.827 60.000 0.00 0.00 0.00 4.02
2798 2912 1.831652 AAGAAGGCGGTGGAGGTGAG 61.832 60.000 0.00 0.00 0.00 3.51
2799 2913 3.316573 GAAGGCGGTGGAGGTGAGG 62.317 68.421 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.521639 CAGCATATAACCCAAGACATGCAT 59.478 41.667 0.00 0.00 40.89 3.96
1 2 3.884693 CAGCATATAACCCAAGACATGCA 59.115 43.478 7.07 0.00 40.89 3.96
28 29 7.867403 CCAACAGCTACTGAACAAAATAATGTT 59.133 33.333 0.78 0.00 45.82 2.71
50 51 5.767816 AAAAGACACATTCCACTACCAAC 57.232 39.130 0.00 0.00 0.00 3.77
141 142 3.000041 GTGATGCCTCGTGTTATCAACA 59.000 45.455 0.00 0.00 39.52 3.33
144 145 3.541996 ATGTGATGCCTCGTGTTATCA 57.458 42.857 0.00 0.00 0.00 2.15
145 146 3.623060 ACAATGTGATGCCTCGTGTTATC 59.377 43.478 0.00 0.00 0.00 1.75
146 147 3.609853 ACAATGTGATGCCTCGTGTTAT 58.390 40.909 0.00 0.00 0.00 1.89
152 153 3.009723 ACCTTAACAATGTGATGCCTCG 58.990 45.455 0.00 0.00 0.00 4.63
153 154 4.737054 CAACCTTAACAATGTGATGCCTC 58.263 43.478 0.00 0.00 0.00 4.70
154 155 3.056607 GCAACCTTAACAATGTGATGCCT 60.057 43.478 0.00 0.00 0.00 4.75
192 194 5.922053 TCTGACCAGATCATTGATGTAAGG 58.078 41.667 3.32 1.44 36.48 2.69
202 204 2.770232 TGACAGCATCTGACCAGATCAT 59.230 45.455 9.40 0.00 45.78 2.45
222 224 5.032220 CCGATGACAATTCATGAATGTGTG 58.968 41.667 26.68 21.26 42.95 3.82
230 232 3.486375 GCACAGACCGATGACAATTCATG 60.486 47.826 0.00 0.00 42.95 3.07
235 237 2.079158 CTTGCACAGACCGATGACAAT 58.921 47.619 0.00 0.00 0.00 2.71
237 239 0.392706 ACTTGCACAGACCGATGACA 59.607 50.000 0.00 0.00 0.00 3.58
238 240 0.792640 CACTTGCACAGACCGATGAC 59.207 55.000 0.00 0.00 0.00 3.06
243 245 1.577468 TGTAACACTTGCACAGACCG 58.423 50.000 0.00 0.00 0.00 4.79
244 246 2.484264 GGATGTAACACTTGCACAGACC 59.516 50.000 0.00 0.00 0.00 3.85
245 247 2.484264 GGGATGTAACACTTGCACAGAC 59.516 50.000 0.00 0.00 0.00 3.51
246 248 2.371841 AGGGATGTAACACTTGCACAGA 59.628 45.455 0.00 0.00 0.00 3.41
247 249 2.783135 AGGGATGTAACACTTGCACAG 58.217 47.619 0.00 0.00 0.00 3.66
248 250 2.949177 AGGGATGTAACACTTGCACA 57.051 45.000 0.00 0.00 0.00 4.57
253 255 5.768164 CCACAGTTTTAGGGATGTAACACTT 59.232 40.000 0.00 0.00 0.00 3.16
254 256 5.163131 ACCACAGTTTTAGGGATGTAACACT 60.163 40.000 0.00 0.00 0.00 3.55
255 257 5.067954 ACCACAGTTTTAGGGATGTAACAC 58.932 41.667 0.00 0.00 0.00 3.32
256 258 5.313280 ACCACAGTTTTAGGGATGTAACA 57.687 39.130 0.00 0.00 0.00 2.41
257 259 7.933215 ATAACCACAGTTTTAGGGATGTAAC 57.067 36.000 0.00 0.00 37.42 2.50
258 260 8.943594 AAATAACCACAGTTTTAGGGATGTAA 57.056 30.769 0.00 0.00 37.42 2.41
259 261 7.612633 GGAAATAACCACAGTTTTAGGGATGTA 59.387 37.037 0.00 0.00 37.42 2.29
260 262 6.436218 GGAAATAACCACAGTTTTAGGGATGT 59.564 38.462 0.00 0.00 37.42 3.06
261 263 6.435904 TGGAAATAACCACAGTTTTAGGGATG 59.564 38.462 0.00 0.00 37.42 3.51
262 264 6.557568 TGGAAATAACCACAGTTTTAGGGAT 58.442 36.000 0.00 0.00 37.42 3.85
263 265 5.954757 TGGAAATAACCACAGTTTTAGGGA 58.045 37.500 0.00 0.00 37.42 4.20
264 266 6.850752 ATGGAAATAACCACAGTTTTAGGG 57.149 37.500 0.00 0.00 43.03 3.53
265 267 7.666623 ACAATGGAAATAACCACAGTTTTAGG 58.333 34.615 0.00 0.00 43.03 2.69
266 268 9.840427 CTACAATGGAAATAACCACAGTTTTAG 57.160 33.333 0.00 0.00 43.03 1.85
267 269 8.301002 GCTACAATGGAAATAACCACAGTTTTA 58.699 33.333 0.00 0.00 43.03 1.52
268 270 7.015195 AGCTACAATGGAAATAACCACAGTTTT 59.985 33.333 0.00 0.00 43.03 2.43
269 271 6.493458 AGCTACAATGGAAATAACCACAGTTT 59.507 34.615 0.00 0.00 43.03 2.66
270 272 6.010219 AGCTACAATGGAAATAACCACAGTT 58.990 36.000 0.00 0.00 43.03 3.16
271 273 5.570320 AGCTACAATGGAAATAACCACAGT 58.430 37.500 0.00 0.00 43.03 3.55
289 291 8.441608 CACAGAGCAATGATATTCAATAGCTAC 58.558 37.037 0.00 0.00 33.89 3.58
309 312 3.665409 CGCAAAATAACACTTGCACAGAG 59.335 43.478 7.48 0.00 46.66 3.35
329 332 1.741401 TACCAGCACTGCACATCGC 60.741 57.895 3.30 0.00 42.89 4.58
330 333 0.390340 AGTACCAGCACTGCACATCG 60.390 55.000 3.30 0.00 0.00 3.84
331 334 1.734465 GAAGTACCAGCACTGCACATC 59.266 52.381 3.30 0.00 0.00 3.06
332 335 1.072173 TGAAGTACCAGCACTGCACAT 59.928 47.619 3.30 0.00 28.52 3.21
338 341 4.683832 GACGATAATGAAGTACCAGCACT 58.316 43.478 0.00 0.00 0.00 4.40
348 351 2.661675 CGGGTATGCGACGATAATGAAG 59.338 50.000 0.00 0.00 0.00 3.02
410 413 2.679837 CACATTCCCAGAAATCACTCCG 59.320 50.000 0.00 0.00 0.00 4.63
