Multiple sequence alignment - TraesCS4A01G289500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G289500 chr4A 100.000 3717 0 0 1 3717 594001643 594005359 0.000000e+00 6865.0
1 TraesCS4A01G289500 chr4A 96.528 288 8 2 1 288 620981039 620980754 3.360000e-130 475.0
2 TraesCS4A01G289500 chr4A 79.083 349 38 19 3396 3715 594027929 594028271 1.350000e-49 207.0
3 TraesCS4A01G289500 chr4D 90.304 1186 65 23 928 2087 9445644 9444483 0.000000e+00 1507.0
4 TraesCS4A01G289500 chr4D 81.127 816 74 42 2175 2948 9444332 9443555 6.920000e-162 580.0
5 TraesCS4A01G289500 chr4D 88.150 481 41 4 3253 3717 9443197 9442717 3.240000e-155 558.0
6 TraesCS4A01G289500 chr4D 84.615 494 24 17 390 863 9446134 9445673 9.470000e-121 444.0
7 TraesCS4A01G289500 chr4D 92.391 92 3 2 319 406 9446253 9446162 1.080000e-25 128.0
8 TraesCS4A01G289500 chr4D 94.118 68 4 0 2576 2643 497895600 497895533 1.830000e-18 104.0
9 TraesCS4A01G289500 chr4D 89.394 66 7 0 2577 2642 37932843 37932908 2.380000e-12 84.2
10 TraesCS4A01G289500 chr4B 89.650 628 29 12 928 1531 18094054 18093439 0.000000e+00 767.0
11 TraesCS4A01G289500 chr4B 92.523 535 24 7 1573 2095 18093426 18092896 0.000000e+00 752.0
12 TraesCS4A01G289500 chr4B 82.138 683 58 27 3092 3717 17999681 17999006 9.140000e-146 527.0
13 TraesCS4A01G289500 chr4B 86.242 298 18 11 2463 2756 18092146 18091868 6.030000e-78 302.0
14 TraesCS4A01G289500 chr4B 92.135 89 3 2 321 405 18094584 18094496 5.040000e-24 122.0
15 TraesCS4A01G289500 chr4B 94.118 68 4 0 2576 2643 639123336 639123269 1.830000e-18 104.0
16 TraesCS4A01G289500 chr4B 89.394 66 7 0 2577 2642 55313836 55313901 2.380000e-12 84.2
17 TraesCS4A01G289500 chr4B 94.444 36 2 0 2913 2948 17999852 17999817 5.190000e-04 56.5
18 TraesCS4A01G289500 chr5A 96.194 289 10 1 1 288 560612411 560612123 4.350000e-129 472.0
19 TraesCS4A01G289500 chr5A 94.810 289 12 2 1 288 293507646 293507932 7.320000e-122 448.0
20 TraesCS4A01G289500 chr5A 94.118 68 4 0 2576 2643 678202750 678202683 1.830000e-18 104.0
21 TraesCS4A01G289500 chr5A 92.647 68 5 0 1341 1408 478021059 478021126 8.500000e-17 99.0
22 TraesCS4A01G289500 chr6D 95.876 291 9 2 1 288 11770643 11770933 5.620000e-128 468.0
23 TraesCS4A01G289500 chr6D 95.286 297 11 2 1 297 38190605 38190898 5.620000e-128 468.0
24 TraesCS4A01G289500 chr6A 95.833 288 12 0 1 288 465233464 465233177 2.020000e-127 466.0
25 TraesCS4A01G289500 chr7A 95.156 289 11 3 1 288 90456593 90456879 1.570000e-123 453.0
26 TraesCS4A01G289500 chr1D 93.174 293 16 4 1 292 98844082 98843793 9.540000e-116 427.0
27 TraesCS4A01G289500 chr1D 88.000 75 9 0 1334 1408 391223581 391223655 5.110000e-14 89.8
28 TraesCS4A01G289500 chr5D 92.491 293 18 4 1 290 486437686 486437395 2.070000e-112 416.0
29 TraesCS4A01G289500 chr2D 94.203 69 4 0 1340 1408 648203709 648203641 5.080000e-19 106.0
30 TraesCS4A01G289500 chr7D 85.859 99 8 4 1313 1411 587110622 587110530 2.360000e-17 100.0
31 TraesCS4A01G289500 chr3D 86.747 83 9 2 2118 2199 335667411 335667330 1.420000e-14 91.6
32 TraesCS4A01G289500 chr3A 86.747 83 9 2 2118 2199 453656312 453656231 1.420000e-14 91.6
33 TraesCS4A01G289500 chr6B 94.444 54 3 0 2589 2642 694513871 694513818 2.380000e-12 84.2
34 TraesCS4A01G289500 chr5B 89.394 66 7 0 2577 2642 535469258 535469323 2.380000e-12 84.2
35 TraesCS4A01G289500 chr5B 77.143 140 18 9 2117 2252 82456660 82456789 6.660000e-08 69.4
36 TraesCS4A01G289500 chr5B 100.000 32 0 0 2950 2981 493128954 493128923 4.010000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G289500 chr4A 594001643 594005359 3716 False 6865.00 6865 100.0000 1 3717 1 chr4A.!!$F1 3716
1 TraesCS4A01G289500 chr4D 9442717 9446253 3536 True 643.40 1507 87.3174 319 3717 5 chr4D.!!$R2 3398
2 TraesCS4A01G289500 chr4B 18091868 18094584 2716 True 485.75 767 90.1375 321 2756 4 chr4B.!!$R3 2435
3 TraesCS4A01G289500 chr4B 17999006 17999852 846 True 291.75 527 88.2910 2913 3717 2 chr4B.!!$R2 804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 564 0.039911 AACGGAGGCTCCTCTACAGT 59.960 55.0 29.81 16.82 42.38 3.55 F
543 617 0.104304 CGAGTGTGGTATACAGGGCC 59.896 60.0 5.01 0.00 40.69 5.80 F
1551 1669 0.035152 ATCCATTGCAAGCGAGACCA 60.035 50.0 4.94 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 1650 0.035152 TGGTCTCGCTTGCAATGGAT 60.035 50.0 0.00 0.00 0.00 3.41 R
2485 3088 0.317269 CAGCAAAACACACAGCCGAG 60.317 55.0 0.00 0.00 0.00 4.63 R
3308 4049 0.314302 CGTCCACCTATAGGCGAAGG 59.686 60.0 19.25 14.91 39.32 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.541143 TCCAACAAAATAAAATTCCTCTTTGAC 57.459 29.630 8.96 0.00 0.00 3.18
39 40 9.546428 CCAACAAAATAAAATTCCTCTTTGACT 57.454 29.630 8.96 0.00 0.00 3.41
49 50 9.942850 AAAATTCCTCTTTGACTTCTTTTCAAA 57.057 25.926 0.00 0.00 39.99 2.69
50 51 9.942850 AAATTCCTCTTTGACTTCTTTTCAAAA 57.057 25.926 0.00 0.00 41.32 2.44
51 52 9.942850 AATTCCTCTTTGACTTCTTTTCAAAAA 57.057 25.926 0.00 0.00 41.32 1.94
85 86 9.462174 TTTTTAGTCAAAATAGCATGAACAGTG 57.538 29.630 0.00 0.00 33.72 3.66
86 87 7.977789 TTAGTCAAAATAGCATGAACAGTGA 57.022 32.000 0.00 0.00 0.00 3.41
87 88 6.246420 AGTCAAAATAGCATGAACAGTGAC 57.754 37.500 0.00 2.40 34.46 3.67
88 89 5.182001 AGTCAAAATAGCATGAACAGTGACC 59.818 40.000 0.00 0.00 34.73 4.02
89 90 5.182001 GTCAAAATAGCATGAACAGTGACCT 59.818 40.000 0.00 0.00 0.00 3.85
90 91 6.371548 GTCAAAATAGCATGAACAGTGACCTA 59.628 38.462 0.00 0.00 0.00 3.08
91 92 7.066284 GTCAAAATAGCATGAACAGTGACCTAT 59.934 37.037 0.00 0.00 0.00 2.57
92 93 8.264347 TCAAAATAGCATGAACAGTGACCTATA 58.736 33.333 0.00 0.00 0.00 1.31
93 94 8.892723 CAAAATAGCATGAACAGTGACCTATAA 58.107 33.333 0.00 0.00 0.00 0.98
94 95 9.632638 AAAATAGCATGAACAGTGACCTATAAT 57.367 29.630 0.00 0.00 0.00 1.28
96 97 9.935241 AATAGCATGAACAGTGACCTATAATAG 57.065 33.333 0.00 0.00 0.00 1.73
97 98 6.226787 AGCATGAACAGTGACCTATAATAGC 58.773 40.000 0.00 0.00 0.00 2.97
98 99 5.991606 GCATGAACAGTGACCTATAATAGCA 59.008 40.000 0.00 0.00 0.00 3.49
99 100 6.483307 GCATGAACAGTGACCTATAATAGCAA 59.517 38.462 0.00 0.00 0.00 3.91
100 101 7.012327 GCATGAACAGTGACCTATAATAGCAAA 59.988 37.037 0.00 0.00 0.00 3.68
101 102 9.060347 CATGAACAGTGACCTATAATAGCAAAT 57.940 33.333 0.00 0.00 0.00 2.32
120 121 8.141835 AGCAAATAAATTTTGTCTTTTTCGCT 57.858 26.923 0.00 0.00 0.00 4.93
121 122 8.063630 AGCAAATAAATTTTGTCTTTTTCGCTG 58.936 29.630 0.00 0.00 0.00 5.18
122 123 7.850492 GCAAATAAATTTTGTCTTTTTCGCTGT 59.150 29.630 0.00 0.00 0.00 4.40
123 124 9.146270 CAAATAAATTTTGTCTTTTTCGCTGTG 57.854 29.630 0.00 0.00 0.00 3.66
124 125 8.641499 AATAAATTTTGTCTTTTTCGCTGTGA 57.359 26.923 0.00 0.00 0.00 3.58
125 126 6.959671 AAATTTTGTCTTTTTCGCTGTGAA 57.040 29.167 0.00 0.00 33.85 3.18
126 127 6.573617 AATTTTGTCTTTTTCGCTGTGAAG 57.426 33.333 3.65 0.00 37.99 3.02
127 128 4.695217 TTTGTCTTTTTCGCTGTGAAGT 57.305 36.364 3.65 0.00 37.99 3.01
128 129 3.944422 TGTCTTTTTCGCTGTGAAGTC 57.056 42.857 3.65 0.00 37.99 3.01
129 130 3.266636 TGTCTTTTTCGCTGTGAAGTCA 58.733 40.909 3.65 0.00 37.99 3.41
130 131 3.687212 TGTCTTTTTCGCTGTGAAGTCAA 59.313 39.130 3.65 0.00 37.99 3.18
131 132 4.029043 GTCTTTTTCGCTGTGAAGTCAAC 58.971 43.478 3.65 0.00 37.99 3.18
132 133 2.730183 TTTTCGCTGTGAAGTCAACG 57.270 45.000 3.65 0.00 37.99 4.10
133 134 1.647346 TTTCGCTGTGAAGTCAACGT 58.353 45.000 3.65 0.00 37.99 3.99
134 135 2.495409 TTCGCTGTGAAGTCAACGTA 57.505 45.000 0.00 0.00 31.44 3.57
135 136 2.495409 TCGCTGTGAAGTCAACGTAA 57.505 45.000 0.00 0.00 0.00 3.18
136 137 3.021269 TCGCTGTGAAGTCAACGTAAT 57.979 42.857 0.00 0.00 0.00 1.89
137 138 3.386486 TCGCTGTGAAGTCAACGTAATT 58.614 40.909 0.00 0.00 0.00 1.40
138 139 3.805422 TCGCTGTGAAGTCAACGTAATTT 59.195 39.130 0.00 0.00 0.00 1.82
139 140 4.084745 TCGCTGTGAAGTCAACGTAATTTC 60.085 41.667 0.00 0.00 0.00 2.17
140 141 4.084537 CGCTGTGAAGTCAACGTAATTTCT 60.085 41.667 0.00 0.00 0.00 2.52
