Multiple sequence alignment - TraesCS4A01G289300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G289300 chr4A 100.000 6101 0 0 1 6101 593767038 593760938 0.000000e+00 11267.0
1 TraesCS4A01G289300 chr4A 95.238 189 9 0 13 201 112867765 112867577 3.750000e-77 300.0
2 TraesCS4A01G289300 chr4A 95.604 91 4 0 1500 1590 593765446 593765356 5.160000e-31 147.0
3 TraesCS4A01G289300 chr4A 95.604 91 4 0 1593 1683 593765539 593765449 5.160000e-31 147.0
4 TraesCS4A01G289300 chr4A 93.506 77 5 0 5503 5579 36624691 36624767 1.460000e-21 115.0
5 TraesCS4A01G289300 chr4A 100.000 29 0 0 6365 6393 593760674 593760646 3.000000e-03 54.7
6 TraesCS4A01G289300 chr4D 93.244 2250 89 26 1593 3797 9562187 9564418 0.000000e+00 3254.0
7 TraesCS4A01G289300 chr4D 89.428 1277 64 32 4805 6062 9565386 9566610 0.000000e+00 1544.0
8 TraesCS4A01G289300 chr4D 86.825 1351 92 52 3443 4736 9564064 9565385 0.000000e+00 1430.0
9 TraesCS4A01G289300 chr4D 94.855 447 18 4 900 1343 9561616 9562060 0.000000e+00 693.0
10 TraesCS4A01G289300 chr4B 96.016 1280 41 8 2499 3771 18423969 18425245 0.000000e+00 2073.0
11 TraesCS4A01G289300 chr4B 93.395 863 48 9 1595 2453 38614722 38615579 0.000000e+00 1269.0
12 TraesCS4A01G289300 chr4B 96.084 766 25 4 2499 3261 38615580 38616343 0.000000e+00 1243.0
13 TraesCS4A01G289300 chr4B 92.370 865 53 12 1593 2453 18423113 18423968 0.000000e+00 1219.0
14 TraesCS4A01G289300 chr4B 87.539 971 83 21 643 1590 38613855 38614810 0.000000e+00 1088.0
15 TraesCS4A01G289300 chr4B 89.655 754 56 7 3824 4563 18425243 18425988 0.000000e+00 941.0
16 TraesCS4A01G289300 chr4B 83.512 1025 99 39 275 1253 18421899 18422899 0.000000e+00 893.0
17 TraesCS4A01G289300 chr4B 86.767 801 68 26 4657 5445 18426063 18426837 0.000000e+00 857.0
18 TraesCS4A01G289300 chr4B 88.961 308 31 3 1284 1590 18422897 18423202 1.680000e-100 377.0
19 TraesCS4A01G289300 chr4B 96.000 50 0 1 5640 5687 252980282 252980233 5.310000e-11 80.5
20 TraesCS4A01G289300 chr5A 80.324 803 111 28 2554 3339 98034976 98035748 1.200000e-156 564.0
21 TraesCS4A01G289300 chr5A 91.053 190 13 1 11 200 403664107 403664292 2.960000e-63 254.0
22 TraesCS4A01G289300 chr5A 81.437 167 25 3 4141 4301 98036801 98036967 1.450000e-26 132.0
23 TraesCS4A01G289300 chr5A 96.875 32 1 0 1872 1903 98034250 98034281 3.000000e-03 54.7
24 TraesCS4A01G289300 chr5D 78.635 894 132 39 2554 3425 102034185 102033329 7.290000e-149 538.0
25 TraesCS4A01G289300 chr5D 80.059 341 45 13 1870 2198 102034869 102034540 1.390000e-56 231.0
26 TraesCS4A01G289300 chr5D 81.437 167 25 3 4141 4301 102032353 102032187 1.450000e-26 132.0
27 TraesCS4A01G289300 chr5D 80.247 81 9 3 1875 1949 102034906 102034827 3.000000e-03 54.7
28 TraesCS4A01G289300 chr7A 94.709 189 10 0 14 202 33887580 33887768 1.740000e-75 294.0
29 TraesCS4A01G289300 chr6B 94.681 188 9 1 14 201 25562379 25562193 2.250000e-74 291.0
30 TraesCS4A01G289300 chr5B 77.403 385 64 15 1870 2244 111203209 111202838 2.340000e-49 207.0
31 TraesCS4A01G289300 chr5B 88.034 117 14 0 5463 5579 429636550 429636666 8.640000e-29 139.0
32 TraesCS4A01G289300 chr5B 82.036 167 24 3 4141 4301 111200666 111200500 3.110000e-28 137.0
33 TraesCS4A01G289300 chr5B 96.000 50 0 1 5640 5687 673517702 673517653 5.310000e-11 80.5
34 TraesCS4A01G289300 chr5B 80.247 81 9 3 1875 1949 111203246 111203167 3.000000e-03 54.7
35 TraesCS4A01G289300 chr2B 85.600 125 15 3 5456 5579 194992628 194992750 1.870000e-25 128.0
36 TraesCS4A01G289300 chr3B 84.034 119 16 3 5463 5579 82824273 82824390 1.880000e-20 111.0
37 TraesCS4A01G289300 chr1D 84.685 111 14 3 5646 5753 351109450 351109340 2.440000e-19 108.0
38 TraesCS4A01G289300 chr1D 80.992 121 10 5 5646 5753 402123315 402123195 4.110000e-12 84.2
39 TraesCS4A01G289300 chr3D 82.500 120 15 3 5642 5758 12457677 12457793 4.080000e-17 100.0
40 TraesCS4A01G289300 chr3A 84.314 102 12 2 5480 5577 345579235 345579336 5.280000e-16 97.1
41 TraesCS4A01G289300 chr3A 83.838 99 13 1 5484 5579 345578959 345579057 2.450000e-14 91.6
42 TraesCS4A01G289300 chr3A 81.148 122 12 7 5640 5753 699856678 699856796 3.180000e-13 87.9
43 TraesCS4A01G289300 chr7D 96.000 50 0 1 5640 5687 630308054 630308005 5.310000e-11 80.5
44 TraesCS4A01G289300 chr7D 89.655 58 2 3 5640 5695 522153614 522153559 3.200000e-08 71.3
45 TraesCS4A01G289300 chr2D 94.231 52 0 2 5640 5689 547148472 547148522 6.870000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G289300 chr4A 593760646 593767038 6392 True 2903.925000 11267 97.802000 1 6393 4 chr4A.!!$R2 6392
1 TraesCS4A01G289300 chr4D 9561616 9566610 4994 False 1730.250000 3254 91.088000 900 6062 4 chr4D.!!$F1 5162
2 TraesCS4A01G289300 chr4B 38613855 38616343 2488 False 1200.000000 1269 92.339333 643 3261 3 chr4B.!!$F2 2618
3 TraesCS4A01G289300 chr4B 18421899 18426837 4938 False 1060.000000 2073 89.546833 275 5445 6 chr4B.!!$F1 5170
4 TraesCS4A01G289300 chr5A 98034250 98036967 2717 False 250.233333 564 86.212000 1872 4301 3 chr5A.!!$F2 2429
5 TraesCS4A01G289300 chr5D 102032187 102034906 2719 True 238.925000 538 80.094500 1870 4301 4 chr5D.!!$R1 2431

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.033090 CTGCTCAGCTCACAGACACA 59.967 55.0 0.00 0.00 33.10 3.72 F
235 236 0.036732 TCGGGATTGAGCTTGCAACT 59.963 50.0 0.00 0.00 0.00 3.16 F
236 237 0.169672 CGGGATTGAGCTTGCAACTG 59.830 55.0 0.00 0.00 0.00 3.16 F
244 245 0.322008 AGCTTGCAACTGTAGGAGCC 60.322 55.0 0.00 0.00 0.00 4.70 F
1429 1500 0.397941 TCTGGAACTTGCCACAGAGG 59.602 55.0 0.00 0.00 35.24 3.69 F
1619 1690 0.108945 GCTTTGTCTTCATGGCAGCC 60.109 55.0 3.66 3.66 0.00 4.85 F
3010 3134 0.313987 TGACTGTGCGTCGTCAAGAT 59.686 50.0 0.00 0.00 45.87 2.40 F
3979 4489 0.037605 GGTCTCGTTCCCGTTCATGT 60.038 55.0 0.00 0.00 35.01 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1600 1671 0.108945 GGCTGCCATGAAGACAAAGC 60.109 55.000 15.17 0.00 0.00 3.51 R
1614 1685 0.752743 TAGGTGATTGCCATGGCTGC 60.753 55.000 35.53 24.01 42.51 5.25 R
1615 1686 1.766494 TTAGGTGATTGCCATGGCTG 58.234 50.000 35.53 0.00 42.51 4.85 R
1616 1687 2.761786 ATTAGGTGATTGCCATGGCT 57.238 45.000 35.53 18.67 42.51 4.75 R
3382 3513 0.541863 CAGAATACCCCCTGCGAAGT 59.458 55.000 0.00 0.00 0.00 3.01 R
3466 3626 1.929836 GCATTTCAGAGTACGCAGGAG 59.070 52.381 0.00 0.00 0.00 3.69 R
4832 5486 1.008938 AGGGCCTTGTATGAGAGAGGT 59.991 52.381 0.00 0.00 0.00 3.85 R
5735 6426 0.307760 CGTTTGGTGACCAAGCTCAC 59.692 55.000 25.16 16.20 44.84 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.902556 GGAGCTACGTTAGGGCCAA 59.097 57.895 6.18 0.00 0.00 4.52
39 40 0.251073 GGAGCTACGTTAGGGCCAAA 59.749 55.000 6.18 0.00 0.00 3.28
40 41 1.366679 GAGCTACGTTAGGGCCAAAC 58.633 55.000 6.18 7.68 0.00 2.93
41 42 0.688487 AGCTACGTTAGGGCCAAACA 59.312 50.000 17.50 1.73 0.00 2.83
42 43 1.072648 AGCTACGTTAGGGCCAAACAA 59.927 47.619 17.50 6.56 0.00 2.83
44 45 2.081462 CTACGTTAGGGCCAAACAAGG 58.919 52.381 17.50 8.07 0.00 3.61
68 69 2.600173 CCCGCCCAGCTTTTCCAA 60.600 61.111 0.00 0.00 0.00 3.53
69 70 2.206536 CCCGCCCAGCTTTTCCAAA 61.207 57.895 0.00 0.00 0.00 3.28
70 71 1.745264 CCGCCCAGCTTTTCCAAAA 59.255 52.632 0.00 0.00 0.00 2.44
71 72 0.105778 CCGCCCAGCTTTTCCAAAAA 59.894 50.000 0.00 0.00 0.00 1.94
105 106 3.521995 GCTTACTGCTCAGCTCACA 57.478 52.632 0.00 0.00 38.95 3.58
106 107 1.357907 GCTTACTGCTCAGCTCACAG 58.642 55.000 0.00 5.77 38.95 3.66
107 108 1.067283 GCTTACTGCTCAGCTCACAGA 60.067 52.381 12.79 0.00 38.95 3.41
108 109 2.605030 CTTACTGCTCAGCTCACAGAC 58.395 52.381 12.79 0.00 35.38 3.51
109 110 1.620822 TACTGCTCAGCTCACAGACA 58.379 50.000 12.79 0.00 35.38 3.41
110 111 0.033228 ACTGCTCAGCTCACAGACAC 59.967 55.000 12.79 0.00 35.38 3.67
111 112 0.033090 CTGCTCAGCTCACAGACACA 59.967 55.000 0.00 0.00 33.10 3.72
112 113 0.249615 TGCTCAGCTCACAGACACAC 60.250 55.000 0.00 0.00 0.00 3.82
113 114 0.249615 GCTCAGCTCACAGACACACA 60.250 55.000 0.00 0.00 0.00 3.72
114 115 1.807755 GCTCAGCTCACAGACACACAA 60.808 52.381 0.00 0.00 0.00 3.33
115 116 2.133553 CTCAGCTCACAGACACACAAG 58.866 52.381 0.00 0.00 0.00 3.16
116 117 1.756538 TCAGCTCACAGACACACAAGA 59.243 47.619 0.00 0.00 0.00 3.02
117 118 1.863454 CAGCTCACAGACACACAAGAC 59.137 52.381 0.00 0.00 0.00 3.01
118 119 1.759445 AGCTCACAGACACACAAGACT 59.241 47.619 0.00 0.00 0.00 3.24
119 120 2.959030 AGCTCACAGACACACAAGACTA 59.041 45.455 0.00 0.00 0.00 2.59
120 121 3.005261 AGCTCACAGACACACAAGACTAG 59.995 47.826 0.00 0.00 0.00 2.57
121 122 3.243569 GCTCACAGACACACAAGACTAGT 60.244 47.826 0.00 0.00 0.00 2.57
122 123 4.541779 CTCACAGACACACAAGACTAGTC 58.458 47.826 15.41 15.41 0.00 2.59
123 124 3.951680 TCACAGACACACAAGACTAGTCA 59.048 43.478 24.44 0.00 0.00 3.41
124 125 4.036852 TCACAGACACACAAGACTAGTCAG 59.963 45.833 24.44 17.83 0.00 3.51
125 126 3.243569 ACAGACACACAAGACTAGTCAGC 60.244 47.826 24.44 0.00 0.00 4.26