524 527 4.389992 TGACTCAGCGAAACATGAAGATTC 59.610 41.667 0.00 0.00 0.00 2.52
525 528 4.318332 TGACTCAGCGAAACATGAAGATT 58.682 39.130 0.00 0.00 0.00 2.40
566 570 5.645067 AGAATTGTTTCTCTGCGATTGATCA 59.355 36.000 0.00 0.00 37.69 2.92
572 576 5.471456 AGTTTCAGAATTGTTTCTCTGCGAT 59.529 36.000 0.00 0.00 40.28 4.58
614 621 5.235831 GGCTATCGAATAAACCCAAGTACAC 59.764 44.000 0.00 0.00 0.00 2.90
615 622 5.129815 AGGCTATCGAATAAACCCAAGTACA 59.870 40.000 0.00 0.00 0.00 2.90
616 623 5.608449 AGGCTATCGAATAAACCCAAGTAC 58.392 41.667 0.00 0.00 0.00 2.73
617 624 5.850614 GAGGCTATCGAATAAACCCAAGTA 58.149 41.667 0.00 0.00 0.00 2.24
618 625 4.704965 GAGGCTATCGAATAAACCCAAGT 58.295 43.478 0.00 0.00 0.00 3.16
673 680 3.697619 ACCTTCCAGTACCAAAGCTAC 57.302 47.619 0.00 0.00 0.00 3.58
676 683 4.216411 TGATACCTTCCAGTACCAAAGC 57.784 45.455 0.00 0.00 0.00 3.51
697 704 8.397906 CGAATTCATTCTGTACATGGTACAAAT 58.602 33.333 6.22 9.60 36.84 2.32
731 738 7.537596 ACAAAAGTATGACCAAAATGATGGA 57.462 32.000 4.13 0.00 43.54 3.41
735 742 9.829507 ATTCAAACAAAAGTATGACCAAAATGA 57.170 25.926 0.00 0.00 0.00 2.57
740 747 8.474025 ACTGAATTCAAACAAAAGTATGACCAA 58.526 29.630 9.88 0.00 0.00 3.67
793 800 3.642377 GGGGTTTGTACCTTGCCTAAAAA 59.358 43.478 0.00 0.00 44.38 1.94
794 801 3.232662 GGGGTTTGTACCTTGCCTAAAA 58.767 45.455 0.00 0.00 44.38 1.52
795 802 2.177233 TGGGGTTTGTACCTTGCCTAAA 59.823 45.455 0.00 0.00 44.38 1.85
796 803 1.781529 TGGGGTTTGTACCTTGCCTAA 59.218 47.619 0.00 0.00 44.38 2.69
797 804 1.353022 CTGGGGTTTGTACCTTGCCTA 59.647 52.381 0.00 0.00 44.38 3.93
798 805 0.112412 CTGGGGTTTGTACCTTGCCT 59.888 55.000 0.00 0.00 44.38 4.75
799 806 1.532604 GCTGGGGTTTGTACCTTGCC 61.533 60.000 0.00 0.00 44.38 4.52
800 807 0.539669 AGCTGGGGTTTGTACCTTGC 60.540 55.000 0.00 0.00 44.38 4.01
801 808 1.247567 CAGCTGGGGTTTGTACCTTG 58.752 55.000 5.57 0.00 44.38 3.61
802 809 0.539669 GCAGCTGGGGTTTGTACCTT 60.540 55.000 17.12 0.00 44.38 3.50
803 810 1.074951 GCAGCTGGGGTTTGTACCT 59.925 57.895 17.12 0.00 44.38 3.08
804 811 1.977009 GGCAGCTGGGGTTTGTACC 60.977 63.158 17.12 0.12 44.22 3.34
805 812 0.326927 TAGGCAGCTGGGGTTTGTAC 59.673 55.000 17.12 0.00 0.00 2.90
806 813 0.618458 CTAGGCAGCTGGGGTTTGTA 59.382 55.000 17.12 0.00 0.00 2.41
807 814 1.380302 CTAGGCAGCTGGGGTTTGT 59.620 57.895 17.12 0.00 0.00 2.83
808 815 2.048603 GCTAGGCAGCTGGGGTTTG 61.049 63.158 17.12 0.00 44.93 2.93
809 816 2.356667 GCTAGGCAGCTGGGGTTT 59.643 61.111 17.12 0.00 44.93 3.27
810 817 4.101448 CGCTAGGCAGCTGGGGTT 62.101 66.667 17.12 0.00 46.26 4.11
812 819 4.537433 GACGCTAGGCAGCTGGGG 62.537 72.222 17.12 9.46 46.26 4.96
813 820 4.880537 CGACGCTAGGCAGCTGGG 62.881 72.222 17.12 0.00 46.26 4.45
818 825 2.434185 TTTGGCGACGCTAGGCAG 60.434 61.111 20.77 0.00 44.87 4.85
819 826 2.740826 GTTTGGCGACGCTAGGCA 60.741 61.111 20.77 6.07 42.55 4.75
820 827 3.497031 GGTTTGGCGACGCTAGGC 61.497 66.667 20.77 9.93 0.00 3.93
821 828 1.375523 AAGGTTTGGCGACGCTAGG 60.376 57.895 20.77 0.00 0.00 3.02
825 832 2.251371 GACAAGGTTTGGCGACGC 59.749 61.111 12.43 12.43 34.12 5.19
826 833 1.157870 ACTGACAAGGTTTGGCGACG 61.158 55.000 0.00 0.00 43.38 5.12
839 846 1.891919 GGCCGAACAAGCACTGACA 60.892 57.895 0.00 0.00 0.00 3.58
869 877 1.328279 ACTTGCCAAGTAAAGCCCAC 58.672 50.000 8.67 0.00 40.69 4.61
880 888 1.524482 GGGCCACAAAACTTGCCAA 59.476 52.632 4.39 0.00 45.83 4.52
885 894 2.351706 TTCTACGGGCCACAAAACTT 57.648 45.000 4.39 0.00 0.00 2.66
887 896 1.268625 CCTTTCTACGGGCCACAAAAC 59.731 52.381 4.39 0.00 0.00 2.43
891 900 1.550130 CCTCCTTTCTACGGGCCACA 61.550 60.000 4.39 0.00 0.00 4.17
899 908 3.075148 GACAACAAGCCCTCCTTTCTAC 58.925 50.000 0.00 0.00 0.00 2.59
900 909 2.708861 TGACAACAAGCCCTCCTTTCTA 59.291 45.455 0.00 0.00 0.00 2.10
940 949 1.272490 CGAAACAGGCAGTCCAGACTA 59.728 52.381 0.00 0.00 40.20 2.59
946 955 1.464997 CTAAAGCGAAACAGGCAGTCC 59.535 52.381 0.00 0.00 0.00 3.85
994 1003 0.693049 GGAATCCCTACCATGGCGAT 59.307 55.000 13.04 5.01 0.00 4.58
1020 1029 0.533085 GGGCGCTAGGGATTGAGAAC 60.533 60.000 11.61 0.00 0.00 3.01
1141 1150 4.947147 TTTCTTGCTGGCGGCGGT 62.947 61.111 20.06 0.00 45.43 5.68
1201 1243 4.426112 GGCTTTCTTGGCGGCAGC 62.426 66.667 12.87 11.86 44.18 5.25
1227 1269 2.985847 ACTGCTTTCTTGCCGGCC 60.986 61.111 26.77 6.84 0.00 6.13