141 142 5.558273 CGCTGTGAAGTCAACGTAATTTCTT 60.558 40.000 0.00 0.00 0.00 2.52
142 143 6.199393 GCTGTGAAGTCAACGTAATTTCTTT 58.801 36.000 0.00 0.00 0.00 2.52
143 144 6.691388 GCTGTGAAGTCAACGTAATTTCTTTT 59.309 34.615 0.00 0.00 0.00 2.27
144 145 7.220108 GCTGTGAAGTCAACGTAATTTCTTTTT 59.780 33.333 0.00 0.00 0.00 1.94
173 174 9.929722 TTGAAAATTTATATACTAGTGCGCAAG 57.070 29.630 14.00 10.16 43.44 4.01
174 175 9.104965 TGAAAATTTATATACTAGTGCGCAAGT 57.895 29.630 14.00 16.58 41.68 3.16
178 179 9.760077 AATTTATATACTAGTGCGCAAGTAAGT 57.240 29.630 22.10 19.00 41.68 2.24
179 180 8.792831 TTTATATACTAGTGCGCAAGTAAGTC 57.207 34.615 22.10 5.00 41.68 3.01
180 181 4.713824 ATACTAGTGCGCAAGTAAGTCA 57.286 40.909 22.10 5.27 41.68 3.41
181 182 3.380479 ACTAGTGCGCAAGTAAGTCAA 57.620 42.857 14.00 0.00 41.68 3.18
182 183 3.318017 ACTAGTGCGCAAGTAAGTCAAG 58.682 45.455 14.00 1.66 41.68 3.02
183 184 2.240493 AGTGCGCAAGTAAGTCAAGT 57.760 45.000 14.00 0.00 41.68 3.16
184 185 2.561569 AGTGCGCAAGTAAGTCAAGTT 58.438 42.857 14.00 0.00 41.68 2.66
185 186 2.943033 AGTGCGCAAGTAAGTCAAGTTT 59.057 40.909 14.00 0.00 41.68 2.66
186 187 4.124238 AGTGCGCAAGTAAGTCAAGTTTA 58.876 39.130 14.00 0.00 41.68 2.01
187 188 4.755123 AGTGCGCAAGTAAGTCAAGTTTAT 59.245 37.500 14.00 0.00 41.68 1.40
188 189 5.238650 AGTGCGCAAGTAAGTCAAGTTTATT 59.761 36.000 14.00 0.00 41.68 1.40
189 190 5.564127 GTGCGCAAGTAAGTCAAGTTTATTC 59.436 40.000 14.00 0.00 41.68 1.75
190 191 5.468746 TGCGCAAGTAAGTCAAGTTTATTCT 59.531 36.000 8.16 0.00 41.68 2.40
191 192 6.647481 TGCGCAAGTAAGTCAAGTTTATTCTA 59.353 34.615 8.16 0.00 41.68 2.10
192 193 7.171848 TGCGCAAGTAAGTCAAGTTTATTCTAA 59.828 33.333 8.16 0.00 41.68 2.10
193 194 8.013378 GCGCAAGTAAGTCAAGTTTATTCTAAA 58.987 33.333 0.30 0.00 41.68 1.85
194 195 9.872757 CGCAAGTAAGTCAAGTTTATTCTAAAA 57.127 29.630 0.00 0.00 0.00 1.52
275 276 5.562298 GTACATATGTACCCAGGAACCAT 57.438 43.478 28.48 0.00 43.73 3.55
276 277 4.706842 ACATATGTACCCAGGAACCATC 57.293 45.455 6.56 0.00 0.00 3.51
277 278 3.071023 ACATATGTACCCAGGAACCATCG 59.929 47.826 6.56 0.00 0.00 3.84
278 279 0.837272 ATGTACCCAGGAACCATCGG 59.163 55.000 0.00 0.00 0.00 4.18
279 280 1.268992 TGTACCCAGGAACCATCGGG 61.269 60.000 10.21 10.21 44.88 5.14
295 296 4.235731 GGTATTTCCCGTGGCCTG 57.764 61.111 3.32 0.00 0.00 4.85
296 297 1.301954 GGTATTTCCCGTGGCCTGT 59.698 57.895 3.32 0.00 0.00 4.00
297 298 1.029947 GGTATTTCCCGTGGCCTGTG 61.030 60.000 3.32 0.00 0.00 3.66
298 299 1.029947 GTATTTCCCGTGGCCTGTGG 61.030 60.000 3.32 2.45 0.00 4.17
309 310 3.471354 GCCTGTGGCGGTACTAAAT 57.529 52.632 0.00 0.00 39.62 1.40
310 311 2.607631 GCCTGTGGCGGTACTAAATA 57.392 50.000 0.00 0.00 39.62 1.40
311 312 2.480845 GCCTGTGGCGGTACTAAATAG 58.519 52.381 0.00 0.00 39.62 1.73
312 313 2.101917 GCCTGTGGCGGTACTAAATAGA 59.898 50.000 0.00 0.00 39.62 1.98
313 314 3.244112 GCCTGTGGCGGTACTAAATAGAT 60.244 47.826 0.00 0.00 39.62 1.98
314 315 4.021719 GCCTGTGGCGGTACTAAATAGATA 60.022 45.833 0.00 0.00 39.62 1.98
315 316 5.467705 CCTGTGGCGGTACTAAATAGATAC 58.532 45.833 0.00 0.00 0.00 2.24
316 317 5.010314 CCTGTGGCGGTACTAAATAGATACA 59.990 44.000 0.00 0.00 0.00 2.29
317 318 6.080648 TGTGGCGGTACTAAATAGATACAG 57.919 41.667 0.00 0.00 0.00 2.74
368 373 6.351711 GCATGCAGTAAGGAGGTATAGATGAT 60.352 42.308 14.21 0.00 0.00 2.45
379 384 5.016173 AGGTATAGATGATGAGGAGACAGC 58.984 45.833 0.00 0.00 0.00 4.40
458 509 0.040514 TGCCGTCGTTTCAATGCAAG 60.041 50.000 0.00 0.00 0.00 4.01
462 513 1.645265 CGTCGTTTCAATGCAAGCATG 59.355 47.619 8.50 3.54 36.68 4.06
489 563 0.457851 CAACGGAGGCTCCTCTACAG 59.542 60.000 29.81 16.17 42.38 2.74
490 564 0.039911 AACGGAGGCTCCTCTACAGT 59.960 55.000 29.81 16.82 42.38 3.55
494 568 2.578786 GGAGGCTCCTCTACAGTCTAC 58.421 57.143 26.44 0.00 42.38 2.59
496 570 2.946990 GAGGCTCCTCTACAGTCTACAC 59.053 54.545 2.15 0.00 39.80 2.90
497 571 2.578940 AGGCTCCTCTACAGTCTACACT 59.421 50.000 0.00 0.00 0.00 3.55
520 594 4.385405 GTGGAGCTGCGGAGTGCT 62.385 66.667 5.62 0.00 46.63 4.40
524 598 1.807573 GAGCTGCGGAGTGCTGTAC 60.808 63.158 5.62 0.00 46.63 2.90
525 599 3.181967 GCTGCGGAGTGCTGTACG 61.182 66.667 5.62 0.00 46.63 3.67
526 600 2.566529 CTGCGGAGTGCTGTACGA 59.433 61.111 0.00 0.00 46.63 3.43
527 601 1.515088 CTGCGGAGTGCTGTACGAG 60.515 63.158 0.00 0.00 46.63 4.18
528 602 2.201436 CTGCGGAGTGCTGTACGAGT 62.201 60.000 0.00 0.00 46.63 4.18
530 604 1.579932 CGGAGTGCTGTACGAGTGT 59.420 57.895 0.00 0.00 0.00 3.55
531 605 0.729478 CGGAGTGCTGTACGAGTGTG 60.729 60.000 0.00 0.00 0.00 3.82
532 606 0.388649 GGAGTGCTGTACGAGTGTGG 60.389 60.000 0.00 0.00 0.00 4.17
533 607 0.314302 GAGTGCTGTACGAGTGTGGT 59.686 55.000 0.00 0.00 0.00 4.16
534 608 1.538512 GAGTGCTGTACGAGTGTGGTA 59.461 52.381 0.00 0.00 0.00 3.25
535 609 2.163815 GAGTGCTGTACGAGTGTGGTAT 59.836 50.000 0.00 0.00 0.00 2.73
536 610 3.349927 AGTGCTGTACGAGTGTGGTATA 58.650 45.455 0.00 0.00 0.00 1.47
537 611 3.128242 AGTGCTGTACGAGTGTGGTATAC 59.872 47.826 0.00 0.00 0.00 1.47
538 612 3.083293 TGCTGTACGAGTGTGGTATACA 58.917 45.455 5.01 0.00 36.82 2.29
539 613 3.128068 TGCTGTACGAGTGTGGTATACAG 59.872 47.826 5.01 5.53 43.62 2.74
540 614 3.488721 GCTGTACGAGTGTGGTATACAGG 60.489 52.174 5.01 0.00 41.91 4.00
541 615 3.018856 TGTACGAGTGTGGTATACAGGG 58.981 50.000 5.01 0.00 40.69 4.45
542 616 0.822164 ACGAGTGTGGTATACAGGGC 59.178 55.000 5.01 0.00 40.69 5.19
543 617 0.104304 CGAGTGTGGTATACAGGGCC 59.896 60.000 5.01 0.00 40.69 5.80
544 618 0.104304 GAGTGTGGTATACAGGGCCG 59.896 60.000 5.01 0.00 40.69 6.13
545 619 1.145377 GTGTGGTATACAGGGCCGG 59.855 63.158 0.79 0.79 40.69 6.13
546 620 2.110420 GTGGTATACAGGGCCGGC 59.890 66.667 21.18 21.18 0.00 6.13
547 621 3.165685 TGGTATACAGGGCCGGCC 61.166 66.667 38.57 38.57 0.00 6.13
548 622 4.309950 GGTATACAGGGCCGGCCG 62.310 72.222 38.22 27.80 36.85 6.13
549 623 4.309950 GTATACAGGGCCGGCCGG 62.310 72.222 40.26 40.26 36.85 6.13
576 650 0.950555 ACACTGCCTGCGTATGTGTG 60.951 55.000 0.00 0.00 39.90 3.82
601 675 0.322816 ATGGACCATGACCAGCACAC 60.323 55.000 6.06 0.00 40.89 3.82
660 743 1.536073 GCCAAGCCCCTTTGAACCTC 61.536 60.000 0.00 0.00 0.00 3.85
661 744 0.113190 CCAAGCCCCTTTGAACCTCT 59.887 55.000 0.00 0.00 0.00 3.69
677 770 4.000928 ACCTCTCTCTCTCTCTCTCTCT 57.999 50.000 0.00 0.00 0.00 3.10
694 787 5.483811 TCTCTCTGGTAGCTCGTATATCAG 58.516 45.833 0.00 0.00 0.00 2.90
739 832 3.229276 CTCTACTCTTGAGCACCAGTG 57.771 52.381 0.00 0.00 0.00 3.66
753 846 0.608640 CCAGTGTACCACTCACCTCC 59.391 60.000 0.00 0.00 43.43 4.30
785 878 1.903877 GCCAGGGCAACAGCTAGAGA 61.904 60.000 5.20 0.00 41.49 3.10
827 924 4.214437 GACATATTTACGCTGATGCTTGC 58.786 43.478 0.00 0.00 36.97 4.01
842 939 4.830826 TGCTTGCTCATCAATCATCATC 57.169 40.909 0.00 0.00 33.57 2.92
863 960 7.614494 TCATCACTAATCAGTTCAGTTCATCA 58.386 34.615 0.00 0.00 30.46 3.07
864 961 7.547019 TCATCACTAATCAGTTCAGTTCATCAC 59.453 37.037 0.00 0.00 30.46 3.06
866 963 5.352569 CACTAATCAGTTCAGTTCATCACCC 59.647 44.000 0.00 0.00 30.46 4.61
867 964 4.371624 AATCAGTTCAGTTCATCACCCA 57.628 40.909 0.00 0.00 0.00 4.51
868 965 3.126001 TCAGTTCAGTTCATCACCCAC 57.874 47.619 0.00 0.00 0.00 4.61
870 967 1.073923 AGTTCAGTTCATCACCCACCC 59.926 52.381 0.00 0.00 0.00 4.61
871 968 1.144691 TTCAGTTCATCACCCACCCA 58.855 50.000 0.00 0.00 0.00 4.51
872 969 0.400213 TCAGTTCATCACCCACCCAC 59.600 55.000 0.00 0.00 0.00 4.61
873 970 0.609131 CAGTTCATCACCCACCCACC 60.609 60.000 0.00 0.00 0.00 4.61
874 971 0.772124 AGTTCATCACCCACCCACCT 60.772 55.000 0.00 0.00 0.00 4.00
875 972 0.322546 GTTCATCACCCACCCACCTC 60.323 60.000 0.00 0.00 0.00 3.85
876 973 0.770166 TTCATCACCCACCCACCTCA 60.770 55.000 0.00 0.00 0.00 3.86
877 974 1.002134 CATCACCCACCCACCTCAC 60.002 63.158 0.00 0.00 0.00 3.51
878 975 1.151810 ATCACCCACCCACCTCACT 60.152 57.895 0.00 0.00 0.00 3.41
