Multiple sequence alignment - TraesCS4A01G286600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G286600 chr4A 100.000 4134 0 0 1 4134 591881030 591876897 0.000000e+00 7635.0
1 TraesCS4A01G286600 chr4A 94.068 118 6 1 305 421 593739136 593739019 1.180000e-40 178.0
2 TraesCS4A01G286600 chr4A 86.441 118 14 1 168 285 739438048 739437933 1.210000e-25 128.0
3 TraesCS4A01G286600 chr4D 93.899 1967 89 15 2190 4134 10992080 10990123 0.000000e+00 2939.0
4 TraesCS4A01G286600 chr4D 81.107 1138 109 57 931 2024 10993235 10992160 0.000000e+00 813.0
5 TraesCS4A01G286600 chr4D 77.778 414 54 15 414 817 10993768 10993383 1.930000e-53 220.0
6 TraesCS4A01G286600 chr4D 90.299 134 12 1 307 440 483110247 483110115 1.530000e-39 174.0
7 TraesCS4A01G286600 chr4D 84.507 71 2 7 835 903 10993306 10993243 1.240000e-05 62.1
8 TraesCS4A01G286600 chr4B 92.303 1637 78 16 2536 4134 20747516 20745890 0.000000e+00 2281.0
9 TraesCS4A01G286600 chr4B 92.265 905 48 10 1652 2537 20748446 20747545 0.000000e+00 1264.0
10 TraesCS4A01G286600 chr4B 84.889 1039 46 48 627 1612 20749424 20748444 0.000000e+00 946.0
11 TraesCS4A01G286600 chr4B 82.967 182 17 8 1845 2024 557976088 557975919 7.160000e-33 152.0
12 TraesCS4A01G286600 chr1B 96.460 113 4 0 4022 4134 252979891 252980003 1.960000e-43 187.0
13 TraesCS4A01G286600 chr1B 87.603 121 7 5 1846 1966 480422795 480422683 2.590000e-27 134.0
14 TraesCS4A01G286600 chr7A 94.872 117 6 0 310 426 269960319 269960435 2.540000e-42 183.0
15 TraesCS4A01G286600 chr7A 92.683 123 7 2 310 430 133053228 133053350 4.250000e-40 176.0
16 TraesCS4A01G286600 chr1A 96.396 111 4 0 307 417 376756231 376756341 2.540000e-42 183.0
17 TraesCS4A01G286600 chr7D 94.118 119 7 0 301 419 633342206 633342088 9.130000e-42 182.0
18 TraesCS4A01G286600 chr5D 92.188 128 10 0 295 422 335868908 335869035 9.130000e-42 182.0
19 TraesCS4A01G286600 chr2D 91.603 131 10 1 305 434 592790432 592790302 3.280000e-41 180.0
20 TraesCS4A01G286600 chr6A 85.465 172 16 4 1850 2021 540091424 540091586 1.980000e-38 171.0
21 TraesCS4A01G286600 chr6A 84.571 175 18 4 1850 2024 540122767 540122932 9.190000e-37 165.0
22 TraesCS4A01G286600 chr2A 91.803 122 10 0 296 417 35967813 35967934 1.980000e-38 171.0
23 TraesCS4A01G286600 chr3A 79.592 245 24 12 60 285 87705747 87705984 7.160000e-33 152.0
24 TraesCS4A01G286600 chr3A 86.441 118 14 1 168 285 716402445 716402330 1.210000e-25 128.0
25 TraesCS4A01G286600 chr7B 79.130 230 30 13 70 285 653003319 653003094 4.310000e-30 143.0
26 TraesCS4A01G286600 chr5A 87.931 116 12 1 171 286 1302955 1302842 7.210000e-28 135.0
27 TraesCS4A01G286600 chr5A 87.179 117 13 1 168 284 502529440 502529326 9.320000e-27 132.0
28 TraesCS4A01G286600 chr2B 86.555 119 14 1 167 285 11206259 11206143 3.350000e-26 130.0
29 TraesCS4A01G286600 chr2B 86.555 119 14 1 167 285 71291753 71291869 3.350000e-26 130.0
30 TraesCS4A01G286600 chr6B 86.555 119 13 2 167 285 19427111 19426996 1.210000e-25 128.0
31 TraesCS4A01G286600 chr6D 85.714 112 13 1 1913 2024 305134482 305134374 9.390000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G286600 chr4A 591876897 591881030 4133 True 7635.000 7635 100.00000 1 4134 1 chr4A.!!$R1 4133