126 127 2.959030 AGACACACAAGACTAGTCAGCA 59.041 45.455 24.44 0.00 0.00 4.41
127 128 3.576118 AGACACACAAGACTAGTCAGCAT 59.424 43.478 24.44 5.26 0.00 3.79
128 129 3.657634 ACACACAAGACTAGTCAGCATG 58.342 45.455 24.44 17.93 37.54 4.06
129 130 2.414481 CACACAAGACTAGTCAGCATGC 59.586 50.000 24.44 10.51 34.76 4.06
130 131 2.037641 ACACAAGACTAGTCAGCATGCA 59.962 45.455 24.44 0.00 34.76 3.96
131 132 2.671888 CACAAGACTAGTCAGCATGCAG 59.328 50.000 24.44 12.90 34.76 4.41
132 133 1.664659 CAAGACTAGTCAGCATGCAGC 59.335 52.381 24.44 9.24 46.19 5.25
145 146 4.835199 GCATGCAGCAATTCAAGTTTAG 57.165 40.909 14.21 0.00 44.79 1.85
146 147 3.061697 GCATGCAGCAATTCAAGTTTAGC 59.938 43.478 14.21 0.00 44.79 3.09
147 148 4.239304 CATGCAGCAATTCAAGTTTAGCA 58.761 39.130 0.00 0.00 0.00 3.49
148 149 3.641648 TGCAGCAATTCAAGTTTAGCAC 58.358 40.909 0.00 0.00 0.00 4.40
149 150 2.989166 GCAGCAATTCAAGTTTAGCACC 59.011 45.455 0.00 0.00 0.00 5.01
150 151 3.552684 GCAGCAATTCAAGTTTAGCACCA 60.553 43.478 0.00 0.00 0.00 4.17
151 152 4.813027 CAGCAATTCAAGTTTAGCACCAT 58.187 39.130 0.00 0.00 0.00 3.55
152 153 4.624024 CAGCAATTCAAGTTTAGCACCATG 59.376 41.667 0.00 0.00 0.00 3.66
153 154 4.281688 AGCAATTCAAGTTTAGCACCATGT 59.718 37.500 0.00 0.00 0.00 3.21
154 155 4.990426 GCAATTCAAGTTTAGCACCATGTT 59.010 37.500 0.00 0.00 0.00 2.71
155 156 5.466393 GCAATTCAAGTTTAGCACCATGTTT 59.534 36.000 0.00 0.00 0.00 2.83
156 157 6.644592 GCAATTCAAGTTTAGCACCATGTTTA 59.355 34.615 0.00 0.00 0.00 2.01
157 158 7.148755 GCAATTCAAGTTTAGCACCATGTTTAG 60.149 37.037 0.00 0.00 0.00 1.85
158 159 5.371115 TCAAGTTTAGCACCATGTTTAGC 57.629 39.130 0.00 0.00 0.00 3.09
159 160 4.824537 TCAAGTTTAGCACCATGTTTAGCA 59.175 37.500 0.00 0.00 0.00 3.49
160 161 5.300539 TCAAGTTTAGCACCATGTTTAGCAA 59.699 36.000 0.00 0.00 0.00 3.91
161 162 5.121221 AGTTTAGCACCATGTTTAGCAAC 57.879 39.130 0.00 0.00 0.00 4.17
162 163 4.022329 AGTTTAGCACCATGTTTAGCAACC 60.022 41.667 0.00 0.00 31.02 3.77
163 164 2.292828 AGCACCATGTTTAGCAACCT 57.707 45.000 0.00 0.00 31.02 3.50
164 165 1.888512 AGCACCATGTTTAGCAACCTG 59.111 47.619 0.00 0.00 31.02 4.00
167 168 0.532115 CCATGTTTAGCAACCTGGCC 59.468 55.000 0.00 0.00 40.54 5.36
168 169 0.532115 CATGTTTAGCAACCTGGCCC 59.468 55.000 0.00 0.00 31.02 5.80
169 170 0.965363 ATGTTTAGCAACCTGGCCCG 60.965 55.000 0.00 0.00 31.02 6.13
170 171 2.675075 TTTAGCAACCTGGCCCGC 60.675 61.111 0.00 0.00 0.00 6.13
171 172 4.733542 TTAGCAACCTGGCCCGCC 62.734 66.667 0.00 0.00 0.00 6.13
180 181 4.932105 TGGCCCGCCCAGCTTTTT 62.932 61.111 0.00 0.00 39.18 1.94
181 182 4.377708 GGCCCGCCCAGCTTTTTG 62.378 66.667 0.00 0.00 0.00 2.44
193 194 0.169009 GCTTTTTGCTGGTAGCTCCG 59.831 55.000 0.00 0.00 42.97 4.63
194 195 0.169009 CTTTTTGCTGGTAGCTCCGC 59.831 55.000 0.00 0.99 42.97 5.54
195 196 1.241315 TTTTTGCTGGTAGCTCCGCC 61.241 55.000 0.00 0.00 42.97 6.13
196 197 2.404566 TTTTGCTGGTAGCTCCGCCA 62.405 55.000 0.00 0.00 42.97 5.69
197 198 3.605749 TTGCTGGTAGCTCCGCCAC 62.606 63.158 0.00 0.00 42.97 5.01
198 199 3.775654 GCTGGTAGCTCCGCCACT 61.776 66.667 0.00 0.00 38.45 4.00
199 200 2.185350 CTGGTAGCTCCGCCACTG 59.815 66.667 0.00 0.00 39.52 3.66
200 201 3.376935 CTGGTAGCTCCGCCACTGG 62.377 68.421 0.00 0.00 39.52 4.00
201 202 3.391382 GGTAGCTCCGCCACTGGT 61.391 66.667 0.00 0.00 0.00 4.00
202 203 2.125512 GTAGCTCCGCCACTGGTG 60.126 66.667 1.13 1.13 0.00 4.17
217 218 2.813908 GTGGCCACCATCGTCGTC 60.814 66.667 26.31 0.00 35.28 4.20
218 219 4.429212 TGGCCACCATCGTCGTCG 62.429 66.667 0.00 0.00 38.55 5.12
221 222 3.445687 CCACCATCGTCGTCGGGA 61.446 66.667 1.55 0.00 37.69 5.14
222 223 2.782222 CCACCATCGTCGTCGGGAT 61.782 63.158 1.55 0.00 37.69 3.85
223 224 1.141019 CACCATCGTCGTCGGGATT 59.859 57.895 1.55 0.00 37.69 3.01
224 225 1.141019 ACCATCGTCGTCGGGATTG 59.859 57.895 1.55 0.00 37.69 2.67
225 226 1.317431 ACCATCGTCGTCGGGATTGA 61.317 55.000 1.55 0.00 37.69 2.57
226 227 0.595053 CCATCGTCGTCGGGATTGAG 60.595 60.000 1.55 0.00 37.69 3.02
227 228 1.065928 ATCGTCGTCGGGATTGAGC 59.934 57.895 1.55 0.00 37.69 4.26
228 229 1.384989 ATCGTCGTCGGGATTGAGCT 61.385 55.000 1.55 0.00 37.69 4.09
229 230 1.153823 CGTCGTCGGGATTGAGCTT 60.154 57.895 0.00 0.00 0.00 3.74
230 231 1.413767 CGTCGTCGGGATTGAGCTTG 61.414 60.000 0.00 0.00 0.00 4.01
231 232 1.447838 TCGTCGGGATTGAGCTTGC 60.448 57.895 0.00 0.00 0.00 4.01
232 233 1.741401 CGTCGGGATTGAGCTTGCA 60.741 57.895 0.00 0.00 0.00 4.08
233 234 1.298157 CGTCGGGATTGAGCTTGCAA 61.298 55.000 0.00 0.00 0.00 4.08
234 235 0.169009 GTCGGGATTGAGCTTGCAAC 59.831 55.000 0.00 0.00 0.00 4.17
235 236 0.036732 TCGGGATTGAGCTTGCAACT 59.963 50.000 0.00 0.00 0.00 3.16
236 237 0.169672 CGGGATTGAGCTTGCAACTG 59.830 55.000 0.00 0.00 0.00 3.16
237 238 1.251251 GGGATTGAGCTTGCAACTGT 58.749 50.000 0.00 0.00 0.00 3.55
238 239 2.436417 GGGATTGAGCTTGCAACTGTA 58.564 47.619 0.00 0.00 0.00 2.74
239 240 2.421424 GGGATTGAGCTTGCAACTGTAG 59.579 50.000 0.00 0.00 0.00 2.74
240 241 2.421424 GGATTGAGCTTGCAACTGTAGG 59.579 50.000 0.00 0.00 0.00 3.18
241 242 2.928801 TTGAGCTTGCAACTGTAGGA 57.071 45.000 0.00 0.00 0.00 2.94
242 243 2.462456 TGAGCTTGCAACTGTAGGAG 57.538 50.000 0.00 0.00 0.00 3.69
243 244 1.082690 GAGCTTGCAACTGTAGGAGC 58.917 55.000 0.00 0.00 0.00 4.70
244 245 0.322008 AGCTTGCAACTGTAGGAGCC 60.322 55.000 0.00 0.00 0.00 4.70
245 246 0.606401 GCTTGCAACTGTAGGAGCCA 60.606 55.000 0.00 0.00 0.00 4.75
246 247 1.952367 GCTTGCAACTGTAGGAGCCAT 60.952 52.381 0.00 0.00 0.00 4.40
247 248 2.012673 CTTGCAACTGTAGGAGCCATC 58.987 52.381 0.00 0.00 0.00 3.51
263 264 3.565764 CCATCCTTGGCTATCTCACAA 57.434 47.619 0.00 0.00 35.85 3.33
264 265 3.209410 CCATCCTTGGCTATCTCACAAC 58.791 50.000 0.00 0.00 35.85 3.32
265 266 3.118112 CCATCCTTGGCTATCTCACAACT 60.118 47.826 0.00 0.00 35.85 3.16
266 267 4.101585 CCATCCTTGGCTATCTCACAACTA 59.898 45.833 0.00 0.00 35.85 2.24
267 268 5.295950 CATCCTTGGCTATCTCACAACTAG 58.704 45.833 0.00 0.00 0.00 2.57
268 269 3.706594 TCCTTGGCTATCTCACAACTAGG 59.293 47.826 0.00 0.00 0.00 3.02
269 270 3.462021 CTTGGCTATCTCACAACTAGGC 58.538 50.000 0.00 0.00 38.24 3.93
270 271 2.752030 TGGCTATCTCACAACTAGGCT 58.248 47.619 0.00 0.00 38.48 4.58
271 272 3.910989 TGGCTATCTCACAACTAGGCTA 58.089 45.455 0.00 0.00 38.48 3.93
272 273 3.637229 TGGCTATCTCACAACTAGGCTAC 59.363 47.826 0.00 0.00 38.48 3.58
273 274 3.304794 GGCTATCTCACAACTAGGCTACG 60.305 52.174 0.00 0.00 35.72 3.51
278 279 1.067846 TCACAACTAGGCTACGTGCTG 60.068 52.381 0.00 0.00 42.39 4.41
287 288 0.737715 GCTACGTGCTGGGACTTCAG 60.738 60.000 0.00 0.00 38.95 3.02
309 310 1.376609 CCTATTGTCGCTGGCCAACC 61.377 60.000 7.01 0.00 0.00 3.77
329 330 1.846007 GCCACAACATATGTTCCCCA 58.154 50.000 18.25 0.00 41.46 4.96
330 331 2.387757 GCCACAACATATGTTCCCCAT 58.612 47.619 18.25 0.00 41.46 4.00
333 334 4.757594 CCACAACATATGTTCCCCATTTG 58.242 43.478 18.25 8.11 41.46 2.32
374 380 1.382557 GGGATTTGGGCGGGGAAAT 60.383 57.895 0.00 0.00 0.00 2.17
378 384 2.490902 GGATTTGGGCGGGGAAATAGAT 60.491 50.000 0.00 0.00 0.00 1.98
407 414 7.496529 AGAATATGAATGTTGGGTTGTATCG 57.503 36.000 0.00 0.00 0.00 2.92
426 433 2.635915 TCGGTTTTCTAGGTGATGTGGT 59.364 45.455 0.00 0.00 0.00 4.16
432 439 0.615331 CTAGGTGATGTGGTGCCACT 59.385 55.000 20.46 7.76 46.30 4.00
453 460 6.094881 CCACTTAGTTCAGAACCAGTCAAAAA 59.905 38.462 9.85 0.00 0.00 1.94
462 469 6.998074 TCAGAACCAGTCAAAAACACATAGAT 59.002 34.615 0.00 0.00 0.00 1.98
464 471 6.772716 AGAACCAGTCAAAAACACATAGATGT 59.227 34.615 0.00 0.00 42.84 3.06
499 506 2.158667 GGTTTTGAGAGTTGAGGGTGGA 60.159 50.000 0.00 0.00 0.00 4.02
504 511 2.104792 TGAGAGTTGAGGGTGGAACTTG 59.895 50.000 0.00 0.00 36.74 3.16
505 512 1.421646 AGAGTTGAGGGTGGAACTTGG 59.578 52.381 0.00 0.00 36.74 3.61
519 526 3.315470 GGAACTTGGACCAAACTGAAGTC 59.685 47.826 8.59 0.00 0.00 3.01
534 542 5.445964 ACTGAAGTCAAGGGTTGTAATTGT 58.554 37.500 0.00 0.00 0.00 2.71
541 549 6.653740 AGTCAAGGGTTGTAATTGTACTTAGC 59.346 38.462 0.00 0.00 0.00 3.09
792 842 6.716284 ACCCCAATGAAAAACAGAAAGAAAA 58.284 32.000 0.00 0.00 0.00 2.29
793 843 7.171653 ACCCCAATGAAAAACAGAAAGAAAAA 58.828 30.769 0.00 0.00 0.00 1.94
865 917 4.083862 GTCGACTGGGGCAGGGAC 62.084 72.222 8.70 0.00 35.51 4.46
888 940 5.542251 ACTTTGGGCCTTGCTTTTAGAATTA 59.458 36.000 4.53 0.00 0.00 1.40
902 957 6.445357 TTTAGAATTATCGAAACAAGGCCC 57.555 37.500 0.00 0.00 0.00 5.80
953 1009 1.075374 ACAGGCCCACAAGATAGCAAA 59.925 47.619 0.00 0.00 0.00 3.68
998 1054 2.936032 GCCACCCCCACCTCTCTT 60.936 66.667 0.00 0.00 0.00 2.85
1104 1167 3.009115 CGCTTTCCTCCCTCCCCA 61.009 66.667 0.00 0.00 0.00 4.96
1122 1185 4.155733 CCTGTATCCGCGTGCCCA 62.156 66.667 4.92 0.00 0.00 5.36
1326 1397 2.119886 CCCCAGAGAGGCTCGTTAG 58.880 63.158 9.22 0.66 35.36 2.34
1338 1409 1.661112 GCTCGTTAGGCTGTTCATGTC 59.339 52.381 0.00 0.00 0.00 3.06
1346 1417 0.588252 GCTGTTCATGTCACGCTGTT 59.412 50.000 0.00 0.00 0.00 3.16