879 976 1.201429 ATCACCCACCCACCTCACTC 61.201 60.000 0.00 0.00 0.00 3.51
882 979 2.650116 CCCACCCACCTCACTCTCG 61.650 68.421 0.00 0.00 0.00 4.04
883 980 2.262915 CACCCACCTCACTCTCGC 59.737 66.667 0.00 0.00 0.00 5.03
884 981 2.203640 ACCCACCTCACTCTCGCA 60.204 61.111 0.00 0.00 0.00 5.10
885 982 2.262915 CCCACCTCACTCTCGCAC 59.737 66.667 0.00 0.00 0.00 5.34
886 983 2.126307 CCACCTCACTCTCGCACG 60.126 66.667 0.00 0.00 0.00 5.34
887 984 2.645567 CACCTCACTCTCGCACGT 59.354 61.111 0.00 0.00 0.00 4.49
888 985 1.583495 CCACCTCACTCTCGCACGTA 61.583 60.000 0.00 0.00 0.00 3.57
889 986 0.240145 CACCTCACTCTCGCACGTAA 59.760 55.000 0.00 0.00 0.00 3.18
890 987 1.135373 CACCTCACTCTCGCACGTAAT 60.135 52.381 0.00 0.00 0.00 1.89
891 988 1.135373 ACCTCACTCTCGCACGTAATG 60.135 52.381 0.00 0.00 0.00 1.90
892 989 1.550065 CTCACTCTCGCACGTAATGG 58.450 55.000 0.00 0.00 0.00 3.16
893 990 0.457853 TCACTCTCGCACGTAATGGC 60.458 55.000 0.00 0.00 0.00 4.40
900 997 3.869866 GCACGTAATGGCGTTACTG 57.130 52.632 23.19 19.93 43.83 2.74
901 998 1.073177 GCACGTAATGGCGTTACTGT 58.927 50.000 23.19 19.32 43.83 3.55
902 999 1.461897 GCACGTAATGGCGTTACTGTT 59.538 47.619 23.19 8.29 43.83 3.16
903 1000 2.723618 GCACGTAATGGCGTTACTGTTG 60.724 50.000 23.19 18.06 43.83 3.33
904 1001 2.732500 CACGTAATGGCGTTACTGTTGA 59.267 45.455 23.19 0.00 43.83 3.18
905 1002 3.369756 CACGTAATGGCGTTACTGTTGAT 59.630 43.478 23.19 3.66 43.83 2.57
906 1003 3.998341 ACGTAATGGCGTTACTGTTGATT 59.002 39.130 23.19 3.07 43.04 2.57
907 1004 4.092383 ACGTAATGGCGTTACTGTTGATTC 59.908 41.667 23.19 0.00 43.04 2.52
908 1005 4.328983 CGTAATGGCGTTACTGTTGATTCT 59.671 41.667 23.19 0.00 40.44 2.40
909 1006 5.163893 CGTAATGGCGTTACTGTTGATTCTT 60.164 40.000 23.19 0.00 40.44 2.52
910 1007 4.685169 ATGGCGTTACTGTTGATTCTTG 57.315 40.909 0.00 0.00 0.00 3.02
911 1008 3.472652 TGGCGTTACTGTTGATTCTTGT 58.527 40.909 0.00 0.00 0.00 3.16
912 1009 3.880490 TGGCGTTACTGTTGATTCTTGTT 59.120 39.130 0.00 0.00 0.00 2.83
913 1010 4.336993 TGGCGTTACTGTTGATTCTTGTTT 59.663 37.500 0.00 0.00 0.00 2.83
914 1011 4.909880 GGCGTTACTGTTGATTCTTGTTTC 59.090 41.667 0.00 0.00 0.00 2.78
915 1012 5.277828 GGCGTTACTGTTGATTCTTGTTTCT 60.278 40.000 0.00 0.00 0.00 2.52
916 1013 6.073440 GGCGTTACTGTTGATTCTTGTTTCTA 60.073 38.462 0.00 0.00 0.00 2.10
917 1014 7.360946 GGCGTTACTGTTGATTCTTGTTTCTAT 60.361 37.037 0.00 0.00 0.00 1.98
918 1015 7.688578 GCGTTACTGTTGATTCTTGTTTCTATC 59.311 37.037 0.00 0.00 0.00 2.08
919 1016 8.926710 CGTTACTGTTGATTCTTGTTTCTATCT 58.073 33.333 0.00 0.00 0.00 1.98
921 1018 7.138692 ACTGTTGATTCTTGTTTCTATCTGC 57.861 36.000 0.00 0.00 0.00 4.26
922 1019 6.939163 ACTGTTGATTCTTGTTTCTATCTGCT 59.061 34.615 0.00 0.00 0.00 4.24
923 1020 7.446625 ACTGTTGATTCTTGTTTCTATCTGCTT 59.553 33.333 0.00 0.00 0.00 3.91
924 1021 7.587629 TGTTGATTCTTGTTTCTATCTGCTTG 58.412 34.615 0.00 0.00 0.00 4.01
925 1022 6.187125 TGATTCTTGTTTCTATCTGCTTGC 57.813 37.500 0.00 0.00 0.00 4.01
926 1023 5.124457 TGATTCTTGTTTCTATCTGCTTGCC 59.876 40.000 0.00 0.00 0.00 4.52
984 1087 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1254 1372 2.203015 CCTGGGGTTATGCCGTCG 60.203 66.667 0.00 0.00 38.44 5.12
1269 1387 2.034532 TCGGTGGACTCGGTGCTA 59.965 61.111 0.00 0.00 0.00 3.49
1270 1388 1.604308 TCGGTGGACTCGGTGCTAA 60.604 57.895 0.00 0.00 0.00 3.09
1380 1498 2.507324 GGAGGCAGCGAAGACGAC 60.507 66.667 0.00 0.00 42.66 4.34
1531 1649 1.202486 TCCGTCCGCACTATTCCATTC 60.202 52.381 0.00 0.00 0.00 2.67
1532 1650 1.472552 CCGTCCGCACTATTCCATTCA 60.473 52.381 0.00 0.00 0.00 2.57
1533 1651 2.483876 CGTCCGCACTATTCCATTCAT 58.516 47.619 0.00 0.00 0.00 2.57
1534 1652 2.476619 CGTCCGCACTATTCCATTCATC 59.523 50.000 0.00 0.00 0.00 2.92
1535 1653 2.808543 GTCCGCACTATTCCATTCATCC 59.191 50.000 0.00 0.00 0.00 3.51
1538 1656 3.822735 CCGCACTATTCCATTCATCCATT 59.177 43.478 0.00 0.00 0.00 3.16
1539 1657 4.320714 CCGCACTATTCCATTCATCCATTG 60.321 45.833 0.00 0.00 0.00 2.82
1540 1658 4.553323 GCACTATTCCATTCATCCATTGC 58.447 43.478 0.00 0.00 0.00 3.56
1541 1659 4.038282 GCACTATTCCATTCATCCATTGCA 59.962 41.667 0.00 0.00 0.00 4.08
1542 1660 5.452216 GCACTATTCCATTCATCCATTGCAA 60.452 40.000 0.00 0.00 0.00 4.08
1543 1661 6.213677 CACTATTCCATTCATCCATTGCAAG 58.786 40.000 4.94 0.00 0.00 4.01
1544 1662 3.530265 TTCCATTCATCCATTGCAAGC 57.470 42.857 4.94 0.00 0.00 4.01
1545 1663 1.406180 TCCATTCATCCATTGCAAGCG 59.594 47.619 4.94 0.00 0.00 4.68
1546 1664 1.406180 CCATTCATCCATTGCAAGCGA 59.594 47.619 4.94 2.73 0.00 4.93
1547 1665 2.543031 CCATTCATCCATTGCAAGCGAG 60.543 50.000 4.94 0.00 0.00 5.03
1548 1666 2.112380 TTCATCCATTGCAAGCGAGA 57.888 45.000 4.94 0.00 0.00 4.04
1549 1667 1.372582 TCATCCATTGCAAGCGAGAC 58.627 50.000 4.94 0.00 0.00 3.36
1550 1668 0.379669 CATCCATTGCAAGCGAGACC 59.620 55.000 4.94 0.00 0.00 3.85
1551 1669 0.035152 ATCCATTGCAAGCGAGACCA 60.035 50.000 4.94 0.00 0.00 4.02
1552 1670 0.955428 TCCATTGCAAGCGAGACCAC 60.955 55.000 4.94 0.00 0.00 4.16
1553 1671 0.957395 CCATTGCAAGCGAGACCACT 60.957 55.000 4.94 0.00 0.00 4.00
1554 1672 1.675714 CCATTGCAAGCGAGACCACTA 60.676 52.381 4.94 0.00 0.00 2.74
1555 1673 1.394917 CATTGCAAGCGAGACCACTAC 59.605 52.381 4.94 0.00 0.00 2.73
1556 1674 0.666274 TTGCAAGCGAGACCACTACG 60.666 55.000 0.00 0.00 0.00 3.51
1557 1675 1.080705 GCAAGCGAGACCACTACGT 60.081 57.895 0.00 0.00 0.00 3.57
1558 1676 0.666577 GCAAGCGAGACCACTACGTT 60.667 55.000 0.00 0.00 0.00 3.99
1559 1677 1.401931 GCAAGCGAGACCACTACGTTA 60.402 52.381 0.00 0.00 0.00 3.18
1560 1678 2.734492 GCAAGCGAGACCACTACGTTAT 60.734 50.000 0.00 0.00 0.00 1.89
1561 1679 3.106672 CAAGCGAGACCACTACGTTATC 58.893 50.000 0.00 0.00 0.00 1.75
1562 1680 2.362736 AGCGAGACCACTACGTTATCA 58.637 47.619 0.00 0.00 0.00 2.15
1563 1681 2.355132 AGCGAGACCACTACGTTATCAG 59.645 50.000 0.00 0.00 0.00 2.90
1564 1682 2.717530 CGAGACCACTACGTTATCAGC 58.282 52.381 0.00 0.00 0.00 4.26
1565 1683 2.541178 CGAGACCACTACGTTATCAGCC 60.541 54.545 0.00 0.00 0.00 4.85
1568 1686 3.119101 AGACCACTACGTTATCAGCCAAG 60.119 47.826 0.00 0.00 0.00 3.61
1571 1689 3.181479 CCACTACGTTATCAGCCAAGCTA 60.181 47.826 0.00 0.00 36.40 3.32
1594 1712 0.827368 CTTCTTCCCTCGGCTAGCTT 59.173 55.000 15.72 0.00 0.00 3.74
1596 1714 2.383442 TCTTCCCTCGGCTAGCTTAT 57.617 50.000 15.72 0.00 0.00 1.73
1611 1736 1.470098 GCTTATCCATGGCGGCTAATG 59.530 52.381 11.43 6.41 33.14 1.90
1612 1737 2.875672 GCTTATCCATGGCGGCTAATGA 60.876 50.000 11.43 1.86 33.14 2.57
1616 1741 1.421268 TCCATGGCGGCTAATGAATCT 59.579 47.619 11.43 0.00 33.14 2.40
1619 1744 3.624861 CCATGGCGGCTAATGAATCTATC 59.375 47.826 11.43 0.00 0.00 2.08
1636 1761 3.847602 CTCTCGCAGCTGGAGGGG 61.848 72.222 23.63 16.15 32.34 4.79
2030 2167 2.517959 CCTGGCTCTTCAACCATTTCA 58.482 47.619 0.00 0.00 34.82 2.69
2055 2192 4.385405 GTGAGTGCCCTCGCTGCT 62.385 66.667 2.17 0.00 43.47 4.24
2056 2193 3.630013 TGAGTGCCCTCGCTGCTT 61.630 61.111 0.00 0.00 40.85 3.91
2057 2194 2.282783 TGAGTGCCCTCGCTGCTTA 61.283 57.895 0.00 0.00 40.85 3.09
2060 2197 1.671054 GTGCCCTCGCTGCTTAACA 60.671 57.895 0.00 0.00 35.36 2.41
2087 2226 0.605860 CTGGCAAAGCTCTGTCTGCT 60.606 55.000 0.00 0.00 43.32 4.24
2088 2227 0.887836 TGGCAAAGCTCTGTCTGCTG 60.888 55.000 0.00 0.00 41.03 4.41
2095 2234 0.673022 GCTCTGTCTGCTGTCCCAAG 60.673 60.000 0.00 0.00 0.00 3.61
2096 2235 0.683973 CTCTGTCTGCTGTCCCAAGT 59.316 55.000 0.00 0.00 0.00 3.16
2097 2236 0.681733 TCTGTCTGCTGTCCCAAGTC 59.318 55.000 0.00 0.00 0.00 3.01
2102 2442 0.954452 CTGCTGTCCCAAGTCAAACC 59.046 55.000 0.00 0.00 0.00 3.27
2105 2445 2.224523 TGCTGTCCCAAGTCAAACCTAG 60.225 50.000 0.00 0.00 0.00 3.02
2106 2446 2.876079 GCTGTCCCAAGTCAAACCTAGG 60.876 54.545 7.41 7.41 0.00 3.02
2107 2447 2.372172 CTGTCCCAAGTCAAACCTAGGT 59.628 50.000 9.21 9.21 0.00 3.08
2108 2448 2.781174 TGTCCCAAGTCAAACCTAGGTT 59.219 45.455 21.96 21.96 40.45 3.50
