Multiple sequence alignment - TraesCS4A01G290200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G290200 chr4A 100.000 6667 0 0 1 6667 594168272 594161606 0.000000e+00 12312.0
1 TraesCS4A01G290200 chr4A 85.680 419 40 10 3552 3955 594152258 594151845 2.220000e-114 424.0
2 TraesCS4A01G290200 chr4A 84.475 438 51 13 4866 5297 594151251 594150825 3.720000e-112 416.0
3 TraesCS4A01G290200 chr4A 91.176 204 18 0 4186 4389 594151609 594151406 1.830000e-70 278.0
4 TraesCS4A01G290200 chr4A 95.385 130 6 0 4669 4798 594151388 594151259 2.440000e-49 207.0
5 TraesCS4A01G290200 chr4A 89.209 139 14 1 2647 2785 546576092 546575955 8.890000e-39 172.0
6 TraesCS4A01G290200 chr4A 86.232 138 12 4 2374 2504 546635798 546635661 6.970000e-30 143.0
7 TraesCS4A01G290200 chr4A 98.361 61 1 0 6166 6226 175653737 175653677 2.540000e-19 108.0
8 TraesCS4A01G290200 chr4B 91.375 2632 150 31 1386 3955 17253427 17256043 0.000000e+00 3531.0
9 TraesCS4A01G290200 chr4B 91.559 2168 117 28 3985 6113 17256515 17258655 0.000000e+00 2929.0
10 TraesCS4A01G290200 chr4B 83.721 645 71 24 4669 5294 17269817 17270446 4.480000e-161 579.0
11 TraesCS4A01G290200 chr4B 88.544 419 31 8 3552 3955 17268943 17269359 6.010000e-135 492.0
12 TraesCS4A01G290200 chr4B 87.649 251 17 5 648 885 17252640 17252889 5.090000e-71 279.0
13 TraesCS4A01G290200 chr4B 97.753 89 2 0 6399 6487 17258966 17259054 3.220000e-33 154.0
14 TraesCS4A01G290200 chr4B 95.122 82 4 0 6584 6665 17259084 17259165 5.430000e-26 130.0
15 TraesCS4A01G290200 chr4B 94.737 38 1 1 3192 3229 17249819 17249855 2.600000e-04 58.4
16 TraesCS4A01G290200 chr4D 95.618 1894 56 11 2075 3955 9249048 9250927 0.000000e+00 3013.0
17 TraesCS4A01G290200 chr4D 94.195 1516 59 8 3974 5478 9250990 9252487 0.000000e+00 2285.0
18 TraesCS4A01G290200 chr4D 84.744 1134 85 40 365 1470 9247554 9248627 0.000000e+00 1055.0
19 TraesCS4A01G290200 chr4D 85.826 642 48 14 5506 6123 9252481 9253103 5.640000e-180 641.0
20 TraesCS4A01G290200 chr4D 91.094 393 20 10 1514 1896 9248640 9249027 9.910000e-143 518.0
21 TraesCS4A01G290200 chr4D 78.506 763 124 31 2786 3518 28237046 28237798 1.310000e-126 464.0
22 TraesCS4A01G290200 chr4D 87.112 419 34 10 3552 3955 9262727 9263140 2.190000e-124 457.0
23 TraesCS4A01G290200 chr4D 84.174 436 57 8 4866 5298 9263734 9264160 4.810000e-111 412.0
24 TraesCS4A01G290200 chr4D 91.561 237 18 1 6244 6480 9253119 9253353 6.450000e-85 326.0
25 TraesCS4A01G290200 chr4D 91.542 201 17 0 4186 4386 9263376 9263576 1.830000e-70 278.0
26 TraesCS4A01G290200 chr4D 83.505 291 35 11 86 376 9247390 9247667 6.630000e-65 259.0
27 TraesCS4A01G290200 chr4D 95.385 130 6 0 4669 4798 9263597 9263726 2.440000e-49 207.0
28 TraesCS4A01G290200 chr4D 81.159 138 14 7 6507 6639 393250021 393249891 4.250000e-17 100.0
29 TraesCS4A01G290200 chr4D 95.122 41 2 0 6599 6639 46659451 46659411 1.550000e-06 65.8
30 TraesCS4A01G290200 chr6B 98.438 64 1 0 6164 6227 152914037 152913974 5.460000e-21 113.0
31 TraesCS4A01G290200 chr6B 98.361 61 1 0 6166 6226 704652180 704652120 2.540000e-19 108.0
32 TraesCS4A01G290200 chr6B 91.139 79 5 2 6169 6246 87534659 87534582 9.140000e-19 106.0
33 TraesCS4A01G290200 chr7B 98.387 62 1 0 6166 6227 497969374 497969435 7.070000e-20 110.0
34 TraesCS4A01G290200 chr3A 92.958 71 3 2 6157 6227 27760111 27760179 1.180000e-17 102.0
35 TraesCS4A01G290200 chr1A 92.857 70 5 0 6157 6226 572981083 572981152 1.180000e-17 102.0
36 TraesCS4A01G290200 chr5B 91.781 73 4 2 6156 6227 354513076 354513147 4.250000e-17 100.0
37 TraesCS4A01G290200 chr2B 89.744 78 5 3 6152 6227 567116695 567116619 5.500000e-16 97.1
38 TraesCS4A01G290200 chr3B 77.305 141 21 7 6504 6639 630880049 630880183 9.270000e-09 73.1
39 TraesCS4A01G290200 chr2A 95.556 45 2 0 6508 6552 749846299 749846343 9.270000e-09 73.1
40 TraesCS4A01G290200 chr2D 100.000 29 0 0 6508 6536 618830706 618830734 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G290200 chr4A 594161606 594168272 6666 True 12312.000000 12312 100.000000 1 6667 1 chr4A.!!$R4 6666
1 TraesCS4A01G290200 chr4A 594150825 594152258 1433 True 331.250000 424 89.179000 3552 5297 4 chr4A.!!$R5 1745
2 TraesCS4A01G290200 chr4B 17249819 17259165 9346 False 1180.233333 3531 93.032500 648 6665 6 chr4B.!!$F1 6017
3 TraesCS4A01G290200 chr4B 17268943 17270446 1503 False 535.500000 579 86.132500 3552 5294 2 chr4B.!!$F2 1742
4 TraesCS4A01G290200 chr4D 9247390 9253353 5963 False 1156.714286 3013 89.506143 86 6480 7 chr4D.!!$F2 6394
5 TraesCS4A01G290200 chr4D 28237046 28237798 752 False 464.000000 464 78.506000 2786 3518 1 chr4D.!!$F1 732
6 TraesCS4A01G290200 chr4D 9262727 9264160 1433 False 338.500000 457 89.553250 3552 5298 4 chr4D.!!$F3 1746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 239 0.031043 AAATGGACGACGACACACGA 59.969 50.0 0.00 0.00 45.77 4.35 F
637 639 0.031994 CCAAACCGGGTTGAAGCTTG 59.968 55.0 33.82 11.76 0.00 4.01 F
946 3139 0.033503 CAATCCCACCTACCCAACCC 60.034 60.0 0.00 0.00 0.00 4.11 F
1368 3588 0.173481 GCGAAATGCCCCTCCTTTTC 59.827 55.0 0.00 0.00 37.76 2.29 F
1606 3862 0.390340 ATGTGAATGCGAGCGACAGT 60.390 50.0 0.00 0.00 0.00 3.55 F
2014 4297 0.394938 TGCGGTGGTTTCTGCTTCTA 59.605 50.0 0.00 0.00 40.06 2.10 F
3577 5909 0.881118 GCGATGATGTGGTGTTGGTT 59.119 50.0 0.00 0.00 0.00 3.67 F
4300 7094 0.671163 ATTTTGCCAGTGCCATTGCG 60.671 50.0 0.00 0.00 41.78 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 3777 0.100503 AGCAACGTCAAGGCACAAAC 59.899 50.000 0.00 0.0 0.00 2.93 R
1531 3778 0.380378 GAGCAACGTCAAGGCACAAA 59.620 50.000 0.00 0.0 0.00 2.83 R
2544 4846 1.001378 ACAAACCGTCATGCTTTGAGC 60.001 47.619 10.23 0.0 42.82 4.26 R
3122 5437 0.036105 CTGCAGCAGTCATGGGTGTA 60.036 55.000 14.90 0.0 36.21 2.90 R
3577 5909 1.116536 TCCCACGTGCTCCAACAGTA 61.117 55.000 10.91 0.0 0.00 2.74 R
3992 6785 3.442977 AGTGATGGTTCCGTACTACTGTC 59.557 47.826 0.00 0.0 0.00 3.51 R
4515 7318 0.995024 ACCTTGCTGGCCTTATCACT 59.005 50.000 3.32 0.0 40.22 3.41 R
5889 8813 0.539438 TCCAAAGCACCCATCACCAC 60.539 55.000 0.00 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.341846 TCCCAGTGAAACACCTTGTC 57.658 50.000 0.00 0.00 41.43 3.18
21 22 2.241176 TCCCAGTGAAACACCTTGTCTT 59.759 45.455 0.00 0.00 41.43 3.01
22 23 2.618709 CCCAGTGAAACACCTTGTCTTC 59.381 50.000 0.00 0.00 41.43 2.87
23 24 2.287915 CCAGTGAAACACCTTGTCTTCG 59.712 50.000 0.00 0.00 41.43 3.79
24 25 1.940613 AGTGAAACACCTTGTCTTCGC 59.059 47.619 0.00 0.00 41.43 4.70
25 26 1.668751 GTGAAACACCTTGTCTTCGCA 59.331 47.619 0.00 0.00 36.32 5.10
26 27 1.939934 TGAAACACCTTGTCTTCGCAG 59.060 47.619 0.00 0.00 0.00 5.18
27 28 1.940613 GAAACACCTTGTCTTCGCAGT 59.059 47.619 0.00 0.00 0.00 4.40
29 30 3.402628 AACACCTTGTCTTCGCAGTAT 57.597 42.857 0.00 0.00 0.00 2.12
30 31 4.530710 AACACCTTGTCTTCGCAGTATA 57.469 40.909 0.00 0.00 0.00 1.47
33 34 5.833082 ACACCTTGTCTTCGCAGTATATAG 58.167 41.667 0.00 0.00 0.00 1.31
34 35 5.360144 ACACCTTGTCTTCGCAGTATATAGT 59.640 40.000 0.00 0.00 0.00 2.12
36 37 5.593095 ACCTTGTCTTCGCAGTATATAGTGA 59.407 40.000 19.76 1.82 0.00 3.41
37 38 5.915758 CCTTGTCTTCGCAGTATATAGTGAC 59.084 44.000 19.76 9.78 0.00 3.67
38 39 6.445357 TTGTCTTCGCAGTATATAGTGACA 57.555 37.500 19.76 11.95 0.00 3.58
39 40 6.635030 TGTCTTCGCAGTATATAGTGACAT 57.365 37.500 19.76 0.00 0.00 3.06
40 41 7.039313 TGTCTTCGCAGTATATAGTGACATT 57.961 36.000 19.76 0.00 0.00 2.71
43 44 6.923508 TCTTCGCAGTATATAGTGACATTTGG 59.076 38.462 19.76 4.54 0.00 3.28
44 45 4.988540 TCGCAGTATATAGTGACATTTGGC 59.011 41.667 19.76 2.61 0.00 4.52
46 47 5.308825 GCAGTATATAGTGACATTTGGCCT 58.691 41.667 19.76 0.00 0.00 5.19
47 48 5.765182 GCAGTATATAGTGACATTTGGCCTT 59.235 40.000 19.76 0.00 0.00 4.35
48 49 6.293626 GCAGTATATAGTGACATTTGGCCTTG 60.294 42.308 19.76 1.36 0.00 3.61
50 51 6.992715 AGTATATAGTGACATTTGGCCTTGTC 59.007 38.462 20.45 20.45 42.05 3.18
52 53 0.603065 GTGACATTTGGCCTTGTCCC 59.397 55.000 22.80 13.36 41.22 4.46
53 54 0.187117 TGACATTTGGCCTTGTCCCA 59.813 50.000 22.80 9.98 41.22 4.37
54 55 1.337118 GACATTTGGCCTTGTCCCAA 58.663 50.000 17.95 0.00 40.43 4.12
55 56 1.901833 GACATTTGGCCTTGTCCCAAT 59.098 47.619 17.95 0.00 41.64 3.16
56 57 3.096092 GACATTTGGCCTTGTCCCAATA 58.904 45.455 17.95 0.00 41.64 1.90
57 58 2.831526 ACATTTGGCCTTGTCCCAATAC 59.168 45.455 3.32 0.00 41.64 1.89
58 59 2.685106 TTTGGCCTTGTCCCAATACA 57.315 45.000 3.32 0.00 41.64 2.29
62 63 3.515562 TGGCCTTGTCCCAATACATTTT 58.484 40.909 3.32 0.00 0.00 1.82
63 64 3.906846 TGGCCTTGTCCCAATACATTTTT 59.093 39.130 3.32 0.00 0.00 1.94
64 65 4.020662 TGGCCTTGTCCCAATACATTTTTC 60.021 41.667 3.32 0.00 0.00 2.29
65 66 4.503910 GCCTTGTCCCAATACATTTTTCC 58.496 43.478 0.00 0.00 0.00 3.13
67 68 5.723295 CCTTGTCCCAATACATTTTTCCAG 58.277 41.667 0.00 0.00 0.00 3.86
69 70 6.435904 CCTTGTCCCAATACATTTTTCCAGTA 59.564 38.462 0.00 0.00 0.00 2.74
70 71 6.827586 TGTCCCAATACATTTTTCCAGTAC 57.172 37.500 0.00 0.00 0.00 2.73
71 72 6.548321 TGTCCCAATACATTTTTCCAGTACT 58.452 36.000 0.00 0.00 0.00 2.73
84 85 2.503331 CCAGTACTTGGCATGTGAACA 58.497 47.619 15.57 0.00 40.87 3.18
121 122 1.359117 CCGTACGTCGATGCCTCAT 59.641 57.895 15.21 0.00 42.86 2.90