1350 1421 2.877786 TGTTCATGTCACGCTGTTCATT 59.122 40.909 0.00 0.00 0.00 2.57
1351 1422 4.061596 TGTTCATGTCACGCTGTTCATTA 58.938 39.130 0.00 0.00 0.00 1.90
1352 1423 4.513318 TGTTCATGTCACGCTGTTCATTAA 59.487 37.500 0.00 0.00 0.00 1.40
1380 1451 4.559251 CACGCTGAATCAACTGTACTAGAC 59.441 45.833 0.00 0.00 0.00 2.59
1429 1500 0.397941 TCTGGAACTTGCCACAGAGG 59.602 55.000 0.00 0.00 35.24 3.69
1465 1536 7.716123 TCTTGGTATTGAAAACCGTAGAAAAGA 59.284 33.333 0.00 0.00 40.08 2.52
1521 1592 5.179929 GGGAAATTTTGCTTTGTCTTCATGG 59.820 40.000 0.53 0.00 0.00 3.66
1571 1642 9.590451 TCCTTCAAGAAAATTCATGCATTATTC 57.410 29.630 0.00 0.00 0.00 1.75
1572 1643 8.823818 CCTTCAAGAAAATTCATGCATTATTCC 58.176 33.333 0.00 0.00 0.00 3.01
1573 1644 8.721019 TTCAAGAAAATTCATGCATTATTCCC 57.279 30.769 0.00 0.00 0.00 3.97
1574 1645 6.979817 TCAAGAAAATTCATGCATTATTCCCG 59.020 34.615 0.00 0.00 0.00 5.14
1575 1646 6.469782 AGAAAATTCATGCATTATTCCCGT 57.530 33.333 0.00 0.00 0.00 5.28
1576 1647 6.275335 AGAAAATTCATGCATTATTCCCGTG 58.725 36.000 0.00 0.00 0.00 4.94
1577 1648 4.589216 AATTCATGCATTATTCCCGTGG 57.411 40.909 0.00 0.00 0.00 4.94
1578 1649 2.727123 TCATGCATTATTCCCGTGGT 57.273 45.000 0.00 0.00 0.00 4.16
1579 1650 2.296792 TCATGCATTATTCCCGTGGTG 58.703 47.619 0.00 0.00 0.00 4.17
1580 1651 1.032014 ATGCATTATTCCCGTGGTGC 58.968 50.000 0.00 0.00 0.00 5.01
1581 1652 1.355210 GCATTATTCCCGTGGTGCG 59.645 57.895 0.00 0.00 40.95 5.34
1582 1653 1.092921 GCATTATTCCCGTGGTGCGA 61.093 55.000 0.00 0.00 44.77 5.10
1583 1654 0.655733 CATTATTCCCGTGGTGCGAC 59.344 55.000 0.00 0.00 44.77 5.19
1584 1655 0.463116 ATTATTCCCGTGGTGCGACC 60.463 55.000 0.00 0.00 44.77 4.79
1595 1666 2.500509 GGTGCGACCAAACAATGAAA 57.499 45.000 0.00 0.00 38.42 2.69
1596 1667 3.025287 GGTGCGACCAAACAATGAAAT 57.975 42.857 0.00 0.00 38.42 2.17
1597 1668 3.389221 GGTGCGACCAAACAATGAAATT 58.611 40.909 0.00 0.00 38.42 1.82
1598 1669 3.807071 GGTGCGACCAAACAATGAAATTT 59.193 39.130 0.00 0.00 38.42 1.82
1599 1670 4.272261 GGTGCGACCAAACAATGAAATTTT 59.728 37.500 0.00 0.00 38.42 1.82
1600 1671 5.196825 GTGCGACCAAACAATGAAATTTTG 58.803 37.500 0.00 0.00 31.22 2.44
1601 1672 4.210629 GCGACCAAACAATGAAATTTTGC 58.789 39.130 0.00 0.00 31.22 3.68
1602 1673 4.024977 GCGACCAAACAATGAAATTTTGCT 60.025 37.500 0.00 0.00 31.22 3.91
1603 1674 5.503846 GCGACCAAACAATGAAATTTTGCTT 60.504 36.000 0.00 0.00 31.22 3.91
1604 1675 6.485393 CGACCAAACAATGAAATTTTGCTTT 58.515 32.000 0.00 0.00 31.22 3.51
1605 1676 6.411492 CGACCAAACAATGAAATTTTGCTTTG 59.589 34.615 0.00 0.00 31.22 2.77
1606 1677 7.155655 ACCAAACAATGAAATTTTGCTTTGT 57.844 28.000 0.00 0.00 31.22 2.83
1607 1678 7.249858 ACCAAACAATGAAATTTTGCTTTGTC 58.750 30.769 9.94 0.00 31.22 3.18
1608 1679 7.121020 ACCAAACAATGAAATTTTGCTTTGTCT 59.879 29.630 9.94 0.00 31.22 3.41
1609 1680 7.969508 CCAAACAATGAAATTTTGCTTTGTCTT 59.030 29.630 9.94 6.21 31.22 3.01
1610 1681 9.002080 CAAACAATGAAATTTTGCTTTGTCTTC 57.998 29.630 9.94 0.00 31.22 2.87
1611 1682 7.846644 ACAATGAAATTTTGCTTTGTCTTCA 57.153 28.000 0.00 0.00 31.22 3.02
1612 1683 8.441312 ACAATGAAATTTTGCTTTGTCTTCAT 57.559 26.923 0.00 0.00 31.22 2.57
1613 1684 8.339714 ACAATGAAATTTTGCTTTGTCTTCATG 58.660 29.630 0.00 0.00 31.22 3.07
1614 1685 6.847956 TGAAATTTTGCTTTGTCTTCATGG 57.152 33.333 0.00 0.00 0.00 3.66
1615 1686 5.236911 TGAAATTTTGCTTTGTCTTCATGGC 59.763 36.000 0.00 0.00 0.00 4.40
1616 1687 3.815856 TTTTGCTTTGTCTTCATGGCA 57.184 38.095 0.00 0.00 32.77 4.92
1617 1688 3.374220 TTTGCTTTGTCTTCATGGCAG 57.626 42.857 0.00 0.00 34.77 4.85
1618 1689 0.599558 TGCTTTGTCTTCATGGCAGC 59.400 50.000 0.00 0.00 31.70 5.25
1619 1690 0.108945 GCTTTGTCTTCATGGCAGCC 60.109 55.000 3.66 3.66 0.00 4.85
1620 1691 1.250328 CTTTGTCTTCATGGCAGCCA 58.750 50.000 18.99 18.99 38.19 4.75
1621 1692 1.822990 CTTTGTCTTCATGGCAGCCAT 59.177 47.619 22.36 22.36 46.37 4.40
1631 1702 2.497770 GCAGCCATGGCAATCACC 59.502 61.111 37.18 14.88 44.88 4.02
1632 1703 2.056223 GCAGCCATGGCAATCACCT 61.056 57.895 37.18 13.31 44.88 4.00
1633 1704 0.752743 GCAGCCATGGCAATCACCTA 60.753 55.000 37.18 0.00 44.88 3.08
1634 1705 1.766494 CAGCCATGGCAATCACCTAA 58.234 50.000 37.18 0.00 44.88 2.69
1635 1706 2.313317 CAGCCATGGCAATCACCTAAT 58.687 47.619 37.18 10.88 44.88 1.73
1636 1707 3.489355 CAGCCATGGCAATCACCTAATA 58.511 45.455 37.18 0.00 44.88 0.98
1637 1708 3.890756 CAGCCATGGCAATCACCTAATAA 59.109 43.478 37.18 0.00 44.88 1.40
1638 1709 4.525487 CAGCCATGGCAATCACCTAATAAT 59.475 41.667 37.18 9.60 44.88 1.28
1639 1710 4.768968 AGCCATGGCAATCACCTAATAATC 59.231 41.667 37.18 2.60 44.88 1.75
1640 1711 4.082026 GCCATGGCAATCACCTAATAATCC 60.082 45.833 32.08 0.00 41.49 3.01
1641 1712 5.327732 CCATGGCAATCACCTAATAATCCT 58.672 41.667 0.00 0.00 0.00 3.24
1642 1713 5.776716 CCATGGCAATCACCTAATAATCCTT 59.223 40.000 0.00 0.00 0.00 3.36
1643 1714 6.071728 CCATGGCAATCACCTAATAATCCTTC 60.072 42.308 0.00 0.00 0.00 3.46
1644 1715 6.012337 TGGCAATCACCTAATAATCCTTCA 57.988 37.500 0.00 0.00 0.00 3.02
1645 1716 6.430864 TGGCAATCACCTAATAATCCTTCAA 58.569 36.000 0.00 0.00 0.00 2.69
1646 1717 6.547141 TGGCAATCACCTAATAATCCTTCAAG 59.453 38.462 0.00 0.00 0.00 3.02
1647 1718 6.772716 GGCAATCACCTAATAATCCTTCAAGA 59.227 38.462 0.00 0.00 0.00 3.02
1648 1719 7.285401 GGCAATCACCTAATAATCCTTCAAGAA 59.715 37.037 0.00 0.00 0.00 2.52
1649 1720 8.686334 GCAATCACCTAATAATCCTTCAAGAAA 58.314 33.333 0.00 0.00 0.00 2.52
1692 1763 5.092781 GGTGCGACCAAACAGTTTATAATG 58.907 41.667 0.00 0.00 38.42 1.90
1727 1801 5.469084 ACCTTCTTCGGTGTTTTCAATCTAC 59.531 40.000 0.00 0.00 35.52 2.59
1822 1897 0.732571 GGGCCGTAACATGTCATGTG 59.267 55.000 19.08 7.83 44.07 3.21
1823 1898 0.732571 GGCCGTAACATGTCATGTGG 59.267 55.000 19.08 16.13 44.07 4.17
2000 2078 3.285484 CCATTGAGCTGCAGGTAGAATT 58.715 45.455 20.22 1.58 0.00 2.17
2036 2114 2.037772 ACAGCTTTCCTGATGACTTCGT 59.962 45.455 0.00 0.00 44.64 3.85
2204 2288 4.565564 CAGGTAGGTTTTATGTACTCGCAC 59.434 45.833 0.00 0.00 0.00 5.34
2388 2501 4.148128 TGGTGTGATTTTGGTTTGCAAT 57.852 36.364 0.00 0.00 0.00 3.56
2469 2583 6.266168 TCATGTGCTTCGGTGATTAATTTT 57.734 33.333 0.00 0.00 0.00 1.82
2538 2652 4.336433 CCTTGTCTTGCGTATTCATCCATT 59.664 41.667 0.00 0.00 0.00 3.16
2550 2665 8.414003 GCGTATTCATCCATTCCTATGATAGTA 58.586 37.037 0.00 0.00 32.40 1.82
2594 2709 4.269183 CAGGGTAGTATTGGTTTGATGCA 58.731 43.478 0.00 0.00 0.00 3.96
2973 3097 3.890756 ACACTTGCTTCATGTTTGATGGA 59.109 39.130 0.00 0.00 0.00 3.41
3000 3124 2.350192 TGTGTAAGTTGTTGACTGTGCG 59.650 45.455 0.00 0.00 39.00 5.34
3010 3134 0.313987 TGACTGTGCGTCGTCAAGAT 59.686 50.000 0.00 0.00 45.87 2.40
3080 3204 5.395768 GCCCACACACTCTATGAATACTTCT 60.396 44.000 0.00 0.00 0.00 2.85
3149 3280 8.390854 ACTTTGTCTAATGAAGTCGTTATACG 57.609 34.615 0.00 0.00 44.19 3.06
3492 3652 4.119862 TGCGTACTCTGAAATGCTAATCC 58.880 43.478 5.72 0.00 0.00 3.01
3524 3730 6.418101 TGAAAGCTTCATTCTATTAGGCTGT 58.582 36.000 0.00 0.00 34.08 4.40
3525 3731 6.886459 TGAAAGCTTCATTCTATTAGGCTGTT 59.114 34.615 0.00 0.00 34.08 3.16
3526 3732 7.394359 TGAAAGCTTCATTCTATTAGGCTGTTT 59.606 33.333 0.00 0.00 34.08 2.83
3527 3733 8.807948 AAAGCTTCATTCTATTAGGCTGTTTA 57.192 30.769 0.00 0.00 0.00 2.01
3701 3955 4.177165 TGTTCTTTTGCATAGCATGTGG 57.823 40.909 0.00 0.00 38.76 4.17
3710 3965 2.417243 GCATAGCATGTGGTTTTGGTCC 60.417 50.000 0.00 0.00 0.00 4.46
3730 3985 5.254115 GTCCTTTTGCACCCTCTAGTTAAT 58.746 41.667 0.00 0.00 0.00 1.40
3739 4002 6.821665 TGCACCCTCTAGTTAATGTAACATTC 59.178 38.462 0.00 0.00 41.07 2.67
3781 4044 6.753913 ATCAGTTAGATGGAGGCTTAATGA 57.246 37.500 0.00 0.00 35.06 2.57
3782 4045 6.560003 TCAGTTAGATGGAGGCTTAATGAA 57.440 37.500 0.00 0.00 0.00 2.57
3783 4046 6.349300 TCAGTTAGATGGAGGCTTAATGAAC 58.651 40.000 0.00 0.00 0.00 3.18
3784 4047 6.070251 TCAGTTAGATGGAGGCTTAATGAACA 60.070 38.462 0.00 0.00 0.00 3.18
3785 4048 6.259608 CAGTTAGATGGAGGCTTAATGAACAG 59.740 42.308 0.00 0.00 0.00 3.16
3786 4049 6.156949 AGTTAGATGGAGGCTTAATGAACAGA 59.843 38.462 0.00 0.00 0.00 3.41
3788 4051 6.011122 AGATGGAGGCTTAATGAACAGAAT 57.989 37.500 0.00 0.00 0.00 2.40
3789 4052 5.826737 AGATGGAGGCTTAATGAACAGAATG 59.173 40.000 0.00 0.00 46.00 2.67
3790 4053 3.696051 TGGAGGCTTAATGAACAGAATGC 59.304 43.478 0.00 0.00 42.53 3.56
3791 4054 3.950395 GGAGGCTTAATGAACAGAATGCT 59.050 43.478 0.00 0.00 42.53 3.79
3797 4060 5.586243 GCTTAATGAACAGAATGCTACCAGA 59.414 40.000 0.00 0.00 42.53 3.86
3798 4061 6.457528 GCTTAATGAACAGAATGCTACCAGAC 60.458 42.308 0.00 0.00 42.53 3.51
3801 4064 4.256110 TGAACAGAATGCTACCAGACATG 58.744 43.478 0.00 0.00 42.53 3.21
3811 4074 5.056480 TGCTACCAGACATGTAACATATGC 58.944 41.667 0.00 0.00 0.00 3.14
3812 4075 5.163311 TGCTACCAGACATGTAACATATGCT 60.163 40.000 0.00 0.00 0.00 3.79
3813 4076 5.406780 GCTACCAGACATGTAACATATGCTC 59.593 44.000 0.00 0.00 0.00 4.26