1284 1326 3.443925 GCTCCTTTCTTGCCGGCC 61.444 66.667 26.77 6.44 0.00 6.13
1308 1350 2.690778 CCAGTACTTGCTTGCGGCC 61.691 63.158 0.00 0.00 40.92 6.13
1651 1693 2.131023 GAAGTCCTTCATCCCCTCCAT 58.869 52.381 2.19 0.00 39.31 3.41
1728 1770 2.109834 ACCACCCATCTCACAAATCCAA 59.890 45.455 0.00 0.00 0.00 3.53
1746 1788 3.555324 TCCTGCACGAAGCCACCA 61.555 61.111 0.00 0.00 44.83 4.17
1764 1806 1.612442 TTCTTCTCCCACCTCCCCG 60.612 63.158 0.00 0.00 0.00 5.73
1782 1824 4.880696 GCATATCAAGCCTCTGTTTCTTCT 59.119 41.667 0.00 0.00 0.00 2.85
1783 1825 4.880696 AGCATATCAAGCCTCTGTTTCTTC 59.119 41.667 0.00 0.00 0.00 2.87
1784 1826 4.853007 AGCATATCAAGCCTCTGTTTCTT 58.147 39.130 0.00 0.00 0.00 2.52
1785 1827 4.163839 AGAGCATATCAAGCCTCTGTTTCT 59.836 41.667 0.00 0.00 0.00 2.52
1789 1831 3.036819 TCAGAGCATATCAAGCCTCTGT 58.963 45.455 14.06 0.00 37.91 3.41
1796 1838 5.754406 CCTTCAGAGTTCAGAGCATATCAAG 59.246 44.000 0.00 0.00 0.00 3.02
1857 1899 2.124570 CCACAGATTGCTCCGGGG 60.125 66.667 0.00 0.00 0.00 5.73
1872 1914 3.423539 AGTGCAGAGTCAAATTAGCCA 57.576 42.857 0.00 0.00 0.00 4.75
1874 1916 4.214119 TGTGAAGTGCAGAGTCAAATTAGC 59.786 41.667 0.00 0.00 0.00 3.09
1883 1925 3.406764 GGAGAAATGTGAAGTGCAGAGT 58.593 45.455 0.00 0.00 0.00 3.24
1884 1926 2.746362 GGGAGAAATGTGAAGTGCAGAG 59.254 50.000 0.00 0.00 0.00 3.35
1896 1938 5.104374 CGGACAATTTTCATGGGAGAAATG 58.896 41.667 0.00 0.00 37.35 2.32
1901 1943 2.094675 AGCGGACAATTTTCATGGGAG 58.905 47.619 0.00 0.00 0.00 4.30
1904 1946 5.505173 AGATTAGCGGACAATTTTCATGG 57.495 39.130 0.00 0.00 0.00 3.66
1908 1950 5.938322 TCACAAGATTAGCGGACAATTTTC 58.062 37.500 0.00 0.00 0.00 2.29
1911 1953 5.957842 TTTCACAAGATTAGCGGACAATT 57.042 34.783 0.00 0.00 0.00 2.32
1961 2004 2.164219 CCACAAAATGATCCTTCCCACG 59.836 50.000 0.00 0.00 0.00 4.94
1977 2020 1.748493 GCAGGTCAAAAGACACCACAA 59.252 47.619 0.00 0.00 34.80 3.33
2002 2045 4.139786 TCCTCAGAAATGCCATCTATTGC 58.860 43.478 0.00 0.00 0.00 3.56
2006 2049 2.773661 TGCTCCTCAGAAATGCCATCTA 59.226 45.455 0.00 0.00 0.00 1.98
2057 2100 1.151668 GATGCAGAGACAGCAAACGT 58.848 50.000 0.00 0.00 46.27 3.99
2065 2165 4.819761 GGCCGCGATGCAGAGACA 62.820 66.667 8.23 0.00 0.00 3.41
2082 2182 4.274459 GCTAGAGAATACACAATTGGCCAG 59.726 45.833 5.11 0.00 0.00 4.85
2090 2190 9.902684 AGTACTTACTAGCTAGAGAATACACAA 57.097 33.333 27.45 5.77 34.13 3.33
2112 2212 8.773404 ACATCAACCAGTGAACTTATAAGTAC 57.227 34.615 18.31 13.48 40.50 2.73
2115 2217 7.530010 CCAACATCAACCAGTGAACTTATAAG 58.470 38.462 11.05 11.05 40.50 1.73
2127 2229 3.389925 AACATTGCCAACATCAACCAG 57.610 42.857 0.00 0.00 0.00 4.00
2146 2248 0.741915 GACCCAACCGTTCTTGCAAA 59.258 50.000 0.00 0.00 0.00 3.68
2176 2278 5.766670 ACATCATATCCATACAGCCACAAAG 59.233 40.000 0.00 0.00 0.00 2.77
2178 2280 5.308976 ACATCATATCCATACAGCCACAA 57.691 39.130 0.00 0.00 0.00 3.33
2197 2299 4.516698 ACTGCTCGAAAATTCAGTGAACAT 59.483 37.500 7.96 0.00 38.25 2.71
2249 2356 5.385198 ACAGGACATCCATAAAACTGTTGT 58.615 37.500 0.00 0.00 38.89 3.32
2301 2411 3.181465 CCTACTTTAGTCACGGCATCCAT 60.181 47.826 0.00 0.00 0.00 3.41
2302 2412 2.167693 CCTACTTTAGTCACGGCATCCA 59.832 50.000 0.00 0.00 0.00 3.41
2303 2413 2.429610 TCCTACTTTAGTCACGGCATCC 59.570 50.000 0.00 0.00 0.00 3.51
2304 2414 3.795623 TCCTACTTTAGTCACGGCATC 57.204 47.619 0.00 0.00 0.00 3.91
2305 2415 3.514309 ACTTCCTACTTTAGTCACGGCAT 59.486 43.478 0.00 0.00 0.00 4.40
2306 2416 2.895404 ACTTCCTACTTTAGTCACGGCA 59.105 45.455 0.00 0.00 0.00 5.69
2307 2417 3.251571 CACTTCCTACTTTAGTCACGGC 58.748 50.000 0.00 0.00 0.00 5.68
2309 2419 7.088905 ACAATACACTTCCTACTTTAGTCACG 58.911 38.462 0.00 0.00 0.00 4.35
2310 2420 9.570488 CTACAATACACTTCCTACTTTAGTCAC 57.430 37.037 0.00 0.00 0.00 3.67
2311 2421 8.248945 GCTACAATACACTTCCTACTTTAGTCA 58.751 37.037 0.00 0.00 0.00 3.41
2313 2423 8.251721 CAGCTACAATACACTTCCTACTTTAGT 58.748 37.037 0.00 0.00 0.00 2.24
2314 2424 8.251721 ACAGCTACAATACACTTCCTACTTTAG 58.748 37.037 0.00 0.00 0.00 1.85
2316 2426 6.874134 CACAGCTACAATACACTTCCTACTTT 59.126 38.462 0.00 0.00 0.00 2.66
2318 2428 5.480772 ACACAGCTACAATACACTTCCTACT 59.519 40.000 0.00 0.00 0.00 2.57
2319 2429 5.721232 ACACAGCTACAATACACTTCCTAC 58.279 41.667 0.00 0.00 0.00 3.18
2320 2430 5.995565 ACACAGCTACAATACACTTCCTA 57.004 39.130 0.00 0.00 0.00 2.94