1 TraesCS4A01G286600 chr4D 10990123 10993768 3645 True 1008.525 2939 84.32275 414 4134 4 chr4D.!!$R2 3720
2 TraesCS4A01G286600 chr4B 20745890 20749424 3534 True 1497.000 2281 89.81900 627 4134 3 chr4B.!!$R2 3507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.0 0.00 0.00 0.00 4.30 F
841 921 0.176910 CGAAGAGCTCTTTCTCCCCC 59.823 60.0 29.02 13.81 36.11 5.40 F
1036 1135 0.178961 AACCAACCAGGAAGAAGGGC 60.179 55.0 0.00 0.00 41.22 5.19 F
1080 1208 0.529378 GAGGGACAAAAGCATGGCAG 59.471 55.0 0.00 0.00 0.00 4.85 F
1633 1795 0.613777 AGTAAGGCCTCCGGTTTGAG 59.386 55.0 5.23 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 1831 0.109153 AAGGCGCCTGCATCATCATA 59.891 50.000 33.60 0.00 45.35 2.15 R
1701 1867 1.077429 GTCCATCCTTCCCAGCACC 60.077 63.158 0.00 0.00 0.00 5.01 R
2951 3183 1.082104 CAAAGGCCGCTTCGTCAAC 60.082 57.895 0.00 0.00 0.00 3.18 R
2961 3193 1.533625 TCAACTTCATCCAAAGGCCG 58.466 50.000 0.00 0.00 0.00 6.13 R
3260 3493 1.820519 CATGCAACTGCTACCATGGTT 59.179 47.619 25.38 7.42 42.66 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.504812 AAGATGTTTTTGCAGTTTAATTTGGT 57.495 26.923 0.00 0.00 0.00 3.67
26 27 8.504812 AGATGTTTTTGCAGTTTAATTTGGTT 57.495 26.923 0.00 0.00 0.00 3.67
27 28 9.606631 AGATGTTTTTGCAGTTTAATTTGGTTA 57.393 25.926 0.00 0.00 0.00 2.85
40 41 7.687005 TTAATTTGGTTAAACTGCAAAGACG 57.313 32.000 0.00 0.00 29.52 4.18
41 42 4.705337 TTTGGTTAAACTGCAAAGACGT 57.295 36.364 0.00 0.00 0.00 4.34
42 43 3.955771 TGGTTAAACTGCAAAGACGTC 57.044 42.857 7.70 7.70 0.00 4.34
43 44 3.537580 TGGTTAAACTGCAAAGACGTCT 58.462 40.909 13.58 13.58 0.00 4.18
44 45 3.942748 TGGTTAAACTGCAAAGACGTCTT 59.057 39.130 24.93 24.93 37.91 3.01
45 46 5.117584 TGGTTAAACTGCAAAGACGTCTTA 58.882 37.500 29.91 14.59 34.61 2.10
46 47 5.006941 TGGTTAAACTGCAAAGACGTCTTAC 59.993 40.000 29.91 23.88 34.61 2.34
47 48 5.006941 GGTTAAACTGCAAAGACGTCTTACA 59.993 40.000 29.91 26.66 34.61 2.41
48 49 6.293244 GGTTAAACTGCAAAGACGTCTTACAT 60.293 38.462 29.91 17.73 34.61 2.29
49 50 5.751243 AAACTGCAAAGACGTCTTACATT 57.249 34.783 29.91 20.96 34.61 2.71
50 51 5.751243 AACTGCAAAGACGTCTTACATTT 57.249 34.783 29.91 24.62 34.61 2.32
51 52 6.854496 AACTGCAAAGACGTCTTACATTTA 57.146 33.333 29.91 12.85 34.61 1.40
52 53 6.467723 ACTGCAAAGACGTCTTACATTTAG 57.532 37.500 29.91 21.64 34.61 1.85
53 54 5.408604 ACTGCAAAGACGTCTTACATTTAGG 59.591 40.000 29.91 19.11 34.61 2.69
54 55 5.302360 TGCAAAGACGTCTTACATTTAGGT 58.698 37.500 29.91 9.30 34.61 3.08
55 56 5.178623 TGCAAAGACGTCTTACATTTAGGTG 59.821 40.000 29.91 20.77 34.61 4.00
56 57 5.618561 CAAAGACGTCTTACATTTAGGTGC 58.381 41.667 29.91 0.00 34.61 5.01
57 58 4.803098 AGACGTCTTACATTTAGGTGCT 57.197 40.909 13.58 0.00 0.00 4.40
58 59 5.148651 AGACGTCTTACATTTAGGTGCTT 57.851 39.130 13.58 0.00 0.00 3.91
59 60 5.169295 AGACGTCTTACATTTAGGTGCTTC 58.831 41.667 13.58 0.00 0.00 3.86
60 61 4.251268 ACGTCTTACATTTAGGTGCTTCC 58.749 43.478 0.00 0.00 0.00 3.46
61 62 9.361969 AAGACGTCTTACATTTAGGTGCTTCCT 62.362 40.741 28.80 0.00 41.26 3.36
62 63 4.567159 CGTCTTACATTTAGGTGCTTCCTC 59.433 45.833 4.41 0.00 44.42 3.71
63 64 4.876679 GTCTTACATTTAGGTGCTTCCTCC 59.123 45.833 4.41 0.00 44.42 4.30