124 125 0.577269 GTACGTCGATGCCTCATTGC 59.423 55.000 4.06 0.00 0.00 3.56
238 239 0.031043 AAATGGACGACGACACACGA 59.969 50.000 0.00 0.00 45.77 4.35
243 244 1.665161 GGACGACGACACACGAGAAAT 60.665 52.381 0.00 0.00 45.77 2.17
249 250 4.659088 GACGACACACGAGAAATATGAGA 58.341 43.478 0.00 0.00 45.77 3.27
250 251 4.663166 ACGACACACGAGAAATATGAGAG 58.337 43.478 0.00 0.00 45.77 3.20
251 252 4.038361 CGACACACGAGAAATATGAGAGG 58.962 47.826 0.00 0.00 45.77 3.69
252 253 4.363999 GACACACGAGAAATATGAGAGGG 58.636 47.826 0.00 0.00 0.00 4.30
253 254 3.133003 ACACACGAGAAATATGAGAGGGG 59.867 47.826 0.00 0.00 0.00 4.79
254 255 2.103263 ACACGAGAAATATGAGAGGGGC 59.897 50.000 0.00 0.00 0.00 5.80
256 257 2.366916 ACGAGAAATATGAGAGGGGCAG 59.633 50.000 0.00 0.00 0.00 4.85
257 258 2.289320 CGAGAAATATGAGAGGGGCAGG 60.289 54.545 0.00 0.00 0.00 4.85
258 259 2.039613 GAGAAATATGAGAGGGGCAGGG 59.960 54.545 0.00 0.00 0.00 4.45
259 260 1.074566 GAAATATGAGAGGGGCAGGGG 59.925 57.143 0.00 0.00 0.00 4.79
260 261 0.271927 AATATGAGAGGGGCAGGGGA 59.728 55.000 0.00 0.00 0.00 4.81
275 276 3.551407 GGAGGGGGAGGCGATGTC 61.551 72.222 0.00 0.00 0.00 3.06
280 281 1.376812 GGGGAGGCGATGTCGTTTT 60.377 57.895 4.20 0.00 42.22 2.43
281 282 1.366854 GGGGAGGCGATGTCGTTTTC 61.367 60.000 4.20 0.36 42.22 2.29
282 283 0.672401 GGGAGGCGATGTCGTTTTCA 60.672 55.000 4.20 0.00 42.22 2.69
283 284 1.369625 GGAGGCGATGTCGTTTTCAT 58.630 50.000 4.20 0.00 42.22 2.57
291 292 1.153353 TGTCGTTTTCATTCCTCGGC 58.847 50.000 0.00 0.00 0.00 5.54
318 319 3.560278 CGGCGAACGGTACATGGC 61.560 66.667 0.00 0.00 39.42 4.40
353 354 1.538634 CCGACCCGCGACCATAAATTA 60.539 52.381 8.23 0.00 44.57 1.40
356 357 1.136695 ACCCGCGACCATAAATTACGA 59.863 47.619 8.23 0.00 0.00 3.43
361 362 4.435784 CCGCGACCATAAATTACGACAAAA 60.436 41.667 8.23 0.00 0.00 2.44
362 363 4.489493 CGCGACCATAAATTACGACAAAAC 59.511 41.667 0.00 0.00 0.00 2.43
365 366 6.021782 GCGACCATAAATTACGACAAAACATG 60.022 38.462 0.00 0.00 0.00 3.21
367 368 7.425309 CGACCATAAATTACGACAAAACATGAG 59.575 37.037 0.00 0.00 0.00 2.90
368 369 7.535139 ACCATAAATTACGACAAAACATGAGG 58.465 34.615 0.00 0.00 0.00 3.86
369 370 6.972328 CCATAAATTACGACAAAACATGAGGG 59.028 38.462 0.00 0.00 0.00 4.30
370 371 7.148154 CCATAAATTACGACAAAACATGAGGGA 60.148 37.037 0.00 0.00 0.00 4.20
372 373 2.185004 ACGACAAAACATGAGGGAGG 57.815 50.000 0.00 0.00 0.00 4.30
374 375 0.804989 GACAAAACATGAGGGAGGCG 59.195 55.000 0.00 0.00 0.00 5.52
375 376 0.400213 ACAAAACATGAGGGAGGCGA 59.600 50.000 0.00 0.00 0.00 5.54
376 377 1.004745 ACAAAACATGAGGGAGGCGAT 59.995 47.619 0.00 0.00 0.00 4.58
378 379 0.620556 AAACATGAGGGAGGCGATGT 59.379 50.000 0.00 0.00 0.00 3.06
381 382 0.107508 CATGAGGGAGGCGATGTTGT 60.108 55.000 0.00 0.00 0.00 3.32
383 384 0.400213 TGAGGGAGGCGATGTTGTTT 59.600 50.000 0.00 0.00 0.00 2.83
384 385 1.202879 TGAGGGAGGCGATGTTGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
385 386 1.468914 GAGGGAGGCGATGTTGTTTTC 59.531 52.381 0.00 0.00 0.00 2.29
386 387 1.202879 AGGGAGGCGATGTTGTTTTCA 60.203 47.619 0.00 0.00 0.00 2.69
387 388 1.818674 GGGAGGCGATGTTGTTTTCAT 59.181 47.619 0.00 0.00 0.00 2.57
388 389 2.159379 GGGAGGCGATGTTGTTTTCATC 60.159 50.000 0.00 0.00 38.49 2.92
389 390 2.159379 GGAGGCGATGTTGTTTTCATCC 60.159 50.000 0.00 0.00 38.60 3.51
390 391 1.818674 AGGCGATGTTGTTTTCATCCC 59.181 47.619 0.00 0.00 38.60 3.85
392 393 2.231235 GGCGATGTTGTTTTCATCCCTT 59.769 45.455 0.00 0.00 38.60 3.95
393 394 3.442273 GGCGATGTTGTTTTCATCCCTTA 59.558 43.478 0.00 0.00 38.60 2.69
395 396 4.662145 CGATGTTGTTTTCATCCCTTAGC 58.338 43.478 0.00 0.00 38.60 3.09
396 397 4.662145 GATGTTGTTTTCATCCCTTAGCG 58.338 43.478 0.00 0.00 36.62 4.26
397 398 3.745799 TGTTGTTTTCATCCCTTAGCGA 58.254 40.909 0.00 0.00 0.00 4.93
400 401 4.214986 TGTTTTCATCCCTTAGCGATGA 57.785 40.909 5.55 5.55 43.35 2.92
401 402 4.780815 TGTTTTCATCCCTTAGCGATGAT 58.219 39.130 9.97 0.00 44.19 2.45
402 403 4.576053 TGTTTTCATCCCTTAGCGATGATG 59.424 41.667 9.97 2.60 44.19 3.07
403 404 3.407424 TTCATCCCTTAGCGATGATGG 57.593 47.619 9.97 0.00 44.19 3.51
404 405 1.002430 TCATCCCTTAGCGATGATGGC 59.998 52.381 5.55 0.00 40.88 4.40
405 406 0.326264 ATCCCTTAGCGATGATGGCC 59.674 55.000 0.00 0.00 0.00 5.36
406 407 1.669115 CCCTTAGCGATGATGGCCG 60.669 63.158 0.00 0.00 0.00 6.13
407 408 1.669115 CCTTAGCGATGATGGCCGG 60.669 63.158 0.00 0.00 0.00 6.13
408 409 1.069765 CTTAGCGATGATGGCCGGT 59.930 57.895 1.90 0.00 39.86 5.28
409 410 1.224069 CTTAGCGATGATGGCCGGTG 61.224 60.000 1.90 0.00 37.66 4.94
410 411 1.681486 TTAGCGATGATGGCCGGTGA 61.681 55.000 1.90 0.00 37.66 4.02
411 412 1.681486 TAGCGATGATGGCCGGTGAA 61.681 55.000 1.90 0.00 37.66 3.18
412 413 2.823829 GCGATGATGGCCGGTGAAC 61.824 63.158 1.90 0.00 0.00 3.18
413 414 1.449423 CGATGATGGCCGGTGAACA 60.449 57.895 1.90 0.00 0.00 3.18
414 415 1.705337 CGATGATGGCCGGTGAACAC 61.705 60.000 1.90 0.00 0.00 3.32
415 416 0.392998 GATGATGGCCGGTGAACACT 60.393 55.000 1.90 0.00 0.00 3.55
416 417 0.908910 ATGATGGCCGGTGAACACTA 59.091 50.000 1.90 0.00 0.00 2.74
417 418 0.036765 TGATGGCCGGTGAACACTAC 60.037 55.000 1.90 0.00 0.00 2.73
418 419 0.036765 GATGGCCGGTGAACACTACA 60.037 55.000 1.90 0.71 0.00 2.74
419 420 0.398696 ATGGCCGGTGAACACTACAA 59.601 50.000 1.90 0.00 0.00 2.41
420 421 0.250124 TGGCCGGTGAACACTACAAG 60.250 55.000 1.90 0.00 0.00 3.16
421 422 1.574702 GGCCGGTGAACACTACAAGC 61.575 60.000 1.90 1.98 0.00 4.01
422 423 1.574702 GCCGGTGAACACTACAAGCC 61.575 60.000 1.90 0.00 0.00 4.35
424 425 1.610624 CCGGTGAACACTACAAGCCAT 60.611 52.381 0.00 0.00 0.00 4.40
425 426 2.354303 CCGGTGAACACTACAAGCCATA 60.354 50.000 0.00 0.00 0.00 2.74
426 427 3.531538 CGGTGAACACTACAAGCCATAT 58.468 45.455 4.96 0.00 0.00 1.78
427 428 3.555956 CGGTGAACACTACAAGCCATATC 59.444 47.826 4.96 0.00 0.00 1.63
428 429 3.877508 GGTGAACACTACAAGCCATATCC 59.122 47.826 4.96 0.00 0.00 2.59
431 432 5.008019 GTGAACACTACAAGCCATATCCATG 59.992 44.000 0.00 0.00 0.00 3.66
440 441 0.779358 CCATATCCATGGCCTCCCAA 59.221 55.000 6.96 0.00 45.29 4.12
441 442 1.548582 CCATATCCATGGCCTCCCAAC 60.549 57.143 6.96 0.00 45.29 3.77
442 443 1.145531 CATATCCATGGCCTCCCAACA 59.854 52.381 6.96 0.00 46.14 3.33
444 445 1.508667 ATCCATGGCCTCCCAACACA 61.509 55.000 6.96 0.00 46.14 3.72
446 447 2.034066 ATGGCCTCCCAACACACG 59.966 61.111 3.32 0.00 46.14 4.49
447 448 2.525124 ATGGCCTCCCAACACACGA 61.525 57.895 3.32 0.00 46.14 4.35
448 449 2.668550 GGCCTCCCAACACACGAC 60.669 66.667 0.00 0.00 0.00 4.34
449 450 2.668550 GCCTCCCAACACACGACC 60.669 66.667 0.00 0.00 0.00 4.79
451 452 1.374947 CCTCCCAACACACGACCAT 59.625 57.895 0.00 0.00 0.00 3.55
452 453 0.611200 CCTCCCAACACACGACCATA 59.389 55.000 0.00 0.00 0.00 2.74
454 455 2.551287 CCTCCCAACACACGACCATAAA 60.551 50.000 0.00 0.00 0.00 1.40
455 456 3.343617 CTCCCAACACACGACCATAAAT 58.656 45.455 0.00 0.00 0.00 1.40
457 458 4.907809 TCCCAACACACGACCATAAATTA 58.092 39.130 0.00 0.00 0.00 1.40
458 459 4.696402 TCCCAACACACGACCATAAATTAC 59.304 41.667 0.00 0.00 0.00 1.89
459 460 4.436317 CCCAACACACGACCATAAATTACG 60.436 45.833 0.00 0.00 0.00 3.18
460 461 4.389382 CCAACACACGACCATAAATTACGA 59.611 41.667 0.00 0.00 0.00 3.43
462 463 4.558178 ACACACGACCATAAATTACGACA 58.442 39.130 0.00 0.00 0.00 4.35
463 464 4.989797 ACACACGACCATAAATTACGACAA 59.010 37.500 0.00 0.00 0.00 3.18
464 465 5.466058 ACACACGACCATAAATTACGACAAA 59.534 36.000 0.00 0.00 0.00 2.83
465 466 5.786574 CACACGACCATAAATTACGACAAAC 59.213 40.000 0.00 0.00 0.00 2.93
466 467 5.466058 ACACGACCATAAATTACGACAAACA 59.534 36.000 0.00 0.00 0.00 2.83
467 468 6.013085 CACGACCATAAATTACGACAAACAG 58.987 40.000 0.00 0.00 0.00 3.16
468 469 5.927689 ACGACCATAAATTACGACAAACAGA 59.072 36.000 0.00 0.00 0.00 3.41
469 470 6.592607 ACGACCATAAATTACGACAAACAGAT 59.407 34.615 0.00 0.00 0.00 2.90
470 471 6.899771 CGACCATAAATTACGACAAACAGATG 59.100 38.462 0.00 0.00 0.00 2.90
475 476 4.819105 ATTACGACAAACAGATGGAGGA 57.181 40.909 0.00 0.00 0.00 3.71
492 493 0.634465 GGAGAAGGAGAGAGGGAGGT 59.366 60.000 0.00 0.00 0.00 3.85
496 497 1.828595 GAAGGAGAGAGGGAGGTGAAC 59.171 57.143 0.00 0.00 0.00 3.18
497 498 1.089123 AGGAGAGAGGGAGGTGAACT 58.911 55.000 0.00 0.00 0.00 3.01
505 506 2.504244 GAGGTGAACTCGCGGACG 60.504 66.667 6.13 0.00 36.29 4.79
506 507 4.719369 AGGTGAACTCGCGGACGC 62.719 66.667 6.13 6.63 39.84 5.19
519 520 2.736682 GGACGCGACAAACCGATGG 61.737 63.158 15.93 0.00 0.00 3.51
525 526 1.964373 GACAAACCGATGGCCGTGT 60.964 57.895 0.00 0.00 36.31 4.49
541 542 1.803334 GTGTCACCCACGCATAGAAA 58.197 50.000 0.00 0.00 35.37 2.52
542 543 1.463444 GTGTCACCCACGCATAGAAAC 59.537 52.381 0.00 0.00 35.37 2.78
545 546 0.719465 CACCCACGCATAGAAACGAC 59.281 55.000 0.00 0.00 0.00 4.34
560 562 3.017581 GACAGGGTGGGGAGGCAT 61.018 66.667 0.00 0.00 0.00 4.40
564 566 3.672503 GGGTGGGGAGGCATGGTT 61.673 66.667 0.00 0.00 0.00 3.67
565 567 2.362889 GGTGGGGAGGCATGGTTG 60.363 66.667 0.00 0.00 0.00 3.77
592 594 4.222847 GGTAGAAGCCGCGGGAGG 62.223 72.222 29.38 0.38 0.00 4.30
637 639 0.031994 CCAAACCGGGTTGAAGCTTG 59.968 55.000 33.82 11.76 0.00 4.01
638 640 0.031994 CAAACCGGGTTGAAGCTTGG 59.968 55.000 28.77 0.00 0.00 3.61