2321 2431 4.891992 ACACAGCTACAATACACTTCCT 57.108 40.909 0.00 0.00 0.00 3.36
2322 2432 5.347907 GTGTACACAGCTACAATACACTTCC 59.652 44.000 21.14 0.00 41.46 3.46
2323 2433 5.060569 CGTGTACACAGCTACAATACACTTC 59.939 44.000 24.98 0.00 42.15 3.01
2324 2434 4.921515 CGTGTACACAGCTACAATACACTT 59.078 41.667 24.98 0.00 42.15 3.16
2325 2435 4.482386 CGTGTACACAGCTACAATACACT 58.518 43.478 24.98 0.00 42.15 3.55
2326 2436 3.060363 GCGTGTACACAGCTACAATACAC 59.940 47.826 24.98 14.95 41.33 2.90
2327 2437 3.057104 AGCGTGTACACAGCTACAATACA 60.057 43.478 30.46 0.00 38.61 2.29
2328 2438 3.303495 CAGCGTGTACACAGCTACAATAC 59.697 47.826 30.74 10.46 38.44 1.89
2329 2439 3.057104 ACAGCGTGTACACAGCTACAATA 60.057 43.478 30.74 0.00 38.44 1.90
2330 2440 2.288825 ACAGCGTGTACACAGCTACAAT 60.289 45.455 30.74 19.74 38.44 2.71
2331 2441 1.067974 ACAGCGTGTACACAGCTACAA 59.932 47.619 30.74 0.00 38.44 2.41
2332 2442 0.671796 ACAGCGTGTACACAGCTACA 59.328 50.000 30.74 0.00 38.44 2.74
2333 2443 1.779569 AACAGCGTGTACACAGCTAC 58.220 50.000 30.74 15.05 38.44 3.58
2334 2444 2.223852 TGAAACAGCGTGTACACAGCTA 60.224 45.455 30.74 19.45 38.44 3.32
2335 2445 1.217882 GAAACAGCGTGTACACAGCT 58.782 50.000 27.95 27.95 40.07 4.24
2336 2446 0.934496 TGAAACAGCGTGTACACAGC 59.066 50.000 24.98 25.18 0.00 4.40
2337 2447 2.596575 CGTTGAAACAGCGTGTACACAG 60.597 50.000 24.98 17.78 33.66 3.66
2338 2448 1.325037 CGTTGAAACAGCGTGTACACA 59.675 47.619 24.98 0.49 33.66 3.72
2339 2449 1.332552 CCGTTGAAACAGCGTGTACAC 60.333 52.381 16.32 16.32 36.40 2.90
2340 2450 0.931702 CCGTTGAAACAGCGTGTACA 59.068 50.000 0.00 0.00 36.40 2.90
2341 2451 1.071041 GTCCGTTGAAACAGCGTGTAC 60.071 52.381 7.15 0.00 36.40 2.90
2342 2452 1.210870 GTCCGTTGAAACAGCGTGTA 58.789 50.000 7.15 0.00 36.40 2.90
2343 2453 1.433837 GGTCCGTTGAAACAGCGTGT 61.434 55.000 7.15 0.00 36.40 4.49
2344 2454 1.278637 GGTCCGTTGAAACAGCGTG 59.721 57.895 7.15 0.35 36.40 5.34
2345 2455 1.890510 GGGTCCGTTGAAACAGCGT 60.891 57.895 7.15 0.00 36.40 5.07
2346 2456 2.613506 GGGGTCCGTTGAAACAGCG 61.614 63.158 0.00 0.00 37.79 5.18
2347 2457 0.822121 AAGGGGTCCGTTGAAACAGC 60.822 55.000 0.00 0.00 0.00 4.40
2348 2458 1.336755 CAAAGGGGTCCGTTGAAACAG 59.663 52.381 6.75 0.00 43.74 3.16
2349 2459 1.394618 CAAAGGGGTCCGTTGAAACA 58.605 50.000 6.75 0.00 43.74 2.83
2350 2460 0.031585 GCAAAGGGGTCCGTTGAAAC 59.968 55.000 14.89 0.00 43.74 2.78
2351 2461 0.395862 TGCAAAGGGGTCCGTTGAAA 60.396 50.000 14.89 1.76 43.74 2.69
2352 2462 0.395862 TTGCAAAGGGGTCCGTTGAA 60.396 50.000 14.89 3.32 43.74 2.69
2353 2463 1.104577 GTTGCAAAGGGGTCCGTTGA 61.105 55.000 14.89 0.43 43.74 3.18
2354 2464 1.362355 GTTGCAAAGGGGTCCGTTG 59.638 57.895 0.00 7.98 43.83 4.10
2355 2465 1.830847 GGTTGCAAAGGGGTCCGTT 60.831 57.895 0.00 0.00 0.00 4.44
2356 2466 2.203437 GGTTGCAAAGGGGTCCGT 60.203 61.111 0.00 0.00 0.00 4.69
2357 2467 1.595093 GATGGTTGCAAAGGGGTCCG 61.595 60.000 0.00 0.00 0.00 4.79
2358 2468 1.595093 CGATGGTTGCAAAGGGGTCC 61.595 60.000 0.00 0.00 0.00 4.46
2359 2469 0.608035 TCGATGGTTGCAAAGGGGTC 60.608 55.000 0.00 0.00 0.00 4.46
2360 2470 0.039618 ATCGATGGTTGCAAAGGGGT 59.960 50.000 0.00 0.00 0.00 4.95
2361 2471 0.740737 GATCGATGGTTGCAAAGGGG 59.259 55.000 0.54 0.00 0.00 4.79
2362 2472 1.402968 CTGATCGATGGTTGCAAAGGG 59.597 52.381 0.54 0.00 0.00 3.95
2363 2473 2.086869 ACTGATCGATGGTTGCAAAGG 58.913 47.619 0.54 0.00 0.00 3.11
2364 2474 3.242543 GCTACTGATCGATGGTTGCAAAG 60.243 47.826 20.58 0.00 33.42 2.77
2365 2475 2.677836 GCTACTGATCGATGGTTGCAAA 59.322 45.455 20.58 0.00 33.42 3.68
2366 2476 2.279741 GCTACTGATCGATGGTTGCAA 58.720 47.619 20.58 0.00 33.42 4.08
2367 2477 1.206849 TGCTACTGATCGATGGTTGCA 59.793 47.619 22.69 22.69 38.76 4.08
2368 2478 1.939974 TGCTACTGATCGATGGTTGC 58.060 50.000 19.50 19.50 33.70 4.17
2369 2479 2.728318 CGATGCTACTGATCGATGGTTG 59.272 50.000 0.54 4.01 44.46 3.77
2370 2480 2.864097 GCGATGCTACTGATCGATGGTT 60.864 50.000 0.54 0.00 44.46 3.67
2371 2481 1.336332 GCGATGCTACTGATCGATGGT 60.336 52.381 0.54 4.14 44.46 3.55
2372 2482 1.067985 AGCGATGCTACTGATCGATGG 60.068 52.381 0.54 0.00 44.46 3.51
2373 2483 2.344504 AGCGATGCTACTGATCGATG 57.655 50.000 0.54 0.00 44.46 3.84
2425 2535 9.379791 GCTAGATGATGATGAATGATGATGTTA 57.620 33.333 0.00 0.00 0.00 2.41