64 65 4.534500 TCTTACATTTAGGTGCTTCCTCCA 59.466 41.667 4.41 0.00 44.42 3.86
65 66 5.191722 TCTTACATTTAGGTGCTTCCTCCAT 59.808 40.000 4.41 0.00 44.42 3.41
66 67 4.322057 ACATTTAGGTGCTTCCTCCATT 57.678 40.909 4.41 0.00 44.42 3.16
67 68 4.677182 ACATTTAGGTGCTTCCTCCATTT 58.323 39.130 4.41 0.00 44.42 2.32
68 69 4.706962 ACATTTAGGTGCTTCCTCCATTTC 59.293 41.667 4.41 0.00 44.42 2.17
69 70 3.366052 TTAGGTGCTTCCTCCATTTCC 57.634 47.619 4.41 0.00 44.42 3.13
70 71 1.376649 AGGTGCTTCCTCCATTTCCT 58.623 50.000 0.00 0.00 44.42 3.36
71 72 1.713078 AGGTGCTTCCTCCATTTCCTT 59.287 47.619 0.00 0.00 44.42 3.36
72 73 2.110721 AGGTGCTTCCTCCATTTCCTTT 59.889 45.455 0.00 0.00 44.42 3.11
73 74 2.899900 GGTGCTTCCTCCATTTCCTTTT 59.100 45.455 0.00 0.00 0.00 2.27
74 75 4.086457 GGTGCTTCCTCCATTTCCTTTTA 58.914 43.478 0.00 0.00 0.00 1.52
75 76 4.158579 GGTGCTTCCTCCATTTCCTTTTAG 59.841 45.833 0.00 0.00 0.00 1.85
76 77 4.767409 GTGCTTCCTCCATTTCCTTTTAGT 59.233 41.667 0.00 0.00 0.00 2.24
77 78 5.010282 TGCTTCCTCCATTTCCTTTTAGTC 58.990 41.667 0.00 0.00 0.00 2.59
78 79 5.010282 GCTTCCTCCATTTCCTTTTAGTCA 58.990 41.667 0.00 0.00 0.00 3.41
79 80 5.654209 GCTTCCTCCATTTCCTTTTAGTCAT 59.346 40.000 0.00 0.00 0.00 3.06
80 81 6.828785 GCTTCCTCCATTTCCTTTTAGTCATA 59.171 38.462 0.00 0.00 0.00 2.15
81 82 7.503902 GCTTCCTCCATTTCCTTTTAGTCATAT 59.496 37.037 0.00 0.00 0.00 1.78
99 100 8.918202 AGTCATATAAAGTTTGGTCAAAGTCA 57.082 30.769 0.00 0.00 33.15 3.41
100 101 9.349713 AGTCATATAAAGTTTGGTCAAAGTCAA 57.650 29.630 0.00 0.00 33.15 3.18
101 102 9.959749 GTCATATAAAGTTTGGTCAAAGTCAAA 57.040 29.630 0.00 0.00 33.15 2.69
216 217 9.454585 TGGTATTATAGACGTTCGTATTTCTTG 57.545 33.333 0.00 0.00 0.00 3.02
217 218 9.669353 GGTATTATAGACGTTCGTATTTCTTGA 57.331 33.333 0.00 0.00 0.00 3.02
220 221 9.745880 ATTATAGACGTTCGTATTTCTTGATGT 57.254 29.630 0.00 0.00 0.00 3.06
223 224 7.878477 AGACGTTCGTATTTCTTGATGTAAA 57.122 32.000 0.00 0.00 0.00 2.01
224 225 8.475331 AGACGTTCGTATTTCTTGATGTAAAT 57.525 30.769 0.00 0.00 0.00 1.40
225 226 8.932791 AGACGTTCGTATTTCTTGATGTAAATT 58.067 29.630 0.00 0.00 0.00 1.82
226 227 9.537848 GACGTTCGTATTTCTTGATGTAAATTT 57.462 29.630 0.00 0.00 0.00 1.82
227 228 9.325150 ACGTTCGTATTTCTTGATGTAAATTTG 57.675 29.630 0.00 0.00 0.00 2.32
228 229 9.536558 CGTTCGTATTTCTTGATGTAAATTTGA 57.463 29.630 0.00 0.00 0.00 2.69
241 242 9.814899 TGATGTAAATTTGATCAAACTTTGTGT 57.185 25.926 22.71 4.93 32.51 3.72
255 256 6.663944 AACTTTGTGTAGTTTGACTCTGAC 57.336 37.500 0.00 0.00 34.81 3.51
256 257 5.116882 ACTTTGTGTAGTTTGACTCTGACC 58.883 41.667 0.00 0.00 0.00 4.02
257 258 4.746535 TTGTGTAGTTTGACTCTGACCA 57.253 40.909 0.00 0.00 0.00 4.02
258 259 4.746535 TGTGTAGTTTGACTCTGACCAA 57.253 40.909 0.00 0.00 0.00 3.67
259 260 5.092554 TGTGTAGTTTGACTCTGACCAAA 57.907 39.130 0.00 0.00 0.00 3.28
260 261 5.680619 TGTGTAGTTTGACTCTGACCAAAT 58.319 37.500 0.00 0.00 35.14 2.32
261 262 6.119536 TGTGTAGTTTGACTCTGACCAAATT 58.880 36.000 0.00 0.00 35.14 1.82
262 263 6.601613 TGTGTAGTTTGACTCTGACCAAATTT 59.398 34.615 0.00 0.00 35.14 1.82
263 264 7.122055 TGTGTAGTTTGACTCTGACCAAATTTT 59.878 33.333 0.00 0.00 35.14 1.82
264 265 8.617809 GTGTAGTTTGACTCTGACCAAATTTTA 58.382 33.333 0.00 0.00 35.14 1.52