3814 4077 5.357742 ACCAGACATGTAACATATGCTCA 57.642 39.130 0.00 0.10 0.00 4.26
3815 4078 5.118990 ACCAGACATGTAACATATGCTCAC 58.881 41.667 0.00 0.00 0.00 3.51
3817 4080 5.118286 CAGACATGTAACATATGCTCACCA 58.882 41.667 0.00 0.00 0.00 4.17
3818 4081 5.235831 CAGACATGTAACATATGCTCACCAG 59.764 44.000 0.00 0.00 0.00 4.00
3819 4082 5.102953 ACATGTAACATATGCTCACCAGT 57.897 39.130 1.58 0.00 0.00 4.00
3887 4397 7.065563 TGCAGTTTGCTGTGTTTTGAATATTTT 59.934 29.630 2.48 0.00 45.31 1.82
3977 4487 0.531200 GAGGTCTCGTTCCCGTTCAT 59.469 55.000 0.00 0.00 35.01 2.57
3979 4489 0.037605 GGTCTCGTTCCCGTTCATGT 60.038 55.000 0.00 0.00 35.01 3.21
4101 4623 8.543774 TCTAAAGCTATTCCCCTATCATTCATC 58.456 37.037 0.00 0.00 0.00 2.92
4193 4745 1.067821 GATGACTACTCTGCTTCCCCG 59.932 57.143 0.00 0.00 0.00 5.73
4322 4880 7.624360 TGCCAATACTAATGGAAAGTAAGTG 57.376 36.000 0.00 0.00 40.56 3.16
4334 4892 7.575414 TGGAAAGTAAGTGCTATTTTTGTCA 57.425 32.000 0.00 0.00 0.00 3.58
4357 4916 7.770897 GTCATGAAAGTAATGGATGTTCTAGGT 59.229 37.037 0.00 0.00 0.00 3.08
4364 4924 7.501844 AGTAATGGATGTTCTAGGTTTCTAGC 58.498 38.462 0.00 0.00 42.01 3.42
4443 5013 4.095782 GCACCAAGTTCTAGTGTTGTGAAA 59.904 41.667 0.00 0.00 33.96 2.69
4448 5018 7.012421 ACCAAGTTCTAGTGTTGTGAAAGAATC 59.988 37.037 0.00 0.00 0.00 2.52
4475 5046 9.998752 AGTATTCTATATGCCACTTATCTACCT 57.001 33.333 0.00 0.00 0.00 3.08
4481 5052 2.247635 TGCCACTTATCTACCTCTCCCT 59.752 50.000 0.00 0.00 0.00 4.20
4499 5070 9.190317 CCTCTCCCTTATTTGCTTTATAAACTT 57.810 33.333 0.00 0.00 0.00 2.66
4538 5109 4.336993 AGCACGTGGAATTCTTGTTTTGTA 59.663 37.500 18.88 0.00 0.00 2.41
4541 5112 6.200097 GCACGTGGAATTCTTGTTTTGTATTT 59.800 34.615 18.88 0.00 0.00 1.40
4590 5193 7.093509 GCTGGATCCACCTTTATTTTCCTTTAA 60.094 37.037 11.44 0.00 39.86 1.52
4633 5286 9.941325 TTTCATATGCCAAATTGTTTCTAATGT 57.059 25.926 0.00 0.00 0.00 2.71
4636 5289 9.800433 CATATGCCAAATTGTTTCTAATGTACA 57.200 29.630 0.00 0.00 0.00 2.90
4637 5290 9.801873 ATATGCCAAATTGTTTCTAATGTACAC 57.198 29.630 0.00 0.00 0.00 2.90
4638 5291 7.283625 TGCCAAATTGTTTCTAATGTACACT 57.716 32.000 0.00 0.00 0.00 3.55
4639 5292 7.144661 TGCCAAATTGTTTCTAATGTACACTG 58.855 34.615 0.00 0.00 0.00 3.66
4640 5293 6.089417 GCCAAATTGTTTCTAATGTACACTGC 59.911 38.462 0.00 0.00 0.00 4.40
4641 5294 7.144661 CCAAATTGTTTCTAATGTACACTGCA 58.855 34.615 0.00 0.00 0.00 4.41
4642 5295 7.326789 CCAAATTGTTTCTAATGTACACTGCAG 59.673 37.037 13.48 13.48 0.00 4.41
4643 5296 7.744087 AATTGTTTCTAATGTACACTGCAGA 57.256 32.000 23.35 0.00 0.00 4.26
4644 5297 7.928307 ATTGTTTCTAATGTACACTGCAGAT 57.072 32.000 23.35 10.72 0.00 2.90
4645 5298 9.448438 AATTGTTTCTAATGTACACTGCAGATA 57.552 29.630 23.35 9.60 0.00 1.98
4646 5299 9.618890 ATTGTTTCTAATGTACACTGCAGATAT 57.381 29.630 23.35 7.56 0.00 1.63
4647 5300 8.648557 TGTTTCTAATGTACACTGCAGATATC 57.351 34.615 23.35 8.62 0.00 1.63
4648 5301 8.478066 TGTTTCTAATGTACACTGCAGATATCT 58.522 33.333 23.35 0.00 0.00 1.98
4649 5302 9.319143 GTTTCTAATGTACACTGCAGATATCTT 57.681 33.333 23.35 11.50 0.00 2.40
4650 5303 9.534565 TTTCTAATGTACACTGCAGATATCTTC 57.465 33.333 23.35 0.00 0.00 2.87
4651 5304 7.661968 TCTAATGTACACTGCAGATATCTTCC 58.338 38.462 23.35 0.00 0.00 3.46
4652 5305 4.672587 TGTACACTGCAGATATCTTCCC 57.327 45.455 23.35 0.34 0.00 3.97
4653 5306 4.290093 TGTACACTGCAGATATCTTCCCT 58.710 43.478 23.35 0.00 0.00 4.20
4654 5307 4.716784 TGTACACTGCAGATATCTTCCCTT 59.283 41.667 23.35 0.00 0.00 3.95
4655 5308 4.148128 ACACTGCAGATATCTTCCCTTG 57.852 45.455 23.35 5.83 0.00 3.61
4706 5359 1.737236 GATTGTCTGTAATGCACGCCA 59.263 47.619 0.00 0.00 0.00 5.69
4749 5402 2.898705 AGTCAAGCCGCATCTCTTTAG 58.101 47.619 0.00 0.00 0.00 1.85
4754 5407 4.154195 TCAAGCCGCATCTCTTTAGTTTTC 59.846 41.667 0.00 0.00 0.00 2.29
4755 5408 3.944087 AGCCGCATCTCTTTAGTTTTCT 58.056 40.909 0.00 0.00 0.00 2.52
4768 5421 1.416401 AGTTTTCTCTCGAACCCAGCA 59.584 47.619 0.00 0.00 0.00 4.41
4771 5424 1.266178 TTCTCTCGAACCCAGCATCA 58.734 50.000 0.00 0.00 0.00 3.07
4772 5425 1.489481 TCTCTCGAACCCAGCATCAT 58.511 50.000 0.00 0.00 0.00 2.45
4773 5426 2.666317 TCTCTCGAACCCAGCATCATA 58.334 47.619 0.00 0.00 0.00 2.15
4774 5427 3.031013 TCTCTCGAACCCAGCATCATAA 58.969 45.455 0.00 0.00 0.00 1.90
4775 5428 3.068732 TCTCTCGAACCCAGCATCATAAG 59.931 47.826 0.00 0.00 0.00 1.73
4776 5429 3.031013 TCTCGAACCCAGCATCATAAGA 58.969 45.455 0.00 0.00 0.00 2.10
4777 5430 3.450817 TCTCGAACCCAGCATCATAAGAA 59.549 43.478 0.00 0.00 0.00 2.52
4787 5440 5.468072 CCAGCATCATAAGAACTGTACATCC 59.532 44.000 0.00 0.00 32.83 3.51
4792 5445 7.875041 GCATCATAAGAACTGTACATCCACTAT 59.125 37.037 0.00 0.00 0.00 2.12
4829 5483 2.802816 CCGCTACTTCTGGAATATGCAC 59.197 50.000 0.00 0.00 0.00 4.57
4830 5484 2.472861 CGCTACTTCTGGAATATGCACG 59.527 50.000 0.00 0.00 0.00 5.34
4832 5486 4.617959 GCTACTTCTGGAATATGCACGTA 58.382 43.478 0.00 0.00 0.00 3.57
4833 5487 4.444720 GCTACTTCTGGAATATGCACGTAC 59.555 45.833 0.00 0.00 0.00 3.67
4834 5488 3.793559 ACTTCTGGAATATGCACGTACC 58.206 45.455 0.00 0.00 0.00 3.34
4835 5489 3.451178 ACTTCTGGAATATGCACGTACCT 59.549 43.478 0.00 0.00 0.00 3.08
4836 5490 3.728076 TCTGGAATATGCACGTACCTC 57.272 47.619 0.00 0.00 0.00 3.85
4933 5595 3.614092 GTCACCACCATCTGACATTGAT 58.386 45.455 0.00 0.00 37.36 2.57
4954 5616 2.978452 GATCACCTCCACGCATCCGG 62.978 65.000 0.00 0.00 39.22 5.14
5234 5909 6.775629 ACCATGGTAGTGTTTTAATGTGAACT 59.224 34.615 18.10 0.00 0.00 3.01
5316 5991 5.734503 GCCTTTAACTTGCTCCATGAATAGC 60.735 44.000 0.00 0.62 39.25 2.97
5319 5994 7.283127 CCTTTAACTTGCTCCATGAATAGCTTA 59.717 37.037 13.50 4.46 39.53 3.09
5322 5997 5.312079 ACTTGCTCCATGAATAGCTTATCC 58.688 41.667 13.50 0.00 39.53 2.59
5324 6007 4.645535 TGCTCCATGAATAGCTTATCCAC 58.354 43.478 13.50 0.00 39.53 4.02
5396 6079 7.397476 ACAATGCTATCGGATCTTAGAAGGATA 59.603 37.037 0.00 0.00 0.00 2.59
5398 6081 7.575414 TGCTATCGGATCTTAGAAGGATATC 57.425 40.000 0.00 0.00 0.00 1.63
5551 6234 5.010922 ACATGAAGGCATAAAACACATGTGT 59.989 36.000 25.76 25.76 42.90 3.72
5575 6258 9.953697 TGTGTAAATTTTTAGAGCAAAATACGT 57.046 25.926 0.00 0.00 35.67 3.57
5590 6275 6.607689 CAAAATACGTTGACTGCCAAATCTA 58.392 36.000 0.00 0.00 36.36 1.98
5609 6294 7.716799 AATCTAGGGCATTTTAACACATGAA 57.283 32.000 0.00 0.00 0.00 2.57
5610 6295 6.757897 TCTAGGGCATTTTAACACATGAAG 57.242 37.500 0.00 0.00 0.00 3.02
5611 6296 4.192429 AGGGCATTTTAACACATGAAGC 57.808 40.909 0.00 0.00 0.00 3.86
5612 6297 3.055891 AGGGCATTTTAACACATGAAGCC 60.056 43.478 0.00 0.00 38.84 4.35
5613 6298 3.306641 GGGCATTTTAACACATGAAGCCA 60.307 43.478 0.00 0.00 41.23 4.75
5614 6299 4.506758 GGCATTTTAACACATGAAGCCAT 58.493 39.130 0.00 0.00 39.35 4.40
5655 6345 9.464714 AAACGCATTTAATTTTACACATACACA 57.535 25.926 0.00 0.00 0.00 3.72
5656 6346 9.632807 AACGCATTTAATTTTACACATACACAT 57.367 25.926 0.00 0.00 0.00 3.21
5667 6357 8.856153 TTTACACATACACATAACATCCTTGT 57.144 30.769 0.00 0.00 37.82 3.16
5669 6359 7.759489 ACACATACACATAACATCCTTGTTT 57.241 32.000 0.00 0.00 43.57 2.83
5670 6360 8.856153 ACACATACACATAACATCCTTGTTTA 57.144 30.769 0.00 0.00 43.57 2.01
5671 6361 8.726988 ACACATACACATAACATCCTTGTTTAC 58.273 33.333 0.00 0.00 43.57 2.01
5672 6362 8.946085 CACATACACATAACATCCTTGTTTACT 58.054 33.333 0.00 0.00 43.57 2.24
5673 6363 9.515226 ACATACACATAACATCCTTGTTTACTT 57.485 29.630 0.00 0.00 43.57 2.24
5674 6364 9.773328 CATACACATAACATCCTTGTTTACTTG 57.227 33.333 0.00 0.00 43.57 3.16
5675 6365 6.677913 ACACATAACATCCTTGTTTACTTGC 58.322 36.000 0.00 0.00 43.57 4.01
5676 6366 6.264292 ACACATAACATCCTTGTTTACTTGCA 59.736 34.615 0.00 0.00 43.57 4.08
5677 6367 6.582295 CACATAACATCCTTGTTTACTTGCAC 59.418 38.462 0.00 0.00 43.57 4.57
5678 6368 6.264292 ACATAACATCCTTGTTTACTTGCACA 59.736 34.615 0.00 0.00 43.57 4.57
5679 6369 5.590530 AACATCCTTGTTTACTTGCACAA 57.409 34.783 0.00 0.00 43.57 3.33
5680 6370 5.590530 ACATCCTTGTTTACTTGCACAAA 57.409 34.783 0.00 0.00 32.53 2.83
5709 6399 7.841915 TTTTGAAATTGGAAAGTTGGAGTTC 57.158 32.000 0.00 0.00 32.38 3.01
5713 6403 6.550854 TGAAATTGGAAAGTTGGAGTTCTGAT 59.449 34.615 0.00 0.00 32.38 2.90
5742 6433 7.765695 TTTAATTTTGAGATCCAGTGAGCTT 57.234 32.000 0.00 0.00 37.36 3.74
5762 6453 0.305617 GGTCACCAAACGTCCGTTTC 59.694 55.000 14.32 4.02 45.32 2.78
5763 6454 1.292992 GTCACCAAACGTCCGTTTCT 58.707 50.000 14.32 1.16 45.32 2.52
5764 6455 1.667212 GTCACCAAACGTCCGTTTCTT 59.333 47.619 14.32 2.60 45.32 2.52
5765 6456 1.666700 TCACCAAACGTCCGTTTCTTG 59.333 47.619 14.32 13.51 45.32 3.02
5823 6514 4.594491 AGAGATGCAACCCAATTCCTTTTT 59.406 37.500 0.00 0.00 0.00 1.94
5860 6551 9.851686 TCTATGCTTATTGTCCAATTTGTCTAT 57.148 29.630 0.00 0.00 32.50 1.98
5875 6566 4.418013 TGTCTATGAACAAAATGGCACG 57.582 40.909 0.00 0.00 0.00 5.34
5901 6592 5.625150 AGGGTGTAGGATCAAAGATATTGC 58.375 41.667 0.00 0.00 0.00 3.56