2426 2536 8.103935 AGCTAGATGATGATGAATGATGATGTT 58.896 33.333 0.00 0.00 0.00 2.71
2427 2537 7.550906 CAGCTAGATGATGATGAATGATGATGT 59.449 37.037 0.40 0.00 33.12 3.06
2428 2538 7.466590 GCAGCTAGATGATGATGAATGATGATG 60.467 40.741 13.26 0.00 33.12 3.07
2429 2539 6.540551 GCAGCTAGATGATGATGAATGATGAT 59.459 38.462 13.26 0.00 33.12 2.45
2430 2540 5.875359 GCAGCTAGATGATGATGAATGATGA 59.125 40.000 13.26 0.00 33.12 2.92
2431 2541 5.220491 CGCAGCTAGATGATGATGAATGATG 60.220 44.000 13.26 0.00 33.12 3.07
2432 2542 4.870991 CGCAGCTAGATGATGATGAATGAT 59.129 41.667 13.26 0.00 33.12 2.45
2433 2543 4.243270 CGCAGCTAGATGATGATGAATGA 58.757 43.478 13.26 0.00 33.12 2.57
2434 2544 3.995048 ACGCAGCTAGATGATGATGAATG 59.005 43.478 13.26 0.00 33.12 2.67
2435 2545 3.995048 CACGCAGCTAGATGATGATGAAT 59.005 43.478 13.26 0.00 33.12 2.57
2436 2546 3.387397 CACGCAGCTAGATGATGATGAA 58.613 45.455 13.26 0.00 33.12 2.57
2437 2547 2.288640 CCACGCAGCTAGATGATGATGA 60.289 50.000 13.26 0.00 33.12 2.92
2438 2548 2.067013 CCACGCAGCTAGATGATGATG 58.933 52.381 13.26 3.36 33.12 3.07
2439 2549 1.607509 GCCACGCAGCTAGATGATGAT 60.608 52.381 13.26 0.00 33.12 2.45
2440 2550 0.249615 GCCACGCAGCTAGATGATGA 60.250 55.000 13.26 0.00 33.12 2.92
2441 2551 0.249784 AGCCACGCAGCTAGATGATG 60.250 55.000 13.26 8.88 42.70 3.07
2442 2552 0.467384 AAGCCACGCAGCTAGATGAT 59.533 50.000 13.26 0.00 44.11 2.45
2443 2553 0.250234 AAAGCCACGCAGCTAGATGA 59.750 50.000 13.26 0.00 44.11 2.92
2444 2554 1.089920 AAAAGCCACGCAGCTAGATG 58.910 50.000 2.90 2.90 44.11 2.90
2445 2555 2.691409 TAAAAGCCACGCAGCTAGAT 57.309 45.000 0.00 0.00 44.11 1.98
2446 2556 2.691409 ATAAAAGCCACGCAGCTAGA 57.309 45.000 0.00 0.00 44.11 2.43
2447 2557 4.511454 TGAATATAAAAGCCACGCAGCTAG 59.489 41.667 0.00 0.00 44.11 3.42
2448 2558 4.447290 TGAATATAAAAGCCACGCAGCTA 58.553 39.130 0.00 0.00 44.11 3.32
2450 2560 3.691049 TGAATATAAAAGCCACGCAGC 57.309 42.857 0.00 0.00 0.00 5.25
2451 2561 5.422666 TGATGAATATAAAAGCCACGCAG 57.577 39.130 0.00 0.00 0.00 5.18
2452 2562 7.503521 TTATGATGAATATAAAAGCCACGCA 57.496 32.000 0.00 0.00 0.00 5.24
2495 2609 1.194772 GTTGTGTTCTAACTCGCTGGC 59.805 52.381 0.00 0.00 0.00 4.85
2499 2613 2.221055 CCTGTGTTGTGTTCTAACTCGC 59.779 50.000 0.00 0.00 0.00 5.03
2507 2621 2.627945 TCAGACACCTGTGTTGTGTTC 58.372 47.619 4.16 0.00 46.43 3.18
2518 2632 3.134081 CCCGGTTGTTATATCAGACACCT 59.866 47.826 0.00 0.00 0.00 4.00
2519 2633 3.463944 CCCGGTTGTTATATCAGACACC 58.536 50.000 0.00 0.00 0.00 4.16
2549 2663 7.359264 CCGTTGAGCGATTATATTGTAGAAAGG 60.359 40.741 0.00 0.00 44.77 3.11
2558 2672 9.084164 GTTATGTATCCGTTGAGCGATTATATT 57.916 33.333 0.00 0.00 44.77 1.28
2559 2673 7.705325 GGTTATGTATCCGTTGAGCGATTATAT 59.295 37.037 0.00 0.00 44.77 0.86
2560 2674 7.031372 GGTTATGTATCCGTTGAGCGATTATA 58.969 38.462 0.00 0.00 44.77 0.98
2561 2675 5.867716 GGTTATGTATCCGTTGAGCGATTAT 59.132 40.000 0.00 0.00 44.77 1.28
2562 2676 5.221283 TGGTTATGTATCCGTTGAGCGATTA 60.221 40.000 0.00 0.00 44.77 1.75
2563 2677 4.056050 GGTTATGTATCCGTTGAGCGATT 58.944 43.478 0.00 0.00 44.77 3.34
2564 2678 3.069016 TGGTTATGTATCCGTTGAGCGAT 59.931 43.478 0.00 0.00 44.77 4.58
2565 2679 2.427812 TGGTTATGTATCCGTTGAGCGA 59.572 45.455 0.00 0.00 44.77 4.93
2566 2680 2.794910 CTGGTTATGTATCCGTTGAGCG 59.205 50.000 0.00 0.00 40.95 5.03
2567 2681 3.793559 ACTGGTTATGTATCCGTTGAGC 58.206 45.455 0.00 0.00 0.00 4.26
2568 2682 5.661458 AGAACTGGTTATGTATCCGTTGAG 58.339 41.667 0.00 0.00 0.00 3.02
2569 2683 5.670792 AGAACTGGTTATGTATCCGTTGA 57.329 39.130 0.00 0.00 0.00 3.18
2570 2684 6.814644 TGTAAGAACTGGTTATGTATCCGTTG 59.185 38.462 0.00 0.00 0.00 4.10
2571 2685 6.938507 TGTAAGAACTGGTTATGTATCCGTT 58.061 36.000 0.00 0.00 0.00 4.44
2572 2686 6.534475 TGTAAGAACTGGTTATGTATCCGT 57.466 37.500 0.00 0.00 0.00 4.69
2573 2687 7.207383 TGATGTAAGAACTGGTTATGTATCCG 58.793 38.462 0.00 0.00 0.00 4.18
2574 2688 8.421784 TCTGATGTAAGAACTGGTTATGTATCC 58.578 37.037 0.00 0.00 0.00 2.59
2575 2689 9.469807 CTCTGATGTAAGAACTGGTTATGTATC 57.530 37.037 0.00 0.00 0.00 2.24
2576 2690 8.982723 ACTCTGATGTAAGAACTGGTTATGTAT 58.017 33.333 0.00 0.00 0.00 2.29
2577 2691 8.251026 CACTCTGATGTAAGAACTGGTTATGTA 58.749 37.037 0.00 0.00 0.00 2.29
2578 2692 7.099764 CACTCTGATGTAAGAACTGGTTATGT 58.900 38.462 0.00 0.00 0.00 2.29