265 266 9.349713 TGTAGTTTGACTCTGACCAAATTTTAT 57.650 29.630 0.00 0.00 35.14 1.40
268 269 8.504005 AGTTTGACTCTGACCAAATTTTATACG 58.496 33.333 0.00 0.00 35.14 3.06
269 270 7.972832 TTGACTCTGACCAAATTTTATACGT 57.027 32.000 0.00 0.00 0.00 3.57
270 271 7.359262 TGACTCTGACCAAATTTTATACGTG 57.641 36.000 0.00 0.00 0.00 4.49
271 272 6.370442 TGACTCTGACCAAATTTTATACGTGG 59.630 38.462 0.00 0.00 35.39 4.94
272 273 5.646360 ACTCTGACCAAATTTTATACGTGGG 59.354 40.000 0.00 0.00 33.43 4.61
273 274 4.944930 TCTGACCAAATTTTATACGTGGGG 59.055 41.667 0.00 0.00 33.43 4.96
274 275 4.664392 TGACCAAATTTTATACGTGGGGT 58.336 39.130 0.00 0.00 33.43 4.95
275 276 5.813383 TGACCAAATTTTATACGTGGGGTA 58.187 37.500 0.00 0.00 33.43 3.69
276 277 6.243900 TGACCAAATTTTATACGTGGGGTAA 58.756 36.000 0.00 0.00 34.09 2.85
277 278 6.718454 TGACCAAATTTTATACGTGGGGTAAA 59.282 34.615 0.00 0.00 34.09 2.01
278 279 7.232127 TGACCAAATTTTATACGTGGGGTAAAA 59.768 33.333 0.00 5.50 34.09 1.52
279 280 7.960262 ACCAAATTTTATACGTGGGGTAAAAA 58.040 30.769 0.00 0.00 34.09 1.94
280 281 8.089597 ACCAAATTTTATACGTGGGGTAAAAAG 58.910 33.333 0.00 1.15 34.09 2.27
281 282 8.305317 CCAAATTTTATACGTGGGGTAAAAAGA 58.695 33.333 0.00 0.00 34.09 2.52
282 283 9.694137 CAAATTTTATACGTGGGGTAAAAAGAA 57.306 29.630 0.00 0.00 34.09 2.52
284 285 9.695526 AATTTTATACGTGGGGTAAAAAGAAAC 57.304 29.630 0.00 0.00 34.09 2.78
285 286 8.462589 TTTTATACGTGGGGTAAAAAGAAACT 57.537 30.769 0.00 0.00 34.09 2.66
286 287 8.462589 TTTATACGTGGGGTAAAAAGAAACTT 57.537 30.769 0.00 0.00 34.09 2.66
287 288 9.566432 TTTATACGTGGGGTAAAAAGAAACTTA 57.434 29.630 0.00 0.00 34.09 2.24
288 289 9.737844 TTATACGTGGGGTAAAAAGAAACTTAT 57.262 29.630 0.00 0.00 34.09 1.73
289 290 6.964807 ACGTGGGGTAAAAAGAAACTTATT 57.035 33.333 0.00 0.00 0.00 1.40
290 291 9.737844 ATACGTGGGGTAAAAAGAAACTTATTA 57.262 29.630 0.00 0.00 34.09 0.98
291 292 8.102800 ACGTGGGGTAAAAAGAAACTTATTAG 57.897 34.615 0.00 0.00 0.00 1.73
292 293 7.938490 ACGTGGGGTAAAAAGAAACTTATTAGA 59.062 33.333 0.00 0.00 0.00 2.10
293 294 8.785946 CGTGGGGTAAAAAGAAACTTATTAGAA 58.214 33.333 0.00 0.00 0.00 2.10
315 316 7.787028 AGAAGATCCTTTCATTGTACTACTCC 58.213 38.462 0.00 0.00 0.00 3.85
316 317 6.487299 AGATCCTTTCATTGTACTACTCCC 57.513 41.667 0.00 0.00 0.00 4.30
317 318 6.206042 AGATCCTTTCATTGTACTACTCCCT 58.794 40.000 0.00 0.00 0.00 4.20
318 319 5.934402 TCCTTTCATTGTACTACTCCCTC 57.066 43.478 0.00 0.00 0.00 4.30
319 320 4.715297 TCCTTTCATTGTACTACTCCCTCC 59.285 45.833 0.00 0.00 0.00 4.30
320 321 4.441634 CCTTTCATTGTACTACTCCCTCCG 60.442 50.000 0.00 0.00 0.00 4.63
321 322 3.377253 TCATTGTACTACTCCCTCCGT 57.623 47.619 0.00 0.00 0.00 4.69
322 323 3.705051 TCATTGTACTACTCCCTCCGTT 58.295 45.455 0.00 0.00 0.00 4.44
323 324 3.698040 TCATTGTACTACTCCCTCCGTTC 59.302 47.826 0.00 0.00 0.00 3.95
324 325 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
325 326 1.020437 GTACTACTCCCTCCGTTCCG 58.980 60.000 0.00 0.00 0.00 4.30
326 327 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
327 328 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
328 329 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
329 330 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