5914 6605 6.095440 TCAAAGATATTGCTAAGGCCTTGTTC 59.905 38.462 28.77 16.17 37.74 3.18
5964 6655 1.155390 CCCGGTCTGCCCTATAGGA 59.845 63.158 21.07 0.00 38.24 2.94
5965 6656 0.471211 CCCGGTCTGCCCTATAGGAA 60.471 60.000 21.07 7.13 38.24 3.36
5980 6671 2.711978 AGGAATCTTCGGTTAAGGCC 57.288 50.000 0.00 0.00 35.75 5.19
6010 6701 0.111639 GTTACCCTCCCAAGCCACAA 59.888 55.000 0.00 0.00 0.00 3.33
6016 6707 0.961753 CTCCCAAGCCACAAGGAAAC 59.038 55.000 0.00 0.00 36.89 2.78
6036 6727 4.722535 TCGGGAGCCAGCCCTCTT 62.723 66.667 5.47 0.00 46.44 2.85
6046 6737 1.159664 AGCCCTCTTGTCTCACCCT 59.840 57.895 0.00 0.00 0.00 4.34
6062 6753 0.178992 CCCTGTGGAAGCAAACCTCA 60.179 55.000 0.00 0.00 0.00 3.86
6063 6754 0.954452 CCTGTGGAAGCAAACCTCAC 59.046 55.000 0.00 0.00 0.00 3.51
6064 6755 1.477558 CCTGTGGAAGCAAACCTCACT 60.478 52.381 0.00 0.00 0.00 3.41
6065 6756 1.876156 CTGTGGAAGCAAACCTCACTC 59.124 52.381 0.00 0.00 0.00 3.51
6066 6757 1.490490 TGTGGAAGCAAACCTCACTCT 59.510 47.619 0.00 0.00 0.00 3.24
6067 6758 1.876156 GTGGAAGCAAACCTCACTCTG 59.124 52.381 0.00 0.00 0.00 3.35
6068 6759 1.202806 TGGAAGCAAACCTCACTCTGG 60.203 52.381 0.00 0.00 0.00 3.86
6069 6760 0.877743 GAAGCAAACCTCACTCTGGC 59.122 55.000 0.00 0.00 0.00 4.85
6070 6761 0.886490 AAGCAAACCTCACTCTGGCG 60.886 55.000 0.00 0.00 0.00 5.69
6071 6762 2.328099 GCAAACCTCACTCTGGCGG 61.328 63.158 0.00 0.00 0.00 6.13
6072 6763 2.032681 AAACCTCACTCTGGCGGC 59.967 61.111 0.00 0.00 0.00 6.53
6073 6764 3.883744 AAACCTCACTCTGGCGGCG 62.884 63.158 0.51 0.51 0.00 6.46
6076 6767 3.826754 CTCACTCTGGCGGCGCTA 61.827 66.667 32.30 25.92 0.00 4.26
6077 6768 3.764810 CTCACTCTGGCGGCGCTAG 62.765 68.421 35.29 35.29 38.51 3.42
6078 6769 3.826754 CACTCTGGCGGCGCTAGA 61.827 66.667 38.79 38.79 43.54 2.43
6081 6772 3.518998 TCTGGCGGCGCTAGAGAC 61.519 66.667 38.46 19.28 41.04 3.36
6082 6773 4.914420 CTGGCGGCGCTAGAGACG 62.914 72.222 37.35 18.27 39.54 4.18
6084 6775 4.189188 GGCGGCGCTAGAGACGAA 62.189 66.667 32.30 0.00 0.00 3.85
6085 6776 2.652496 GCGGCGCTAGAGACGAAG 60.652 66.667 26.82 0.00 0.00 3.79
6086 6777 2.024871 CGGCGCTAGAGACGAAGG 59.975 66.667 17.70 0.00 0.00 3.46
6087 6778 2.413765 GGCGCTAGAGACGAAGGG 59.586 66.667 7.64 0.00 0.00 3.95
6088 6779 2.278923 GCGCTAGAGACGAAGGGC 60.279 66.667 0.00 0.00 43.20 5.19
6089 6780 3.197614 CGCTAGAGACGAAGGGCA 58.802 61.111 0.00 0.00 0.00 5.36
6090 6781 1.064946 CGCTAGAGACGAAGGGCAG 59.935 63.158 0.00 0.00 0.00 4.85
6091 6782 1.377366 CGCTAGAGACGAAGGGCAGA 61.377 60.000 0.00 0.00 0.00 4.26
6092 6783 0.383949 GCTAGAGACGAAGGGCAGAG 59.616 60.000 0.00 0.00 0.00 3.35
6093 6784 2.019668 GCTAGAGACGAAGGGCAGAGA 61.020 57.143 0.00 0.00 0.00 3.10
6094 6785 1.946768 CTAGAGACGAAGGGCAGAGAG 59.053 57.143 0.00 0.00 0.00 3.20
6095 6786 1.140804 GAGACGAAGGGCAGAGAGC 59.859 63.158 0.00 0.00 44.65 4.09
6382 7073 2.358039 AAGATCGTGTCCAACCGGA 58.642 52.632 9.46 0.00 39.79 5.14
6383 7074 0.246635 AAGATCGTGTCCAACCGGAG 59.753 55.000 9.46 0.00 43.99 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.931713 CTAACGTAGCTCCGCCGGTG 62.932 65.000 8.42 8.42 0.00 4.94
14 15 2.751436 TAACGTAGCTCCGCCGGT 60.751 61.111 1.63 0.00 0.00 5.28
15 16 2.025727 CTAACGTAGCTCCGCCGG 59.974 66.667 0.00 0.00 0.00 6.13
16 17 2.025727 CCTAACGTAGCTCCGCCG 59.974 66.667 0.00 0.00 0.00 6.46
19 20 1.952102 TTGGCCCTAACGTAGCTCCG 61.952 60.000 0.00 0.00 0.00 4.63
20 21 0.251073 TTTGGCCCTAACGTAGCTCC 59.749 55.000 0.00 0.00 0.00 4.70
23 24 1.467342 CTTGTTTGGCCCTAACGTAGC 59.533 52.381 0.00 0.00 0.00 3.58
24 25 2.081462 CCTTGTTTGGCCCTAACGTAG 58.919 52.381 0.00 6.55 0.00 3.51
25 26 1.883209 GCCTTGTTTGGCCCTAACGTA 60.883 52.381 0.00 0.00 46.82 3.57
26 27 1.176619 GCCTTGTTTGGCCCTAACGT 61.177 55.000 0.00 0.00 46.82 3.99
27 28 1.584495 GCCTTGTTTGGCCCTAACG 59.416 57.895 0.00 0.00 46.82 3.18
51 52 1.753368 TTTTGGAAAAGCTGGGCGGG 61.753 55.000 0.00 0.00 0.00 6.13
52 53 0.105778 TTTTTGGAAAAGCTGGGCGG 59.894 50.000 0.00 0.00 0.00 6.13
53 54 3.677002 TTTTTGGAAAAGCTGGGCG 57.323 47.368 0.00 0.00 0.00 6.13
87 88 1.067283 TCTGTGAGCTGAGCAGTAAGC 60.067 52.381 7.39 0.00 46.19 3.09
88 89 2.029560 TGTCTGTGAGCTGAGCAGTAAG 60.030 50.000 7.39 0.00 0.00 2.34
89 90 1.963515 TGTCTGTGAGCTGAGCAGTAA 59.036 47.619 7.39 0.00 0.00 2.24
90 91 1.270826 GTGTCTGTGAGCTGAGCAGTA 59.729 52.381 7.39 0.00 0.00 2.74
91 92 0.033228 GTGTCTGTGAGCTGAGCAGT 59.967 55.000 7.39 0.00 0.00 4.40
92 93 0.033090 TGTGTCTGTGAGCTGAGCAG 59.967 55.000 7.39 0.00 0.00 4.24
93 94 0.249615 GTGTGTCTGTGAGCTGAGCA 60.250 55.000 7.39 0.00 0.00 4.26
94 95 0.249615 TGTGTGTCTGTGAGCTGAGC 60.250 55.000 0.00 0.00 0.00 4.26
95 96 2.133553 CTTGTGTGTCTGTGAGCTGAG 58.866 52.381 0.00 0.00 0.00 3.35
96 97 1.756538 TCTTGTGTGTCTGTGAGCTGA 59.243 47.619 0.00 0.00 0.00 4.26
97 98 1.863454 GTCTTGTGTGTCTGTGAGCTG 59.137 52.381 0.00 0.00 0.00 4.24
98 99 1.759445 AGTCTTGTGTGTCTGTGAGCT 59.241 47.619 0.00 0.00 0.00 4.09
99 100 2.231215 AGTCTTGTGTGTCTGTGAGC 57.769 50.000 0.00 0.00 0.00 4.26
100 101 4.036852 TGACTAGTCTTGTGTGTCTGTGAG 59.963 45.833 23.01 0.00 0.00 3.51
101 102 3.951680 TGACTAGTCTTGTGTGTCTGTGA 59.048 43.478 23.01 0.00 0.00 3.58
102 103 4.294232 CTGACTAGTCTTGTGTGTCTGTG 58.706 47.826 23.01 0.00 0.00 3.66
103 104 3.243569 GCTGACTAGTCTTGTGTGTCTGT 60.244 47.826 23.01 0.00 0.00 3.41
104 105 3.243535 TGCTGACTAGTCTTGTGTGTCTG 60.244 47.826 23.01 0.56 0.00 3.51
105 106 2.959030 TGCTGACTAGTCTTGTGTGTCT 59.041 45.455 23.01 0.00 0.00 3.41
106 107 3.371102 TGCTGACTAGTCTTGTGTGTC 57.629 47.619 23.01 4.75 0.00 3.67
107 108 3.657634 CATGCTGACTAGTCTTGTGTGT 58.342 45.455 23.01 1.33 0.00 3.72
108 109 2.414481 GCATGCTGACTAGTCTTGTGTG 59.586 50.000 23.01 15.28 0.00 3.82
109 110 2.037641 TGCATGCTGACTAGTCTTGTGT 59.962 45.455 23.01 3.83 0.00 3.72
110 111 2.671888 CTGCATGCTGACTAGTCTTGTG 59.328 50.000 23.01 16.18 0.00 3.33
111 112 2.934364 GCTGCATGCTGACTAGTCTTGT 60.934 50.000 26.71 4.83 38.95 3.16
112 113 1.664659 GCTGCATGCTGACTAGTCTTG 59.335 52.381 26.71 16.18 38.95 3.02
113 114 1.277273 TGCTGCATGCTGACTAGTCTT 59.723 47.619 26.71 3.71 43.37 3.01
114 115 0.900421 TGCTGCATGCTGACTAGTCT 59.100 50.000 26.71 0.19 43.37 3.24
115 116 1.730501 TTGCTGCATGCTGACTAGTC 58.269 50.000 26.71 16.32 43.37 2.59
116 117 2.414994 ATTGCTGCATGCTGACTAGT 57.585 45.000 26.71 0.00 43.37 2.57
117 118 2.681344 TGAATTGCTGCATGCTGACTAG 59.319 45.455 26.71 12.82 43.37 2.57
118 119 2.713877 TGAATTGCTGCATGCTGACTA 58.286 42.857 26.71 14.96 43.37 2.59
119 120 1.541379 TGAATTGCTGCATGCTGACT 58.459 45.000 26.71 8.24 43.37 3.41
120 121 2.259618 CTTGAATTGCTGCATGCTGAC 58.740 47.619 26.71 17.69 43.37 3.51
121 122 1.890489 ACTTGAATTGCTGCATGCTGA 59.110 42.857 26.71 8.51 43.37 4.26
122 123 2.363788 ACTTGAATTGCTGCATGCTG 57.636 45.000 20.33 19.80 43.37 4.41
123 124 3.396260 AAACTTGAATTGCTGCATGCT 57.604 38.095 20.33 0.00 43.37 3.79
124 125 3.061697 GCTAAACTTGAATTGCTGCATGC 59.938 43.478 11.82 11.82 43.25 4.06
125 126 4.090930 GTGCTAAACTTGAATTGCTGCATG 59.909 41.667 1.84 0.00 0.00 4.06
126 127 4.240096 GTGCTAAACTTGAATTGCTGCAT 58.760 39.130 1.84 0.00 0.00 3.96
127 128 3.552684 GGTGCTAAACTTGAATTGCTGCA 60.553 43.478 0.00 0.00 0.00 4.41
128 129 2.989166 GGTGCTAAACTTGAATTGCTGC 59.011 45.455 0.00 0.00 0.00 5.25
129 130 4.241590 TGGTGCTAAACTTGAATTGCTG 57.758 40.909 0.00 0.00 0.00 4.41
130 131 4.281688 ACATGGTGCTAAACTTGAATTGCT 59.718 37.500 0.00 0.00 0.00 3.91
131 132 4.559153 ACATGGTGCTAAACTTGAATTGC 58.441 39.130 0.00 0.00 0.00 3.56
132 133 7.148755 GCTAAACATGGTGCTAAACTTGAATTG 60.149 37.037 0.00 0.00 0.00 2.32
133 134 6.868339 GCTAAACATGGTGCTAAACTTGAATT 59.132 34.615 0.00 0.00 0.00 2.17
134 135 6.015519 TGCTAAACATGGTGCTAAACTTGAAT 60.016 34.615 0.00 0.00 0.00 2.57
135 136 5.300539 TGCTAAACATGGTGCTAAACTTGAA 59.699 36.000 0.00 0.00 0.00 2.69
136 137 4.824537 TGCTAAACATGGTGCTAAACTTGA 59.175 37.500 0.00 0.00 0.00 3.02
137 138 5.119931 TGCTAAACATGGTGCTAAACTTG 57.880 39.130 0.00 0.00 0.00 3.16
138 139 5.508994 GGTTGCTAAACATGGTGCTAAACTT 60.509 40.000 0.00 0.00 38.10 2.66
139 140 4.022329 GGTTGCTAAACATGGTGCTAAACT 60.022 41.667 0.00 0.00 38.10 2.66
140 141 4.022329 AGGTTGCTAAACATGGTGCTAAAC 60.022 41.667 0.00 0.00 38.10 2.01
141 142 4.022416 CAGGTTGCTAAACATGGTGCTAAA 60.022 41.667 0.00 0.00 42.87 1.85
142 143 3.505680 CAGGTTGCTAAACATGGTGCTAA 59.494 43.478 0.00 0.00 42.87 3.09
143 144 3.081061 CAGGTTGCTAAACATGGTGCTA 58.919 45.455 0.00 0.00 42.87 3.49
144 145 1.888512 CAGGTTGCTAAACATGGTGCT 59.111 47.619 0.00 0.00 42.87 4.40
145 146 2.352503 CAGGTTGCTAAACATGGTGC 57.647 50.000 0.00 0.00 42.87 5.01
149 150 0.532115 GGGCCAGGTTGCTAAACATG 59.468 55.000 4.39 0.00 45.45 3.21
150 151 0.965363 CGGGCCAGGTTGCTAAACAT 60.965 55.000 4.39 0.00 38.10 2.71
151 152 1.602323 CGGGCCAGGTTGCTAAACA 60.602 57.895 4.39 0.00 38.10 2.83
152 153 2.989881 GCGGGCCAGGTTGCTAAAC 61.990 63.158 4.39 0.00 35.40 2.01