639 641 0.106419 AAACCGGGTTGAAGCTTGGA 60.106 50.000 14.22 0.00 0.00 3.53
640 642 0.106419 AACCGGGTTGAAGCTTGGAA 60.106 50.000 12.53 0.00 0.00 3.53
641 643 0.537371 ACCGGGTTGAAGCTTGGAAG 60.537 55.000 2.10 0.00 0.00 3.46
644 646 1.001378 CGGGTTGAAGCTTGGAAGTTG 60.001 52.381 2.10 0.00 0.00 3.16
645 647 2.306847 GGGTTGAAGCTTGGAAGTTGA 58.693 47.619 2.10 0.00 0.00 3.18
649 651 4.354587 GTTGAAGCTTGGAAGTTGACAAG 58.645 43.478 2.10 10.94 45.19 3.16
707 2884 3.655810 GAGCAGGAGCCACCACTCG 62.656 68.421 0.47 0.00 43.56 4.18
756 2933 3.531207 CTGCTCCCGGCTCGATCA 61.531 66.667 0.00 0.00 42.39 2.92
770 2947 1.368969 GATCACGACCGTCGGATCG 60.369 63.158 24.03 24.85 45.59 3.69
854 3047 1.504275 CCCTCCCATCCCATCCCATC 61.504 65.000 0.00 0.00 0.00 3.51
855 3048 1.504275 CCTCCCATCCCATCCCATCC 61.504 65.000 0.00 0.00 0.00 3.51
856 3049 1.465986 TCCCATCCCATCCCATCCC 60.466 63.158 0.00 0.00 0.00 3.85
857 3050 1.779644 CCCATCCCATCCCATCCCA 60.780 63.158 0.00 0.00 0.00 4.37
858 3051 1.151083 CCCATCCCATCCCATCCCAT 61.151 60.000 0.00 0.00 0.00 4.00
928 3121 1.676968 CCTCCACACACCGGAATCA 59.323 57.895 9.46 0.00 30.33 2.57
930 3123 1.340017 CCTCCACACACCGGAATCAAT 60.340 52.381 9.46 0.00 30.33 2.57
931 3124 2.009774 CTCCACACACCGGAATCAATC 58.990 52.381 9.46 0.00 30.33 2.67
934 3127 0.695924 ACACACCGGAATCAATCCCA 59.304 50.000 9.46 0.00 46.39 4.37
937 3130 0.255890 CACCGGAATCAATCCCACCT 59.744 55.000 9.46 0.00 46.39 4.00
938 3131 1.488812 CACCGGAATCAATCCCACCTA 59.511 52.381 9.46 0.00 46.39 3.08
940 3133 1.202770 CCGGAATCAATCCCACCTACC 60.203 57.143 0.00 0.00 46.39 3.18
941 3134 1.202770 CGGAATCAATCCCACCTACCC 60.203 57.143 0.00 0.00 46.39 3.69
942 3135 1.850345 GGAATCAATCCCACCTACCCA 59.150 52.381 0.00 0.00 43.00 4.51
943 3136 2.243736 GGAATCAATCCCACCTACCCAA 59.756 50.000 0.00 0.00 43.00 4.12
944 3137 3.288092 GAATCAATCCCACCTACCCAAC 58.712 50.000 0.00 0.00 0.00 3.77
945 3138 0.996583 TCAATCCCACCTACCCAACC 59.003 55.000 0.00 0.00 0.00 3.77
946 3139 0.033503 CAATCCCACCTACCCAACCC 60.034 60.000 0.00 0.00 0.00 4.11
947 3140 1.219131 AATCCCACCTACCCAACCCC 61.219 60.000 0.00 0.00 0.00 4.95
948 3141 2.440196 ATCCCACCTACCCAACCCCA 62.440 60.000 0.00 0.00 0.00 4.96
949 3142 2.164279 CCCACCTACCCAACCCCAA 61.164 63.158 0.00 0.00 0.00 4.12
950 3143 1.076014 CCACCTACCCAACCCCAAC 59.924 63.158 0.00 0.00 0.00 3.77
951 3144 1.076014 CACCTACCCAACCCCAACC 59.924 63.158 0.00 0.00 0.00 3.77
952 3145 2.164967 ACCTACCCAACCCCAACCC 61.165 63.158 0.00 0.00 0.00 4.11
953 3146 2.768045 CTACCCAACCCCAACCCC 59.232 66.667 0.00 0.00 0.00 4.95
954 3147 2.037568 TACCCAACCCCAACCCCA 60.038 61.111 0.00 0.00 0.00 4.96
955 3148 1.703966 TACCCAACCCCAACCCCAA 60.704 57.895 0.00 0.00 0.00 4.12
956 3149 2.021318 TACCCAACCCCAACCCCAAC 62.021 60.000 0.00 0.00 0.00 3.77
961 3154 4.631740 CCCCAACCCCAACCCCAC 62.632 72.222 0.00 0.00 0.00 4.61
962 3155 3.517497 CCCAACCCCAACCCCACT 61.517 66.667 0.00 0.00 0.00 4.00
988 3181 3.905678 CTCCCTCACCGCCGCTAG 61.906 72.222 0.00 0.00 0.00 3.42
1007 3209 2.894387 GCTCTGCTCCATGGCGAC 60.894 66.667 6.96 0.00 34.52 5.19
1171 3390 4.065281 CTCCGTTCCGTCGCCCTT 62.065 66.667 0.00 0.00 0.00 3.95
1172 3391 3.584868 CTCCGTTCCGTCGCCCTTT 62.585 63.158 0.00 0.00 0.00 3.11
1173 3392 3.116531 CCGTTCCGTCGCCCTTTC 61.117 66.667 0.00 0.00 0.00 2.62
1174 3393 3.116531 CGTTCCGTCGCCCTTTCC 61.117 66.667 0.00 0.00 0.00 3.13
1193 3412 1.152943 CTCCCTCCGATCTGTCCGA 60.153 63.158 0.00 0.00 0.00 4.55
1199 3418 2.562635 CTCCGATCTGTCCGAGTAGAA 58.437 52.381 0.00 0.00 0.00 2.10
1201 3420 2.169978 TCCGATCTGTCCGAGTAGAAGA 59.830 50.000 0.00 0.00 0.00 2.87
1202 3421 2.546368 CCGATCTGTCCGAGTAGAAGAG 59.454 54.545 0.00 0.00 0.00 2.85
1203 3422 2.546368 CGATCTGTCCGAGTAGAAGAGG 59.454 54.545 0.00 0.00 0.00 3.69
1204 3423 3.547746 GATCTGTCCGAGTAGAAGAGGT 58.452 50.000 0.00 0.00 0.00 3.85
1205 3424 2.988570 TCTGTCCGAGTAGAAGAGGTC 58.011 52.381 0.00 0.00 0.00 3.85
1206 3425 2.572556 TCTGTCCGAGTAGAAGAGGTCT 59.427 50.000 0.00 0.00 40.71 3.85
1211 3431 4.571984 GTCCGAGTAGAAGAGGTCTCTAAC 59.428 50.000 0.43 1.36 39.39 2.34
1333 3553 3.503363 GCGCCATGAGTGAGCACC 61.503 66.667 0.00 0.00 0.00 5.01
1334 3554 2.821366 CGCCATGAGTGAGCACCC 60.821 66.667 0.00 0.00 0.00 4.61
1335 3555 2.439156 GCCATGAGTGAGCACCCC 60.439 66.667 0.00 0.00 0.00 4.95
1336 3556 2.273449 CCATGAGTGAGCACCCCC 59.727 66.667 0.00 0.00 0.00 5.40
1368 3588 0.173481 GCGAAATGCCCCTCCTTTTC 59.827 55.000 0.00 0.00 37.76 2.29
1369 3589 1.839424 CGAAATGCCCCTCCTTTTCT 58.161 50.000 0.00 0.00 30.81 2.52
1370 3590 2.171003 CGAAATGCCCCTCCTTTTCTT 58.829 47.619 0.00 0.00 30.81 2.52
1384 3621 6.183360 CCTCCTTTTCTTCTCCTTCTAGCTAG 60.183 46.154 15.01 15.01 0.00 3.42
1447 3690 0.765510 AACTGTTGGTCCCTGTCTCC 59.234 55.000 0.00 0.00 0.00 3.71
1489 3732 2.660064 GGGCCCACGACTCAGTCAT 61.660 63.158 19.95 0.00 32.09 3.06
1496 3739 1.995484 CACGACTCAGTCATGCGAAAT 59.005 47.619 5.45 0.00 32.09 2.17
1505 3748 4.024472 TCAGTCATGCGAAATCGTGAAAAA 60.024 37.500 4.59 0.00 42.22 1.94
1517 3760 7.887709 CGAAATCGTGAAAAATGCAAGATTTAC 59.112 33.333 14.24 9.25 46.64 2.01
1518 3761 8.586570 AAATCGTGAAAAATGCAAGATTTACA 57.413 26.923 13.15 0.00 45.67 2.41
1520 3763 7.795431 TCGTGAAAAATGCAAGATTTACATC 57.205 32.000 0.00 0.00 0.00 3.06
1521 3764 7.592938 TCGTGAAAAATGCAAGATTTACATCT 58.407 30.769 0.00 0.00 42.05 2.90
1546 3798 3.586100 AAAAGTTTGTGCCTTGACGTT 57.414 38.095 0.00 0.00 0.00 3.99
1551 3803 0.463654 TTGTGCCTTGACGTTGCTCT 60.464 50.000 0.00 0.00 0.00 4.09
1561 3813 2.098443 TGACGTTGCTCTTTTGGGAAAC 59.902 45.455 0.00 0.00 0.00 2.78
1580 3836 2.354328 ACCTGGGTTTTGTAGGGATGA 58.646 47.619 0.00 0.00 35.89 2.92
1606 3862 0.390340 ATGTGAATGCGAGCGACAGT 60.390 50.000 0.00 0.00 0.00 3.55
1684 3940 1.990060 CACGGGGAGGATGGACACT 60.990 63.158 0.00 0.00 0.00 3.55
1790 4049 6.780457 AGTGCCAGATTAAATGCTGTATTT 57.220 33.333 8.71 8.71 41.68 1.40
1808 4069 7.373617 TGTATTTTGTGGGCTCATCTCTATA 57.626 36.000 0.00 0.00 0.00 1.31
1812 4080 4.879197 TGTGGGCTCATCTCTATATGTG 57.121 45.455 0.00 0.00 0.00 3.21
1864 4132 3.487536 TGCATGTTCTTAATTTCGTGCG 58.512 40.909 0.00 0.00 43.16 5.34
1890 4158 1.442769 TTCTCAGGCGACTTTGCATC 58.557 50.000 0.00 0.00 40.21 3.91
1915 4183 3.318839 GCACAGCTAAATGAATGCCCATA 59.681 43.478 0.00 0.00 0.00 2.74
1917 4185 5.466819 CACAGCTAAATGAATGCCCATATG 58.533 41.667 0.00 0.00 0.00 1.78
2014 4297 0.394938 TGCGGTGGTTTCTGCTTCTA 59.605 50.000 0.00 0.00 40.06 2.10
2026 4309 6.238593 GGTTTCTGCTTCTAATATTGCCTCAG 60.239 42.308 0.00 0.04 0.00 3.35
2055 4338 8.347004 TGCATTTCTTGTAAATTACTGATGGA 57.653 30.769 4.67 1.23 0.00 3.41
2056 4339 8.970020 TGCATTTCTTGTAAATTACTGATGGAT 58.030 29.630 4.67 0.00 0.00 3.41
2076 4359 5.483231 TGGATAAAGGTCCATTTTGCAATGA 59.517 36.000 0.00 0.00 43.20 2.57
2127 4410 8.384607 TGTTATATGTTGAAGTTGTAGTTGCA 57.615 30.769 0.00 0.00 0.00 4.08
2132 4415 3.552132 TGAAGTTGTAGTTGCAGTCCA 57.448 42.857 0.00 0.00 0.00 4.02
2206 4491 3.953612 TGTTTGTCTGCCAAAGATGTCTT 59.046 39.130 0.00 0.00 43.52 3.01
2328 4623 5.295292 TGCTAATCTGAATAAGCAAGACAGC 59.705 40.000 8.83 0.00 41.74 4.40
2331 4626 4.450082 TCTGAATAAGCAAGACAGCGTA 57.550 40.909 0.00 0.00 40.15 4.42
2369 4664 4.695455 GCACTATGCTACAAAGAAAGGTGA 59.305 41.667 0.00 0.00 40.96 4.02
2370 4665 5.390991 GCACTATGCTACAAAGAAAGGTGAC 60.391 44.000 0.00 0.00 40.96 3.67
2454 4749 8.708742 GTTTTTGCCACTTATTACTCATTTTCC 58.291 33.333 0.00 0.00 0.00 3.13
2455 4750 5.811399 TGCCACTTATTACTCATTTTCCG 57.189 39.130 0.00 0.00 0.00 4.30
2598 4900 5.047188 CACTATGACATGTATAACGTGCCA 58.953 41.667 0.00 0.00 38.65 4.92
2675 4977 5.806366 ATTCAATTGCTTATTTTGCCTGC 57.194 34.783 0.00 0.00 0.00 4.85
2681 4983 5.404466 TTGCTTATTTTGCCTGCTTGTAT 57.596 34.783 0.00 0.00 0.00 2.29
2691 4993 2.229784 GCCTGCTTGTATGTGAAGCTTT 59.770 45.455 0.00 0.00 45.14 3.51
2693 4995 4.232221 CCTGCTTGTATGTGAAGCTTTTG 58.768 43.478 0.00 0.00 45.14 2.44
2730 5032 7.765819 TGTATGTGTATCTCTGTCCTCAAAATG 59.234 37.037 0.00 0.00 0.00 2.32
2789 5091 9.371136 GATCTTATGATCTGTGTTACTGTTTGA 57.629 33.333 10.59 0.00 44.19 2.69
2839 5143 7.807907 GTCTAAAACACCTTGGTATTCATTGTG 59.192 37.037 0.00 0.00 35.01 3.33
2915 5223 4.123506 GTTGCTATCCAAAGGAGCTAGTC 58.876 47.826 0.00 0.00 34.05 2.59
3307 5629 9.638239 TTTGTACTGGATTTCTGAATTTTATGC 57.362 29.630 0.00 0.00 0.00 3.14
3502 5834 9.869757 AGCAACTATGTAAGTTTTTGACTTTTT 57.130 25.926 0.00 0.00 46.61 1.94
3559 5891 4.212214 CACTTCTAAACTGAGACTTGTGGC 59.788 45.833 0.00 0.00 0.00 5.01
3568 5900 1.662629 GAGACTTGTGGCGATGATGTG 59.337 52.381 0.00 0.00 0.00 3.21
3577 5909 0.881118 GCGATGATGTGGTGTTGGTT 59.119 50.000 0.00 0.00 0.00 3.67
3672 6005 5.077134 TCCTATGTCTCTGTTCACACATG 57.923 43.478 0.00 0.00 31.83 3.21
3955 6303 9.283768 TGTTTGTGAGATATGTGTGAAATAAGT 57.716 29.630 0.00 0.00 0.00 2.24
3967 6315 8.698973 TGTGTGAAATAAGTATTTTGGAAGGA 57.301 30.769 0.00 0.00 36.13 3.36
3969 6317 8.244113 GTGTGAAATAAGTATTTTGGAAGGAGG 58.756 37.037 0.00 0.00 36.13 4.30
3970 6318 7.396055 TGTGAAATAAGTATTTTGGAAGGAGGG 59.604 37.037 0.00 0.00 36.13 4.30