330 331 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
331 332 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
332 333 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
333 334 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
334 335 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
335 336 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
336 337 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
337 338 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
338 339 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
339 340 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
340 341 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
341 342 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
342 343 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
343 344 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
344 345 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
345 346 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
346 347 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
347 348 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
348 349 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
349 350 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
350 351 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
351 352 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
352 353 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
353 354 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
354 355 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
355 356 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
356 357 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
357 358 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
358 359 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
359 360 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
360 361 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
361 362 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
362 363 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
363 364 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
405 406 9.878667 TCCATTTATGTGACGAGTAATTTAGAA 57.121 29.630 0.00 0.00 0.00 2.10
406 407 9.916397 CCATTTATGTGACGAGTAATTTAGAAC 57.084 33.333 0.00 0.00 0.00 3.01
407 408 9.619727 CATTTATGTGACGAGTAATTTAGAACG 57.380 33.333 0.00 0.00 0.00 3.95
408 409 7.745022 TTATGTGACGAGTAATTTAGAACGG 57.255 36.000 0.00 0.00 0.00 4.44
409 410 5.375417 TGTGACGAGTAATTTAGAACGGA 57.625 39.130 0.00 0.00 0.00 4.69
410 411 5.771469 TGTGACGAGTAATTTAGAACGGAA 58.229 37.500 0.00 0.00 0.00 4.30
411 412 5.860182 TGTGACGAGTAATTTAGAACGGAAG 59.140 40.000 0.00 0.00 0.00 3.46
412 413 5.287992 GTGACGAGTAATTTAGAACGGAAGG 59.712 44.000 0.00 0.00 0.00 3.46
436 437 7.178805 AGGAGTATTTCTTTAGGAACGTTCTCT 59.821 37.037 26.32 22.10 33.13 3.10
442 443 3.936372 TTAGGAACGTTCTCTGACTGG 57.064 47.619 26.32 0.00 0.00 4.00
448 449 1.072331 ACGTTCTCTGACTGGCCATTT 59.928 47.619 5.51 0.00 0.00 2.32
456 457 1.801771 TGACTGGCCATTTAACGAACG 59.198 47.619 5.51 0.00 0.00 3.95
460 461 1.194997 TGGCCATTTAACGAACGAACG 59.805 47.619 0.00 0.00 39.31 3.95