153 154 2.675075 GCGGGCCAGGTTGCTAAA 60.675 61.111 4.39 0.00 0.00 1.85
154 155 4.733542 GGCGGGCCAGGTTGCTAA 62.734 66.667 4.39 0.00 35.81 3.09
163 164 4.932105 AAAAAGCTGGGCGGGCCA 62.932 61.111 22.99 22.99 37.98 5.36
164 165 4.377708 CAAAAAGCTGGGCGGGCC 62.378 66.667 14.65 14.65 0.00 5.80
174 175 0.169009 CGGAGCTACCAGCAAAAAGC 59.831 55.000 0.38 0.00 45.56 3.51
200 201 2.813908 GACGACGATGGTGGCCAC 60.814 66.667 28.57 28.57 35.80 5.01
201 202 4.429212 CGACGACGATGGTGGCCA 62.429 66.667 0.00 0.00 42.66 5.36
204 205 2.292794 AATCCCGACGACGATGGTGG 62.293 60.000 9.28 0.75 42.66 4.61
205 206 1.141019 AATCCCGACGACGATGGTG 59.859 57.895 9.28 0.00 42.66 4.17
206 207 1.141019 CAATCCCGACGACGATGGT 59.859 57.895 9.28 0.00 42.66 3.55
207 208 0.595053 CTCAATCCCGACGACGATGG 60.595 60.000 9.28 2.33 42.66 3.51
208 209 1.209275 GCTCAATCCCGACGACGATG 61.209 60.000 9.28 2.74 42.66 3.84
209 210 1.065928 GCTCAATCCCGACGACGAT 59.934 57.895 9.28 0.00 42.66 3.73
210 211 1.592400 AAGCTCAATCCCGACGACGA 61.592 55.000 9.28 0.00 42.66 4.20
211 212 1.153823 AAGCTCAATCCCGACGACG 60.154 57.895 0.00 0.00 39.43 5.12
212 213 1.696832 GCAAGCTCAATCCCGACGAC 61.697 60.000 0.00 0.00 0.00 4.34
213 214 1.447838 GCAAGCTCAATCCCGACGA 60.448 57.895 0.00 0.00 0.00 4.20
214 215 1.298157 TTGCAAGCTCAATCCCGACG 61.298 55.000 0.00 0.00 0.00 5.12
215 216 0.169009 GTTGCAAGCTCAATCCCGAC 59.831 55.000 0.00 0.00 0.00 4.79
216 217 0.036732 AGTTGCAAGCTCAATCCCGA 59.963 50.000 0.00 0.00 0.00 5.14
217 218 0.169672 CAGTTGCAAGCTCAATCCCG 59.830 55.000 0.00 0.00 0.00 5.14
218 219 1.251251 ACAGTTGCAAGCTCAATCCC 58.749 50.000 0.00 0.00 0.00 3.85
219 220 2.421424 CCTACAGTTGCAAGCTCAATCC 59.579 50.000 0.00 0.00 0.00 3.01
220 221 3.338249 TCCTACAGTTGCAAGCTCAATC 58.662 45.455 0.00 0.00 0.00 2.67
221 222 3.341823 CTCCTACAGTTGCAAGCTCAAT 58.658 45.455 0.00 0.00 0.00 2.57
222 223 2.771089 CTCCTACAGTTGCAAGCTCAA 58.229 47.619 0.00 0.00 0.00 3.02
223 224 1.609061 GCTCCTACAGTTGCAAGCTCA 60.609 52.381 0.00 0.00 0.00 4.26
224 225 1.082690 GCTCCTACAGTTGCAAGCTC 58.917 55.000 0.00 0.00 0.00 4.09
225 226 0.322008 GGCTCCTACAGTTGCAAGCT 60.322 55.000 0.00 0.00 0.00 3.74
226 227 0.606401 TGGCTCCTACAGTTGCAAGC 60.606 55.000 0.00 0.00 0.00 4.01
227 228 2.012673 GATGGCTCCTACAGTTGCAAG 58.987 52.381 0.00 0.00 0.00 4.01
228 229 1.340017 GGATGGCTCCTACAGTTGCAA 60.340 52.381 0.00 0.00 38.65 4.08
229 230 0.253044 GGATGGCTCCTACAGTTGCA 59.747 55.000 0.00 0.00 38.65 4.08
230 231 3.086733 GGATGGCTCCTACAGTTGC 57.913 57.895 0.00 0.00 38.65 4.17
244 245 4.148128 AGTTGTGAGATAGCCAAGGATG 57.852 45.455 0.00 0.00 0.00 3.51
245 246 4.346418 CCTAGTTGTGAGATAGCCAAGGAT 59.654 45.833 0.00 0.00 0.00 3.24
246 247 3.706594 CCTAGTTGTGAGATAGCCAAGGA 59.293 47.826 0.00 0.00 0.00 3.36
247 248 3.742640 GCCTAGTTGTGAGATAGCCAAGG 60.743 52.174 0.00 0.00 0.00 3.61
248 249 3.133721 AGCCTAGTTGTGAGATAGCCAAG 59.866 47.826 0.00 0.00 0.00 3.61
249 250 3.107601 AGCCTAGTTGTGAGATAGCCAA 58.892 45.455 0.00 0.00 0.00 4.52
250 251 2.752030 AGCCTAGTTGTGAGATAGCCA 58.248 47.619 0.00 0.00 0.00 4.75
251 252 3.304794 CGTAGCCTAGTTGTGAGATAGCC 60.305 52.174 0.00 0.00 0.00 3.93
252 253 3.315749 ACGTAGCCTAGTTGTGAGATAGC 59.684 47.826 0.00 0.00 0.00 2.97
253 254 4.790123 GCACGTAGCCTAGTTGTGAGATAG 60.790 50.000 0.00 0.00 37.23 2.08
254 255 3.066342 GCACGTAGCCTAGTTGTGAGATA 59.934 47.826 0.00 0.00 37.23 1.98
255 256 2.159226 GCACGTAGCCTAGTTGTGAGAT 60.159 50.000 0.00 0.00 37.23 2.75
256 257 1.201647 GCACGTAGCCTAGTTGTGAGA 59.798 52.381 0.00 0.00 37.23 3.27
257 258 1.630148 GCACGTAGCCTAGTTGTGAG 58.370 55.000 0.00 0.00 37.23 3.51
258 259 3.806591 GCACGTAGCCTAGTTGTGA 57.193 52.632 0.00 0.00 37.23 3.58
268 269 0.737715 CTGAAGTCCCAGCACGTAGC 60.738 60.000 0.00 0.00 46.19 3.58
269 270 3.425578 CTGAAGTCCCAGCACGTAG 57.574 57.895 0.00 0.00 0.00 3.51
278 279 2.482142 CGACAATAGGAGCTGAAGTCCC 60.482 54.545 0.00 0.00 34.21 4.46
287 288 1.889573 GGCCAGCGACAATAGGAGC 60.890 63.158 0.00 0.00 0.00 4.70
309 310 0.738389 GGGGAACATATGTTGTGGCG 59.262 55.000 25.42 0.00 38.99 5.69
329 330 0.541764 TCTTCCCTTTGCCGCCAAAT 60.542 50.000 0.00 0.00 39.98 2.32
330 331 1.152652 TCTTCCCTTTGCCGCCAAA 60.153 52.632 0.00 0.00 38.56 3.28
333 334 2.751837 CCTCTTCCCTTTGCCGCC 60.752 66.667 0.00 0.00 0.00 6.13
374 380 7.147141 ACCCAACATTCATATTCTTCCCATCTA 60.147 37.037 0.00 0.00 0.00 1.98
378 384 5.205517 ACCCAACATTCATATTCTTCCCA 57.794 39.130 0.00 0.00 0.00 4.37
397 404 3.937079 CACCTAGAAAACCGATACAACCC 59.063 47.826 0.00 0.00 0.00 4.11
407 414 2.488153 GCACCACATCACCTAGAAAACC 59.512 50.000 0.00 0.00 0.00 3.27
426 433 2.438021 ACTGGTTCTGAACTAAGTGGCA 59.562 45.455 19.05 6.82 30.66 4.92
432 439 6.431543 TGTGTTTTTGACTGGTTCTGAACTAA 59.568 34.615 19.05 8.11 0.00 2.24
453 460 9.912634 CCATTTAAAAGACAAACATCTATGTGT 57.087 29.630 0.00 0.00 41.61 3.72
462 469 9.364989 CTCTCAAAACCATTTAAAAGACAAACA 57.635 29.630 0.00 0.00 0.00 2.83
464 471 9.936759 AACTCTCAAAACCATTTAAAAGACAAA 57.063 25.926 0.00 0.00 0.00 2.83
499 506 3.963129 TGACTTCAGTTTGGTCCAAGTT 58.037 40.909 4.09 0.00 0.00 2.66
504 511 2.230660 CCCTTGACTTCAGTTTGGTCC 58.769 52.381 0.00 0.00 0.00 4.46
505 512 2.932261 ACCCTTGACTTCAGTTTGGTC 58.068 47.619 0.00 0.00 0.00 4.02
519 526 5.708230 TGGCTAAGTACAATTACAACCCTTG 59.292 40.000 0.00 0.00 0.00 3.61
741 791 8.924511 TTCAGTGTTCAATCTTTCTTTCCTAT 57.075 30.769 0.00 0.00 0.00 2.57
744 794 7.222805 GGTTTTCAGTGTTCAATCTTTCTTTCC 59.777 37.037 0.00 0.00 0.00 3.13
745 795 7.222805 GGGTTTTCAGTGTTCAATCTTTCTTTC 59.777 37.037 0.00 0.00 0.00 2.62
753 803 4.664150 TTGGGGTTTTCAGTGTTCAATC 57.336 40.909 0.00 0.00 0.00 2.67
757 807 4.664150 TTCATTGGGGTTTTCAGTGTTC 57.336 40.909 0.00 0.00 0.00 3.18
761 811 5.188751 TCTGTTTTTCATTGGGGTTTTCAGT 59.811 36.000 0.00 0.00 0.00 3.41
865 917 4.541973 ATTCTAAAAGCAAGGCCCAAAG 57.458 40.909 0.00 0.00 0.00 2.77
888 940 1.281867 TCAGATGGGCCTTGTTTCGAT 59.718 47.619 4.53 0.00 0.00 3.59
902 957 6.176183 ACCCTATTTGAGTTTCAGTCAGATG 58.824 40.000 0.00 0.00 0.00 2.90
953 1009 4.710375 ACGCGATATATAGAAAGGATGGGT 59.290 41.667 15.93 0.00 0.00 4.51
998 1054 1.990060 CGAGGGGAAAGAGAGGGCA 60.990 63.158 0.00 0.00 0.00 5.36
1091 1151 1.457380 TACAGGTGGGGAGGGAGGAA 61.457 60.000 0.00 0.00 0.00 3.36
1104 1167 4.157120 GGGCACGCGGATACAGGT 62.157 66.667 12.47 0.00 0.00 4.00
1326 1397 1.230635 ACAGCGTGACATGAACAGCC 61.231 55.000 0.00 0.00 0.00 4.85
1338 1409 4.266157 CGTGATGATTAATGAACAGCGTG 58.734 43.478 0.00 0.00 0.00 5.34
1346 1417 6.539826 AGTTGATTCAGCGTGATGATTAATGA 59.460 34.615 0.00 0.00 0.00 2.57
1350 1421 5.178061 ACAGTTGATTCAGCGTGATGATTA 58.822 37.500 6.86 0.00 0.00 1.75
1351 1422 4.005650 ACAGTTGATTCAGCGTGATGATT 58.994 39.130 6.86 0.00 0.00 2.57
1352 1423 3.603532 ACAGTTGATTCAGCGTGATGAT 58.396 40.909 6.86 0.00 0.00 2.45
1380 1451 0.676466 TCAGCCAACCTATTGCCACG 60.676 55.000 0.00 0.00 34.17 4.94
1396 1467 2.743752 CCAGACAATGCGGCGTCAG 61.744 63.158 9.37 0.00 34.48 3.51
1429 1500 8.547894 GGTTTTCAATACCAAGAATCAAACAAC 58.452 33.333 0.00 0.00 35.67 3.32
1521 1592 0.752743 TAGGTGATTGCCATGGCTGC 60.753 55.000 35.53 24.01 42.51 5.25
1530 1601 7.807977 TCTTGAAGGATTATTAGGTGATTGC 57.192 36.000 0.00 0.00 0.00 3.56
1563 1634 1.092921 TCGCACCACGGGAATAATGC 61.093 55.000 0.00 0.00 43.89 3.56
1564 1635 0.655733 GTCGCACCACGGGAATAATG 59.344 55.000 0.00 0.00 43.89 1.90
1565 1636 0.463116 GGTCGCACCACGGGAATAAT 60.463 55.000 0.00 0.00 43.89 1.28
1566 1637 1.078988 GGTCGCACCACGGGAATAA 60.079 57.895 0.00 0.00 43.89 1.40
1567 1638 2.284276 TGGTCGCACCACGGGAATA 61.284 57.895 4.16 0.00 44.79 1.75
1568 1639 3.632080 TGGTCGCACCACGGGAAT 61.632 61.111 4.16 0.00 44.79 3.01
1576 1647 2.500509 TTTCATTGTTTGGTCGCACC 57.499 45.000 0.00 0.00 39.22 5.01
1577 1648 5.196825 CAAAATTTCATTGTTTGGTCGCAC 58.803 37.500 0.00 0.00 0.00 5.34
1578 1649 4.260538 GCAAAATTTCATTGTTTGGTCGCA 60.261 37.500 0.00 0.00 33.72 5.10
1579 1650 4.024977 AGCAAAATTTCATTGTTTGGTCGC 60.025 37.500 0.00 0.00 38.26 5.19
1580 1651 5.655893 AGCAAAATTTCATTGTTTGGTCG 57.344 34.783 0.00 0.00 38.26 4.79
1581 1652 7.249858 ACAAAGCAAAATTTCATTGTTTGGTC 58.750 30.769 14.15 0.00 40.89 4.02
1582 1653 7.121020 AGACAAAGCAAAATTTCATTGTTTGGT 59.879 29.630 10.32 5.43 42.90 3.67
1583 1654 7.474190 AGACAAAGCAAAATTTCATTGTTTGG 58.526 30.769 10.32 2.94 35.51 3.28
1584 1655 8.898983 AAGACAAAGCAAAATTTCATTGTTTG 57.101 26.923 10.32 10.72 36.28 2.93
1585 1656 8.728833 TGAAGACAAAGCAAAATTTCATTGTTT 58.271 25.926 10.32 0.33 33.42 2.83
1586 1657 8.266392 TGAAGACAAAGCAAAATTTCATTGTT 57.734 26.923 10.32 0.00 31.68 2.83
1587 1658 7.846644 TGAAGACAAAGCAAAATTTCATTGT 57.153 28.000 9.30 9.30 34.01 2.71
1588 1659 7.801315 CCATGAAGACAAAGCAAAATTTCATTG 59.199 33.333 0.00 0.00 33.04 2.82
1589 1660 7.520937 GCCATGAAGACAAAGCAAAATTTCATT 60.521 33.333 0.00 0.00 33.04 2.57