3971 6319 7.614192 GTGAAATAAGTATTTTGGAAGGAGGGA 59.386 37.037 0.00 0.00 36.13 4.20
4099 6892 5.163141 TGTGAAACTCTGGTCAATAGGGAAA 60.163 40.000 0.00 0.00 38.04 3.13
4232 7026 2.552315 AGTCAAGTATGTTTTGGTGCGG 59.448 45.455 0.00 0.00 0.00 5.69
4233 7027 2.292292 GTCAAGTATGTTTTGGTGCGGT 59.708 45.455 0.00 0.00 0.00 5.68
4246 7040 1.470805 GGTGCGGTTATTCATTTGCCC 60.471 52.381 0.00 0.00 0.00 5.36
4300 7094 0.671163 ATTTTGCCAGTGCCATTGCG 60.671 50.000 0.00 0.00 41.78 4.85
4438 7241 6.892691 AGAAGTTGTTTAATTGAGCTTCTCG 58.107 36.000 0.00 0.00 37.28 4.04
4439 7242 5.035784 AGTTGTTTAATTGAGCTTCTCGC 57.964 39.130 0.00 0.00 39.57 5.03
4457 7260 3.941483 CTCGCCTTCTCCATGTTTGTTAT 59.059 43.478 0.00 0.00 0.00 1.89
4461 7264 5.447818 CGCCTTCTCCATGTTTGTTATCTTC 60.448 44.000 0.00 0.00 0.00 2.87
4515 7318 4.646040 CCATCATGATTCAGGGTAAGCAAA 59.354 41.667 5.16 0.00 0.00 3.68
4649 7456 7.252708 CACACTATAAAAGCTGCATCAAATGA 58.747 34.615 1.02 0.00 0.00 2.57
4855 7733 3.716353 TGGGCATGGATGTATACACTCTT 59.284 43.478 7.96 0.00 0.00 2.85
4916 7795 1.068434 CGTGCTTGGGATTTGGTTTGT 59.932 47.619 0.00 0.00 0.00 2.83
4993 7872 3.281727 TGCCATCTAAGGATTGGTGAC 57.718 47.619 0.00 0.00 0.00 3.67
5110 7990 3.016736 CAAGGTCAGACAAAACCACACT 58.983 45.455 2.17 0.00 38.06 3.55
5111 7991 2.919228 AGGTCAGACAAAACCACACTC 58.081 47.619 2.17 0.00 38.06 3.51
5112 7992 1.947456 GGTCAGACAAAACCACACTCC 59.053 52.381 2.17 0.00 35.53 3.85
5113 7993 2.639065 GTCAGACAAAACCACACTCCA 58.361 47.619 0.00 0.00 0.00 3.86
5114 7994 2.354821 GTCAGACAAAACCACACTCCAC 59.645 50.000 0.00 0.00 0.00 4.02
5115 7995 2.026729 TCAGACAAAACCACACTCCACA 60.027 45.455 0.00 0.00 0.00 4.17
5116 7996 2.097466 CAGACAAAACCACACTCCACAC 59.903 50.000 0.00 0.00 0.00 3.82
5169 8051 1.224003 AACCCCATCTCCCCATGCTT 61.224 55.000 0.00 0.00 0.00 3.91
5185 8070 4.142337 CCATGCTTACAATGATGTGCTTCA 60.142 41.667 0.00 0.00 40.84 3.02
5312 8202 3.190535 TCTTTCCGCTTAACCTTGCAATC 59.809 43.478 0.00 0.00 0.00 2.67
5323 8213 7.577616 GCTTAACCTTGCAATCTGGAGTATTTT 60.578 37.037 10.01 0.00 0.00 1.82
5398 8288 9.821662 CTTAAATAGAACCTGTTTTTAACTCCG 57.178 33.333 0.00 0.00 0.00 4.63
5420 8315 4.329801 CGCATGTAGCTCTGTCACATTTTA 59.670 41.667 0.00 0.00 42.61 1.52
5427 8322 6.992063 AGCTCTGTCACATTTTAGTATTGG 57.008 37.500 0.00 0.00 0.00 3.16
5512 8407 5.703592 TGTATCTTTGGTCGCAACATACTTT 59.296 36.000 0.00 0.00 0.00 2.66
5513 8408 5.705609 ATCTTTGGTCGCAACATACTTTT 57.294 34.783 0.00 0.00 0.00 2.27
5519 8414 6.176975 TGGTCGCAACATACTTTTGAATAG 57.823 37.500 0.00 0.00 0.00 1.73
5520 8415 5.123186 TGGTCGCAACATACTTTTGAATAGG 59.877 40.000 0.00 0.00 0.00 2.57
5672 8575 1.749033 GGACTCTGATTAGGGCCGG 59.251 63.158 0.00 0.00 0.00 6.13
5673 8576 1.069935 GACTCTGATTAGGGCCGGC 59.930 63.158 21.18 21.18 0.00 6.13
5674 8577 2.384653 GACTCTGATTAGGGCCGGCC 62.385 65.000 38.57 38.57 0.00 6.13
5675 8578 2.040884 TCTGATTAGGGCCGGCCT 60.041 61.111 42.70 30.10 36.10 5.19
5676 8579 2.111878 CTGATTAGGGCCGGCCTG 59.888 66.667 42.70 20.31 36.10 4.85
5677 8580 3.482232 CTGATTAGGGCCGGCCTGG 62.482 68.421 42.70 20.87 42.50 4.45
5678 8581 3.168528 GATTAGGGCCGGCCTGGA 61.169 66.667 42.70 28.25 42.00 3.86
5691 8596 1.153061 CCTGGATGGGCATGCTCAT 59.847 57.895 32.92 32.92 40.32 2.90
5695 8600 2.596631 ATGGGCATGCTCATCGGC 60.597 61.111 27.65 3.01 29.90 5.54
5720 8625 0.391661 TCCAGGCTTCTCATTGCGTC 60.392 55.000 0.00 0.00 0.00 5.19
5755 8660 3.318839 TGGCCAAACTGTTGATCTCTTTG 59.681 43.478 0.61 0.00 36.83 2.77
5767 8673 5.134202 TGATCTCTTTGTTGTCTTAGCGA 57.866 39.130 0.00 0.00 0.00 4.93
5769 8675 5.989168 TGATCTCTTTGTTGTCTTAGCGAAA 59.011 36.000 0.00 0.00 0.00 3.46
5781 8687 2.730090 CTTAGCGAAAGGCGAAGTCGTA 60.730 50.000 2.25 0.00 45.81 3.43
5787 8693 0.109226 AAGGCGAAGTCGTACTCAGC 60.109 55.000 2.25 0.00 42.22 4.26
5793 8699 2.729467 CGAAGTCGTACTCAGCTCCTTG 60.729 54.545 0.00 0.00 34.11 3.61
5794 8700 0.528470 AGTCGTACTCAGCTCCTTGC 59.472 55.000 0.00 0.00 43.29 4.01
5865 8789 3.663025 TGACGATCTGTTTGAAGCATGA 58.337 40.909 0.00 0.00 0.00 3.07
5887 8811 9.060347 CATGAATGGTACTGTATTTTGCTAGAT 57.940 33.333 0.00 0.00 0.00 1.98
5889 8813 8.892723 TGAATGGTACTGTATTTTGCTAGATTG 58.107 33.333 0.00 0.00 0.00 2.67
5899 8823 2.715749 TGCTAGATTGTGGTGATGGG 57.284 50.000 0.00 0.00 0.00 4.00
5939 8863 7.285401 ACTTGTTTTATCATCTGTGTTTGGTCT 59.715 33.333 0.00 0.00 0.00 3.85
5942 8866 7.068103 TGTTTTATCATCTGTGTTTGGTCTGTT 59.932 33.333 0.00 0.00 0.00 3.16
5958 8882 4.455877 GGTCTGTTCAAATCCGTCTTCAAT 59.544 41.667 0.00 0.00 0.00 2.57
6028 8952 0.890542 TCCTGCACTGCATGGTTGAC 60.891 55.000 3.64 0.00 38.13 3.18
6094 9021 2.869503 ATTGGAATCGCCGGACGCTT 62.870 55.000 5.05 6.33 43.23 4.68
6101 9028 2.403586 GCCGGACGCTTTGCATAC 59.596 61.111 5.05 0.00 0.00 2.39
6111 9038 4.261801 ACGCTTTGCATACTTGTCCTAAT 58.738 39.130 0.00 0.00 0.00 1.73
6112 9039 5.424757 ACGCTTTGCATACTTGTCCTAATA 58.575 37.500 0.00 0.00 0.00 0.98
6113 9040 5.878116 ACGCTTTGCATACTTGTCCTAATAA 59.122 36.000 0.00 0.00 0.00 1.40
6114 9041 6.183360 ACGCTTTGCATACTTGTCCTAATAAC 60.183 38.462 0.00 0.00 0.00 1.89
6115 9042 6.037172 CGCTTTGCATACTTGTCCTAATAACT 59.963 38.462 0.00 0.00 0.00 2.24
6116 9043 7.414098 CGCTTTGCATACTTGTCCTAATAACTT 60.414 37.037 0.00 0.00 0.00 2.66
6117 9044 7.910683 GCTTTGCATACTTGTCCTAATAACTTC 59.089 37.037 0.00 0.00 0.00 3.01
6118 9045 8.856153 TTTGCATACTTGTCCTAATAACTTCA 57.144 30.769 0.00 0.00 0.00 3.02
6119 9046 8.856153 TTGCATACTTGTCCTAATAACTTCAA 57.144 30.769 0.00 0.00 0.00 2.69
6120 9047 8.263940 TGCATACTTGTCCTAATAACTTCAAC 57.736 34.615 0.00 0.00 0.00 3.18
6121 9048 7.335924 TGCATACTTGTCCTAATAACTTCAACC 59.664 37.037 0.00 0.00 0.00 3.77
6122 9049 7.553044 GCATACTTGTCCTAATAACTTCAACCT 59.447 37.037 0.00 0.00 0.00 3.50
6123 9050 9.449719 CATACTTGTCCTAATAACTTCAACCTT 57.550 33.333 0.00 0.00 0.00 3.50
6125 9052 8.392372 ACTTGTCCTAATAACTTCAACCTTTC 57.608 34.615 0.00 0.00 0.00 2.62
6126 9053 7.447545 ACTTGTCCTAATAACTTCAACCTTTCC 59.552 37.037 0.00 0.00 0.00 3.13
6127 9054 6.243148 TGTCCTAATAACTTCAACCTTTCCC 58.757 40.000 0.00 0.00 0.00 3.97
6128 9055 6.045106 TGTCCTAATAACTTCAACCTTTCCCT 59.955 38.462 0.00 0.00 0.00 4.20
6129 9056 7.238096 TGTCCTAATAACTTCAACCTTTCCCTA 59.762 37.037 0.00 0.00 0.00 3.53
6130 9057 8.105197 GTCCTAATAACTTCAACCTTTCCCTAA 58.895 37.037 0.00 0.00 0.00 2.69
6131 9058 8.671409 TCCTAATAACTTCAACCTTTCCCTAAA 58.329 33.333 0.00 0.00 0.00 1.85
6132 9059 9.304335 CCTAATAACTTCAACCTTTCCCTAAAA 57.696 33.333 0.00 0.00 0.00 1.52
6164 9091 2.281761 AACCTGGGCTCGCTTGTG 60.282 61.111 0.00 0.00 0.00 3.33
6166 9093 1.764571 AACCTGGGCTCGCTTGTGTA 61.765 55.000 0.00 0.00 0.00 2.90
6167 9094 1.448540 CCTGGGCTCGCTTGTGTAG 60.449 63.158 0.00 0.00 0.00 2.74
6183 9110 1.278985 TGTAGTACTCCCTCCGTTCGA 59.721 52.381 0.00 0.00 0.00 3.71
6186 9113 2.242043 AGTACTCCCTCCGTTCGAAAA 58.758 47.619 0.00 0.00 0.00 2.29
6197 9124 5.220416 CCTCCGTTCGAAAATACTTGTCATC 60.220 44.000 0.00 0.00 0.00 2.92
6198 9125 5.231702 TCCGTTCGAAAATACTTGTCATCA 58.768 37.500 0.00 0.00 0.00 3.07
6240 9167 9.988815 GATGTATCTAGAATTGGATACTTGTGT 57.011 33.333 16.70 0.00 42.55 3.72
6264 9344 5.196695 AGTATCCAAGAAAGCCTTCAATCC 58.803 41.667 0.00 0.00 33.64 3.01
6287 9367 5.120830 CCAAAGTGGATCGTCAGTAAAGAAG 59.879 44.000 0.00 0.00 40.96 2.85
6289 9369 4.810790 AGTGGATCGTCAGTAAAGAAGTG 58.189 43.478 0.00 0.00 0.00 3.16
6294 9374 6.183360 TGGATCGTCAGTAAAGAAGTGGATAG 60.183 42.308 0.00 0.00 0.00 2.08
6326 9406 9.868277 ATCATTTATTTCCTTTTATTTGCGACA 57.132 25.926 0.00 0.00 0.00 4.35
6375 9455 7.819900 ACCATATTAACTGAGTGAAAGAGTGTC 59.180 37.037 0.00 0.00 0.00 3.67
6380 9460 6.656632 AACTGAGTGAAAGAGTGTCTGATA 57.343 37.500 0.00 0.00 0.00 2.15
6390 9470 4.753233 AGAGTGTCTGATAGCACATGAAC 58.247 43.478 0.00 0.00 38.02 3.18
6394 9474 3.264947 GTCTGATAGCACATGAACAGCA 58.735 45.455 0.00 0.00 0.00 4.41
6455 9535 1.202359 ACACCAACACGGCAACAAATC 60.202 47.619 0.00 0.00 39.03 2.17
6487 9567 3.012518 CAGCTGATGGGGACTTAAACTG 58.987 50.000 8.42 0.00 0.00 3.16
6488 9568 2.644798 AGCTGATGGGGACTTAAACTGT 59.355 45.455 0.00 0.00 0.00 3.55
6489 9569 3.074538 AGCTGATGGGGACTTAAACTGTT 59.925 43.478 0.00 0.00 0.00 3.16
6490 9570 3.440522 GCTGATGGGGACTTAAACTGTTC 59.559 47.826 0.00 0.00 0.00 3.18
6491 9571 4.807643 GCTGATGGGGACTTAAACTGTTCT 60.808 45.833 0.00 0.00 0.00 3.01
6492 9572 5.316987 CTGATGGGGACTTAAACTGTTCTT 58.683 41.667 0.00 0.00 0.00 2.52
6493 9573 5.070001 TGATGGGGACTTAAACTGTTCTTG 58.930 41.667 0.00 0.00 0.00 3.02
6494 9574 3.219281 TGGGGACTTAAACTGTTCTTGC 58.781 45.455 0.00 0.00 0.00 4.01
6495 9575 2.225727 GGGGACTTAAACTGTTCTTGCG 59.774 50.000 0.00 0.00 0.00 4.85
6496 9576 3.135994 GGGACTTAAACTGTTCTTGCGA 58.864 45.455 0.00 0.00 0.00 5.10
6497 9577 3.562557 GGGACTTAAACTGTTCTTGCGAA 59.437 43.478 0.00 0.00 0.00 4.70
6498 9578 4.215613 GGGACTTAAACTGTTCTTGCGAAT 59.784 41.667 0.00 0.00 0.00 3.34
6499 9579 5.383130 GGACTTAAACTGTTCTTGCGAATC 58.617 41.667 0.00 0.00 0.00 2.52
6500 9580 5.018695 ACTTAAACTGTTCTTGCGAATCG 57.981 39.130 0.00 0.00 0.00 3.34
6501 9581 4.748102 ACTTAAACTGTTCTTGCGAATCGA 59.252 37.500 6.91 0.00 0.00 3.59