2579 2693 6.036517 GCACTCTGATGTAAGAACTGGTTATG 59.963 42.308 0.00 0.00 0.00 1.90
2580 2694 6.109359 GCACTCTGATGTAAGAACTGGTTAT 58.891 40.000 0.00 0.00 0.00 1.89
2581 2695 5.011635 TGCACTCTGATGTAAGAACTGGTTA 59.988 40.000 0.00 0.00 0.00 2.85
2582 2696 4.202357 TGCACTCTGATGTAAGAACTGGTT 60.202 41.667 0.00 0.00 0.00 3.67
2583 2697 3.324846 TGCACTCTGATGTAAGAACTGGT 59.675 43.478 0.00 0.00 0.00 4.00
2584 2698 3.930336 TGCACTCTGATGTAAGAACTGG 58.070 45.455 0.00 0.00 0.00 4.00
2585 2699 3.370366 GCTGCACTCTGATGTAAGAACTG 59.630 47.826 0.00 0.00 0.00 3.16
2586 2700 3.007290 TGCTGCACTCTGATGTAAGAACT 59.993 43.478 0.00 0.00 0.00 3.01
2587 2701 3.329386 TGCTGCACTCTGATGTAAGAAC 58.671 45.455 0.00 0.00 0.00 3.01
2588 2702 3.683365 TGCTGCACTCTGATGTAAGAA 57.317 42.857 0.00 0.00 0.00 2.52
2589 2703 3.683365 TTGCTGCACTCTGATGTAAGA 57.317 42.857 0.00 0.00 0.00 2.10
2590 2704 4.872124 TGTATTGCTGCACTCTGATGTAAG 59.128 41.667 0.00 0.00 0.00 2.34
2591 2705 4.831107 TGTATTGCTGCACTCTGATGTAA 58.169 39.130 0.00 0.00 0.00 2.41
2592 2706 4.470334 TGTATTGCTGCACTCTGATGTA 57.530 40.909 0.00 0.00 0.00 2.29
2593 2707 3.339253 TGTATTGCTGCACTCTGATGT 57.661 42.857 0.00 0.00 0.00 3.06
2594 2708 4.438336 CCTTTGTATTGCTGCACTCTGATG 60.438 45.833 0.00 0.00 0.00 3.07
2595 2709 3.693085 CCTTTGTATTGCTGCACTCTGAT 59.307 43.478 0.00 0.00 0.00 2.90
2596 2710 3.076621 CCTTTGTATTGCTGCACTCTGA 58.923 45.455 0.00 0.00 0.00 3.27
2597 2711 2.415090 GCCTTTGTATTGCTGCACTCTG 60.415 50.000 0.00 0.00 0.00 3.35
2598 2712 1.815003 GCCTTTGTATTGCTGCACTCT 59.185 47.619 0.00 0.00 0.00 3.24
2599 2713 1.815003 AGCCTTTGTATTGCTGCACTC 59.185 47.619 0.00 0.00 33.23 3.51
2600 2714 1.542915 CAGCCTTTGTATTGCTGCACT 59.457 47.619 0.00 0.00 45.09 4.40
2601 2715 1.986698 CAGCCTTTGTATTGCTGCAC 58.013 50.000 0.00 0.00 45.09 4.57
2605 2719 5.500234 TCTATTCACAGCCTTTGTATTGCT 58.500 37.500 0.00 0.00 38.16 3.91
2606 2720 5.818136 TCTATTCACAGCCTTTGTATTGC 57.182 39.130 0.00 0.00 38.16 3.56
2607 2721 7.420800 GGATTCTATTCACAGCCTTTGTATTG 58.579 38.462 0.00 0.00 38.16 1.90
2608 2722 6.547510 GGGATTCTATTCACAGCCTTTGTATT 59.452 38.462 0.00 0.00 38.16 1.89
2609 2723 6.064717 GGGATTCTATTCACAGCCTTTGTAT 58.935 40.000 0.00 0.00 38.16 2.29
2610 2724 5.045213 TGGGATTCTATTCACAGCCTTTGTA 60.045 40.000 0.00 0.00 38.16 2.41
2611 2725 4.263905 TGGGATTCTATTCACAGCCTTTGT 60.264 41.667 0.00 0.00 41.94 2.83
2612 2726 4.272489 TGGGATTCTATTCACAGCCTTTG 58.728 43.478 0.00 0.00 0.00 2.77
2613 2727 4.591321 TGGGATTCTATTCACAGCCTTT 57.409 40.909 0.00 0.00 0.00 3.11
2614 2728 4.723309 GATGGGATTCTATTCACAGCCTT 58.277 43.478 0.00 0.00 31.26 4.35
2615 2729 4.363991 GATGGGATTCTATTCACAGCCT 57.636 45.455 0.00 0.00 31.26 4.58
2617 2731 3.073650 AGGGATGGGATTCTATTCACAGC 59.926 47.826 0.00 0.00 34.69 4.40
2618 2732 4.263243 GGAGGGATGGGATTCTATTCACAG 60.263 50.000 0.00 0.00 31.26 3.66
2619 2733 3.652869 GGAGGGATGGGATTCTATTCACA 59.347 47.826 0.00 0.00 32.56 3.58
2620 2734 3.009584 GGGAGGGATGGGATTCTATTCAC 59.990 52.174 0.00 0.00 0.00 3.18
2621 2735 3.260205 GGGAGGGATGGGATTCTATTCA 58.740 50.000 0.00 0.00 0.00 2.57
2622 2736 3.260205 TGGGAGGGATGGGATTCTATTC 58.740 50.000 0.00 0.00 0.00 1.75
2623 2737 3.383780 TGGGAGGGATGGGATTCTATT 57.616 47.619 0.00 0.00 0.00 1.73
2624 2738 3.383780 TTGGGAGGGATGGGATTCTAT 57.616 47.619 0.00 0.00 0.00 1.98
2625 2739 2.908263 TTGGGAGGGATGGGATTCTA 57.092 50.000 0.00 0.00 0.00 2.10
2626 2740 2.068977 GATTGGGAGGGATGGGATTCT 58.931 52.381 0.00 0.00 0.00 2.40
2627 2741 1.782752 TGATTGGGAGGGATGGGATTC 59.217 52.381 0.00 0.00 0.00 2.52
2628 2742 1.785208 CTGATTGGGAGGGATGGGATT 59.215 52.381 0.00 0.00 0.00 3.01
2629 2743 1.346885 ACTGATTGGGAGGGATGGGAT 60.347 52.381 0.00 0.00 0.00 3.85
2630 2744 0.046242 ACTGATTGGGAGGGATGGGA 59.954 55.000 0.00 0.00 0.00 4.37
2631 2745 0.475906 GACTGATTGGGAGGGATGGG 59.524 60.000 0.00 0.00 0.00 4.00
2632 2746 0.475906 GGACTGATTGGGAGGGATGG 59.524 60.000 0.00 0.00 0.00 3.51
2633 2747 1.142465 CTGGACTGATTGGGAGGGATG 59.858 57.143 0.00 0.00 0.00 3.51
2634 2748 1.516110 CTGGACTGATTGGGAGGGAT 58.484 55.000 0.00 0.00 0.00 3.85
2635 2749 1.274703 GCTGGACTGATTGGGAGGGA 61.275 60.000 0.00 0.00 0.00 4.20
2636 2750 1.225704 GCTGGACTGATTGGGAGGG 59.774 63.158 0.00 0.00 0.00 4.30