481 482 2.359354 CCGGCGGTCACCATTTCA 60.359 61.111 19.97 0.00 0.00 2.69
484 485 1.883021 GGCGGTCACCATTTCAAGG 59.117 57.895 0.00 0.00 0.00 3.61
490 491 3.057806 CGGTCACCATTTCAAGGGTAAAC 60.058 47.826 0.00 0.00 41.92 2.01
505 506 2.352323 GGTAAACCCAGCATGAAAACCG 60.352 50.000 0.00 0.00 39.69 4.44
509 510 1.213537 CCAGCATGAAAACCGCCTG 59.786 57.895 0.00 0.00 39.69 4.85
512 513 3.005540 GCATGAAAACCGCCTGGGG 62.006 63.158 3.33 3.33 41.60 4.96
523 524 0.958382 CGCCTGGGGTTTCATTTCGA 60.958 55.000 1.98 0.00 0.00 3.71
524 525 1.474330 GCCTGGGGTTTCATTTCGAT 58.526 50.000 0.00 0.00 0.00 3.59
525 526 1.824852 GCCTGGGGTTTCATTTCGATT 59.175 47.619 0.00 0.00 0.00 3.34
530 531 1.134818 GGGTTTCATTTCGATTGGCCC 60.135 52.381 0.00 0.00 0.00 5.80
536 537 1.037030 ATTTCGATTGGCCCATGCGT 61.037 50.000 0.00 0.00 38.85 5.24
537 538 1.932011 TTTCGATTGGCCCATGCGTG 61.932 55.000 0.00 0.00 38.85 5.34
538 539 4.557605 CGATTGGCCCATGCGTGC 62.558 66.667 0.00 0.00 38.85 5.34
557 558 2.183300 GCACCGCACGTGGAGATA 59.817 61.111 18.88 0.00 43.24 1.98
562 563 1.227234 CGCACGTGGAGATATGCCA 60.227 57.895 18.88 0.00 34.49 4.92
570 571 1.486310 TGGAGATATGCCACCACTGAC 59.514 52.381 0.00 0.00 0.00 3.51
574 575 0.178068 ATATGCCACCACTGACGGAC 59.822 55.000 0.00 0.00 0.00 4.79
591 593 1.604693 GGACGGACGGTTAGCATATGG 60.605 57.143 4.56 0.00 0.00 2.74
600 602 3.618594 CGGTTAGCATATGGATGGAATCG 59.381 47.826 4.56 0.00 46.86 3.34
609 611 1.153249 GATGGAATCGGTTGGCGGA 60.153 57.895 0.00 0.00 31.13 5.54
610 612 1.153168 ATGGAATCGGTTGGCGGAG 60.153 57.895 0.00 0.00 0.00 4.63
630 644 1.927895 CCAGAGCGATGACCAAGTAC 58.072 55.000 0.00 0.00 0.00 2.73
652 666 3.474570 AGCCAGCGGATCCCAGAC 61.475 66.667 6.06 0.00 0.00 3.51
686 700 2.100879 ATCCAATCGGCGGCCTACTC 62.101 60.000 18.34 0.00 0.00 2.59
687 701 2.499205 CAATCGGCGGCCTACTCA 59.501 61.111 18.34 0.00 0.00 3.41
688 702 1.592669 CAATCGGCGGCCTACTCAG 60.593 63.158 18.34 0.00 0.00 3.35
689 703 1.756950 AATCGGCGGCCTACTCAGA 60.757 57.895 18.34 5.95 0.00 3.27
690 704 2.017559 AATCGGCGGCCTACTCAGAC 62.018 60.000 18.34 0.00 0.00 3.51
691 705 4.208686 CGGCGGCCTACTCAGACC 62.209 72.222 18.34 0.00 0.00 3.85
692 706 3.851128 GGCGGCCTACTCAGACCC 61.851 72.222 12.87 0.00 0.00 4.46
693 707 3.075005 GCGGCCTACTCAGACCCA 61.075 66.667 0.00 0.00 0.00 4.51
694 708 3.082579 GCGGCCTACTCAGACCCAG 62.083 68.421 0.00 0.00 0.00 4.45
695 709 2.904131 GGCCTACTCAGACCCAGC 59.096 66.667 0.00 0.00 0.00 4.85
696 710 2.736826 GGCCTACTCAGACCCAGCC 61.737 68.421 0.00 0.00 0.00 4.85
697 711 2.736826 GCCTACTCAGACCCAGCCC 61.737 68.421 0.00 0.00 0.00 5.19
698 712 2.066999 CCTACTCAGACCCAGCCCC 61.067 68.421 0.00 0.00 0.00 5.80
699 713 1.306141 CTACTCAGACCCAGCCCCA 60.306 63.158 0.00 0.00 0.00 4.96
700 714 1.306141 TACTCAGACCCAGCCCCAG 60.306 63.158 0.00 0.00 0.00 4.45
701 715 4.106925 CTCAGACCCAGCCCCAGC 62.107 72.222 0.00 0.00 40.32 4.85
770 789 1.325640 GCACGCATGACAGTCAGTATG 59.674 52.381 9.64 3.85 37.54 2.39
771 790 2.610433 CACGCATGACAGTCAGTATGT 58.390 47.619 9.64 2.31 37.40 2.29
833 913 4.803426 CGCCGCCGAAGAGCTCTT 62.803 66.667 28.83 28.83 39.23 2.85
836 916 1.216710 CCGCCGAAGAGCTCTTTCT 59.783 57.895 29.02 8.42 36.11 2.52