6502 9582 3.521524 AAACTGTTCTTGCGAATCGAC 57.478 42.857 6.91 0.00 0.00 4.20
6503 9583 2.148916 ACTGTTCTTGCGAATCGACA 57.851 45.000 6.91 0.67 0.00 4.35
6504 9584 2.688507 ACTGTTCTTGCGAATCGACAT 58.311 42.857 6.91 0.00 0.00 3.06
6505 9585 3.845178 ACTGTTCTTGCGAATCGACATA 58.155 40.909 6.91 0.00 0.00 2.29
6506 9586 4.433615 ACTGTTCTTGCGAATCGACATAT 58.566 39.130 6.91 0.00 0.00 1.78
6507 9587 4.504461 ACTGTTCTTGCGAATCGACATATC 59.496 41.667 6.91 0.00 0.00 1.63
6508 9588 4.429108 TGTTCTTGCGAATCGACATATCA 58.571 39.130 6.91 0.00 0.00 2.15
6509 9589 4.267690 TGTTCTTGCGAATCGACATATCAC 59.732 41.667 6.91 0.67 0.00 3.06
6510 9590 3.381045 TCTTGCGAATCGACATATCACC 58.619 45.455 6.91 0.00 0.00 4.02
6511 9591 2.148916 TGCGAATCGACATATCACCC 57.851 50.000 6.91 0.00 0.00 4.61
6512 9592 1.686587 TGCGAATCGACATATCACCCT 59.313 47.619 6.91 0.00 0.00 4.34
6513 9593 2.061773 GCGAATCGACATATCACCCTG 58.938 52.381 6.91 0.00 0.00 4.45
6514 9594 2.677199 CGAATCGACATATCACCCTGG 58.323 52.381 0.00 0.00 0.00 4.45
6515 9595 2.610479 CGAATCGACATATCACCCTGGG 60.610 54.545 12.28 12.28 0.00 4.45
6516 9596 0.687354 ATCGACATATCACCCTGGGC 59.313 55.000 14.08 0.00 0.00 5.36
6517 9597 1.300931 CGACATATCACCCTGGGCG 60.301 63.158 14.08 2.68 0.00 6.13
6518 9598 1.830145 GACATATCACCCTGGGCGT 59.170 57.895 14.08 1.06 0.00 5.68
6519 9599 0.180406 GACATATCACCCTGGGCGTT 59.820 55.000 14.08 0.34 0.00 4.84
6520 9600 0.623723 ACATATCACCCTGGGCGTTT 59.376 50.000 14.08 0.00 0.00 3.60
6521 9601 1.024271 CATATCACCCTGGGCGTTTG 58.976 55.000 14.08 3.35 0.00 2.93
6522 9602 0.106719 ATATCACCCTGGGCGTTTGG 60.107 55.000 14.08 0.00 0.00 3.28
6523 9603 2.204865 TATCACCCTGGGCGTTTGGG 62.205 60.000 14.08 0.00 46.07 4.12
6542 9622 0.687427 GTACCCTAACCCGCTACCCA 60.687 60.000 0.00 0.00 0.00 4.51
6547 9627 0.393402 CTAACCCGCTACCCAAACCC 60.393 60.000 0.00 0.00 0.00 4.11
6548 9628 2.182732 TAACCCGCTACCCAAACCCG 62.183 60.000 0.00 0.00 0.00 5.28
6555 9635 1.201414 GCTACCCAAACCCGAATTGTG 59.799 52.381 0.00 0.00 0.00 3.33
6556 9636 1.201414 CTACCCAAACCCGAATTGTGC 59.799 52.381 0.00 0.00 0.00 4.57
6557 9637 0.469144 ACCCAAACCCGAATTGTGCT 60.469 50.000 0.00 0.00 0.00 4.40
6558 9638 0.038343 CCCAAACCCGAATTGTGCTG 60.038 55.000 0.00 0.00 0.00 4.41
6559 9639 0.667184 CCAAACCCGAATTGTGCTGC 60.667 55.000 0.00 0.00 0.00 5.25
6560 9640 0.667184 CAAACCCGAATTGTGCTGCC 60.667 55.000 0.00 0.00 0.00 4.85
6561 9641 1.112315 AAACCCGAATTGTGCTGCCA 61.112 50.000 0.00 0.00 0.00 4.92
6562 9642 1.112315 AACCCGAATTGTGCTGCCAA 61.112 50.000 0.00 1.37 0.00 4.52
6563 9643 1.112315 ACCCGAATTGTGCTGCCAAA 61.112 50.000 7.46 0.00 0.00 3.28
6564 9644 0.247185 CCCGAATTGTGCTGCCAAAT 59.753 50.000 7.46 0.24 0.00 2.32
6565 9645 1.338011 CCCGAATTGTGCTGCCAAATT 60.338 47.619 8.76 8.76 0.00 1.82
6566 9646 2.415776 CCGAATTGTGCTGCCAAATTT 58.584 42.857 9.95 0.00 0.00 1.82
6567 9647 3.583806 CCGAATTGTGCTGCCAAATTTA 58.416 40.909 9.95 0.00 0.00 1.40
6568 9648 4.183101 CCGAATTGTGCTGCCAAATTTAT 58.817 39.130 9.95 0.00 0.00 1.40
6569 9649 5.347342 CCGAATTGTGCTGCCAAATTTATA 58.653 37.500 9.95 0.00 0.00 0.98
6570 9650 5.231991 CCGAATTGTGCTGCCAAATTTATAC 59.768 40.000 9.95 0.00 0.00 1.47
6571 9651 5.231991 CGAATTGTGCTGCCAAATTTATACC 59.768 40.000 9.95 0.00 0.00 2.73
6572 9652 4.464069 TTGTGCTGCCAAATTTATACCC 57.536 40.909 0.00 0.00 0.00 3.69
6573 9653 3.435275 TGTGCTGCCAAATTTATACCCA 58.565 40.909 0.00 0.00 0.00 4.51
6574 9654 3.194542 TGTGCTGCCAAATTTATACCCAC 59.805 43.478 0.00 0.00 0.00 4.61
6575 9655 3.194542 GTGCTGCCAAATTTATACCCACA 59.805 43.478 0.00 0.00 0.00 4.17
6576 9656 3.194542 TGCTGCCAAATTTATACCCACAC 59.805 43.478 0.00 0.00 0.00 3.82
6577 9657 3.447229 GCTGCCAAATTTATACCCACACT 59.553 43.478 0.00 0.00 0.00 3.55
6578 9658 4.642885 GCTGCCAAATTTATACCCACACTA 59.357 41.667 0.00 0.00 0.00 2.74
6579 9659 5.126384 GCTGCCAAATTTATACCCACACTAA 59.874 40.000 0.00 0.00 0.00 2.24
6580 9660 6.350612 GCTGCCAAATTTATACCCACACTAAA 60.351 38.462 0.00 0.00 0.00 1.85
6581 9661 6.926313 TGCCAAATTTATACCCACACTAAAC 58.074 36.000 0.00 0.00 0.00 2.01
6582 9662 6.071278 TGCCAAATTTATACCCACACTAAACC 60.071 38.462 0.00 0.00 0.00 3.27
6583 9663 6.557110 CCAAATTTATACCCACACTAAACCG 58.443 40.000 0.00 0.00 0.00 4.44
6584 9664 6.151480 CCAAATTTATACCCACACTAAACCGT 59.849 38.462 0.00 0.00 0.00 4.83
6585 9665 6.990341 AATTTATACCCACACTAAACCGTC 57.010 37.500 0.00 0.00 0.00 4.79
6633 9713 4.398044 TCATTTCCTGGCTATTCGGTTTTC 59.602 41.667 0.00 0.00 0.00 2.29
6665 9745 2.490509 CTGGAAAACCCGAAATACCCAC 59.509 50.000 0.00 0.00 37.93 4.61
6666 9746 2.158505 TGGAAAACCCGAAATACCCACA 60.159 45.455 0.00 0.00 37.93 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.348411 AGACAAGGTGTTTCACTGGG 57.652 50.000 0.06 0.00 34.40 4.45
3 4 2.286418 GCGAAGACAAGGTGTTTCACTG 60.286 50.000 0.00 0.00 34.40 3.66
4 5 1.940613 GCGAAGACAAGGTGTTTCACT 59.059 47.619 0.00 0.00 34.40 3.41
5 6 1.668751 TGCGAAGACAAGGTGTTTCAC 59.331 47.619 0.00 0.00 0.00 3.18
6 7 1.939934 CTGCGAAGACAAGGTGTTTCA 59.060 47.619 0.00 0.00 0.00 2.69
7 8 1.940613 ACTGCGAAGACAAGGTGTTTC 59.059 47.619 0.00 0.00 0.00 2.78
8 9 2.038387 ACTGCGAAGACAAGGTGTTT 57.962 45.000 0.00 0.00 0.00 2.83
9 10 2.902705 TACTGCGAAGACAAGGTGTT 57.097 45.000 0.00 0.00 0.00 3.32
10 11 4.737855 ATATACTGCGAAGACAAGGTGT 57.262 40.909 0.00 0.00 0.00 4.16
13 14 5.915758 GTCACTATATACTGCGAAGACAAGG 59.084 44.000 0.00 0.00 0.00 3.61
14 15 6.495706 TGTCACTATATACTGCGAAGACAAG 58.504 40.000 0.00 0.00 31.36 3.16
15 16 6.445357 TGTCACTATATACTGCGAAGACAA 57.555 37.500 0.00 0.00 31.36 3.18
16 17 6.635030 ATGTCACTATATACTGCGAAGACA 57.365 37.500 0.00 0.00 37.80 3.41
18 19 6.923508 CCAAATGTCACTATATACTGCGAAGA 59.076 38.462 0.00 0.00 0.00 2.87
19 20 6.346919 GCCAAATGTCACTATATACTGCGAAG 60.347 42.308 0.00 0.00 0.00 3.79
21 22 4.988540 GCCAAATGTCACTATATACTGCGA 59.011 41.667 0.00 0.00 0.00 5.10
22 23 4.152402 GGCCAAATGTCACTATATACTGCG 59.848 45.833 0.00 0.00 0.00 5.18
23 24 5.308825 AGGCCAAATGTCACTATATACTGC 58.691 41.667 5.01 0.00 0.00 4.40
24 25 6.767902 ACAAGGCCAAATGTCACTATATACTG 59.232 38.462 5.01 0.00 0.00 2.74
25 26 6.900194 ACAAGGCCAAATGTCACTATATACT 58.100 36.000 5.01 0.00 0.00 2.12
26 27 6.204882 GGACAAGGCCAAATGTCACTATATAC 59.795 42.308 27.24 11.52 46.07 1.47
27 28 6.296026 GGACAAGGCCAAATGTCACTATATA 58.704 40.000 27.24 0.00 46.07 0.86
29 30 4.523083 GGACAAGGCCAAATGTCACTATA 58.477 43.478 27.24 0.00 46.07 1.31
30 31 3.356290 GGACAAGGCCAAATGTCACTAT 58.644 45.455 27.24 1.34 46.07 2.12
33 34 0.603065 GGGACAAGGCCAAATGTCAC 59.397 55.000 27.24 23.41 46.07 3.67
34 35 0.187117 TGGGACAAGGCCAAATGTCA 59.813 50.000 27.24 13.31 46.07 3.58
47 48 6.548321 AGTACTGGAAAAATGTATTGGGACA 58.452 36.000 0.00 0.00 0.00 4.02
48 49 7.312899 CAAGTACTGGAAAAATGTATTGGGAC 58.687 38.462 0.00 0.00 0.00 4.46
65 66 2.096268 CGTGTTCACATGCCAAGTACTG 60.096 50.000 0.00 0.00 0.00 2.74
67 68 1.871039 ACGTGTTCACATGCCAAGTAC 59.129 47.619 0.00 0.00 36.36 2.73
69 70 1.388547 AACGTGTTCACATGCCAAGT 58.611 45.000 0.00 0.00 36.36 3.16
70 71 2.289274 TGTAACGTGTTCACATGCCAAG 59.711 45.455 0.00 0.00 36.36 3.61
71 72 2.032302 GTGTAACGTGTTCACATGCCAA 59.968 45.455 11.36 0.00 36.36 4.52
121 122 1.064240 ACATGAGGATGGATGCAGCAA 60.064 47.619 3.51 0.00 33.39 3.91
124 125 1.509703 CGACATGAGGATGGATGCAG 58.490 55.000 0.00 0.00 33.39 4.41
230 231 4.363999 CCCTCTCATATTTCTCGTGTGTC 58.636 47.826 0.00 0.00 0.00 3.67
236 237 2.289320 CCTGCCCCTCTCATATTTCTCG 60.289 54.545 0.00 0.00 0.00 4.04
238 239 2.061061 CCCTGCCCCTCTCATATTTCT 58.939 52.381 0.00 0.00 0.00 2.52
243 244 1.237163 CTCCCCTGCCCCTCTCATA 59.763 63.158 0.00 0.00 0.00 2.15
258 259 3.551407 GACATCGCCTCCCCCTCC 61.551 72.222 0.00 0.00 0.00 4.30
259 260 3.917760 CGACATCGCCTCCCCCTC 61.918 72.222 0.00 0.00 0.00 4.30
260 261 4.779733 ACGACATCGCCTCCCCCT 62.780 66.667 0.14 0.00 44.43 4.79
273 274 0.094730 CGCCGAGGAATGAAAACGAC 59.905 55.000 0.00 0.00 0.00 4.34
275 276 1.006832 ATCGCCGAGGAATGAAAACG 58.993 50.000 0.00 0.00 0.00 3.60
280 281 0.033920 CCATCATCGCCGAGGAATGA 59.966 55.000 5.27 0.00 0.00 2.57
281 282 1.572085 GCCATCATCGCCGAGGAATG 61.572 60.000 5.27 5.01 0.00 2.67
282 283 1.302033 GCCATCATCGCCGAGGAAT 60.302 57.895 5.27 0.00 0.00 3.01
283 284 2.108976 GCCATCATCGCCGAGGAA 59.891 61.111 5.27 0.00 0.00 3.36
291 292 3.640000 GTTCGCCGGCCATCATCG 61.640 66.667 23.46 4.61 0.00 3.84
304 305 0.669318 ACTGTGCCATGTACCGTTCG 60.669 55.000 0.00 0.00 0.00 3.95
310 311 1.635663 GCCACGACTGTGCCATGTAC 61.636 60.000 0.00 0.00 45.04 2.90
315 316 4.314440 GAGGCCACGACTGTGCCA 62.314 66.667 5.01 0.00 45.04 4.92
318 319 4.742201 CGGGAGGCCACGACTGTG 62.742 72.222 5.01 0.00 46.00 3.66
353 354 1.882352 GCCTCCCTCATGTTTTGTCGT 60.882 52.381 0.00 0.00 0.00 4.34
356 357 0.400213 TCGCCTCCCTCATGTTTTGT 59.600 50.000 0.00 0.00 0.00 2.83
361 362 0.107508 CAACATCGCCTCCCTCATGT 60.108 55.000 0.00 0.00 0.00 3.21
362 363 0.107508 ACAACATCGCCTCCCTCATG 60.108 55.000 0.00 0.00 0.00 3.07
365 366 1.468914 GAAAACAACATCGCCTCCCTC 59.531 52.381 0.00 0.00 0.00 4.30
367 368 1.243902 TGAAAACAACATCGCCTCCC 58.756 50.000 0.00 0.00 0.00 4.30
368 369 2.159379 GGATGAAAACAACATCGCCTCC 60.159 50.000 0.00 0.00 43.24 4.30