2110 2450 4.600111 TGTCCCAAGTCAAACCTAGGTTAT 59.400 41.667 27.33 14.47 37.35 1.89
2116 2456 9.284968 CCCAAGTCAAACCTAGGTTATAATATG 57.715 37.037 27.33 19.54 37.35 1.78
2117 2457 9.847224 CCAAGTCAAACCTAGGTTATAATATGT 57.153 33.333 27.33 6.48 37.35 2.29
2141 2481 9.689976 TGTCAACATCTATAACAACAAATTTGG 57.310 29.630 21.74 7.90 0.00 3.28
2154 2494 7.138736 ACAACAAATTTGGTTCACTAGATTCG 58.861 34.615 21.74 2.04 0.00 3.34
2215 2555 8.121305 TGTGTAGATCTTGGCACATTTATTTT 57.879 30.769 17.71 0.00 39.30 1.82
2217 2557 9.076596 GTGTAGATCTTGGCACATTTATTTTTC 57.923 33.333 0.00 0.00 39.30 2.29
2218 2558 8.250332 TGTAGATCTTGGCACATTTATTTTTCC 58.750 33.333 0.00 0.00 39.30 3.13
2225 2565 6.872920 TGGCACATTTATTTTTCCATAGACC 58.127 36.000 0.00 0.00 0.00 3.85
2241 2581 6.780031 TCCATAGACCTGGTCAAAATTCAAAA 59.220 34.615 27.48 1.07 37.57 2.44
2248 2588 7.563906 ACCTGGTCAAAATTCAAAAAGATTGA 58.436 30.769 0.00 0.00 0.00 2.57
2262 2606 7.228706 TCAAAAAGATTGACTTAGGTCTGTTCC 59.771 37.037 6.54 0.00 42.54 3.62
2265 2609 6.380079 AGATTGACTTAGGTCTGTTCCAAT 57.620 37.500 6.54 0.00 42.54 3.16
2267 2611 7.331791 AGATTGACTTAGGTCTGTTCCAATAC 58.668 38.462 6.54 0.00 42.54 1.89
2270 2614 6.698380 TGACTTAGGTCTGTTCCAATACTTC 58.302 40.000 6.54 0.00 42.54 3.01
2272 2616 5.479375 ACTTAGGTCTGTTCCAATACTTCGA 59.521 40.000 0.00 0.00 0.00 3.71
2276 2620 6.574350 AGGTCTGTTCCAATACTTCGATTAG 58.426 40.000 0.00 0.00 0.00 1.73
2355 2727 5.886609 TCAAATATGGAGAAGTTTGGACCA 58.113 37.500 0.00 0.00 33.55 4.02
2356 2728 6.493166 TCAAATATGGAGAAGTTTGGACCAT 58.507 36.000 0.00 0.00 42.76 3.55
2357 2729 7.638444 TCAAATATGGAGAAGTTTGGACCATA 58.362 34.615 0.00 0.00 44.19 2.74
2358 2730 8.112822 TCAAATATGGAGAAGTTTGGACCATAA 58.887 33.333 0.00 0.00 43.60 1.90
2395 2768 7.882791 TGCACCTTATATTTCAAAACAGAGAGA 59.117 33.333 0.00 0.00 0.00 3.10
2396 2769 8.897752 GCACCTTATATTTCAAAACAGAGAGAT 58.102 33.333 0.00 0.00 0.00 2.75
2405 2778 6.280855 TCAAAACAGAGAGATCGAATACCA 57.719 37.500 0.00 0.00 0.00 3.25
2411 2784 5.150683 CAGAGAGATCGAATACCATCGTTC 58.849 45.833 0.00 0.00 43.19 3.95
2415 2788 5.980116 AGAGATCGAATACCATCGTTCAAAG 59.020 40.000 9.56 0.00 41.62 2.77
2420 2832 7.837202 TCGAATACCATCGTTCAAAGTATTT 57.163 32.000 0.00 0.00 43.19 1.40
2455 2867 6.857964 ACTTGAAAGTAGCATTCGAAACATTG 59.142 34.615 0.00 0.00 37.52 2.82
2468 3071 6.706055 TCGAAACATTGAAAGCTAGTACTG 57.294 37.500 5.39 0.00 0.00 2.74
2470 3073 5.107104 CGAAACATTGAAAGCTAGTACTGCA 60.107 40.000 5.39 0.00 0.00 4.41
2483 3086 4.506886 AGTACTGCACTAGTTGACAGAC 57.493 45.455 19.26 13.75 40.89 3.51
2484 3087 3.889538 AGTACTGCACTAGTTGACAGACA 59.110 43.478 19.26 7.77 40.89 3.41
2485 3088 3.099267 ACTGCACTAGTTGACAGACAC 57.901 47.619 19.26 0.00 35.67 3.67
2486 3089 2.695666 ACTGCACTAGTTGACAGACACT 59.304 45.455 19.26 0.23 35.67 3.55
2487 3090 3.243569 ACTGCACTAGTTGACAGACACTC 60.244 47.826 19.26 0.00 35.67 3.51
2488 3091 2.287608 TGCACTAGTTGACAGACACTCG 60.288 50.000 0.00 0.00 0.00 4.18
2489 3092 2.922758 GCACTAGTTGACAGACACTCGG 60.923 54.545 0.00 0.00 0.00 4.63
2575 3201 1.305930 GCACGGGGTTAAGCAGAAGG 61.306 60.000 7.03 0.00 0.00 3.46
2684 3310 4.778415 CCAGGGACGACGACGCTG 62.778 72.222 28.17 28.17 44.23 5.18
2685 3311 4.778415 CAGGGACGACGACGCTGG 62.778 72.222 27.70 14.58 42.08 4.85
2745 3377 3.234630 TTCCTTGGGACGGACGCAG 62.235 63.158 0.00 0.00 42.16 5.18
2761 3393 2.814336 ACGCAGGATTCAGTTTTCCTTC 59.186 45.455 0.00 0.00 40.44 3.46
2763 3395 3.074412 GCAGGATTCAGTTTTCCTTCGA 58.926 45.455 0.00 0.00 40.44 3.71
2764 3396 3.126000 GCAGGATTCAGTTTTCCTTCGAG 59.874 47.826 0.00 0.00 40.44 4.04
2777 3409 1.739338 CTTCGAGGGAGATGGGTCGG 61.739 65.000 0.00 0.00 33.21 4.79
2778 3410 2.442272 CGAGGGAGATGGGTCGGT 60.442 66.667 0.00 0.00 0.00 4.69
2779 3411 2.058595 CGAGGGAGATGGGTCGGTT 61.059 63.158 0.00 0.00 0.00 4.44
2780 3412 1.522569 GAGGGAGATGGGTCGGTTG 59.477 63.158 0.00 0.00 0.00 3.77
2781 3413 1.972660 GAGGGAGATGGGTCGGTTGG 61.973 65.000 0.00 0.00 0.00 3.77
2782 3414 1.993391 GGGAGATGGGTCGGTTGGA 60.993 63.158 0.00 0.00 0.00 3.53
2783 3415 1.345715 GGGAGATGGGTCGGTTGGAT 61.346 60.000 0.00 0.00 0.00 3.41
2784 3416 0.179045 GGAGATGGGTCGGTTGGATG 60.179 60.000 0.00 0.00 0.00 3.51
2785 3417 0.815615 GAGATGGGTCGGTTGGATGC 60.816 60.000 0.00 0.00 0.00 3.91
2786 3418 1.823899 GATGGGTCGGTTGGATGCC 60.824 63.158 0.00 0.00 0.00 4.40
2793 3425 2.452813 CGGTTGGATGCCGTCTTCG 61.453 63.158 0.00 0.00 43.84 3.79
2808 3440 1.624813 TCTTCGGTGAATTTACCCCGT 59.375 47.619 13.42 0.00 41.17 5.28
2809 3441 1.735571 CTTCGGTGAATTTACCCCGTG 59.264 52.381 13.42 0.19 41.17 4.94
2816 3448 4.038282 GGTGAATTTACCCCGTGTTTTTCT 59.962 41.667 8.20 0.00 34.56 2.52
2842 3474 1.993370 GGTGTGATCTTTCTTCGGTCG 59.007 52.381 0.00 0.00 0.00 4.79
2851 3483 0.672401 TTCTTCGGTCGGTTCCATGC 60.672 55.000 0.00 0.00 0.00 4.06
2852 3484 1.375396 CTTCGGTCGGTTCCATGCA 60.375 57.895 0.00 0.00 0.00 3.96
2901 3533 3.462982 ACTGTTCATCGTGTTGCTGTTA 58.537 40.909 0.00 0.00 0.00 2.41
2908 3540 6.016213 TCATCGTGTTGCTGTTAGTAGTTA 57.984 37.500 0.00 0.00 0.00 2.24
2909 3541 6.627243 TCATCGTGTTGCTGTTAGTAGTTAT 58.373 36.000 0.00 0.00 0.00 1.89
2910 3542 7.094631 TCATCGTGTTGCTGTTAGTAGTTATT 58.905 34.615 0.00 0.00 0.00 1.40
2911 3543 8.245491 TCATCGTGTTGCTGTTAGTAGTTATTA 58.755 33.333 0.00 0.00 0.00 0.98
2948 3580 0.761187 TGCCAGAGCTTGAGTGAGTT 59.239 50.000 0.00 0.00 40.80 3.01
2950 3582 2.568956 TGCCAGAGCTTGAGTGAGTTAT 59.431 45.455 0.00 0.00 40.80 1.89
2951 3583 2.935201 GCCAGAGCTTGAGTGAGTTATG 59.065 50.000 0.00 0.00 35.50 1.90
2952 3584 2.935201 CCAGAGCTTGAGTGAGTTATGC 59.065 50.000 0.00 0.00 0.00 3.14
2953 3585 3.593096 CAGAGCTTGAGTGAGTTATGCA 58.407 45.455 0.00 0.00 0.00 3.96
2954 3586 3.617706 CAGAGCTTGAGTGAGTTATGCAG 59.382 47.826 0.00 0.00 0.00 4.41
2957 3589 3.513119 AGCTTGAGTGAGTTATGCAGAGA 59.487 43.478 0.00 0.00 0.00 3.10
2959 3591 3.876274 TGAGTGAGTTATGCAGAGACC 57.124 47.619 0.00 0.00 0.00 3.85
2960 3592 2.164422 TGAGTGAGTTATGCAGAGACCG 59.836 50.000 0.00 0.00 0.00 4.79
2961 3593 1.478510 AGTGAGTTATGCAGAGACCGG 59.521 52.381 0.00 0.00 0.00 5.28
2962 3594 0.824109 TGAGTTATGCAGAGACCGGG 59.176 55.000 6.32 0.00 0.00 5.73
2964 3596 1.146263 GTTATGCAGAGACCGGGGG 59.854 63.158 6.32 0.00 0.00 5.40
2965 3597 1.306654 TTATGCAGAGACCGGGGGT 60.307 57.895 6.32 0.00 39.44 4.95
2966 3598 0.912487 TTATGCAGAGACCGGGGGTT 60.912 55.000 6.32 0.00 35.25 4.11
2967 3599 0.912487 TATGCAGAGACCGGGGGTTT 60.912 55.000 6.32 0.00 35.25 3.27
2968 3600 2.046217 GCAGAGACCGGGGGTTTC 60.046 66.667 6.32 0.00 37.12 2.78
2969 3601 2.890766 GCAGAGACCGGGGGTTTCA 61.891 63.158 6.32 0.00 39.01 2.69
2970 3602 1.758592 CAGAGACCGGGGGTTTCAA 59.241 57.895 6.32 0.00 39.01 2.69
2971 3603 0.605589 CAGAGACCGGGGGTTTCAAC 60.606 60.000 6.32 0.00 39.01 3.18
2983 3615 2.578786 GGTTTCAACCTCCTTTTCGGA 58.421 47.619 1.08 0.00 45.75 4.55
2984 3616 2.953648 GGTTTCAACCTCCTTTTCGGAA 59.046 45.455 1.08 0.00 45.75 4.30
2985 3617 3.382227 GGTTTCAACCTCCTTTTCGGAAA 59.618 43.478 0.00 0.00 45.75 3.13
2986 3618 4.142116 GGTTTCAACCTCCTTTTCGGAAAA 60.142 41.667 14.64 14.64 45.75 2.29
2987 3619 5.412640 GTTTCAACCTCCTTTTCGGAAAAA 58.587 37.500 15.99 2.86 42.53 1.94
3003 3635 2.994990 AAAAAGACTACGGCGTGCA 58.005 47.368 24.86 1.71 0.00 4.57
3004 3636 0.584876 AAAAAGACTACGGCGTGCAC 59.415 50.000 24.86 6.82 0.00 4.57
3005 3637 1.226030 AAAAGACTACGGCGTGCACC 61.226 55.000 24.86 9.04 0.00 5.01
3006 3638 3.584868 AAGACTACGGCGTGCACCC 62.585 63.158 24.86 12.55 0.00 4.61
3007 3639 4.065281 GACTACGGCGTGCACCCT 62.065 66.667 24.86 6.44 0.00 4.34
3008 3640 2.677524 ACTACGGCGTGCACCCTA 60.678 61.111 24.86 0.00 0.00 3.53
3009 3641 2.012902 GACTACGGCGTGCACCCTAT 62.013 60.000 24.86 7.16 0.00 2.57
3010 3642 1.143183 CTACGGCGTGCACCCTATT 59.857 57.895 24.86 3.70 0.00 1.73