838 918 0.804156 CGCCGAAGAGCTCTTTCTCC 60.804 60.000 29.02 15.56 36.11 3.71
841 921 0.176910 CGAAGAGCTCTTTCTCCCCC 59.823 60.000 29.02 13.81 36.11 5.40
842 922 0.176910 GAAGAGCTCTTTCTCCCCCG 59.823 60.000 29.02 0.00 36.11 5.73
904 984 0.554792 CCCAAGAGGCCATCCATCTT 59.445 55.000 5.01 1.09 33.23 2.40
1036 1135 0.178961 AACCAACCAGGAAGAAGGGC 60.179 55.000 0.00 0.00 41.22 5.19
1045 1144 0.829990 GGAAGAAGGGCAGAGAGAGG 59.170 60.000 0.00 0.00 0.00 3.69
1072 1200 2.027653 GGTGGAGAGAGAGGGACAAAAG 60.028 54.545 0.00 0.00 0.00 2.27
1080 1208 0.529378 GAGGGACAAAAGCATGGCAG 59.471 55.000 0.00 0.00 0.00 4.85
1282 1425 3.213402 GAGGACGAGGAGGCGAGG 61.213 72.222 0.00 0.00 34.83 4.63
1393 1542 1.242665 GGTGAGTCCGTCCGAGTTCT 61.243 60.000 0.00 0.00 0.00 3.01
1399 1548 1.201880 GTCCGTCCGAGTTCTTAAGCT 59.798 52.381 0.00 0.00 0.00 3.74
1402 1551 1.912110 CGTCCGAGTTCTTAAGCTTCG 59.088 52.381 0.00 12.97 0.00 3.79
1405 1554 3.548268 GTCCGAGTTCTTAAGCTTCGATG 59.452 47.826 18.43 0.00 0.00 3.84
1406 1555 2.282820 CCGAGTTCTTAAGCTTCGATGC 59.717 50.000 15.04 15.04 0.00 3.91
1412 1561 4.300189 TCTTAAGCTTCGATGCTCTCTC 57.700 45.455 24.21 0.00 43.24 3.20
1423 1572 2.720134 GCTCTCTCTCCGCTTGGCT 61.720 63.158 0.00 0.00 0.00 4.75
1424 1573 1.141449 CTCTCTCTCCGCTTGGCTG 59.859 63.158 0.00 0.00 0.00 4.85
1425 1574 2.186384 CTCTCTCCGCTTGGCTGG 59.814 66.667 0.00 0.00 0.00 4.85
1426 1575 2.604686 TCTCTCCGCTTGGCTGGT 60.605 61.111 0.00 0.00 0.00 4.00
1427 1576 2.435586 CTCTCCGCTTGGCTGGTG 60.436 66.667 0.00 0.00 0.00 4.17
1428 1577 3.241530 TCTCCGCTTGGCTGGTGT 61.242 61.111 0.00 0.00 0.00 4.16
1429 1578 3.052082 CTCCGCTTGGCTGGTGTG 61.052 66.667 0.00 0.00 0.00 3.82
1461 1610 1.047002 CCCGGATCTTCATGCTCTCT 58.953 55.000 0.73 0.00 0.00 3.10
1462 1611 1.415659 CCCGGATCTTCATGCTCTCTT 59.584 52.381 0.73 0.00 0.00 2.85
1473 1622 2.184579 CTCTCTTCCCGGCCGTTC 59.815 66.667 26.12 0.00 0.00 3.95
1501 1652 0.762418 TAGGTGTTGCCGGATATGGG 59.238 55.000 5.05 0.00 43.70 4.00
1516 1667 5.455326 CGGATATGGGTTTCCTCTCTTCAAT 60.455 44.000 0.00 0.00 0.00 2.57
1586 1746 6.441093 TGCAAAGCCATAGAGTTTCATTAG 57.559 37.500 0.00 0.00 0.00 1.73
1587 1747 5.163622 TGCAAAGCCATAGAGTTTCATTAGC 60.164 40.000 0.00 0.00 0.00 3.09
1588 1748 5.163622 GCAAAGCCATAGAGTTTCATTAGCA 60.164 40.000 0.00 0.00 0.00 3.49
1633 1795 0.613777 AGTAAGGCCTCCGGTTTGAG 59.386 55.000 5.23 0.00 0.00 3.02
1636 1798 1.580059 AAGGCCTCCGGTTTGAGATA 58.420 50.000 5.23 0.00 34.11 1.98
1639 1801 2.158755 AGGCCTCCGGTTTGAGATATTG 60.159 50.000 0.00 0.00 34.11 1.90
1643 1805 3.123804 CTCCGGTTTGAGATATTGTCCG 58.876 50.000 0.00 0.00 34.11 4.79
1645 1807 2.901249 CGGTTTGAGATATTGTCCGGT 58.099 47.619 0.00 0.00 34.05 5.28
1646 1808 2.864343 CGGTTTGAGATATTGTCCGGTC 59.136 50.000 0.00 0.00 34.05 4.79
1647 1809 3.677700 CGGTTTGAGATATTGTCCGGTCA 60.678 47.826 0.00 0.00 34.05 4.02
1649 1811 4.273480 GGTTTGAGATATTGTCCGGTCATG 59.727 45.833 1.21 0.00 0.00 3.07
1650 1812 3.111853 TGAGATATTGTCCGGTCATGC 57.888 47.619 1.21 0.00 0.00 4.06
1651 1813 2.700371 TGAGATATTGTCCGGTCATGCT 59.300 45.455 1.21 0.00 0.00 3.79
1652 1814 3.243873 TGAGATATTGTCCGGTCATGCTC 60.244 47.826 1.21 7.72 0.00 4.26