369 370 2.159379 GGGATGAAAACAACATCGCCTC 60.159 50.000 0.00 0.00 45.44 4.70
370 371 1.818674 GGGATGAAAACAACATCGCCT 59.181 47.619 0.00 0.00 45.44 5.52
374 375 4.394920 TCGCTAAGGGATGAAAACAACATC 59.605 41.667 0.00 0.00 42.07 3.06
375 376 4.331968 TCGCTAAGGGATGAAAACAACAT 58.668 39.130 0.00 0.00 0.00 2.71
376 377 3.745799 TCGCTAAGGGATGAAAACAACA 58.254 40.909 0.00 0.00 0.00 3.33
386 387 0.326264 GGCCATCATCGCTAAGGGAT 59.674 55.000 0.00 0.00 35.61 3.85
387 388 1.754745 GGCCATCATCGCTAAGGGA 59.245 57.895 0.00 0.00 0.00 4.20
388 389 1.669115 CGGCCATCATCGCTAAGGG 60.669 63.158 2.24 0.00 0.00 3.95
389 390 1.669115 CCGGCCATCATCGCTAAGG 60.669 63.158 2.24 0.00 0.00 2.69
390 391 1.069765 ACCGGCCATCATCGCTAAG 59.930 57.895 0.00 0.00 0.00 2.18
392 393 1.681486 TTCACCGGCCATCATCGCTA 61.681 55.000 0.00 0.00 0.00 4.26
393 394 3.030168 TTCACCGGCCATCATCGCT 62.030 57.895 0.00 0.00 0.00 4.93
395 396 1.449423 TGTTCACCGGCCATCATCG 60.449 57.895 0.00 0.00 0.00 3.84
396 397 0.392998 AGTGTTCACCGGCCATCATC 60.393 55.000 0.00 0.00 0.00 2.92
397 398 0.908910 TAGTGTTCACCGGCCATCAT 59.091 50.000 0.00 0.00 0.00 2.45
400 401 0.398696 TTGTAGTGTTCACCGGCCAT 59.601 50.000 0.00 0.00 0.00 4.40
401 402 0.250124 CTTGTAGTGTTCACCGGCCA 60.250 55.000 0.00 0.00 0.00 5.36
402 403 1.574702 GCTTGTAGTGTTCACCGGCC 61.575 60.000 0.00 0.00 0.00 6.13
403 404 1.574702 GGCTTGTAGTGTTCACCGGC 61.575 60.000 0.00 0.00 0.00 6.13
404 405 0.250124 TGGCTTGTAGTGTTCACCGG 60.250 55.000 0.00 0.00 0.00 5.28
405 406 1.808411 ATGGCTTGTAGTGTTCACCG 58.192 50.000 0.00 0.00 0.00 4.94
406 407 3.877508 GGATATGGCTTGTAGTGTTCACC 59.122 47.826 0.00 0.00 0.00 4.02
407 408 4.513442 TGGATATGGCTTGTAGTGTTCAC 58.487 43.478 0.00 0.00 0.00 3.18
408 409 4.835284 TGGATATGGCTTGTAGTGTTCA 57.165 40.909 0.00 0.00 0.00 3.18
409 410 4.516698 CCATGGATATGGCTTGTAGTGTTC 59.483 45.833 5.56 0.00 46.84 3.18
410 411 4.464008 CCATGGATATGGCTTGTAGTGTT 58.536 43.478 5.56 0.00 46.84 3.32
411 412 4.090761 CCATGGATATGGCTTGTAGTGT 57.909 45.455 5.56 0.00 46.84 3.55
422 423 1.145531 TGTTGGGAGGCCATGGATATG 59.854 52.381 18.40 0.00 0.00 1.78
424 425 0.550914 GTGTTGGGAGGCCATGGATA 59.449 55.000 18.40 0.00 0.00 2.59
425 426 1.307647 GTGTTGGGAGGCCATGGAT 59.692 57.895 18.40 1.89 0.00 3.41
426 427 2.159490 TGTGTTGGGAGGCCATGGA 61.159 57.895 18.40 0.00 0.00 3.41
427 428 1.978617 GTGTGTTGGGAGGCCATGG 60.979 63.158 7.63 7.63 0.00 3.66
428 429 2.334946 CGTGTGTTGGGAGGCCATG 61.335 63.158 5.01 0.00 0.00 3.66
431 432 2.668550 GTCGTGTGTTGGGAGGCC 60.669 66.667 0.00 0.00 0.00 5.19
432 433 2.668550 GGTCGTGTGTTGGGAGGC 60.669 66.667 0.00 0.00 0.00 4.70
433 434 0.611200 TATGGTCGTGTGTTGGGAGG 59.389 55.000 0.00 0.00 0.00 4.30
434 435 2.465860 TTATGGTCGTGTGTTGGGAG 57.534 50.000 0.00 0.00 0.00 4.30
435 436 2.932855 TTTATGGTCGTGTGTTGGGA 57.067 45.000 0.00 0.00 0.00 4.37
436 437 4.436317 CGTAATTTATGGTCGTGTGTTGGG 60.436 45.833 0.00 0.00 0.00 4.12
437 438 4.389382 TCGTAATTTATGGTCGTGTGTTGG 59.611 41.667 0.00 0.00 0.00 3.77
438 439 5.107414 TGTCGTAATTTATGGTCGTGTGTTG 60.107 40.000 0.00 0.00 0.00 3.33
440 441 4.558178 TGTCGTAATTTATGGTCGTGTGT 58.442 39.130 0.00 0.00 0.00 3.72
441 442 5.518529 TTGTCGTAATTTATGGTCGTGTG 57.481 39.130 0.00 0.00 0.00 3.82
442 443 5.466058 TGTTTGTCGTAATTTATGGTCGTGT 59.534 36.000 0.00 0.00 0.00 4.49
444 445 5.927689 TCTGTTTGTCGTAATTTATGGTCGT 59.072 36.000 0.00 0.00 0.00 4.34
446 447 7.065324 TCCATCTGTTTGTCGTAATTTATGGTC 59.935 37.037 0.00 0.00 33.48 4.02
447 448 6.882140 TCCATCTGTTTGTCGTAATTTATGGT 59.118 34.615 0.00 0.00 33.48 3.55
448 449 7.315247 TCCATCTGTTTGTCGTAATTTATGG 57.685 36.000 0.00 0.00 33.10 2.74
449 450 7.279981 TCCTCCATCTGTTTGTCGTAATTTATG 59.720 37.037 0.00 0.00 0.00 1.90
451 452 6.703319 TCCTCCATCTGTTTGTCGTAATTTA 58.297 36.000 0.00 0.00 0.00 1.40
452 453 5.556915 TCCTCCATCTGTTTGTCGTAATTT 58.443 37.500 0.00 0.00 0.00 1.82
454 455 4.466370 TCTCCTCCATCTGTTTGTCGTAAT 59.534 41.667 0.00 0.00 0.00 1.89
455 456 3.830178 TCTCCTCCATCTGTTTGTCGTAA 59.170 43.478 0.00 0.00 0.00 3.18
457 458 2.248248 TCTCCTCCATCTGTTTGTCGT 58.752 47.619 0.00 0.00 0.00 4.34
458 459 3.257393 CTTCTCCTCCATCTGTTTGTCG 58.743 50.000 0.00 0.00 0.00 4.35
459 460 3.261897 TCCTTCTCCTCCATCTGTTTGTC 59.738 47.826 0.00 0.00 0.00 3.18
460 461 3.251484 TCCTTCTCCTCCATCTGTTTGT 58.749 45.455 0.00 0.00 0.00 2.83
462 463 3.774216 CTCTCCTTCTCCTCCATCTGTTT 59.226 47.826 0.00 0.00 0.00 2.83
463 464 3.012274 TCTCTCCTTCTCCTCCATCTGTT 59.988 47.826 0.00 0.00 0.00 3.16
464 465 2.584965 TCTCTCCTTCTCCTCCATCTGT 59.415 50.000 0.00 0.00 0.00 3.41
465 466 3.225104 CTCTCTCCTTCTCCTCCATCTG 58.775 54.545 0.00 0.00 0.00 2.90
466 467 2.177669 CCTCTCTCCTTCTCCTCCATCT 59.822 54.545 0.00 0.00 0.00 2.90
467 468 2.597455 CCTCTCTCCTTCTCCTCCATC 58.403 57.143 0.00 0.00 0.00 3.51
468 469 1.220236 CCCTCTCTCCTTCTCCTCCAT 59.780 57.143 0.00 0.00 0.00 3.41
469 470 0.633921 CCCTCTCTCCTTCTCCTCCA 59.366 60.000 0.00 0.00 0.00 3.86
470 471 0.930726 TCCCTCTCTCCTTCTCCTCC 59.069 60.000 0.00 0.00 0.00 4.30
475 476 1.388174 TCACCTCCCTCTCTCCTTCT 58.612 55.000 0.00 0.00 0.00 2.85
503 504 3.419759 GCCATCGGTTTGTCGCGT 61.420 61.111 5.77 0.00 0.00 6.01
505 506 4.160635 CGGCCATCGGTTTGTCGC 62.161 66.667 2.24 0.00 34.75 5.19
506 507 2.740826 ACGGCCATCGGTTTGTCG 60.741 61.111 2.24 0.00 44.45 4.35
525 526 0.604073 TCGTTTCTATGCGTGGGTGA 59.396 50.000 0.00 0.00 0.00 4.02
534 535 1.406887 CCCCACCCTGTCGTTTCTATG 60.407 57.143 0.00 0.00 0.00 2.23
535 536 0.909623 CCCCACCCTGTCGTTTCTAT 59.090 55.000 0.00 0.00 0.00 1.98
537 538 1.460689 TCCCCACCCTGTCGTTTCT 60.461 57.895 0.00 0.00 0.00 2.52
538 539 1.003718 CTCCCCACCCTGTCGTTTC 60.004 63.158 0.00 0.00 0.00 2.78
545 546 4.133373 CCATGCCTCCCCACCCTG 62.133 72.222 0.00 0.00 0.00 4.45
597 599 1.153147 GAACCATTCTCCCTCGCCC 60.153 63.158 0.00 0.00 0.00 6.13
598 600 0.744771 GTGAACCATTCTCCCTCGCC 60.745 60.000 0.00 0.00 0.00 5.54
624 626 1.001378 CAACTTCCAAGCTTCAACCCG 60.001 52.381 0.00 0.00 0.00 5.28
625 627 2.034685 GTCAACTTCCAAGCTTCAACCC 59.965 50.000 0.00 0.00 0.00 4.11
627 629 4.354587 CTTGTCAACTTCCAAGCTTCAAC 58.645 43.478 0.00 0.00 32.46 3.18
637 639 0.534203 TCCACGGCTTGTCAACTTCC 60.534 55.000 0.00 0.00 0.00 3.46
638 640 1.197721 CATCCACGGCTTGTCAACTTC 59.802 52.381 0.00 0.00 0.00 3.01
639 641 1.238439 CATCCACGGCTTGTCAACTT 58.762 50.000 0.00 0.00 0.00 2.66
640 642 0.108585 ACATCCACGGCTTGTCAACT 59.891 50.000 0.00 0.00 0.00 3.16
641 643 1.463444 GTACATCCACGGCTTGTCAAC 59.537 52.381 0.00 0.00 0.00 3.18
644 646 1.693083 GCGTACATCCACGGCTTGTC 61.693 60.000 0.00 0.00 42.18 3.18
645 647 1.740296 GCGTACATCCACGGCTTGT 60.740 57.895 0.00 0.00 42.18 3.16
650 652 1.299926 GCTAGGCGTACATCCACGG 60.300 63.158 4.24 0.00 42.18 4.94
651 653 0.032130 ATGCTAGGCGTACATCCACG 59.968 55.000 4.24 0.00 44.71 4.94
854 3047 0.751277 TGCGTGCTTTATGGGATGGG 60.751 55.000 0.00 0.00 0.00 4.00
855 3048 0.664761 CTGCGTGCTTTATGGGATGG 59.335 55.000 0.00 0.00 0.00 3.51
856 3049 0.029834 GCTGCGTGCTTTATGGGATG 59.970 55.000 0.00 0.00 38.95 3.51
857 3050 1.439353 CGCTGCGTGCTTTATGGGAT 61.439 55.000 14.93 0.00 40.11 3.85
858 3051 2.106074 CGCTGCGTGCTTTATGGGA 61.106 57.895 14.93 0.00 40.11 4.37
928 3121 1.219131 GGGGTTGGGTAGGTGGGATT 61.219 60.000 0.00 0.00 0.00 3.01
930 3123 2.204182 GGGGTTGGGTAGGTGGGA 60.204 66.667 0.00 0.00 0.00 4.37
931 3124 2.164279 TTGGGGTTGGGTAGGTGGG 61.164 63.158 0.00 0.00 0.00 4.61
934 3127 2.164967 GGGTTGGGGTTGGGTAGGT 61.165 63.158 0.00 0.00 0.00 3.08
937 3130 1.703966 TTGGGGTTGGGGTTGGGTA 60.704 57.895 0.00 0.00 0.00 3.69
938 3131 3.036959 TTGGGGTTGGGGTTGGGT 61.037 61.111 0.00 0.00 0.00 4.51
940 3133 2.525629 GGTTGGGGTTGGGGTTGG 60.526 66.667 0.00 0.00 0.00 3.77
941 3134 2.525629 GGGTTGGGGTTGGGGTTG 60.526 66.667 0.00 0.00 0.00 3.77
942 3135 3.852421 GGGGTTGGGGTTGGGGTT 61.852 66.667 0.00 0.00 0.00 4.11
944 3137 4.631740 GTGGGGTTGGGGTTGGGG 62.632 72.222 0.00 0.00 0.00 4.96
945 3138 3.517497 AGTGGGGTTGGGGTTGGG 61.517 66.667 0.00 0.00 0.00 4.12
946 3139 2.117423 GAGTGGGGTTGGGGTTGG 59.883 66.667 0.00 0.00 0.00 3.77
947 3140 2.117423 GGAGTGGGGTTGGGGTTG 59.883 66.667 0.00 0.00 0.00 3.77
948 3141 3.190391 GGGAGTGGGGTTGGGGTT 61.190 66.667 0.00 0.00 0.00 4.11
949 3142 4.542627 TGGGAGTGGGGTTGGGGT 62.543 66.667 0.00 0.00 0.00 4.95
950 3143 3.979497 GTGGGAGTGGGGTTGGGG 61.979 72.222 0.00 0.00 0.00 4.96
951 3144 2.858974 AGTGGGAGTGGGGTTGGG 60.859 66.667 0.00 0.00 0.00 4.12
952 3145 2.757077 GAGTGGGAGTGGGGTTGG 59.243 66.667 0.00 0.00 0.00 3.77
953 3146 2.757077 GGAGTGGGAGTGGGGTTG 59.243 66.667 0.00 0.00 0.00 3.77
954 3147 2.531942 GGGAGTGGGAGTGGGGTT 60.532 66.667 0.00 0.00 0.00 4.11
955 3148 3.542602 AGGGAGTGGGAGTGGGGT 61.543 66.667 0.00 0.00 0.00 4.95
956 3149 2.689034 GAGGGAGTGGGAGTGGGG 60.689 72.222 0.00 0.00 0.00 4.96
961 3154 1.687493 GTGAGGGAGGGAGTGGGAG 60.687 68.421 0.00 0.00 0.00 4.30
962 3155 2.450243 GTGAGGGAGGGAGTGGGA 59.550 66.667 0.00 0.00 0.00 4.37
984 3177 1.071128 CATGGAGCAGAGCCCTAGC 59.929 63.158 0.00 0.00 40.32 3.42
985 3178 1.753470 CCATGGAGCAGAGCCCTAG 59.247 63.158 5.56 0.00 0.00 3.02