3020 3652 4.677779 GCGTGCACCCTATTTGATGAAATT 60.678 41.667 12.15 0.00 33.63 1.82
3071 3703 5.483811 TGTAGTGTCACTTGTGAGTCAAAA 58.516 37.500 11.54 0.00 35.48 2.44
3099 3763 9.604626 GTTTGAGATGAGATGTCTAACAAAAAG 57.395 33.333 0.00 0.00 37.89 2.27
3121 3785 4.025015 CTGACAGCATTACCAGCAAATC 57.975 45.455 0.00 0.00 0.00 2.17
3147 3811 4.201950 GCTGCTAACTGGTTATCCACATTG 60.202 45.833 0.00 0.00 39.03 2.82
3171 3835 8.815565 TGTGGCTTAAATTCAGGTTTATCATA 57.184 30.769 0.00 0.00 0.00 2.15
3220 3888 2.134789 AATGGACAAGATCTGGTGCC 57.865 50.000 18.24 13.79 0.00 5.01
3225 3893 3.031736 GGACAAGATCTGGTGCCTACTA 58.968 50.000 7.72 0.00 0.00 1.82
3251 3919 1.444250 CCGGGCAGCGATTTAGGTA 59.556 57.895 0.00 0.00 0.00 3.08
3301 4042 4.813235 GCCGCATAAGGGTGGGCA 62.813 66.667 0.00 0.00 43.23 5.36
3308 4049 0.331616 ATAAGGGTGGGCAAGGACAC 59.668 55.000 0.00 0.00 36.89 3.67
3318 4059 0.107654 GCAAGGACACCTTCGCCTAT 60.108 55.000 0.00 0.00 42.67 2.57
3322 4063 1.063114 AGGACACCTTCGCCTATAGGT 60.063 52.381 20.10 0.00 45.54 3.08
3337 4078 1.331214 TAGGTGGACGGTTTCGAAGT 58.669 50.000 0.00 0.00 40.11 3.01
3394 4143 3.557054 CCCGTCAGAGAAACTCAATGGAA 60.557 47.826 0.00 0.00 30.87 3.53
3399 4148 4.511454 TCAGAGAAACTCAATGGAACAACG 59.489 41.667 0.00 0.00 35.45 4.10
3402 4151 5.914743 AGAGAAACTCAATGGAACAACGACA 60.915 40.000 0.00 0.00 35.45 4.35
3444 4195 3.585862 GATCACGACACAAGGTACACAT 58.414 45.455 0.00 0.00 0.00 3.21
3448 4199 4.038282 TCACGACACAAGGTACACATACTT 59.962 41.667 0.00 0.00 0.00 2.24
3468 4219 0.263765 AAGGAGCAATGCCCATCCAT 59.736 50.000 13.41 0.00 34.08 3.41
3469 4220 0.178970 AGGAGCAATGCCCATCCATC 60.179 55.000 13.41 0.00 34.08 3.51
3470 4221 1.183676 GGAGCAATGCCCATCCATCC 61.184 60.000 0.00 0.00 0.00 3.51
3482 4233 2.216046 CATCCATCCAGATGACCAACG 58.784 52.381 9.24 0.00 45.43 4.10
3502 4253 0.976641 TGGTGATCCTCTTTCGCTGT 59.023 50.000 0.00 0.00 34.23 4.40
3522 4273 0.106149 ACGCAGGAAAGGAAACGTCT 59.894 50.000 0.00 0.00 0.00 4.18
3537 4296 4.532314 AACGTCTACTTCCTAGGGTTTG 57.468 45.455 9.46 0.00 0.00 2.93
3541 4306 3.261137 GTCTACTTCCTAGGGTTTGCTGT 59.739 47.826 9.46 0.78 0.00 4.40
3580 4348 2.507484 CATTGACAGGCAAACCAGAGA 58.493 47.619 0.00 0.00 40.48 3.10
3585 4353 2.681848 GACAGGCAAACCAGAGATCATG 59.318 50.000 0.00 0.00 39.06 3.07
3594 4362 1.584175 CAGAGATCATGGTGCTCTGC 58.416 55.000 19.84 0.00 46.12 4.26
3643 4411 4.093743 TGAGTATGTTTCCTGGCACTAGA 58.906 43.478 0.00 0.00 0.00 2.43
3689 4457 0.958876 GGCGATCCACGGTTTTCCTT 60.959 55.000 0.00 0.00 42.83 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.541143 GTCAAAGAGGAATTTTATTTTGTTGGA 57.459 29.630 0.00 0.00 0.00 3.53
13 14 9.546428 AGTCAAAGAGGAATTTTATTTTGTTGG 57.454 29.630 0.00 0.00 0.00 3.77
23 24 9.942850 TTTGAAAAGAAGTCAAAGAGGAATTTT 57.057 25.926 0.00 0.00 39.46 1.82
24 25 9.942850 TTTTGAAAAGAAGTCAAAGAGGAATTT 57.057 25.926 0.47 0.00 43.76 1.82
25 26 9.942850 TTTTTGAAAAGAAGTCAAAGAGGAATT 57.057 25.926 0.47 0.00 43.76 2.17
59 60 9.462174 CACTGTTCATGCTATTTTGACTAAAAA 57.538 29.630 0.00 0.00 41.88 1.94
60 61 8.845227 TCACTGTTCATGCTATTTTGACTAAAA 58.155 29.630 0.00 0.00 39.86 1.52
61 62 8.289618 GTCACTGTTCATGCTATTTTGACTAAA 58.710 33.333 0.00 0.00 0.00 1.85
62 63 7.094805 GGTCACTGTTCATGCTATTTTGACTAA 60.095 37.037 10.82 0.00 33.05 2.24
63 64 6.371548 GGTCACTGTTCATGCTATTTTGACTA 59.628 38.462 10.82 0.00 33.05 2.59
64 65 5.182001 GGTCACTGTTCATGCTATTTTGACT 59.818 40.000 10.82 0.00 33.05 3.41
65 66 5.182001 AGGTCACTGTTCATGCTATTTTGAC 59.818 40.000 0.00 0.00 0.00 3.18
66 67 5.316167 AGGTCACTGTTCATGCTATTTTGA 58.684 37.500 0.00 0.00 0.00 2.69
67 68 5.633830 AGGTCACTGTTCATGCTATTTTG 57.366 39.130 0.00 0.00 0.00 2.44
68 69 9.632638 ATTATAGGTCACTGTTCATGCTATTTT 57.367 29.630 0.00 0.00 0.00 1.82
70 71 9.935241 CTATTATAGGTCACTGTTCATGCTATT 57.065 33.333 0.00 0.00 0.00 1.73
71 72 8.037758 GCTATTATAGGTCACTGTTCATGCTAT 58.962 37.037 1.12 0.00 0.00 2.97
72 73 7.015195 TGCTATTATAGGTCACTGTTCATGCTA 59.985 37.037 1.12 0.00 0.00 3.49
73 74 6.183361 TGCTATTATAGGTCACTGTTCATGCT 60.183 38.462 1.12 0.00 0.00 3.79
74 75 5.991606 TGCTATTATAGGTCACTGTTCATGC 59.008 40.000 1.12 0.00 0.00 4.06
75 76 8.437360 TTTGCTATTATAGGTCACTGTTCATG 57.563 34.615 1.12 0.00 0.00 3.07
94 95 9.255304 AGCGAAAAAGACAAAATTTATTTGCTA 57.745 25.926 0.00 0.00 32.93 3.49
95 96 8.063630 CAGCGAAAAAGACAAAATTTATTTGCT 58.936 29.630 0.00 0.00 32.93 3.91
96 97 7.850492 ACAGCGAAAAAGACAAAATTTATTTGC 59.150 29.630 0.00 0.00 32.93 3.68
97 98 9.146270 CACAGCGAAAAAGACAAAATTTATTTG 57.854 29.630 0.00 0.00 35.64 2.32
98 99 9.092876 TCACAGCGAAAAAGACAAAATTTATTT 57.907 25.926 0.00 0.00 0.00 1.40
99 100 8.641499 TCACAGCGAAAAAGACAAAATTTATT 57.359 26.923 0.00 0.00 0.00 1.40
100 101 8.641499 TTCACAGCGAAAAAGACAAAATTTAT 57.359 26.923 0.00 0.00 0.00 1.40
101 102 7.757624 ACTTCACAGCGAAAAAGACAAAATTTA 59.242 29.630 0.00 0.00 31.71 1.40
102 103 6.589907 ACTTCACAGCGAAAAAGACAAAATTT 59.410 30.769 0.00 0.00 31.71 1.82
103 104 6.099341 ACTTCACAGCGAAAAAGACAAAATT 58.901 32.000 0.00 0.00 31.71 1.82
104 105 5.650543 ACTTCACAGCGAAAAAGACAAAAT 58.349 33.333 0.00 0.00 31.71 1.82
105 106 5.054390 ACTTCACAGCGAAAAAGACAAAA 57.946 34.783 0.00 0.00 31.71 2.44
106 107 4.155099 TGACTTCACAGCGAAAAAGACAAA 59.845 37.500 0.00 0.00 31.71 2.83
107 108 3.687212 TGACTTCACAGCGAAAAAGACAA 59.313 39.130 0.00 0.00 31.71 3.18
108 109 3.266636 TGACTTCACAGCGAAAAAGACA 58.733 40.909 0.00 0.00 31.71 3.41
109 110 3.944422 TGACTTCACAGCGAAAAAGAC 57.056 42.857 0.00 0.00 31.71 3.01
110 111 3.242284 CGTTGACTTCACAGCGAAAAAGA 60.242 43.478 0.00 0.00 44.63 2.52
111 112 3.029074 CGTTGACTTCACAGCGAAAAAG 58.971 45.455 0.00 0.00 44.63 2.27
112 113 2.417239 ACGTTGACTTCACAGCGAAAAA 59.583 40.909 11.22 0.00 44.63 1.94
113 114 2.004017 ACGTTGACTTCACAGCGAAAA 58.996 42.857 11.22 0.00 44.63 2.29
114 115 1.647346 ACGTTGACTTCACAGCGAAA 58.353 45.000 11.22 0.00 44.63 3.46
115 116 2.495409 TACGTTGACTTCACAGCGAA 57.505 45.000 11.22 0.00 44.63 4.70
116 117 2.495409 TTACGTTGACTTCACAGCGA 57.505 45.000 11.22 0.00 44.63 4.93
117 118 3.788434 AATTACGTTGACTTCACAGCG 57.212 42.857 0.00 0.00 46.51 5.18
118 119 5.344207 AGAAATTACGTTGACTTCACAGC 57.656 39.130 0.00 0.00 0.00 4.40
119 120 8.614994 AAAAAGAAATTACGTTGACTTCACAG 57.385 30.769 0.00 0.00 0.00 3.66
147 148 9.929722 CTTGCGCACTAGTATATAAATTTTCAA 57.070 29.630 11.12 0.00 0.00 2.69
148 149 9.104965 ACTTGCGCACTAGTATATAAATTTTCA 57.895 29.630 11.12 0.00 29.61 2.69
152 153 9.760077 ACTTACTTGCGCACTAGTATATAAATT 57.240 29.630 19.70 1.85 34.71 1.82
153 154 9.408069 GACTTACTTGCGCACTAGTATATAAAT 57.592 33.333 19.70 0.27 34.71 1.40
154 155 8.407832 TGACTTACTTGCGCACTAGTATATAAA 58.592 33.333 19.70 8.11 34.71 1.40
155 156 7.933396 TGACTTACTTGCGCACTAGTATATAA 58.067 34.615 19.70 8.42 34.71 0.98
156 157 7.500720 TGACTTACTTGCGCACTAGTATATA 57.499 36.000 19.70 7.22 34.71 0.86
157 158 6.387041 TGACTTACTTGCGCACTAGTATAT 57.613 37.500 19.70 12.35 34.71 0.86
158 159 5.823209 TGACTTACTTGCGCACTAGTATA 57.177 39.130 19.70 11.39 34.71 1.47
159 160 4.713824 TGACTTACTTGCGCACTAGTAT 57.286 40.909 19.70 8.54 34.71 2.12
160 161 4.022589 ACTTGACTTACTTGCGCACTAGTA 60.023 41.667 11.12 14.33 33.72 1.82
161 162 3.243771 ACTTGACTTACTTGCGCACTAGT 60.244 43.478 18.09 18.09 35.90 2.57
162 163 3.318017 ACTTGACTTACTTGCGCACTAG 58.682 45.455 11.12 8.97 0.00 2.57
163 164 3.380479 ACTTGACTTACTTGCGCACTA 57.620 42.857 11.12 0.00 0.00 2.74
164 165 2.240493 ACTTGACTTACTTGCGCACT 57.760 45.000 11.12 0.00 0.00 4.40
165 166 3.334272 AAACTTGACTTACTTGCGCAC 57.666 42.857 11.12 0.00 0.00 5.34
166 167 5.468746 AGAATAAACTTGACTTACTTGCGCA 59.531 36.000 5.66 5.66 0.00 6.09
167 168 5.928153 AGAATAAACTTGACTTACTTGCGC 58.072 37.500 0.00 0.00 0.00 6.09
168 169 9.872757 TTTTAGAATAAACTTGACTTACTTGCG 57.127 29.630 0.00 0.00 0.00 4.85