1590 1661 6.072893 GCCATGAAGACAAAGCAAAATTTCAT 60.073 34.615 0.00 0.00 34.99 2.57
1591 1662 5.236911 GCCATGAAGACAAAGCAAAATTTCA 59.763 36.000 0.00 0.00 0.00 2.69
1592 1663 5.236911 TGCCATGAAGACAAAGCAAAATTTC 59.763 36.000 0.00 0.00 35.97 2.17
1593 1664 5.124645 TGCCATGAAGACAAAGCAAAATTT 58.875 33.333 0.00 0.00 35.97 1.82
1594 1665 4.706035 TGCCATGAAGACAAAGCAAAATT 58.294 34.783 0.00 0.00 35.97 1.82
1595 1666 4.312443 CTGCCATGAAGACAAAGCAAAAT 58.688 39.130 0.00 0.00 37.55 1.82
1596 1667 3.719924 CTGCCATGAAGACAAAGCAAAA 58.280 40.909 0.00 0.00 37.55 2.44
1597 1668 2.546373 GCTGCCATGAAGACAAAGCAAA 60.546 45.455 0.00 0.00 37.55 3.68
1598 1669 1.000060 GCTGCCATGAAGACAAAGCAA 60.000 47.619 0.00 0.00 37.55 3.91
1599 1670 0.599558 GCTGCCATGAAGACAAAGCA 59.400 50.000 0.00 0.00 36.89 3.91
1600 1671 0.108945 GGCTGCCATGAAGACAAAGC 60.109 55.000 15.17 0.00 0.00 3.51
1601 1672 1.250328 TGGCTGCCATGAAGACAAAG 58.750 50.000 19.30 0.00 26.66 2.77
1602 1673 1.927487 ATGGCTGCCATGAAGACAAA 58.073 45.000 32.12 1.46 43.39 2.83
1603 1674 3.675995 ATGGCTGCCATGAAGACAA 57.324 47.368 32.12 2.30 43.39 3.18
1611 1682 1.382009 TGATTGCCATGGCTGCCAT 60.382 52.632 35.53 27.95 46.37 4.40
1612 1683 2.037527 TGATTGCCATGGCTGCCA 59.962 55.556 35.53 25.65 42.51 4.92
1613 1684 2.497770 GTGATTGCCATGGCTGCC 59.502 61.111 35.53 23.32 42.51 4.85
1614 1685 0.752743 TAGGTGATTGCCATGGCTGC 60.753 55.000 35.53 24.01 42.51 5.25
1615 1686 1.766494 TTAGGTGATTGCCATGGCTG 58.234 50.000 35.53 0.00 42.51 4.85
1616 1687 2.761786 ATTAGGTGATTGCCATGGCT 57.238 45.000 35.53 18.67 42.51 4.75
1617 1688 4.082026 GGATTATTAGGTGATTGCCATGGC 60.082 45.833 30.54 30.54 42.35 4.40
1618 1689 5.327732 AGGATTATTAGGTGATTGCCATGG 58.672 41.667 7.63 7.63 0.00 3.66
1619 1690 6.491062 TGAAGGATTATTAGGTGATTGCCATG 59.509 38.462 0.00 0.00 0.00 3.66
1620 1691 6.613699 TGAAGGATTATTAGGTGATTGCCAT 58.386 36.000 0.00 0.00 0.00 4.40
1621 1692 6.012337 TGAAGGATTATTAGGTGATTGCCA 57.988 37.500 0.00 0.00 0.00 4.92
1622 1693 6.772716 TCTTGAAGGATTATTAGGTGATTGCC 59.227 38.462 0.00 0.00 0.00 4.52
1623 1694 7.807977 TCTTGAAGGATTATTAGGTGATTGC 57.192 36.000 0.00 0.00 0.00 3.56
1630 1701 9.722056 CGTGAATTTTCTTGAAGGATTATTAGG 57.278 33.333 0.00 0.00 0.00 2.69
1644 1715 9.787532 CCACATGAATAATACGTGAATTTTCTT 57.212 29.630 0.00 0.00 0.00 2.52
1645 1716 8.956426 ACCACATGAATAATACGTGAATTTTCT 58.044 29.630 0.00 0.00 0.00 2.52
1646 1717 9.009327 CACCACATGAATAATACGTGAATTTTC 57.991 33.333 0.00 0.00 0.00 2.29
1647 1718 7.487829 GCACCACATGAATAATACGTGAATTTT 59.512 33.333 0.00 0.00 0.00 1.82
1648 1719 6.972328 GCACCACATGAATAATACGTGAATTT 59.028 34.615 0.00 0.00 0.00 1.82
1649 1720 6.494842 GCACCACATGAATAATACGTGAATT 58.505 36.000 0.00 0.00 0.00 2.17
1650 1721 5.277297 CGCACCACATGAATAATACGTGAAT 60.277 40.000 0.00 0.00 0.00 2.57
1651 1722 4.033472 CGCACCACATGAATAATACGTGAA 59.967 41.667 0.00 0.00 0.00 3.18
1652 1723 3.553917 CGCACCACATGAATAATACGTGA 59.446 43.478 0.00 0.00 0.00 4.35
1653 1724 3.553917 TCGCACCACATGAATAATACGTG 59.446 43.478 0.00 0.00 0.00 4.49
1654 1725 3.554324 GTCGCACCACATGAATAATACGT 59.446 43.478 0.00 0.00 0.00 3.57
1655 1726 3.059868 GGTCGCACCACATGAATAATACG 60.060 47.826 0.00 0.00 38.42 3.06
1692 1763 6.962686 ACACCGAAGAAGGTAACAATTTAAC 58.037 36.000 0.00 0.00 43.89 2.01
1700 1774 5.488645 TTGAAAACACCGAAGAAGGTAAC 57.511 39.130 0.00 0.00 43.89 2.50
1712 1786 7.181143 TGTTAAGTCGTAGATTGAAAACACC 57.819 36.000 0.00 0.00 40.67 4.16
1822 1897 5.124776 TGCTTTGCCTGTAATTACATACACC 59.875 40.000 18.35 10.53 35.36 4.16
1823 1898 6.189677 TGCTTTGCCTGTAATTACATACAC 57.810 37.500 18.35 9.02 35.36 2.90
2000 2078 5.419542 GAAAGCTGTATCCATGTCACAGTA 58.580 41.667 15.77 0.00 41.39 2.74
2075 2155 9.706691 CACAGATAAGAGAACAAAACTAAGGTA 57.293 33.333 0.00 0.00 0.00 3.08
2388 2501 6.146216 CCTAAACGTTAATGCACAAACATGA 58.854 36.000 0.00 0.00 0.00 3.07
2469 2583 7.220740 TGGTTAATCACACATTCTAGTGACAA 58.779 34.615 0.57 0.00 46.38 3.18
2594 2709 7.595819 TCAACAAATCAAGGGATTGTACTTT 57.404 32.000 0.00 0.00 42.87 2.66
2797 2921 9.788960 ATGTTTGAAAAGTCTCAAAAGTACTTC 57.211 29.630 8.95 0.00 44.66 3.01
2973 3097 6.806249 CACAGTCAACAACTTACACACATTTT 59.194 34.615 0.00 0.00 35.45 1.82
3000 3124 3.181475 TGCCCTCTATGAATCTTGACGAC 60.181 47.826 0.00 0.00 0.00 4.34
3010 3134 0.983467 TGCAGTGTGCCCTCTATGAA 59.017 50.000 0.00 0.00 44.23 2.57
3139 3270 0.596859 GGCTCCCTGCGTATAACGAC 60.597 60.000 3.22 0.00 46.05 4.34
3382 3513 0.541863 CAGAATACCCCCTGCGAAGT 59.458 55.000 0.00 0.00 0.00 3.01
3466 3626 1.929836 GCATTTCAGAGTACGCAGGAG 59.070 52.381 0.00 0.00 0.00 3.69
3524 3730 7.891183 TGCAAGGTCTAAACTGGGATAAATAAA 59.109 33.333 0.00 0.00 0.00 1.40
3525 3731 7.406916 TGCAAGGTCTAAACTGGGATAAATAA 58.593 34.615 0.00 0.00 0.00 1.40
3526 3732 6.964464 TGCAAGGTCTAAACTGGGATAAATA 58.036 36.000 0.00 0.00 0.00 1.40
3527 3733 5.826643 TGCAAGGTCTAAACTGGGATAAAT 58.173 37.500 0.00 0.00 0.00 1.40
3701 3955 1.484653 AGGGTGCAAAAGGACCAAAAC 59.515 47.619 8.41 0.00 33.48 2.43
3710 3965 7.174253 TGTTACATTAACTAGAGGGTGCAAAAG 59.826 37.037 0.00 0.00 39.38 2.27
3730 3985 7.503521 TCTTTGCAATGTACTGAATGTTACA 57.496 32.000 11.67 0.00 0.00 2.41
3739 4002 6.441274 ACTGATGTTTCTTTGCAATGTACTG 58.559 36.000 11.67 5.77 0.00 2.74
3780 4043 4.256920 ACATGTCTGGTAGCATTCTGTTC 58.743 43.478 0.00 0.00 0.00 3.18
3781 4044 4.292186 ACATGTCTGGTAGCATTCTGTT 57.708 40.909 0.00 0.00 0.00 3.16
3782 4045 3.988976 ACATGTCTGGTAGCATTCTGT 57.011 42.857 0.00 0.00 0.00 3.41
3783 4046 5.178061 TGTTACATGTCTGGTAGCATTCTG 58.822 41.667 0.00 0.00 28.81 3.02
3784 4047 5.420725 TGTTACATGTCTGGTAGCATTCT 57.579 39.130 0.00 0.00 28.81 2.40
3785 4048 7.571983 GCATATGTTACATGTCTGGTAGCATTC 60.572 40.741 8.26 0.00 41.15 2.67
3786 4049 6.205464 GCATATGTTACATGTCTGGTAGCATT 59.795 38.462 8.26 0.00 41.15 3.56
3788 4051 5.056480 GCATATGTTACATGTCTGGTAGCA 58.944 41.667 8.26 0.00 36.59 3.49
3789 4052 5.300752 AGCATATGTTACATGTCTGGTAGC 58.699 41.667 8.26 0.00 0.00 3.58
3790 4053 6.422100 GTGAGCATATGTTACATGTCTGGTAG 59.578 42.308 8.26 0.00 0.00 3.18
3791 4054 6.280643 GTGAGCATATGTTACATGTCTGGTA 58.719 40.000 8.26 0.00 0.00 3.25
3797 4060 5.102953 ACTGGTGAGCATATGTTACATGT 57.897 39.130 8.26 2.69 0.00 3.21
3798 4061 6.763135 AGTTACTGGTGAGCATATGTTACATG 59.237 38.462 8.26 0.00 0.00 3.21
3801 4064 5.523916 CCAGTTACTGGTGAGCATATGTTAC 59.476 44.000 22.37 1.49 45.82 2.50
3901 4411 9.169592 GTAACTGGTACTGCAGGAAAAATAATA 57.830 33.333 19.93 0.00 0.00 0.98
3947 4457 2.257207 ACGAGACCTCCCTGAAATTCA 58.743 47.619 0.00 0.00 0.00 2.57
3977 4487 3.478509 GATAGCGAGGAGAGTAGGAACA 58.521 50.000 0.00 0.00 0.00 3.18
3979 4489 2.550423 CCGATAGCGAGGAGAGTAGGAA 60.550 54.545 0.00 0.00 40.82 3.36
4075 4597 7.872061 TGAATGATAGGGGAATAGCTTTAGA 57.128 36.000 0.00 0.00 0.00 2.10
4101 4623 4.412796 TTAGCAGAGAGTGGATGGATTG 57.587 45.455 0.00 0.00 0.00 2.67
4193 4745 2.153645 TGTGTGTGATGTGATCTTGGC 58.846 47.619 0.00 0.00 0.00 4.52
4322 4880 9.807649 ATCCATTACTTTCATGACAAAAATAGC 57.192 29.630 0.00 0.00 0.00 2.97
4331 4889 7.770897 ACCTAGAACATCCATTACTTTCATGAC 59.229 37.037 0.00 0.00 0.00 3.06
4333 4891 8.511604 AACCTAGAACATCCATTACTTTCATG 57.488 34.615 0.00 0.00 0.00 3.07
4334 4892 9.178758 GAAACCTAGAACATCCATTACTTTCAT 57.821 33.333 0.00 0.00 0.00 2.57
4349 4908 5.695363 ACTTGAAACGCTAGAAACCTAGAAC 59.305 40.000 0.00 0.00 36.58 3.01
4357 4916 8.597662 ACATAGTAAACTTGAAACGCTAGAAA 57.402 30.769 0.00 0.00 0.00 2.52
4364 4924 7.813852 AGAGCTACATAGTAAACTTGAAACG 57.186 36.000 0.00 0.00 0.00 3.60
4464 5035 6.847036 AGCAAATAAGGGAGAGGTAGATAAGT 59.153 38.462 0.00 0.00 0.00 2.24
4467 5038 7.691993 AAAGCAAATAAGGGAGAGGTAGATA 57.308 36.000 0.00 0.00 0.00 1.98
4468 5039 6.582929 AAAGCAAATAAGGGAGAGGTAGAT 57.417 37.500 0.00 0.00 0.00 1.98
4469 5040 7.691993 ATAAAGCAAATAAGGGAGAGGTAGA 57.308 36.000 0.00 0.00 0.00 2.59
4470 5041 9.847224 TTTATAAAGCAAATAAGGGAGAGGTAG 57.153 33.333 0.00 0.00 0.00 3.18
4472 5043 8.336987 AGTTTATAAAGCAAATAAGGGAGAGGT 58.663 33.333 0.00 0.00 0.00 3.85
4473 5044 8.753497 AGTTTATAAAGCAAATAAGGGAGAGG 57.247 34.615 0.00 0.00 0.00 3.69
4499 5070 2.351641 CGTGCTGGCAAATTAGCTTCAA 60.352 45.455 0.00 0.00 40.52 2.69
4500 5071 1.199789 CGTGCTGGCAAATTAGCTTCA 59.800 47.619 0.00 0.00 40.52 3.02
4502 5073 1.068333 CACGTGCTGGCAAATTAGCTT 60.068 47.619 0.82 0.00 40.52 3.74
4538 5109 6.100404 TGCTCAAAGGCATGTAAAAGAAAT 57.900 33.333 0.00 0.00 37.29 2.17
4541 5112 5.472148 CATTGCTCAAAGGCATGTAAAAGA 58.528 37.500 0.00 0.00 42.09 2.52
4607 5260 9.941325 ACATTAGAAACAATTTGGCATATGAAA 57.059 25.926 6.97 0.00 0.00 2.69
4610 5263 9.800433 TGTACATTAGAAACAATTTGGCATATG 57.200 29.630 0.00 0.00 0.00 1.78
4611 5264 9.801873 GTGTACATTAGAAACAATTTGGCATAT 57.198 29.630 0.00 0.00 0.00 1.78
4612 5265 9.019656 AGTGTACATTAGAAACAATTTGGCATA 57.980 29.630 0.00 0.00 0.00 3.14