2637 2751 1.225704 GGCTGGACTGATTGGGAGG 59.774 63.158 0.00 0.00 0.00 4.30
2638 2752 0.393537 GTGGCTGGACTGATTGGGAG 60.394 60.000 0.00 0.00 0.00 4.30
2639 2753 0.842030 AGTGGCTGGACTGATTGGGA 60.842 55.000 0.00 0.00 0.00 4.37
2640 2754 0.393537 GAGTGGCTGGACTGATTGGG 60.394 60.000 0.00 0.00 0.00 4.12
2641 2755 0.393537 GGAGTGGCTGGACTGATTGG 60.394 60.000 0.00 0.00 0.00 3.16
2642 2756 0.393537 GGGAGTGGCTGGACTGATTG 60.394 60.000 0.00 0.00 0.00 2.67
2643 2757 1.566298 GGGGAGTGGCTGGACTGATT 61.566 60.000 0.00 0.00 0.00 2.57
2644 2758 1.997874 GGGGAGTGGCTGGACTGAT 60.998 63.158 0.00 0.00 0.00 2.90
2645 2759 1.811025 TAGGGGAGTGGCTGGACTGA 61.811 60.000 0.00 0.00 0.00 3.41
2646 2760 0.692419 ATAGGGGAGTGGCTGGACTG 60.692 60.000 0.00 0.00 0.00 3.51
2647 2761 0.044855 AATAGGGGAGTGGCTGGACT 59.955 55.000 0.00 0.00 0.00 3.85
2648 2762 0.919710 AAATAGGGGAGTGGCTGGAC 59.080 55.000 0.00 0.00 0.00 4.02
2649 2763 2.124411 GTAAATAGGGGAGTGGCTGGA 58.876 52.381 0.00 0.00 0.00 3.86
2650 2764 1.143073 GGTAAATAGGGGAGTGGCTGG 59.857 57.143 0.00 0.00 0.00 4.85
2651 2765 1.143073 GGGTAAATAGGGGAGTGGCTG 59.857 57.143 0.00 0.00 0.00 4.85
2652 2766 1.010917 AGGGTAAATAGGGGAGTGGCT 59.989 52.381 0.00 0.00 0.00 4.75
2653 2767 1.519498 AGGGTAAATAGGGGAGTGGC 58.481 55.000 0.00 0.00 0.00 5.01
2654 2768 3.072622 GCTTAGGGTAAATAGGGGAGTGG 59.927 52.174 0.00 0.00 0.00 4.00
2655 2769 3.072622 GGCTTAGGGTAAATAGGGGAGTG 59.927 52.174 0.00 0.00 0.00 3.51
2656 2770 3.324689 GGCTTAGGGTAAATAGGGGAGT 58.675 50.000 0.00 0.00 0.00 3.85
2657 2771 2.302157 CGGCTTAGGGTAAATAGGGGAG 59.698 54.545 0.00 0.00 0.00 4.30
2658 2772 2.332117 CGGCTTAGGGTAAATAGGGGA 58.668 52.381 0.00 0.00 0.00 4.81
2659 2773 1.271217 GCGGCTTAGGGTAAATAGGGG 60.271 57.143 0.00 0.00 0.00 4.79
2660 2774 1.271217 GGCGGCTTAGGGTAAATAGGG 60.271 57.143 0.00 0.00 0.00 3.53
2661 2775 1.418637 TGGCGGCTTAGGGTAAATAGG 59.581 52.381 11.43 0.00 0.00 2.57
2662 2776 2.490991 GTGGCGGCTTAGGGTAAATAG 58.509 52.381 11.43 0.00 0.00 1.73
2663 2777 1.141455 GGTGGCGGCTTAGGGTAAATA 59.859 52.381 11.43 0.00 0.00 1.40
2664 2778 0.106868 GGTGGCGGCTTAGGGTAAAT 60.107 55.000 11.43 0.00 0.00 1.40
2665 2779 1.300634 GGTGGCGGCTTAGGGTAAA 59.699 57.895 11.43 0.00 0.00 2.01
2666 2780 2.672181 GGGTGGCGGCTTAGGGTAA 61.672 63.158 11.43 0.00 0.00 2.85
2667 2781 2.241043 TAGGGTGGCGGCTTAGGGTA 62.241 60.000 11.43 0.00 0.00 3.69
2668 2782 3.629035 TAGGGTGGCGGCTTAGGGT 62.629 63.158 11.43 0.00 0.00 4.34
2669 2783 2.766651 TAGGGTGGCGGCTTAGGG 60.767 66.667 11.43 0.00 0.00 3.53
2670 2784 2.064581 AGTAGGGTGGCGGCTTAGG 61.065 63.158 11.43 0.00 0.00 2.69
2671 2785 1.144057 CAGTAGGGTGGCGGCTTAG 59.856 63.158 11.43 0.00 0.00 2.18
2672 2786 1.611261 ACAGTAGGGTGGCGGCTTA 60.611 57.895 11.43 0.00 0.00 3.09
2673 2787 2.928396 ACAGTAGGGTGGCGGCTT 60.928 61.111 11.43 0.00 0.00 4.35
2674 2788 3.706373 CACAGTAGGGTGGCGGCT 61.706 66.667 11.43 0.00 35.13 5.52
2676 2790 3.545124 TTGCACAGTAGGGTGGCGG 62.545 63.158 0.00 0.00 39.19 6.13
2677 2791 1.577328 CTTTGCACAGTAGGGTGGCG 61.577 60.000 0.00 0.00 39.19 5.69
2678 2792 1.866853 GCTTTGCACAGTAGGGTGGC 61.867 60.000 1.15 0.00 39.19 5.01
2679 2793 1.244019 GGCTTTGCACAGTAGGGTGG 61.244 60.000 1.15 0.00 39.19 4.61
2680 2794 1.244019 GGGCTTTGCACAGTAGGGTG 61.244 60.000 1.15 0.00 41.72 4.61
2681 2795 1.074951 GGGCTTTGCACAGTAGGGT 59.925 57.895 1.15 0.00 0.00 4.34
2682 2796 0.618458 TAGGGCTTTGCACAGTAGGG 59.382 55.000 1.15 0.00 32.33 3.53
2683 2797 1.279271 ACTAGGGCTTTGCACAGTAGG 59.721 52.381 1.15 0.00 32.33 3.18
2684 2798 2.770164 ACTAGGGCTTTGCACAGTAG 57.230 50.000 1.15 0.00 32.33 2.57
2685 2799 2.500098 CCTACTAGGGCTTTGCACAGTA 59.500 50.000 1.15 0.31 32.33 2.74
2686 2800 1.279271 CCTACTAGGGCTTTGCACAGT 59.721 52.381 1.15 0.00 32.33 3.55
2687 2801 1.555075 TCCTACTAGGGCTTTGCACAG 59.445 52.381 2.04 0.00 35.59 3.66
2688 2802 1.651737 TCCTACTAGGGCTTTGCACA 58.348 50.000 2.04 0.00 35.59 4.57
2689 2803 2.565841 CATCCTACTAGGGCTTTGCAC 58.434 52.381 2.04 0.00 35.59 4.57
2690 2804 1.490490 CCATCCTACTAGGGCTTTGCA 59.510 52.381 2.04 0.00 35.59 4.08
2691 2805 1.768870 TCCATCCTACTAGGGCTTTGC 59.231 52.381 2.04 0.00 35.59 3.68
2692 2806 3.008485 GGATCCATCCTACTAGGGCTTTG 59.992 52.174 6.95 0.00 43.73 2.77
2693 2807 3.252351 GGATCCATCCTACTAGGGCTTT 58.748 50.000 6.95 0.00 43.73 3.51