254 255 4.282449 CGATGGTTCCTGGGTACATATGTA 59.718 45.833 11.62 11.62 0.00 2.29
255 256 3.071023 CGATGGTTCCTGGGTACATATGT 59.929 47.826 13.93 13.93 0.00 2.29
256 257 3.557054 CCGATGGTTCCTGGGTACATATG 60.557 52.174 0.00 0.00 0.00 1.78
257 258 2.637872 CCGATGGTTCCTGGGTACATAT 59.362 50.000 0.00 0.00 0.00 1.78
258 259 2.043992 CCGATGGTTCCTGGGTACATA 58.956 52.381 0.00 0.00 0.00 2.29
259 260 0.837272 CCGATGGTTCCTGGGTACAT 59.163 55.000 0.00 0.00 0.00 2.29
260 261 1.268992 CCCGATGGTTCCTGGGTACA 61.269 60.000 0.00 0.00 36.86 2.90
261 262 1.525442 CCCGATGGTTCCTGGGTAC 59.475 63.158 0.00 0.00 36.86 3.34
262 263 4.060065 CCCGATGGTTCCTGGGTA 57.940 61.111 0.00 0.00 36.86 3.69
264 265 0.843984 AATACCCGATGGTTCCTGGG 59.156 55.000 11.01 11.01 44.75 4.45
265 266 2.572290 GAAATACCCGATGGTTCCTGG 58.428 52.381 0.00 0.00 44.75 4.45
266 267 2.572290 GGAAATACCCGATGGTTCCTG 58.428 52.381 0.00 0.00 44.75 3.86
278 279 1.029947 CACAGGCCACGGGAAATACC 61.030 60.000 5.01 0.00 38.08 2.73
279 280 1.029947 CCACAGGCCACGGGAAATAC 61.030 60.000 5.01 0.00 0.00 1.89
280 281 1.301623 CCACAGGCCACGGGAAATA 59.698 57.895 5.01 0.00 0.00 1.40
281 282 2.035626 CCACAGGCCACGGGAAAT 59.964 61.111 5.01 0.00 0.00 2.17
282 283 4.966787 GCCACAGGCCACGGGAAA 62.967 66.667 5.01 0.00 44.06 3.13
291 292 2.101917 TCTATTTAGTACCGCCACAGGC 59.898 50.000 0.00 0.00 46.75 4.85
292 293 4.602340 ATCTATTTAGTACCGCCACAGG 57.398 45.455 0.00 0.00 37.30 4.00
293 294 6.080648 TGTATCTATTTAGTACCGCCACAG 57.919 41.667 0.00 0.00 0.00 3.66
294 295 5.595542 ACTGTATCTATTTAGTACCGCCACA 59.404 40.000 0.00 0.00 0.00 4.17
295 296 6.081872 ACTGTATCTATTTAGTACCGCCAC 57.918 41.667 0.00 0.00 0.00 5.01
296 297 7.226441 TCTACTGTATCTATTTAGTACCGCCA 58.774 38.462 0.00 0.00 0.00 5.69
297 298 7.678947 TCTACTGTATCTATTTAGTACCGCC 57.321 40.000 0.00 0.00 0.00 6.13
310 311 9.156940 TGTCTACTACTGGTATCTACTGTATCT 57.843 37.037 0.00 0.00 0.00 1.98
311 312 9.947433 ATGTCTACTACTGGTATCTACTGTATC 57.053 37.037 0.00 0.00 0.00 2.24
312 313 9.727859 CATGTCTACTACTGGTATCTACTGTAT 57.272 37.037 0.00 0.00 0.00 2.29
313 314 8.155510 CCATGTCTACTACTGGTATCTACTGTA 58.844 40.741 0.00 0.00 0.00 2.74
314 315 6.999272 CCATGTCTACTACTGGTATCTACTGT 59.001 42.308 0.00 0.00 0.00 3.55
315 316 7.225011 TCCATGTCTACTACTGGTATCTACTG 58.775 42.308 0.00 0.00 31.81 2.74
316 317 7.390013 TCCATGTCTACTACTGGTATCTACT 57.610 40.000 0.00 0.00 31.81 2.57
317 318 6.655848 CCTCCATGTCTACTACTGGTATCTAC 59.344 46.154 0.00 0.00 31.81 2.59
368 373 0.900421 CATGTCCTGCTGTCTCCTCA 59.100 55.000 0.00 0.00 0.00 3.86
379 384 3.262420 GGCACTGTACTTACATGTCCTG 58.738 50.000 0.00 0.00 35.36 3.86
458 509 0.179156 CTCCGTTGGACAATGCATGC 60.179 55.000 11.82 11.82 0.00 4.06
462 513 1.648467 GAGCCTCCGTTGGACAATGC 61.648 60.000 0.00 0.00 0.00 3.56
505 579 3.006756 TACAGCACTCCGCAGCTCC 62.007 63.158 0.00 0.00 46.13 4.70
512 586 0.729478 CACACTCGTACAGCACTCCG 60.729 60.000 0.00 0.00 0.00 4.63
520 594 3.018856 CCCTGTATACCACACTCGTACA 58.981 50.000 0.00 0.00 32.33 2.90
524 598 0.104304 GGCCCTGTATACCACACTCG 59.896 60.000 0.00 0.00 32.33 4.18
525 599 0.104304 CGGCCCTGTATACCACACTC 59.896 60.000 0.00 0.00 32.33 3.51
526 600 1.335132 CCGGCCCTGTATACCACACT 61.335 60.000 0.00 0.00 32.33 3.55
527 601 1.145377 CCGGCCCTGTATACCACAC 59.855 63.158 0.00 0.00 32.33 3.82
528 602 2.737881 GCCGGCCCTGTATACCACA 61.738 63.158 18.11 0.00 35.30 4.17
530 604 3.165685 GGCCGGCCCTGTATACCA 61.166 66.667 36.64 0.00 0.00 3.25
531 605 4.309950 CGGCCGGCCCTGTATACC 62.310 72.222 39.24 11.89 0.00 2.73
532 606 4.309950 CCGGCCGGCCCTGTATAC 62.310 72.222 39.24 12.70 0.00 1.47
544 618 4.157120 AGTGTGTATCGGCCGGCC 62.157 66.667 36.69 36.69 0.00 6.13
545 619 2.890474 CAGTGTGTATCGGCCGGC 60.890 66.667 27.83 21.18 0.00 6.13
546 620 2.890474 GCAGTGTGTATCGGCCGG 60.890 66.667 27.83 6.60 0.00 6.13
547 621 2.890474 GGCAGTGTGTATCGGCCG 60.890 66.667 22.12 22.12 36.58 6.13
548 622 1.815421 CAGGCAGTGTGTATCGGCC 60.815 63.158 0.00 0.00 44.22 6.13
549 623 2.464459 GCAGGCAGTGTGTATCGGC 61.464 63.158 0.00 0.00 0.00 5.54
550 624 2.167219 CGCAGGCAGTGTGTATCGG 61.167 63.158 0.00 0.00 31.43 4.18
551 625 3.388134 CGCAGGCAGTGTGTATCG 58.612 61.111 0.00 0.00 31.43 2.92
576 650 0.608856 TGGTCATGGTCCATGCACAC 60.609 55.000 24.89 17.86 41.18 3.82
660 743 4.502259 GCTACCAGAGAGAGAGAGAGAGAG 60.502 54.167 0.00 0.00 0.00 3.20
661 744 3.388024 GCTACCAGAGAGAGAGAGAGAGA 59.612 52.174 0.00 0.00 0.00 3.10
677 770 3.004419 GCACACTGATATACGAGCTACCA 59.996 47.826 0.00 0.00 0.00 3.25
694 787 0.952984 GAGCCAGTGGAGAAGCACAC 60.953 60.000 15.20 0.00 37.86 3.82
739 832 1.275573 GTGAAGGGAGGTGAGTGGTAC 59.724 57.143 0.00 0.00 0.00 3.34
803 900 3.439932 GCATCAGCGTAAATATGTCCG 57.560 47.619 0.00 0.00 0.00 4.79
827 924 8.834749 ACTGATTAGTGATGATGATTGATGAG 57.165 34.615 0.00 0.00 35.34 2.90
834 931 8.262933 TGAACTGAACTGATTAGTGATGATGAT 58.737 33.333 0.00 0.00 37.19 2.45
835 932 7.614494 TGAACTGAACTGATTAGTGATGATGA 58.386 34.615 0.00 0.00 37.19 2.92
836 933 7.838771 TGAACTGAACTGATTAGTGATGATG 57.161 36.000 0.00 0.00 37.19 3.07
837 934 8.262933 TGATGAACTGAACTGATTAGTGATGAT 58.737 33.333 0.00 0.00 37.19 2.45
838 935 7.547019 GTGATGAACTGAACTGATTAGTGATGA 59.453 37.037 0.00 0.00 37.19 2.92
839 936 7.201591 GGTGATGAACTGAACTGATTAGTGATG 60.202 40.741 0.00 0.00 37.19 3.07
840 937 6.820656 GGTGATGAACTGAACTGATTAGTGAT 59.179 38.462 0.00 0.00 37.19 3.06
841 938 6.166279 GGTGATGAACTGAACTGATTAGTGA 58.834 40.000 0.00 0.00 37.19 3.41
842 939 5.352569 GGGTGATGAACTGAACTGATTAGTG 59.647 44.000 0.00 0.00 37.19 2.74
863 960 1.536662 GAGAGTGAGGTGGGTGGGT 60.537 63.158 0.00 0.00 0.00 4.51
864 961 2.650116 CGAGAGTGAGGTGGGTGGG 61.650 68.421 0.00 0.00 0.00 4.61
866 963 2.262915 GCGAGAGTGAGGTGGGTG 59.737 66.667 0.00 0.00 0.00 4.61
867 964 2.203640 TGCGAGAGTGAGGTGGGT 60.204 61.111 0.00 0.00 0.00 4.51
868 965 2.262915 GTGCGAGAGTGAGGTGGG 59.737 66.667 0.00 0.00 0.00 4.61
870 967 0.240145 TTACGTGCGAGAGTGAGGTG 59.760 55.000 0.00 0.00 0.00 4.00
871 968 1.135373 CATTACGTGCGAGAGTGAGGT 60.135 52.381 0.00 0.00 0.00 3.85
872 969 1.550065 CATTACGTGCGAGAGTGAGG 58.450 55.000 0.00 0.00 0.00 3.86
873 970 1.550065 CCATTACGTGCGAGAGTGAG 58.450 55.000 0.00 0.00 0.00 3.51
874 971 0.457853 GCCATTACGTGCGAGAGTGA 60.458 55.000 0.00 0.00 0.00 3.41
875 972 1.999051 GCCATTACGTGCGAGAGTG 59.001 57.895 0.00 0.00 0.00 3.51
876 973 4.496670 GCCATTACGTGCGAGAGT 57.503 55.556 0.00 0.00 0.00 3.24
885 982 4.328983 AGAATCAACAGTAACGCCATTACG 59.671 41.667 1.04 0.00 46.77 3.18
886 983 5.796350 AGAATCAACAGTAACGCCATTAC 57.204 39.130 0.00 0.00 43.20 1.89
887 984 5.703592 ACAAGAATCAACAGTAACGCCATTA 59.296 36.000 0.00 0.00 0.00 1.90
888 985 4.518970 ACAAGAATCAACAGTAACGCCATT 59.481 37.500 0.00 0.00 0.00 3.16
889 986 4.072131 ACAAGAATCAACAGTAACGCCAT 58.928 39.130 0.00 0.00 0.00 4.40
890 987 3.472652 ACAAGAATCAACAGTAACGCCA 58.527 40.909 0.00 0.00 0.00 5.69
891 988 4.483476 AACAAGAATCAACAGTAACGCC 57.517 40.909 0.00 0.00 0.00 5.68
892 989 5.748592 AGAAACAAGAATCAACAGTAACGC 58.251 37.500 0.00 0.00 0.00 4.84
893 990 8.926710 AGATAGAAACAAGAATCAACAGTAACG 58.073 33.333 0.00 0.00 0.00 3.18
895 992 8.721478 GCAGATAGAAACAAGAATCAACAGTAA 58.279 33.333 0.00 0.00 0.00 2.24
896 993 8.097038 AGCAGATAGAAACAAGAATCAACAGTA 58.903 33.333 0.00 0.00 0.00 2.74
897 994 6.939163 AGCAGATAGAAACAAGAATCAACAGT 59.061 34.615 0.00 0.00 0.00 3.55
898 995 7.375106 AGCAGATAGAAACAAGAATCAACAG 57.625 36.000 0.00 0.00 0.00 3.16
899 996 7.587629 CAAGCAGATAGAAACAAGAATCAACA 58.412 34.615 0.00 0.00 0.00 3.33
900 997 6.525976 GCAAGCAGATAGAAACAAGAATCAAC 59.474 38.462 0.00 0.00 0.00 3.18
901 998 6.349611 GGCAAGCAGATAGAAACAAGAATCAA 60.350 38.462 0.00 0.00 0.00 2.57
902 999 5.124457 GGCAAGCAGATAGAAACAAGAATCA 59.876 40.000 0.00 0.00 0.00 2.57