986 3179 2.446848 GCCATGGAGCAGAGCCCTA 61.447 63.158 18.40 0.00 0.00 3.53
987 3180 3.806667 GCCATGGAGCAGAGCCCT 61.807 66.667 18.40 0.00 0.00 5.19
991 3184 2.584418 CGTCGCCATGGAGCAGAG 60.584 66.667 18.40 0.25 0.00 3.35
1076 3293 3.536917 CGGCCGAGATGTAGCCCA 61.537 66.667 24.07 0.00 44.13 5.36
1089 3306 4.778143 ATGAGGTTGACGCCGGCC 62.778 66.667 23.46 8.57 0.00 6.13
1159 3376 2.926242 AGGGAAAGGGCGACGGAA 60.926 61.111 0.00 0.00 0.00 4.30
1171 3390 0.397254 GACAGATCGGAGGGAGGGAA 60.397 60.000 0.00 0.00 0.00 3.97
1172 3391 1.230497 GACAGATCGGAGGGAGGGA 59.770 63.158 0.00 0.00 0.00 4.20
1173 3392 1.834822 GGACAGATCGGAGGGAGGG 60.835 68.421 0.00 0.00 0.00 4.30
1174 3393 2.196925 CGGACAGATCGGAGGGAGG 61.197 68.421 0.00 0.00 0.00 4.30
1193 3412 3.281158 GCCGTTAGAGACCTCTTCTACT 58.719 50.000 4.73 0.00 40.93 2.57
1199 3418 1.753463 CCGGCCGTTAGAGACCTCT 60.753 63.158 26.12 4.81 43.40 3.69
1201 3420 3.459063 GCCGGCCGTTAGAGACCT 61.459 66.667 26.12 0.00 0.00 3.85
1202 3421 4.867599 CGCCGGCCGTTAGAGACC 62.868 72.222 26.12 0.49 0.00 3.85
1203 3422 4.867599 CCGCCGGCCGTTAGAGAC 62.868 72.222 26.12 3.05 34.38 3.36
1239 3459 1.202639 TCGCTGTCTGGAAGCAAAGAA 60.203 47.619 0.00 0.00 40.86 2.52
1240 3460 0.392706 TCGCTGTCTGGAAGCAAAGA 59.607 50.000 0.00 0.00 40.86 2.52
1241 3461 0.795085 CTCGCTGTCTGGAAGCAAAG 59.205 55.000 0.00 0.00 40.86 2.77
1242 3462 1.230635 GCTCGCTGTCTGGAAGCAAA 61.231 55.000 0.00 0.00 40.86 3.68
1243 3463 1.669115 GCTCGCTGTCTGGAAGCAA 60.669 57.895 0.00 0.00 40.86 3.91
1244 3464 2.047844 GCTCGCTGTCTGGAAGCA 60.048 61.111 0.00 0.00 40.86 3.91
1368 3588 3.322191 ACCCCTAGCTAGAAGGAGAAG 57.678 52.381 27.31 10.93 36.08 2.85
1369 3589 3.775316 CAAACCCCTAGCTAGAAGGAGAA 59.225 47.826 27.31 0.00 36.08 2.87
1370 3590 3.375699 CAAACCCCTAGCTAGAAGGAGA 58.624 50.000 27.31 0.00 36.08 3.71
1384 3621 1.125093 CCTGGGAAAACCCAAACCCC 61.125 60.000 9.33 0.00 41.44 4.95
1447 3690 0.890683 GCAAACATCAAGGGACCCAG 59.109 55.000 14.60 4.82 0.00 4.45
1481 3724 2.262211 TCACGATTTCGCATGACTGAG 58.738 47.619 0.00 0.00 44.43 3.35
1486 3729 3.607641 GCATTTTTCACGATTTCGCATGA 59.392 39.130 0.00 0.00 44.43 3.07
1489 3732 3.005341 TGCATTTTTCACGATTTCGCA 57.995 38.095 0.00 0.00 44.43 5.10
1496 3739 7.592938 AGATGTAAATCTTGCATTTTTCACGA 58.407 30.769 0.00 0.00 36.07 4.35
1530 3777 0.100503 AGCAACGTCAAGGCACAAAC 59.899 50.000 0.00 0.00 0.00 2.93
1531 3778 0.380378 GAGCAACGTCAAGGCACAAA 59.620 50.000 0.00 0.00 0.00 2.83
1546 3798 1.703411 CCAGGTTTCCCAAAAGAGCA 58.297 50.000 0.00 0.00 0.00 4.26
1551 3803 2.913617 ACAAAACCCAGGTTTCCCAAAA 59.086 40.909 14.95 0.00 46.22 2.44
1561 3813 3.290710 CATCATCCCTACAAAACCCAGG 58.709 50.000 0.00 0.00 0.00 4.45
1580 3836 1.402968 GCTCGCATTCACATTGTCCAT 59.597 47.619 0.00 0.00 0.00 3.41
1617 3873 3.385111 GTCCTCCATCTCCTCGTTGTTAT 59.615 47.826 0.00 0.00 0.00 1.89
1618 3874 2.758979 GTCCTCCATCTCCTCGTTGTTA 59.241 50.000 0.00 0.00 0.00 2.41
1619 3875 1.550976 GTCCTCCATCTCCTCGTTGTT 59.449 52.381 0.00 0.00 0.00 2.83
1684 3940 0.400213 CCTCCACCAGGTACTTGCAA 59.600 55.000 0.00 0.00 34.60 4.08
1790 4049 4.901250 TCACATATAGAGATGAGCCCACAA 59.099 41.667 0.00 0.00 0.00 3.33
1808 4069 5.921976 CACATGTACAGCAAACAATTCACAT 59.078 36.000 0.00 0.00 0.00 3.21
1812 4080 6.915300 TGTTACACATGTACAGCAAACAATTC 59.085 34.615 0.00 0.00 0.00 2.17
1837 4105 7.243487 CACGAAATTAAGAACATGCAGTGTAT 58.757 34.615 0.00 0.00 41.14 2.29
1847 4115 2.288186 TGCACGCACGAAATTAAGAACA 59.712 40.909 0.00 0.00 0.00 3.18
1864 4132 1.160137 AGTCGCCTGAGAAAATGCAC 58.840 50.000 0.00 0.00 0.00 4.57
1890 4158 3.184541 GGCATTCATTTAGCTGTGCAAG 58.815 45.455 0.00 0.00 34.45 4.01
1970 4242 5.685075 GCTGTATATGGACAAGGCACTACTT 60.685 44.000 0.00 0.00 38.49 2.24
1972 4244 4.058817 GCTGTATATGGACAAGGCACTAC 58.941 47.826 0.00 0.00 38.49 2.73
2055 4338 8.866970 ATTTTCATTGCAAAATGGACCTTTAT 57.133 26.923 1.71 0.00 35.15 1.40
2056 4339 9.956640 ATATTTTCATTGCAAAATGGACCTTTA 57.043 25.926 1.71 0.00 36.75 1.85
2076 4359 7.643569 TCCACACATCAGCACAATATATTTT 57.356 32.000 0.00 0.00 0.00 1.82
2127 4410 1.068083 CGCCATCGCATACTGGACT 59.932 57.895 0.00 0.00 34.24 3.85
2206 4491 6.484643 GCCAGAGCATTCAAATAACTCAGATA 59.515 38.462 0.00 0.00 39.53 1.98
2328 4623 1.066858 TGCAGAGGAGAAAAGCCTACG 60.067 52.381 0.00 0.00 35.44 3.51
2331 4626 1.063183 AGTGCAGAGGAGAAAAGCCT 58.937 50.000 0.00 0.00 38.81 4.58
2369 4664 5.753721 AAATAGGTGCTGAAAGAGAGAGT 57.246 39.130 0.00 0.00 34.07 3.24
2370 4665 6.634805 TGTAAATAGGTGCTGAAAGAGAGAG 58.365 40.000 0.00 0.00 34.07 3.20
2415 4710 2.094099 GGCAAAAACATTTATGCAGCGG 59.906 45.455 0.00 0.00 40.51 5.52
2454 4749 2.125106 GGCAGGGCCTCTAACACG 60.125 66.667 0.95 0.00 46.69 4.49
2544 4846 1.001378 ACAAACCGTCATGCTTTGAGC 60.001 47.619 10.23 0.00 42.82 4.26
2566 4868 9.698309 GTTATACATGTCATAGTGCTTAGATGT 57.302 33.333 0.00 0.00 0.00 3.06
2675 4977 5.344128 GCACATCAAAAGCTTCACATACAAG 59.656 40.000 0.00 0.00 0.00 3.16
2681 4983 2.689471 AGTGCACATCAAAAGCTTCACA 59.311 40.909 21.04 0.00 0.00 3.58
2691 4993 3.475575 ACACATACACAGTGCACATCAA 58.524 40.909 21.04 0.09 40.59 2.57
2693 4995 5.111989 AGATACACATACACAGTGCACATC 58.888 41.667 21.04 8.36 40.59 3.06
2753 5055 4.199432 GATCATAAGATCGGGACTGCAT 57.801 45.455 0.00 0.00 41.12 3.96
2915 5223 5.782331 TCCCTTCACAAGAGGATATATCAGG 59.218 44.000 14.60 8.61 0.00 3.86
3122 5437 0.036105 CTGCAGCAGTCATGGGTGTA 60.036 55.000 14.90 0.00 36.21 2.90
3307 5629 6.721571 ATCTGTGTGGTTATTTACACTTCG 57.278 37.500 8.69 0.00 45.57 3.79
3320 5652 7.121168 CCAGTGTAATAAATGAATCTGTGTGGT 59.879 37.037 0.00 0.00 0.00 4.16
3559 5891 3.125146 CAGTAACCAACACCACATCATCG 59.875 47.826 0.00 0.00 0.00 3.84
3568 5900 1.607148 GCTCCAACAGTAACCAACACC 59.393 52.381 0.00 0.00 0.00 4.16
3577 5909 1.116536 TCCCACGTGCTCCAACAGTA 61.117 55.000 10.91 0.00 0.00 2.74
3672 6005 7.875971 AGGAAAATATTTAGGATGATCGCAAC 58.124 34.615 0.01 0.00 0.00 4.17
3885 6233 6.183360 ACAGATTGCGACATCGAAATAAATGT 60.183 34.615 7.48 9.90 46.79 2.71
3955 6303 8.616598 TGTTATTTACTCCCTCCTTCCAAAATA 58.383 33.333 0.00 0.00 0.00 1.40
3956 6304 7.475299 TGTTATTTACTCCCTCCTTCCAAAAT 58.525 34.615 0.00 0.00 0.00 1.82
3957 6305 6.854578 TGTTATTTACTCCCTCCTTCCAAAA 58.145 36.000 0.00 0.00 0.00 2.44
3958 6306 6.457159 TGTTATTTACTCCCTCCTTCCAAA 57.543 37.500 0.00 0.00 0.00 3.28
3959 6307 6.457159 TTGTTATTTACTCCCTCCTTCCAA 57.543 37.500 0.00 0.00 0.00 3.53
3962 6310 9.628500 ACATATTTGTTATTTACTCCCTCCTTC 57.372 33.333 0.00 0.00 29.55 3.46
3992 6785 3.442977 AGTGATGGTTCCGTACTACTGTC 59.557 47.826 0.00 0.00 0.00 3.51
4125 6918 7.342581 TCATGCAACCAGTTAACAGGATTATA 58.657 34.615 22.62 6.22 0.00 0.98
4134 6927 5.181690 TCTGTTTCATGCAACCAGTTAAC 57.818 39.130 5.76 0.00 0.00 2.01
4232 7026 8.474831 ACCAGTAAATAAGGGCAAATGAATAAC 58.525 33.333 0.00 0.00 0.00 1.89
4233 7027 8.602472 ACCAGTAAATAAGGGCAAATGAATAA 57.398 30.769 0.00 0.00 0.00 1.40
4415 7218 5.565638 GCGAGAAGCTCAATTAAACAACTTC 59.434 40.000 0.00 0.00 44.04 3.01
4432 7235 2.393271 AACATGGAGAAGGCGAGAAG 57.607 50.000 0.00 0.00 0.00 2.85
4433 7236 2.224523 ACAAACATGGAGAAGGCGAGAA 60.225 45.455 0.00 0.00 0.00 2.87
4434 7237 1.347707 ACAAACATGGAGAAGGCGAGA 59.652 47.619 0.00 0.00 0.00 4.04
4435 7238 1.813513 ACAAACATGGAGAAGGCGAG 58.186 50.000 0.00 0.00 0.00 5.03
4436 7239 2.270352 AACAAACATGGAGAAGGCGA 57.730 45.000 0.00 0.00 0.00 5.54
4437 7240 3.941483 AGATAACAAACATGGAGAAGGCG 59.059 43.478 0.00 0.00 0.00 5.52
4438 7241 5.163612 GGAAGATAACAAACATGGAGAAGGC 60.164 44.000 0.00 0.00 0.00 4.35
4439 7242 5.945784 TGGAAGATAACAAACATGGAGAAGG 59.054 40.000 0.00 0.00 0.00 3.46
4474 7277 9.407380 TCATGATGGTTAAGCATGTTAATAAGT 57.593 29.630 24.07 0.00 40.12 2.24
4515 7318 0.995024 ACCTTGCTGGCCTTATCACT 59.005 50.000 3.32 0.00 40.22 3.41
4649 7456 8.982723 AGAGAACACATTTATATCCACAGTACT 58.017 33.333 0.00 0.00 0.00 2.73
4855 7733 5.478679 TCAAACCACTCAAACTCAAAAGGAA 59.521 36.000 0.00 0.00 0.00 3.36
4916 7795 1.597854 CCACTTTGACTGCCTGCGA 60.598 57.895 0.00 0.00 0.00 5.10
4925 7804 4.943705 TGCATCTTTAGGATCCACTTTGAC 59.056 41.667 15.82 0.00 31.27 3.18
5085 7964 2.297701 GGTTTTGTCTGACCTTGAGCA 58.702 47.619 5.17 0.00 33.08 4.26
5112 7992 3.347216 AGTTAAAGGCTAGCCATGTGTG 58.653 45.455 34.70 0.00 38.92 3.82
5113 7993 3.610911 GAGTTAAAGGCTAGCCATGTGT 58.389 45.455 34.70 12.93 38.92 3.72
5114 7994 2.609459 CGAGTTAAAGGCTAGCCATGTG 59.391 50.000 34.70 12.28 38.92 3.21
5115 7995 2.906354 CGAGTTAAAGGCTAGCCATGT 58.094 47.619 34.70 20.90 38.92 3.21
5116 7996 1.599542 GCGAGTTAAAGGCTAGCCATG 59.400 52.381 34.70 11.72 38.92 3.66
5200 8090 1.404391 GCATGCTTCCTTGTGATCCTG 59.596 52.381 11.37 0.00 0.00 3.86
5312 8202 6.521151 AAGGCAAAGATGAAAATACTCCAG 57.479 37.500 0.00 0.00 0.00 3.86
5323 8213 5.139727 TCAGGAAAAGAAAGGCAAAGATGA 58.860 37.500 0.00 0.00 0.00 2.92
5398 8288 4.691860 AAAATGTGACAGAGCTACATGC 57.308 40.909 0.00 0.00 43.29 4.06
5420 8315 2.143122 CGACAGTGTGCAACCAATACT 58.857 47.619 0.00 0.00 34.36 2.12
5427 8322 3.218721 CACAACGACAGTGTGCAAC 57.781 52.632 0.00 0.00 32.44 4.17
5488 8383 4.827692 AGTATGTTGCGACCAAAGATACA 58.172 39.130 11.90 0.00 34.26 2.29