2694 2808 2.909217 GGATCCATCCTACTAGGGCTT 58.091 52.381 6.95 0.00 43.73 4.35
2695 2809 2.632763 GGATCCATCCTACTAGGGCT 57.367 55.000 6.95 0.00 43.73 5.19
2706 2820 2.356793 CCGAGCGCTGGATCCATC 60.357 66.667 21.98 10.67 0.00 3.51
2707 2821 3.157252 ACCGAGCGCTGGATCCAT 61.157 61.111 26.07 0.00 0.00 3.41
2708 2822 4.147449 CACCGAGCGCTGGATCCA 62.147 66.667 26.07 15.27 0.00 3.41
2709 2823 4.148825 ACACCGAGCGCTGGATCC 62.149 66.667 26.07 4.20 0.00 3.36
2710 2824 2.887568 CACACCGAGCGCTGGATC 60.888 66.667 26.07 8.43 0.00 3.36
2714 2828 2.839324 GATTTGCACACCGAGCGCTG 62.839 60.000 18.48 3.12 33.85 5.18
2715 2829 2.669569 ATTTGCACACCGAGCGCT 60.670 55.556 11.27 11.27 33.85 5.92
2716 2830 2.202349 GATTTGCACACCGAGCGC 60.202 61.111 0.00 0.00 33.85 5.92
2717 2831 2.480555 GGATTTGCACACCGAGCG 59.519 61.111 0.00 0.00 33.85 5.03
2718 2832 0.392461 TAGGGATTTGCACACCGAGC 60.392 55.000 0.00 0.00 0.00 5.03
2719 2833 1.066143 ACTAGGGATTTGCACACCGAG 60.066 52.381 0.00 0.00 0.00 4.63
2720 2834 0.981183 ACTAGGGATTTGCACACCGA 59.019 50.000 0.00 0.00 0.00 4.69
2721 2835 2.550978 CTACTAGGGATTTGCACACCG 58.449 52.381 0.00 0.00 0.00 4.94
2722 2836 2.504175 TCCTACTAGGGATTTGCACACC 59.496 50.000 2.04 0.00 35.59 4.16
2723 2837 3.906720 TCCTACTAGGGATTTGCACAC 57.093 47.619 2.04 0.00 35.59 3.82
2724 2838 5.464069 TCTATCCTACTAGGGATTTGCACA 58.536 41.667 5.92 0.00 42.89 4.57
2725 2839 6.351456 GGATCTATCCTACTAGGGATTTGCAC 60.351 46.154 5.92 0.00 42.89 4.57
2726 2840 5.721960 GGATCTATCCTACTAGGGATTTGCA 59.278 44.000 5.92 0.00 42.89 4.08
2727 2841 6.228616 GGATCTATCCTACTAGGGATTTGC 57.771 45.833 5.92 0.00 42.89 3.68
2733 2847 4.258457 CCCTGGATCTATCCTACTAGGG 57.742 54.545 14.59 14.59 45.02 3.53
2742 2856 0.605589 CACCGAGCCCTGGATCTATC 59.394 60.000 0.00 0.00 0.00 2.08
2743 2857 0.188587 TCACCGAGCCCTGGATCTAT 59.811 55.000 0.00 0.00 0.00 1.98
2744 2858 0.468214 CTCACCGAGCCCTGGATCTA 60.468 60.000 0.00 0.00 0.00 1.98
2745 2859 1.760086 CTCACCGAGCCCTGGATCT 60.760 63.158 0.00 0.00 0.00 2.75
2746 2860 2.818132 CTCACCGAGCCCTGGATC 59.182 66.667 0.00 0.00 0.00 3.36
2755 2869 2.487428 CTCCGTCAGCTCACCGAG 59.513 66.667 0.00 0.00 0.00 4.63
2756 2870 3.062466 CCTCCGTCAGCTCACCGA 61.062 66.667 0.00 0.00 0.00 4.69
2757 2871 2.549611 CTTCCTCCGTCAGCTCACCG 62.550 65.000 0.00 0.00 0.00 4.94
2758 2872 1.216710 CTTCCTCCGTCAGCTCACC 59.783 63.158 0.00 0.00 0.00 4.02
2759 2873 0.172352 CTCTTCCTCCGTCAGCTCAC 59.828 60.000 0.00 0.00 0.00 3.51
2760 2874 0.038310 TCTCTTCCTCCGTCAGCTCA 59.962 55.000 0.00 0.00 0.00 4.26
2761 2875 1.134175 CTTCTCTTCCTCCGTCAGCTC 59.866 57.143 0.00 0.00 0.00 4.09
2762 2876 1.181786 CTTCTCTTCCTCCGTCAGCT 58.818 55.000 0.00 0.00 0.00 4.24
2763 2877 1.178276 TCTTCTCTTCCTCCGTCAGC 58.822 55.000 0.00 0.00 0.00 4.26
2764 2878 2.165437 CCTTCTTCTCTTCCTCCGTCAG 59.835 54.545 0.00 0.00 0.00 3.51
2765 2879 2.171840 CCTTCTTCTCTTCCTCCGTCA 58.828 52.381 0.00 0.00 0.00 4.35
2766 2880 1.134936 GCCTTCTTCTCTTCCTCCGTC 60.135 57.143 0.00 0.00 0.00 4.79
2767 2881 0.899019 GCCTTCTTCTCTTCCTCCGT 59.101 55.000 0.00 0.00 0.00 4.69
2768 2882 0.179124 CGCCTTCTTCTCTTCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
2769 2883 0.176910 CCGCCTTCTTCTCTTCCTCC 59.823 60.000 0.00 0.00 0.00 4.30
2770 2884 0.899019 ACCGCCTTCTTCTCTTCCTC 59.101 55.000 0.00 0.00 0.00 3.71
2771 2885 0.610687 CACCGCCTTCTTCTCTTCCT 59.389 55.000 0.00 0.00 0.00 3.36
2772 2886 0.391793 CCACCGCCTTCTTCTCTTCC 60.392 60.000 0.00 0.00 0.00 3.46
2773 2887 0.608640 TCCACCGCCTTCTTCTCTTC 59.391 55.000 0.00 0.00 0.00 2.87
2774 2888 0.610687 CTCCACCGCCTTCTTCTCTT 59.389 55.000 0.00 0.00 0.00 2.85
2775 2889 1.261238 CCTCCACCGCCTTCTTCTCT 61.261 60.000 0.00 0.00 0.00 3.10
2776 2890 1.219393 CCTCCACCGCCTTCTTCTC 59.781 63.158 0.00 0.00 0.00 2.87
2777 2891 1.536662 ACCTCCACCGCCTTCTTCT 60.537 57.895 0.00 0.00 0.00 2.85
2778 2892 1.376037 CACCTCCACCGCCTTCTTC 60.376 63.158 0.00 0.00 0.00 2.87
2779 2893 1.831652 CTCACCTCCACCGCCTTCTT 61.832 60.000 0.00 0.00 0.00 2.52
2780 2894 2.203788 TCACCTCCACCGCCTTCT 60.204 61.111 0.00 0.00 0.00 2.85
2781 2895 2.266055 CTCACCTCCACCGCCTTC 59.734 66.667 0.00 0.00 0.00 3.46
2782 2896 3.322466 CCTCACCTCCACCGCCTT 61.322 66.667 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.