903 1000 5.356470 AGGCAAGCAGATAGAAACAAGAATC 59.644 40.000 0.00 0.00 0.00 2.52
904 1001 5.125097 CAGGCAAGCAGATAGAAACAAGAAT 59.875 40.000 0.00 0.00 0.00 2.40
905 1002 4.456911 CAGGCAAGCAGATAGAAACAAGAA 59.543 41.667 0.00 0.00 0.00 2.52
906 1003 4.005650 CAGGCAAGCAGATAGAAACAAGA 58.994 43.478 0.00 0.00 0.00 3.02
907 1004 4.005650 TCAGGCAAGCAGATAGAAACAAG 58.994 43.478 0.00 0.00 0.00 3.16
908 1005 4.019792 TCAGGCAAGCAGATAGAAACAA 57.980 40.909 0.00 0.00 0.00 2.83
909 1006 3.701205 TCAGGCAAGCAGATAGAAACA 57.299 42.857 0.00 0.00 0.00 2.83
910 1007 4.194640 TCATCAGGCAAGCAGATAGAAAC 58.805 43.478 0.00 0.00 0.00 2.78
911 1008 4.492494 TCATCAGGCAAGCAGATAGAAA 57.508 40.909 0.00 0.00 0.00 2.52
912 1009 4.701651 ATCATCAGGCAAGCAGATAGAA 57.298 40.909 0.00 0.00 0.00 2.10
913 1010 5.247792 ACATATCATCAGGCAAGCAGATAGA 59.752 40.000 0.00 0.00 0.00 1.98
914 1011 5.489249 ACATATCATCAGGCAAGCAGATAG 58.511 41.667 0.00 0.00 0.00 2.08
915 1012 5.494390 ACATATCATCAGGCAAGCAGATA 57.506 39.130 0.00 0.00 0.00 1.98
916 1013 4.368565 ACATATCATCAGGCAAGCAGAT 57.631 40.909 0.00 0.00 0.00 2.90
917 1014 3.851458 ACATATCATCAGGCAAGCAGA 57.149 42.857 0.00 0.00 0.00 4.26
918 1015 4.913335 AAACATATCATCAGGCAAGCAG 57.087 40.909 0.00 0.00 0.00 4.24
919 1016 4.951715 AGAAAACATATCATCAGGCAAGCA 59.048 37.500 0.00 0.00 0.00 3.91
920 1017 5.511234 AGAAAACATATCATCAGGCAAGC 57.489 39.130 0.00 0.00 0.00 4.01
921 1018 7.092137 TCAAGAAAACATATCATCAGGCAAG 57.908 36.000 0.00 0.00 0.00 4.01
922 1019 7.649533 ATCAAGAAAACATATCATCAGGCAA 57.350 32.000 0.00 0.00 0.00 4.52
923 1020 8.750515 TTATCAAGAAAACATATCATCAGGCA 57.249 30.769 0.00 0.00 0.00 4.75
924 1021 7.806960 GCTTATCAAGAAAACATATCATCAGGC 59.193 37.037 0.00 0.00 0.00 4.85
925 1022 9.064706 AGCTTATCAAGAAAACATATCATCAGG 57.935 33.333 0.00 0.00 0.00 3.86
956 1056 2.049433 CCACCACTGACCGTCGTC 60.049 66.667 0.00 0.00 39.66 4.20
984 1087 1.062352 ACCATGTCTCCCTACCTACCC 60.062 57.143 0.00 0.00 0.00 3.69
1178 1287 2.355481 GGCAGACGTCGTCGGTTT 60.355 61.111 23.32 3.37 41.85 3.27
1179 1288 4.695231 CGGCAGACGTCGTCGGTT 62.695 66.667 23.32 3.72 41.85 4.44
1254 1372 0.389948 CACTTAGCACCGAGTCCACC 60.390 60.000 0.00 0.00 0.00 4.61
1269 1387 2.122056 AGGTACCGGGAGCCACTT 59.878 61.111 13.58 0.00 0.00 3.16
1270 1388 2.683933 CAGGTACCGGGAGCCACT 60.684 66.667 13.58 0.00 0.00 4.00
1338 1456 4.847585 CTCTCGTCGTCGTCGCCG 62.848 72.222 7.01 0.00 39.77 6.46
1384 1502 4.214327 GAGAGCCTCTTCGCCGGG 62.214 72.222 2.18 0.00 0.00 5.73
1443 1561 1.361668 CGTCGTTCTTGGCCTGGATG 61.362 60.000 3.32 0.00 0.00 3.51
1531 1649 0.379669 GGTCTCGCTTGCAATGGATG 59.620 55.000 0.00 0.00 0.00 3.51
1532 1650 0.035152 TGGTCTCGCTTGCAATGGAT 60.035 50.000 0.00 0.00 0.00 3.41
1533 1651 0.955428 GTGGTCTCGCTTGCAATGGA 60.955 55.000 0.00 0.00 0.00 3.41
1534 1652 0.957395 AGTGGTCTCGCTTGCAATGG 60.957 55.000 0.00 0.00 0.00 3.16
1535 1653 1.394917 GTAGTGGTCTCGCTTGCAATG 59.605 52.381 0.00 0.00 35.12 2.82
1538 1656 1.080772 CGTAGTGGTCTCGCTTGCA 60.081 57.895 0.00 0.00 35.12 4.08
1539 1657 0.666577 AACGTAGTGGTCTCGCTTGC 60.667 55.000 0.00 0.00 45.00 4.01
1540 1658 2.624316 TAACGTAGTGGTCTCGCTTG 57.376 50.000 0.00 0.00 45.00 4.01
1541 1659 2.751259 TGATAACGTAGTGGTCTCGCTT 59.249 45.455 0.00 0.00 45.00 4.68
1542 1660 2.355132 CTGATAACGTAGTGGTCTCGCT 59.645 50.000 0.00 0.00 45.00 4.93
1543 1661 2.717530 CTGATAACGTAGTGGTCTCGC 58.282 52.381 0.00 0.00 45.00 5.03
1544 1662 2.541178 GGCTGATAACGTAGTGGTCTCG 60.541 54.545 0.00 0.00 45.00 4.04
1545 1663 2.426024 TGGCTGATAACGTAGTGGTCTC 59.574 50.000 0.00 0.00 45.00 3.36
1546 1664 2.453521 TGGCTGATAACGTAGTGGTCT 58.546 47.619 0.00 0.00 45.00 3.85
1547 1665 2.953466 TGGCTGATAACGTAGTGGTC 57.047 50.000 0.00 0.00 45.00 4.02
1548 1666 2.677037 GCTTGGCTGATAACGTAGTGGT 60.677 50.000 0.00 0.00 45.00 4.16
1549 1667 1.933853 GCTTGGCTGATAACGTAGTGG 59.066 52.381 0.00 0.00 45.00 4.00
1550 1668 2.893637 AGCTTGGCTGATAACGTAGTG 58.106 47.619 0.00 0.00 37.32 2.74
1551 1669 4.585162 AGATAGCTTGGCTGATAACGTAGT 59.415 41.667 0.00 0.00 41.52 2.73
1552 1670 5.048364 AGAGATAGCTTGGCTGATAACGTAG 60.048 44.000 0.00 0.00 40.10 3.51
1553 1671 4.827835 AGAGATAGCTTGGCTGATAACGTA 59.172 41.667 0.00 0.00 40.10 3.57
1554 1672 3.639094 AGAGATAGCTTGGCTGATAACGT 59.361 43.478 0.00 0.00 40.10 3.99
1555 1673 4.250116 AGAGATAGCTTGGCTGATAACG 57.750 45.455 0.00 0.00 40.10 3.18
1556 1674 5.852827 AGAAGAGATAGCTTGGCTGATAAC 58.147 41.667 0.00 0.00 40.10 1.89
1557 1675 6.463614 GGAAGAAGAGATAGCTTGGCTGATAA 60.464 42.308 0.00 0.00 40.10 1.75
1558 1676 5.011533 GGAAGAAGAGATAGCTTGGCTGATA 59.988 44.000 0.00 0.00 40.10 2.15
1559 1677 4.202346 GGAAGAAGAGATAGCTTGGCTGAT 60.202 45.833 0.00 0.00 40.10 2.90
1560 1678 3.133721 GGAAGAAGAGATAGCTTGGCTGA 59.866 47.826 0.00 0.00 40.10 4.26
1561 1679 3.465871 GGAAGAAGAGATAGCTTGGCTG 58.534 50.000 0.00 0.00 40.10 4.85
1562 1680 2.437651 GGGAAGAAGAGATAGCTTGGCT 59.562 50.000 0.00 0.00 43.41 4.75
1563 1681 2.437651 AGGGAAGAAGAGATAGCTTGGC 59.562 50.000 0.00 0.00 0.00 4.52
1564 1682 3.243704 CGAGGGAAGAAGAGATAGCTTGG 60.244 52.174 0.00 0.00 0.00 3.61
1565 1683 3.243704 CCGAGGGAAGAAGAGATAGCTTG 60.244 52.174 0.00 0.00 0.00 4.01
1568 1686 1.000394 GCCGAGGGAAGAAGAGATAGC 60.000 57.143 0.00 0.00 0.00 2.97
1571 1689 2.593026 CTAGCCGAGGGAAGAAGAGAT 58.407 52.381 0.00 0.00 0.00 2.75
1594 1712 3.264193 AGATTCATTAGCCGCCATGGATA 59.736 43.478 18.40 0.00 42.00 2.59
1596 1714 1.421268 AGATTCATTAGCCGCCATGGA 59.579 47.619 18.40 0.00 42.00 3.41
1611 1736 2.556189 TCCAGCTGCGAGAGATAGATTC 59.444 50.000 8.66 0.00 0.00 2.52
1612 1737 2.557924 CTCCAGCTGCGAGAGATAGATT 59.442 50.000 21.15 0.00 0.00 2.40
1616 1741 0.825425 CCCTCCAGCTGCGAGAGATA 60.825 60.000 25.15 0.00 0.00 1.98
1619 1744 3.847602 CCCCTCCAGCTGCGAGAG 61.848 72.222 25.15 18.46 0.00 3.20
1636 1761 1.811679 GAAGTAGTGCTCCTGCCGC 60.812 63.158 0.00 0.00 38.71 6.53
1835 1963 1.154016 CCTCGCTGTCATCGTTCGT 60.154 57.895 0.00 0.00 0.00 3.85
1951 2088 2.282040 GGCTTGCACACCTGCTCT 60.282 61.111 0.00 0.00 44.57 4.09
2030 2167 1.333177 GAGGGCACTCACGGATCTAT 58.667 55.000 12.23 0.00 43.41 1.98
2052 2189 3.546724 TGCCAGTGTAAACTGTTAAGCA 58.453 40.909 12.15 10.86 36.06 3.91
2053 2190 4.561735 TTGCCAGTGTAAACTGTTAAGC 57.438 40.909 12.15 8.45 36.06 3.09
2055 2192 4.642885 AGCTTTGCCAGTGTAAACTGTTAA 59.357 37.500 12.15 4.01 36.06 2.01
2056 2193 4.204012 AGCTTTGCCAGTGTAAACTGTTA 58.796 39.130 12.15 0.00 36.06 2.41
2057 2194 3.023832 AGCTTTGCCAGTGTAAACTGTT 58.976 40.909 12.15 0.00 36.06 3.16
2060 2197 2.880890 CAGAGCTTTGCCAGTGTAAACT 59.119 45.455 0.00 0.00 0.00 2.66
2061 2198 2.618709 ACAGAGCTTTGCCAGTGTAAAC 59.381 45.455 3.74 0.00 0.00 2.01
2064 2203 1.694150 AGACAGAGCTTTGCCAGTGTA 59.306 47.619 3.74 0.00 0.00 2.90
2071 2210 0.516439 GACAGCAGACAGAGCTTTGC 59.484 55.000 3.74 2.36 41.14 3.68
2087 2226 2.414612 ACCTAGGTTTGACTTGGGACA 58.585 47.619 9.21 0.00 37.63 4.02
2088 2227 3.503800 AACCTAGGTTTGACTTGGGAC 57.496 47.619 21.96 0.00 37.63 4.46
2116 2456 9.691362 ACCAAATTTGTTGTTATAGATGTTGAC 57.309 29.630 16.73 0.00 0.00 3.18
2128 2468 7.647715 CGAATCTAGTGAACCAAATTTGTTGTT 59.352 33.333 16.73 13.73 0.00 2.83
2133 2473 9.277565 CATAACGAATCTAGTGAACCAAATTTG 57.722 33.333 11.40 11.40 0.00 2.32
2182 2522 6.032094 GTGCCAAGATCTACACATTCAAATG 58.968 40.000 15.09 1.20 42.10 2.32
2185 2525 4.650734 TGTGCCAAGATCTACACATTCAA 58.349 39.130 17.55 1.03 38.07 2.69
2215 2555 5.886609 TGAATTTTGACCAGGTCTATGGAA 58.113 37.500 20.82 5.22 43.57 3.53
2217 2557 6.588719 TTTGAATTTTGACCAGGTCTATGG 57.411 37.500 20.82 0.00 46.47 2.74
2218 2558 8.359642 TCTTTTTGAATTTTGACCAGGTCTATG 58.640 33.333 20.82 0.00 33.15 2.23
2225 2565 8.652810 AGTCAATCTTTTTGAATTTTGACCAG 57.347 30.769 10.33 0.00 40.42 4.00
2241 2581 5.825593 TGGAACAGACCTAAGTCAATCTT 57.174 39.130 0.00 0.00 46.15 2.40