4613 5266 7.814107 CAGTGTACATTAGAAACAATTTGGCAT 59.186 33.333 0.00 0.00 0.00 4.40
4614 5267 7.144661 CAGTGTACATTAGAAACAATTTGGCA 58.855 34.615 0.00 0.00 0.00 4.92
4615 5268 6.089417 GCAGTGTACATTAGAAACAATTTGGC 59.911 38.462 0.00 0.00 0.00 4.52
4616 5269 7.144661 TGCAGTGTACATTAGAAACAATTTGG 58.855 34.615 0.00 0.00 0.00 3.28
4617 5270 8.075574 TCTGCAGTGTACATTAGAAACAATTTG 58.924 33.333 14.67 0.00 0.00 2.32
4618 5271 8.165239 TCTGCAGTGTACATTAGAAACAATTT 57.835 30.769 14.67 0.00 0.00 1.82
4619 5272 7.744087 TCTGCAGTGTACATTAGAAACAATT 57.256 32.000 14.67 0.00 0.00 2.32
4620 5273 7.928307 ATCTGCAGTGTACATTAGAAACAAT 57.072 32.000 14.67 0.00 0.00 2.71
4621 5274 9.098355 GATATCTGCAGTGTACATTAGAAACAA 57.902 33.333 14.67 0.00 0.00 2.83
4622 5275 8.478066 AGATATCTGCAGTGTACATTAGAAACA 58.522 33.333 14.67 0.00 0.00 2.83
4623 5276 8.879342 AGATATCTGCAGTGTACATTAGAAAC 57.121 34.615 14.67 0.00 0.00 2.78
4624 5277 9.534565 GAAGATATCTGCAGTGTACATTAGAAA 57.465 33.333 14.67 0.00 0.00 2.52
4625 5278 8.144478 GGAAGATATCTGCAGTGTACATTAGAA 58.856 37.037 14.67 0.00 0.00 2.10
4626 5279 7.255977 GGGAAGATATCTGCAGTGTACATTAGA 60.256 40.741 14.67 1.42 0.00 2.10
4627 5280 6.870965 GGGAAGATATCTGCAGTGTACATTAG 59.129 42.308 14.67 0.00 0.00 1.73
4628 5281 6.554982 AGGGAAGATATCTGCAGTGTACATTA 59.445 38.462 14.67 0.00 0.00 1.90
4629 5282 5.367937 AGGGAAGATATCTGCAGTGTACATT 59.632 40.000 14.67 6.82 0.00 2.71
4630 5283 4.904251 AGGGAAGATATCTGCAGTGTACAT 59.096 41.667 14.67 1.49 0.00 2.29
4631 5284 4.290093 AGGGAAGATATCTGCAGTGTACA 58.710 43.478 14.67 0.00 0.00 2.90
4632 5285 4.946478 AGGGAAGATATCTGCAGTGTAC 57.054 45.455 14.67 4.73 0.00 2.90
4633 5286 4.962362 TCAAGGGAAGATATCTGCAGTGTA 59.038 41.667 14.67 8.74 0.00 2.90
4634 5287 3.776969 TCAAGGGAAGATATCTGCAGTGT 59.223 43.478 14.67 6.61 0.00 3.55
4635 5288 4.412796 TCAAGGGAAGATATCTGCAGTG 57.587 45.455 14.67 7.04 0.00 3.66
4636 5289 4.906664 AGATCAAGGGAAGATATCTGCAGT 59.093 41.667 14.67 3.75 0.00 4.40
4637 5290 5.481105 GAGATCAAGGGAAGATATCTGCAG 58.519 45.833 12.98 7.63 32.48 4.41
4638 5291 4.285517 GGAGATCAAGGGAAGATATCTGCA 59.714 45.833 12.98 0.00 35.72 4.41
4639 5292 4.531732 AGGAGATCAAGGGAAGATATCTGC 59.468 45.833 5.86 3.61 34.88 4.26
4640 5293 6.684897 AAGGAGATCAAGGGAAGATATCTG 57.315 41.667 5.86 0.00 34.88 2.90
4641 5294 7.038373 GCTAAAGGAGATCAAGGGAAGATATCT 60.038 40.741 0.00 0.00 34.88 1.98
4642 5295 7.102993 GCTAAAGGAGATCAAGGGAAGATATC 58.897 42.308 0.00 0.00 33.99 1.63
4643 5296 6.560304 TGCTAAAGGAGATCAAGGGAAGATAT 59.440 38.462 0.00 0.00 0.00 1.63
4644 5297 5.905331 TGCTAAAGGAGATCAAGGGAAGATA 59.095 40.000 0.00 0.00 0.00 1.98
4645 5298 4.723789 TGCTAAAGGAGATCAAGGGAAGAT 59.276 41.667 0.00 0.00 0.00 2.40
4646 5299 4.104086 TGCTAAAGGAGATCAAGGGAAGA 58.896 43.478 0.00 0.00 0.00 2.87
4647 5300 4.494091 TGCTAAAGGAGATCAAGGGAAG 57.506 45.455 0.00 0.00 0.00 3.46
4648 5301 4.289672 AGTTGCTAAAGGAGATCAAGGGAA 59.710 41.667 0.00 0.00 0.00 3.97
4649 5302 3.846588 AGTTGCTAAAGGAGATCAAGGGA 59.153 43.478 0.00 0.00 0.00 4.20
4650 5303 3.944015 CAGTTGCTAAAGGAGATCAAGGG 59.056 47.826 0.00 0.00 0.00 3.95
4651 5304 3.376546 GCAGTTGCTAAAGGAGATCAAGG 59.623 47.826 0.00 0.00 38.21 3.61
4652 5305 4.612932 GCAGTTGCTAAAGGAGATCAAG 57.387 45.455 0.00 0.00 38.21 3.02
4706 5359 8.611051 ACTAGAATTTCATAGGGTAACTCTGT 57.389 34.615 0.00 0.00 0.00 3.41
4754 5407 3.068732 TCTTATGATGCTGGGTTCGAGAG 59.931 47.826 0.00 0.00 0.00 3.20
4755 5408 3.031013 TCTTATGATGCTGGGTTCGAGA 58.969 45.455 0.00 0.00 0.00 4.04
4811 5465 4.982916 GGTACGTGCATATTCCAGAAGTAG 59.017 45.833 5.86 0.00 0.00 2.57
4829 5483 2.034812 GGCCTTGTATGAGAGAGGTACG 59.965 54.545 0.00 0.00 0.00 3.67
4830 5484 2.365941 GGGCCTTGTATGAGAGAGGTAC 59.634 54.545 0.84 0.00 0.00 3.34
4832 5486 1.008938 AGGGCCTTGTATGAGAGAGGT 59.991 52.381 0.00 0.00 0.00 3.85
4833 5487 1.799933 AGGGCCTTGTATGAGAGAGG 58.200 55.000 0.00 0.00 0.00 3.69
4834 5488 3.826157 CTCTAGGGCCTTGTATGAGAGAG 59.174 52.174 19.66 15.09 32.45 3.20
4835 5489 3.205507 ACTCTAGGGCCTTGTATGAGAGA 59.794 47.826 27.51 14.95 34.41 3.10
4836 5490 3.571590 ACTCTAGGGCCTTGTATGAGAG 58.428 50.000 21.74 21.74 36.01 3.20
5037 5699 3.493176 GCAATATGGGAGGCACCAATTTC 60.493 47.826 2.69 0.00 45.13 2.17
5234 5909 1.227943 GTGGCTCAGTTGTGGCTCA 60.228 57.895 8.80 0.00 35.49 4.26
5319 5994 8.980596 TGAATGCCTTAATCTATTTTTGTGGAT 58.019 29.630 0.00 0.00 0.00 3.41
5561 6244 3.682858 GGCAGTCAACGTATTTTGCTCTA 59.317 43.478 12.66 0.00 0.00 2.43
5590 6275 3.055891 GGCTTCATGTGTTAAAATGCCCT 60.056 43.478 0.00 0.00 32.50 5.19
5658 6348 5.590530 TTTGTGCAAGTAAACAAGGATGT 57.409 34.783 0.00 0.00 43.14 3.06
5659 6349 7.481275 AAATTTGTGCAAGTAAACAAGGATG 57.519 32.000 0.00 0.00 37.57 3.51
5660 6350 8.504812 AAAAATTTGTGCAAGTAAACAAGGAT 57.495 26.923 0.00 0.00 37.57 3.24
5661 6351 7.913674 AAAAATTTGTGCAAGTAAACAAGGA 57.086 28.000 0.00 0.00 37.57 3.36
5719 6409 6.151648 CCAAGCTCACTGGATCTCAAAATTAA 59.848 38.462 0.00 0.00 0.00 1.40
5720 6410 5.649395 CCAAGCTCACTGGATCTCAAAATTA 59.351 40.000 0.00 0.00 0.00 1.40
5722 6412 4.015084 CCAAGCTCACTGGATCTCAAAAT 58.985 43.478 0.00 0.00 0.00 1.82
5735 6426 0.307760 CGTTTGGTGACCAAGCTCAC 59.692 55.000 25.16 16.20 44.84 3.51
5742 6433 0.392729 AAACGGACGTTTGGTGACCA 60.393 50.000 20.42 0.00 45.34 4.02
5761 6452 8.370940 CCTCAATATATCAAGCTTCCTACAAGA 58.629 37.037 0.00 0.00 0.00 3.02
5762 6453 7.605691 CCCTCAATATATCAAGCTTCCTACAAG 59.394 40.741 0.00 0.00 0.00 3.16
5763 6454 7.453393 CCCTCAATATATCAAGCTTCCTACAA 58.547 38.462 0.00 0.00 0.00 2.41
5764 6455 6.013379 CCCCTCAATATATCAAGCTTCCTACA 60.013 42.308 0.00 0.00 0.00 2.74
5765 6456 6.213600 TCCCCTCAATATATCAAGCTTCCTAC 59.786 42.308 0.00 0.00 0.00 3.18
5860 6551 1.879380 CCTCTCGTGCCATTTTGTTCA 59.121 47.619 0.00 0.00 0.00 3.18
5875 6566 6.926630 ATATCTTTGATCCTACACCCTCTC 57.073 41.667 0.00 0.00 0.00 3.20
5901 6592 3.378427 GGCATAACTGAACAAGGCCTTAG 59.622 47.826 20.00 14.70 37.00 2.18
5914 6605 3.627395 TCAGTAGGTTGGGCATAACTG 57.373 47.619 4.28 0.00 0.00 3.16
6010 6701 1.831652 CTGGCTCCCGACAGTTTCCT 61.832 60.000 0.00 0.00 41.59 3.36
6036 6727 1.053835 TGCTTCCACAGGGTGAGACA 61.054 55.000 0.00 0.00 35.23 3.41
6046 6737 1.490490 AGAGTGAGGTTTGCTTCCACA 59.510 47.619 0.00 0.00 0.00 4.17
6062 6753 3.522731 CTCTAGCGCCGCCAGAGT 61.523 66.667 23.53 0.00 32.78 3.24
6063 6754 3.212682 TCTCTAGCGCCGCCAGAG 61.213 66.667 25.40 25.40 37.70 3.35
6064 6755 3.518998 GTCTCTAGCGCCGCCAGA 61.519 66.667 7.09 7.09 0.00 3.86
6065 6756 4.914420 CGTCTCTAGCGCCGCCAG 62.914 72.222 4.98 0.12 0.00 4.85
6067 6758 4.189188 TTCGTCTCTAGCGCCGCC 62.189 66.667 4.98 0.00 0.00 6.13
6068 6759 2.652496 CTTCGTCTCTAGCGCCGC 60.652 66.667 2.29 0.00 0.00 6.53
6069 6760 2.024871 CCTTCGTCTCTAGCGCCG 59.975 66.667 2.29 0.00 0.00 6.46
6070 6761 2.413765 CCCTTCGTCTCTAGCGCC 59.586 66.667 2.29 0.00 0.00 6.53
6071 6762 2.278923 GCCCTTCGTCTCTAGCGC 60.279 66.667 0.00 0.00 0.00 5.92
6072 6763 1.064946 CTGCCCTTCGTCTCTAGCG 59.935 63.158 0.00 0.00 0.00 4.26
6073 6764 0.383949 CTCTGCCCTTCGTCTCTAGC 59.616 60.000 0.00 0.00 0.00 3.42
6074 6765 1.946768 CTCTCTGCCCTTCGTCTCTAG 59.053 57.143 0.00 0.00 0.00 2.43
6075 6766 2.019668 GCTCTCTGCCCTTCGTCTCTA 61.020 57.143 0.00 0.00 35.15 2.43
6076 6767 1.319614 GCTCTCTGCCCTTCGTCTCT 61.320 60.000 0.00 0.00 35.15 3.10
6077 6768 1.140804 GCTCTCTGCCCTTCGTCTC 59.859 63.158 0.00 0.00 35.15 3.36
6078 6769 2.705821 CGCTCTCTGCCCTTCGTCT 61.706 63.158 0.00 0.00 38.78 4.18
6079 6770 2.202676 CGCTCTCTGCCCTTCGTC 60.203 66.667 0.00 0.00 38.78 4.20
6080 6771 4.443266 GCGCTCTCTGCCCTTCGT 62.443 66.667 0.00 0.00 38.78 3.85
6081 6772 2.775856 TAGCGCTCTCTGCCCTTCG 61.776 63.158 16.34 0.00 38.78 3.79
6082 6773 1.227118 GTAGCGCTCTCTGCCCTTC 60.227 63.158 16.34 0.00 38.78 3.46
6083 6774 2.896443 GTAGCGCTCTCTGCCCTT 59.104 61.111 16.34 0.00 38.78 3.95
6364 7055 0.246635 CTCCGGTTGGACACGATCTT 59.753 55.000 0.00 0.00 40.17 2.40
6365 7056 1.605058 CCTCCGGTTGGACACGATCT 61.605 60.000 0.00 0.00 40.17 2.75
6366 7057 1.153628 CCTCCGGTTGGACACGATC 60.154 63.158 0.00 0.00 40.17 3.69
6367 7058 2.978824 CCTCCGGTTGGACACGAT 59.021 61.111 0.00 0.00 40.17 3.73
6368 7059 3.998672 GCCTCCGGTTGGACACGA 61.999 66.667 17.95 0.00 40.17 4.35
6369 7060 3.818121 TTGCCTCCGGTTGGACACG 62.818 63.158 17.95 0.00 40.17 4.49
6370 7061 1.303317 ATTGCCTCCGGTTGGACAC 60.303 57.895 17.95 3.65 40.17 3.67
6371 7062 1.002624 GATTGCCTCCGGTTGGACA 60.003 57.895 17.95 12.61 40.17 4.02
6372 7063 2.106683 CGATTGCCTCCGGTTGGAC 61.107 63.158 17.95 10.63 40.17 4.02
6373 7064 2.267642 CGATTGCCTCCGGTTGGA 59.732 61.111 17.95 1.97 43.88 3.53
6374 7065 3.508840 GCGATTGCCTCCGGTTGG 61.509 66.667 0.00 6.62 33.98 3.77
6375 7066 2.745884 TGCGATTGCCTCCGGTTG 60.746 61.111 0.00 0.00 41.78 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.