5493 8388 4.854399 TCAAAAGTATGTTGCGACCAAAG 58.146 39.130 0.45 0.00 31.83 2.77
5495 8390 4.902443 TTCAAAAGTATGTTGCGACCAA 57.098 36.364 0.45 0.00 31.83 3.67
5500 8395 6.607689 TCAACCTATTCAAAAGTATGTTGCG 58.392 36.000 0.00 0.00 31.83 4.85
5512 8407 5.359576 ACTGTGCAAACTTCAACCTATTCAA 59.640 36.000 0.00 0.00 0.00 2.69
5513 8408 4.887071 ACTGTGCAAACTTCAACCTATTCA 59.113 37.500 0.00 0.00 0.00 2.57
5519 8414 3.843999 TCAAACTGTGCAAACTTCAACC 58.156 40.909 0.00 0.00 0.00 3.77
5520 8415 6.090628 TCAATTCAAACTGTGCAAACTTCAAC 59.909 34.615 0.00 0.00 0.00 3.18
5673 8576 0.894184 GATGAGCATGCCCATCCAGG 60.894 60.000 26.87 0.00 34.60 4.45
5674 8577 1.235281 CGATGAGCATGCCCATCCAG 61.235 60.000 29.67 16.95 36.67 3.86
5675 8578 1.228033 CGATGAGCATGCCCATCCA 60.228 57.895 29.67 14.66 36.67 3.41
5676 8579 1.970114 CCGATGAGCATGCCCATCC 60.970 63.158 29.67 16.03 36.67 3.51
5677 8580 2.623915 GCCGATGAGCATGCCCATC 61.624 63.158 27.21 27.21 36.67 3.51
5678 8581 2.596631 GCCGATGAGCATGCCCAT 60.597 61.111 15.28 15.28 0.00 4.00
5684 8589 1.449353 GAAGGGAGCCGATGAGCAT 59.551 57.895 0.00 0.00 34.23 3.79
5720 8625 0.881159 TTGGCCAGACGTAAACACGG 60.881 55.000 5.11 0.00 37.45 4.94
5755 8660 1.425412 TCGCCTTTCGCTAAGACAAC 58.575 50.000 0.00 0.00 35.80 3.32
5767 8673 1.669211 GCTGAGTACGACTTCGCCTTT 60.669 52.381 0.00 0.00 44.43 3.11
5769 8675 0.961358 AGCTGAGTACGACTTCGCCT 60.961 55.000 0.00 0.00 44.43 5.52
5787 8693 1.684983 CCATGGCCATTTAGCAAGGAG 59.315 52.381 17.92 0.00 0.00 3.69
5793 8699 1.068585 GCAGCCATGGCCATTTAGC 59.931 57.895 33.14 21.77 43.17 3.09
5794 8700 0.672342 GAGCAGCCATGGCCATTTAG 59.328 55.000 33.14 16.43 43.17 1.85
5795 8701 1.102809 CGAGCAGCCATGGCCATTTA 61.103 55.000 33.14 0.00 43.17 1.40
5798 8704 4.119363 ACGAGCAGCCATGGCCAT 62.119 61.111 33.14 19.19 43.17 4.40
5865 8789 8.677300 CACAATCTAGCAAAATACAGTACCATT 58.323 33.333 0.00 0.00 0.00 3.16
5887 8811 1.039068 CAAAGCACCCATCACCACAA 58.961 50.000 0.00 0.00 0.00 3.33
5889 8813 0.539438 TCCAAAGCACCCATCACCAC 60.539 55.000 0.00 0.00 0.00 4.16
5899 8823 7.437862 TGATAAAACAAGTTCAATCCAAAGCAC 59.562 33.333 0.00 0.00 0.00 4.40
5939 8863 4.545610 GCAATTGAAGACGGATTTGAACA 58.454 39.130 10.34 0.00 0.00 3.18
5942 8866 2.491693 GGGCAATTGAAGACGGATTTGA 59.508 45.455 10.34 0.00 0.00 2.69
6094 9021 8.726988 GTTGAAGTTATTAGGACAAGTATGCAA 58.273 33.333 0.00 0.00 0.00 4.08
6101 9028 7.094334 GGGAAAGGTTGAAGTTATTAGGACAAG 60.094 40.741 0.00 0.00 0.00 3.16
6134 9061 5.508994 CGAGCCCAGGTTGAAGTTAATTTTT 60.509 40.000 0.00 0.00 0.00 1.94
6135 9062 4.022329 CGAGCCCAGGTTGAAGTTAATTTT 60.022 41.667 0.00 0.00 0.00 1.82
6136 9063 3.506067 CGAGCCCAGGTTGAAGTTAATTT 59.494 43.478 0.00 0.00 0.00 1.82
6137 9064 3.081804 CGAGCCCAGGTTGAAGTTAATT 58.918 45.455 0.00 0.00 0.00 1.40
6138 9065 2.711542 CGAGCCCAGGTTGAAGTTAAT 58.288 47.619 0.00 0.00 0.00 1.40
6139 9066 1.880646 GCGAGCCCAGGTTGAAGTTAA 60.881 52.381 0.00 0.00 0.00 2.01
6148 9075 2.172483 CTACACAAGCGAGCCCAGGT 62.172 60.000 0.00 0.00 0.00 4.00
6164 9091 2.029838 TCGAACGGAGGGAGTACTAC 57.970 55.000 0.00 0.00 0.00 2.73
6166 9093 1.915141 TTTCGAACGGAGGGAGTACT 58.085 50.000 0.00 0.00 0.00 2.73
6167 9094 2.730550 TTTTCGAACGGAGGGAGTAC 57.269 50.000 0.00 0.00 0.00 2.73
6232 9159 6.212791 AGGCTTTCTTGGATACTACACAAGTA 59.787 38.462 0.00 0.00 44.76 2.24
6233 9160 5.013183 AGGCTTTCTTGGATACTACACAAGT 59.987 40.000 0.00 0.00 41.64 3.16
6234 9161 5.491982 AGGCTTTCTTGGATACTACACAAG 58.508 41.667 0.00 0.00 42.14 3.16
6235 9162 5.499004 AGGCTTTCTTGGATACTACACAA 57.501 39.130 0.00 0.00 37.61 3.33
6236 9163 5.012664 TGAAGGCTTTCTTGGATACTACACA 59.987 40.000 10.19 0.00 35.50 3.72
6237 9164 5.488341 TGAAGGCTTTCTTGGATACTACAC 58.512 41.667 10.19 0.00 35.50 2.90
6238 9165 5.755409 TGAAGGCTTTCTTGGATACTACA 57.245 39.130 10.19 0.00 35.50 2.74
6239 9166 6.261158 GGATTGAAGGCTTTCTTGGATACTAC 59.739 42.308 10.19 0.00 35.50 2.73
6240 9167 6.069673 TGGATTGAAGGCTTTCTTGGATACTA 60.070 38.462 10.19 0.00 35.50 1.82
6264 9344 5.696724 ACTTCTTTACTGACGATCCACTTTG 59.303 40.000 0.00 0.00 0.00 2.77
6280 9360 4.404394 TGATCGGTGCTATCCACTTCTTTA 59.596 41.667 0.00 0.00 44.08 1.85
6287 9367 6.348540 GGAAATAAATGATCGGTGCTATCCAC 60.349 42.308 0.00 0.00 43.90 4.02
6289 9369 5.940470 AGGAAATAAATGATCGGTGCTATCC 59.060 40.000 0.00 0.00 0.00 2.59
6294 9374 8.871686 AATAAAAGGAAATAAATGATCGGTGC 57.128 30.769 0.00 0.00 0.00 5.01
6353 9433 8.178313 TCAGACACTCTTTCACTCAGTTAATA 57.822 34.615 0.00 0.00 0.00 0.98
6356 9436 6.656632 ATCAGACACTCTTTCACTCAGTTA 57.343 37.500 0.00 0.00 0.00 2.24
6375 9455 4.690184 TTTGCTGTTCATGTGCTATCAG 57.310 40.909 0.00 0.00 0.00 2.90
6380 9460 4.595762 ATTCTTTTGCTGTTCATGTGCT 57.404 36.364 0.00 0.00 0.00 4.40
6394 9474 5.010617 AGTGGTATGCCGACAAAATTCTTTT 59.989 36.000 0.00 0.00 37.67 2.27
6455 9535 1.202463 CCATCAGCTGTACCCTTCTCG 60.202 57.143 14.67 0.00 0.00 4.04
6490 9570 2.476619 GGGTGATATGTCGATTCGCAAG 59.523 50.000 0.00 0.00 0.00 4.01
6491 9571 2.102420 AGGGTGATATGTCGATTCGCAA 59.898 45.455 0.00 0.00 0.00 4.85
6492 9572 1.686587 AGGGTGATATGTCGATTCGCA 59.313 47.619 0.00 3.49 0.00 5.10
6493 9573 2.061773 CAGGGTGATATGTCGATTCGC 58.938 52.381 0.00 0.00 0.00 4.70
6494 9574 2.610479 CCCAGGGTGATATGTCGATTCG 60.610 54.545 0.00 0.00 0.00 3.34
6495 9575 2.872038 GCCCAGGGTGATATGTCGATTC 60.872 54.545 7.55 0.00 0.00 2.52
6496 9576 1.072331 GCCCAGGGTGATATGTCGATT 59.928 52.381 7.55 0.00 0.00 3.34
6497 9577 0.687354 GCCCAGGGTGATATGTCGAT 59.313 55.000 7.55 0.00 0.00 3.59
6498 9578 1.744320 CGCCCAGGGTGATATGTCGA 61.744 60.000 14.78 0.00 34.74 4.20
6499 9579 1.300931 CGCCCAGGGTGATATGTCG 60.301 63.158 14.78 0.00 34.74 4.35
6500 9580 0.180406 AACGCCCAGGGTGATATGTC 59.820 55.000 27.04 0.00 36.58 3.06
6501 9581 0.623723 AAACGCCCAGGGTGATATGT 59.376 50.000 27.04 0.00 36.58 2.29
6502 9582 1.024271 CAAACGCCCAGGGTGATATG 58.976 55.000 27.04 16.13 36.58 1.78
6503 9583 0.106719 CCAAACGCCCAGGGTGATAT 60.107 55.000 27.04 8.45 36.58 1.63
6504 9584 1.301623 CCAAACGCCCAGGGTGATA 59.698 57.895 27.04 0.00 36.58 2.15
6505 9585 2.035626 CCAAACGCCCAGGGTGAT 59.964 61.111 27.04 11.68 36.58 3.06
6506 9586 4.278513 CCCAAACGCCCAGGGTGA 62.279 66.667 27.04 0.00 37.81 4.02
6510 9590 2.360726 GGTACCCAAACGCCCAGG 60.361 66.667 0.00 0.00 0.00 4.45
6523 9603 0.687427 TGGGTAGCGGGTTAGGGTAC 60.687 60.000 0.00 0.00 37.58 3.34
6542 9622 1.112315 TGGCAGCACAATTCGGGTTT 61.112 50.000 0.00 0.00 0.00 3.27
6547 9627 5.231991 GGTATAAATTTGGCAGCACAATTCG 59.768 40.000 0.00 0.00 0.00 3.34
6548 9628 5.523552 GGGTATAAATTTGGCAGCACAATTC 59.476 40.000 0.00 0.00 0.00 2.17
6555 9635 3.447229 AGTGTGGGTATAAATTTGGCAGC 59.553 43.478 0.00 0.00 0.00 5.25
6556 9636 6.767524 TTAGTGTGGGTATAAATTTGGCAG 57.232 37.500 0.00 0.00 0.00 4.85
6557 9637 6.071278 GGTTTAGTGTGGGTATAAATTTGGCA 60.071 38.462 0.00 0.00 0.00 4.92
6558 9638 6.334989 GGTTTAGTGTGGGTATAAATTTGGC 58.665 40.000 0.00 0.00 0.00 4.52
6559 9639 6.151480 ACGGTTTAGTGTGGGTATAAATTTGG 59.849 38.462 0.00 0.00 0.00 3.28
6560 9640 7.148355 ACGGTTTAGTGTGGGTATAAATTTG 57.852 36.000 0.00 0.00 0.00 2.32
6561 9641 6.092533 CGACGGTTTAGTGTGGGTATAAATTT 59.907 38.462 0.00 0.00 0.00 1.82
6562 9642 5.581874 CGACGGTTTAGTGTGGGTATAAATT 59.418 40.000 0.00 0.00 0.00 1.82
6563 9643 5.111293 CGACGGTTTAGTGTGGGTATAAAT 58.889 41.667 0.00 0.00 0.00 1.40
6564 9644 4.493547 CGACGGTTTAGTGTGGGTATAAA 58.506 43.478 0.00 0.00 0.00 1.40
6565 9645 3.119173 CCGACGGTTTAGTGTGGGTATAA 60.119 47.826 5.48 0.00 0.00 0.98
6566 9646 2.426738 CCGACGGTTTAGTGTGGGTATA 59.573 50.000 5.48 0.00 0.00 1.47
6567 9647 1.205417 CCGACGGTTTAGTGTGGGTAT 59.795 52.381 5.48 0.00 0.00 2.73
6568 9648 0.602562 CCGACGGTTTAGTGTGGGTA 59.397 55.000 5.48 0.00 0.00 3.69
6569 9649 1.368579 CCGACGGTTTAGTGTGGGT 59.631 57.895 5.48 0.00 0.00 4.51
6570 9650 1.375013 CCCGACGGTTTAGTGTGGG 60.375 63.158 13.94 0.00 34.15 4.61
6571 9651 0.602562 TACCCGACGGTTTAGTGTGG 59.397 55.000 13.94 0.00 40.58 4.17
6572 9652 2.094597 TGATACCCGACGGTTTAGTGTG 60.095 50.000 13.94 0.00 40.58 3.82
6573 9653 2.165030 CTGATACCCGACGGTTTAGTGT 59.835 50.000 13.94 4.77 40.58 3.55
6574 9654 2.480759 CCTGATACCCGACGGTTTAGTG 60.481 54.545 13.94 0.00 40.58 2.74
6575 9655 1.753073 CCTGATACCCGACGGTTTAGT 59.247 52.381 13.94 5.93 40.58 2.24
6576 9656 1.753073 ACCTGATACCCGACGGTTTAG 59.247 52.381 13.94 0.00 40.58 1.85
6577 9657 1.851304 ACCTGATACCCGACGGTTTA 58.149 50.000 13.94 3.95 40.58 2.01
6578 9658 1.851304 TACCTGATACCCGACGGTTT 58.149 50.000 13.94 1.44 40.58 3.27
6579 9659 1.753073 CTTACCTGATACCCGACGGTT 59.247 52.381 13.94 0.00 40.58 4.44
6581 9661 0.672342 CCTTACCTGATACCCGACGG 59.328 60.000 6.99 6.99 0.00 4.79
6582 9662 0.672342 CCCTTACCTGATACCCGACG 59.328 60.000 0.00 0.00 0.00 5.12
6583 9663 1.785647 ACCCTTACCTGATACCCGAC 58.214 55.000 0.00 0.00 0.00 4.79
6584 9664 2.391678 GAACCCTTACCTGATACCCGA 58.608 52.381 0.00 0.00 0.00 5.14
6585 9665 1.068127 CGAACCCTTACCTGATACCCG 59.932 57.143 0.00 0.00 0.00 5.28
6593 9673 2.019807 TGAGAACCGAACCCTTACCT 57.980 50.000 0.00 0.00 0.00 3.08
6597 9677 2.375509 AGGAAATGAGAACCGAACCCTT 59.624 45.455 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.