2248 2588 5.479375 TCGAAGTATTGGAACAGACCTAAGT 59.521 40.000 0.00 0.00 42.39 2.24
2253 2593 6.338937 ACTAATCGAAGTATTGGAACAGACC 58.661 40.000 0.00 0.00 42.39 3.85
2254 2594 7.829378 AACTAATCGAAGTATTGGAACAGAC 57.171 36.000 0.00 0.00 42.39 3.51
2256 2596 7.333423 TCCAAACTAATCGAAGTATTGGAACAG 59.667 37.037 20.03 0.00 40.13 3.16
2257 2597 7.162761 TCCAAACTAATCGAAGTATTGGAACA 58.837 34.615 20.03 8.08 40.13 3.18
2262 2606 9.329913 CTTTGTTCCAAACTAATCGAAGTATTG 57.670 33.333 0.00 0.00 0.00 1.90
2265 2609 6.428771 CCCTTTGTTCCAAACTAATCGAAGTA 59.571 38.462 0.00 0.00 0.00 2.24
2267 2611 5.472137 TCCCTTTGTTCCAAACTAATCGAAG 59.528 40.000 0.00 0.00 0.00 3.79
2270 2614 5.897377 ATCCCTTTGTTCCAAACTAATCG 57.103 39.130 0.00 0.00 0.00 3.34
2272 2616 9.100197 ACAATAATCCCTTTGTTCCAAACTAAT 57.900 29.630 0.00 0.00 32.28 1.73
2276 2620 8.364894 AGTAACAATAATCCCTTTGTTCCAAAC 58.635 33.333 4.47 0.00 43.14 2.93
2299 2643 8.087750 CCAAGGTTATTGAGCAAAATTTCAGTA 58.912 33.333 0.00 0.00 0.00 2.74
2385 2758 5.067936 ACGATGGTATTCGATCTCTCTGTTT 59.932 40.000 0.31 0.00 41.62 2.83
2395 2768 8.433421 AAATACTTTGAACGATGGTATTCGAT 57.567 30.769 0.31 0.00 41.62 3.59
2396 2769 7.837202 AAATACTTTGAACGATGGTATTCGA 57.163 32.000 0.31 0.00 41.62 3.71
2468 3071 2.320367 CGAGTGTCTGTCAACTAGTGC 58.680 52.381 0.00 0.00 0.00 4.40
2470 3073 1.269998 GCCGAGTGTCTGTCAACTAGT 59.730 52.381 0.00 0.00 0.00 2.57
2477 3080 4.251760 CACAGCCGAGTGTCTGTC 57.748 61.111 0.00 0.00 41.19 3.51
2483 3086 0.592247 GCAAAACACACAGCCGAGTG 60.592 55.000 0.00 0.00 44.93 3.51
2484 3087 0.748005 AGCAAAACACACAGCCGAGT 60.748 50.000 0.00 0.00 0.00 4.18
2485 3088 0.317269 CAGCAAAACACACAGCCGAG 60.317 55.000 0.00 0.00 0.00 4.63
2486 3089 1.726865 CAGCAAAACACACAGCCGA 59.273 52.632 0.00 0.00 0.00 5.54
2487 3090 1.945662 GCAGCAAAACACACAGCCG 60.946 57.895 0.00 0.00 0.00 5.52
2488 3091 0.459934 TTGCAGCAAAACACACAGCC 60.460 50.000 4.99 0.00 0.00 4.85
2489 3092 0.646895 GTTGCAGCAAAACACACAGC 59.353 50.000 10.11 0.00 0.00 4.40
2575 3201 4.454678 TGATGAACCAGTTGGATATCTGC 58.545 43.478 4.92 0.00 38.94 4.26
2627 3253 0.534427 TCGGCGTACATCTCCTCGAT 60.534 55.000 6.85 0.00 0.00 3.59
2697 3323 4.514577 ATTGAGAGGACGCCGCGG 62.515 66.667 24.05 24.05 0.00 6.46
2698 3324 3.257561 CATTGAGAGGACGCCGCG 61.258 66.667 12.14 12.14 0.00 6.46
2745 3377 3.010420 CCCTCGAAGGAAAACTGAATCC 58.990 50.000 0.00 0.00 37.67 3.01
2761 3393 2.058595 AACCGACCCATCTCCCTCG 61.059 63.158 0.00 0.00 0.00 4.63
2763 3395 1.995626 CCAACCGACCCATCTCCCT 60.996 63.158 0.00 0.00 0.00 4.20
2764 3396 1.345715 ATCCAACCGACCCATCTCCC 61.346 60.000 0.00 0.00 0.00 4.30
2786 3418 2.004733 GGGGTAAATTCACCGAAGACG 58.995 52.381 0.00 0.00 39.69 4.18
2793 3425 4.038282 AGAAAAACACGGGGTAAATTCACC 59.962 41.667 0.00 0.00 37.91 4.02
2796 3428 7.542534 AAAAAGAAAAACACGGGGTAAATTC 57.457 32.000 0.00 0.00 0.00 2.17
2823 3455 1.993370 CCGACCGAAGAAAGATCACAC 59.007 52.381 0.00 0.00 0.00 3.82
2901 3533 8.826293 AAGAGCTTCACTACCTAATAACTACT 57.174 34.615 0.00 0.00 0.00 2.57
2908 3540 5.416013 GGCAAAAAGAGCTTCACTACCTAAT 59.584 40.000 0.00 0.00 0.00 1.73
2909 3541 4.760204 GGCAAAAAGAGCTTCACTACCTAA 59.240 41.667 0.00 0.00 0.00 2.69
2910 3542 4.202419 TGGCAAAAAGAGCTTCACTACCTA 60.202 41.667 0.00 0.00 0.00 3.08
2911 3543 3.149981 GGCAAAAAGAGCTTCACTACCT 58.850 45.455 0.00 0.00 0.00 3.08
2948 3580 0.912487 AAACCCCCGGTCTCTGCATA 60.912 55.000 0.00 0.00 33.12 3.14
2950 3582 2.852075 AAACCCCCGGTCTCTGCA 60.852 61.111 0.00 0.00 33.12 4.41
2951 3583 2.046217 GAAACCCCCGGTCTCTGC 60.046 66.667 0.00 0.00 33.12 4.26
2952 3584 0.605589 GTTGAAACCCCCGGTCTCTG 60.606 60.000 0.00 0.00 33.12 3.35
2953 3585 1.759236 GTTGAAACCCCCGGTCTCT 59.241 57.895 0.00 0.00 33.12 3.10
2954 3586 1.303074 GGTTGAAACCCCCGGTCTC 60.303 63.158 0.00 0.00 43.43 3.36
2961 3593 5.898141 TCCGAAAAGGAGGTTGAAACCCC 62.898 52.174 8.62 9.56 45.98 4.95
2962 3594 2.750471 TCCGAAAAGGAGGTTGAAACCC 60.750 50.000 8.62 0.96 45.98 4.11
2985 3617 0.584876 GTGCACGCCGTAGTCTTTTT 59.415 50.000 0.00 0.00 0.00 1.94
2986 3618 1.226030 GGTGCACGCCGTAGTCTTTT 61.226 55.000 11.45 0.00 0.00 2.27
2987 3619 1.666872 GGTGCACGCCGTAGTCTTT 60.667 57.895 11.45 0.00 0.00 2.52
2988 3620 2.048503 GGTGCACGCCGTAGTCTT 60.049 61.111 11.45 0.00 0.00 3.01
2989 3621 4.065281 GGGTGCACGCCGTAGTCT 62.065 66.667 22.50 0.00 0.00 3.24
2990 3622 2.012902 ATAGGGTGCACGCCGTAGTC 62.013 60.000 28.26 3.57 33.14 2.59
2991 3623 1.610554 AATAGGGTGCACGCCGTAGT 61.611 55.000 28.26 13.03 33.14 2.73
2992 3624 0.461339 AAATAGGGTGCACGCCGTAG 60.461 55.000 28.26 0.00 33.14 3.51
2993 3625 0.741574 CAAATAGGGTGCACGCCGTA 60.742 55.000 28.26 16.53 34.00 4.02
2994 3626 2.038269 CAAATAGGGTGCACGCCGT 61.038 57.895 28.26 15.58 0.00 5.68
2995 3627 1.095228 ATCAAATAGGGTGCACGCCG 61.095 55.000 28.26 13.13 0.00 6.46
2996 3628 0.381801 CATCAAATAGGGTGCACGCC 59.618 55.000 28.26 21.01 0.00 5.68
2997 3629 1.378531 TCATCAAATAGGGTGCACGC 58.621 50.000 25.22 25.22 0.00 5.34
2998 3630 4.637483 ATTTCATCAAATAGGGTGCACG 57.363 40.909 11.45 0.00 29.81 5.34
2999 3631 5.964758 TGAATTTCATCAAATAGGGTGCAC 58.035 37.500 8.80 8.80 31.51 4.57
3000 3632 6.795144 ATGAATTTCATCAAATAGGGTGCA 57.205 33.333 6.06 0.00 29.59 4.57
3052 3684 5.235305 ACATTTTGACTCACAAGTGACAC 57.765 39.130 0.00 0.00 39.77 3.67
3071 3703 8.853077 TTTGTTAGACATCTCATCTCAAACAT 57.147 30.769 0.00 0.00 29.25 2.71
3120 3784 3.263170 TGGATAACCAGTTAGCAGCTTGA 59.737 43.478 0.00 0.00 41.77 3.02
3121 3785 3.609853 TGGATAACCAGTTAGCAGCTTG 58.390 45.455 0.00 0.00 41.77 4.01
3198 3862 3.119352 GGCACCAGATCTTGTCCATTTTC 60.119 47.826 0.00 0.00 0.00 2.29
3199 3863 2.827921 GGCACCAGATCTTGTCCATTTT 59.172 45.455 0.00 0.00 0.00 1.82
3200 3864 2.042162 AGGCACCAGATCTTGTCCATTT 59.958 45.455 13.95 0.00 0.00 2.32
3203 3867 1.555075 GTAGGCACCAGATCTTGTCCA 59.445 52.381 13.95 0.00 0.00 4.02
3209 3877 2.969628 AGCATAGTAGGCACCAGATCT 58.030 47.619 9.80 0.00 0.00 2.75
3220 3888 0.830444 TGCCCGGGGTAGCATAGTAG 60.830 60.000 25.28 0.00 33.08 2.57
3251 3919 6.605594 TGTACCTCAATTTTGGAAACAGAGTT 59.394 34.615 0.89 0.00 44.54 3.01
3261 3958 6.980397 GGCATATTTCTGTACCTCAATTTTGG 59.020 38.462 0.00 0.00 0.00 3.28
3270 3967 3.492102 ATGCGGCATATTTCTGTACCT 57.508 42.857 14.96 0.00 0.00 3.08
3283 3980 4.813235 GCCCACCCTTATGCGGCA 62.813 66.667 4.58 4.58 36.49 5.69
3301 4042 2.626149 ACCTATAGGCGAAGGTGTCCTT 60.626 50.000 19.25 0.28 44.53 3.36
3308 4049 0.314302 CGTCCACCTATAGGCGAAGG 59.686 60.000 19.25 14.91 39.32 3.46
3318 4059 1.331214 ACTTCGAAACCGTCCACCTA 58.669 50.000 0.00 0.00 0.00 3.08
3322 4063 2.607631 AGAAACTTCGAAACCGTCCA 57.392 45.000 0.00 0.00 0.00 4.02
3337 4078 1.511305 CTCTGCTCCGCGGTAGAAA 59.489 57.895 27.15 3.71 36.18 2.52
3375 4124 5.559035 CGTTGTTCCATTGAGTTTCTCTGAC 60.559 44.000 0.00 0.00 0.00 3.51
3378 4127 4.511826 GTCGTTGTTCCATTGAGTTTCTCT 59.488 41.667 0.00 0.00 0.00 3.10
3433 4184 5.730550 TGCTCCTTAAGTATGTGTACCTTG 58.269 41.667 0.97 0.00 0.00 3.61
3444 4195 3.435026 GGATGGGCATTGCTCCTTAAGTA 60.435 47.826 5.96 0.00 0.00 2.24
3448 4199 0.925558 TGGATGGGCATTGCTCCTTA 59.074 50.000 5.96 0.00 0.00 2.69
3482 4233 1.338200 ACAGCGAAAGAGGATCACCAC 60.338 52.381 0.00 0.00 37.82 4.16
3488 4239 3.347411 GCGTACAGCGAAAGAGGAT 57.653 52.632 0.00 0.00 44.77 3.24
3502 4253 1.342174 AGACGTTTCCTTTCCTGCGTA 59.658 47.619 0.00 0.00 32.56 4.42
3522 4273 2.304761 CCACAGCAAACCCTAGGAAGTA 59.695 50.000 11.48 0.00 0.00 2.24
3580 4348 2.113807 TGAGTAGCAGAGCACCATGAT 58.886 47.619 0.00 0.00 0.00 2.45
3594 4362 6.017400 TCTTTTTGGTACCGTACTGAGTAG 57.983 41.667 7.57 2.52 0.00 2.57
3657 4425 2.909457 GATCGCCCTGCCCCATTTCA 62.909 60.000 0.00 0.00 0.00 2.69
3689 4457 1.967319 GCTCCAAGCCATCCGATTAA 58.033 50.000 0.00 0.00 34.48 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.