1653 1815 2.700371 AGATATTGTCCGGTCATGCTCA 59.300 45.455 1.21 0.00 0.00 4.26
1669 1831 2.823747 TGCTCATGCTCAAGCTGAAATT 59.176 40.909 3.32 0.00 42.66 1.82
1686 1852 1.171308 ATTATGATGATGCAGGCGCC 58.829 50.000 21.89 21.89 37.32 6.53
1764 1930 3.243468 TGTCATTGACAATTGCACCACTG 60.243 43.478 16.95 6.27 39.78 3.66
1976 2155 7.094248 TGCATCTAACCGTTTCTTACTAGTGTA 60.094 37.037 5.39 0.00 0.00 2.90
1982 2161 6.850555 ACCGTTTCTTACTAGTGTACATCTC 58.149 40.000 5.39 0.00 0.00 2.75
2003 2190 6.289834 TCTCCGAGAGTTGGTAGAATAGTAG 58.710 44.000 0.00 0.00 0.00 2.57
2026 2213 9.888878 GTAGTATATTCGTAACTACAGAATGCA 57.111 33.333 7.56 0.00 43.23 3.96
2041 2229 2.566833 ATGCACAAGAGTGGCTGTAA 57.433 45.000 0.00 0.00 45.98 2.41
2049 2237 4.067896 CAAGAGTGGCTGTAACTCAACAT 58.932 43.478 12.35 0.00 45.38 2.71
2101 2289 3.084536 TCCAGCCAATGAACTATGCAA 57.915 42.857 0.00 0.00 0.00 4.08
2135 2323 2.877168 CAAGTGCTCCATCCATAAGCTC 59.123 50.000 0.00 0.00 36.96 4.09
2233 2432 5.702670 TGATTTCTCAAGTCATCAACAGACC 59.297 40.000 0.00 0.00 36.68 3.85
2278 2477 9.406828 CTGAAATTTTTAGTGTAGTAAAAGGCC 57.593 33.333 0.00 0.00 34.25 5.19
2343 2542 7.887381 AGAGATCTGGATAACCAATACTAACG 58.113 38.462 0.00 0.00 46.32 3.18
2346 2545 6.229936 TCTGGATAACCAATACTAACGCTT 57.770 37.500 0.00 0.00 46.32 4.68
2687 2916 1.804748 GATGGTCCGAAGTTTCACCAC 59.195 52.381 6.30 0.01 41.74 4.16
2915 3147 3.765511 TGGCTTTTCCTGATTCTTGATGG 59.234 43.478 0.00 0.00 35.26 3.51
2916 3148 3.766051 GGCTTTTCCTGATTCTTGATGGT 59.234 43.478 0.00 0.00 0.00 3.55
2917 3149 4.221482 GGCTTTTCCTGATTCTTGATGGTT 59.779 41.667 0.00 0.00 0.00 3.67
2951 3183 8.627208 ATTATCAAACCTGAGGCATACATAAG 57.373 34.615 0.00 0.00 34.23 1.73
2961 3193 3.871594 AGGCATACATAAGTTGACGAAGC 59.128 43.478 0.00 0.00 0.00 3.86
2967 3199 0.034337 TAAGTTGACGAAGCGGCCTT 59.966 50.000 0.00 0.00 31.60 4.35
3151 3383 8.842358 ATTTCGACACAGAAATACCTCTTTTA 57.158 30.769 3.45 0.00 45.73 1.52
3178 3411 9.276590 TCCAATAGTATTCTTCATGCAATACAG 57.723 33.333 17.38 8.95 37.76 2.74
3183 3416 5.909621 ATTCTTCATGCAATACAGCTTGT 57.090 34.783 0.00 0.00 39.75 3.16
3195 3428 1.338973 ACAGCTTGTGACTGCAAATGG 59.661 47.619 4.31 0.00 38.79 3.16
3225 3458 6.983307 TGTAAAACATTTCCAACAACATCTGG 59.017 34.615 0.00 0.00 0.00 3.86
3319 3552 5.968528 AATTACAGTTTGCAAACCCGATA 57.031 34.783 33.09 19.47 39.71 2.92
3322 3555 2.952978 ACAGTTTGCAAACCCGATACAA 59.047 40.909 33.09 0.00 39.71 2.41
3323 3556 3.243267 ACAGTTTGCAAACCCGATACAAC 60.243 43.478 33.09 10.27 39.71 3.32
3336 3569 5.873164 ACCCGATACAACTCTGATTAACAAC 59.127 40.000 0.00 0.00 0.00 3.32
3358 3591 8.410912 ACAACTGAAAAGGTAAAAAGTGTATCC 58.589 33.333 0.00 0.00 0.00 2.59
3362 3595 9.280174 CTGAAAAGGTAAAAAGTGTATCCAGTA 57.720 33.333 0.00 0.00 0.00 2.74
3376 3609 9.256228 AGTGTATCCAGTAATATATACAGGTGG 57.744 37.037 0.00 0.00 35.95 4.61
3377 3610 8.475639 GTGTATCCAGTAATATATACAGGTGGG 58.524 40.741 0.00 0.00 35.95 4.61
3389 3622 0.250038 CAGGTGGGACCATAGATGCG 60.250 60.000 0.00 0.00 41.95 4.73
3396 3629 5.003804 GTGGGACCATAGATGCGATAAAAT 58.996 41.667 0.00 0.00 0.00 1.82
3473 3718 2.544267 GGTCACTTCAGTGTTGCACTAC 59.456 50.000 6.84 0.00 43.43 2.73
3505 3784 4.395625 ACTACCAACTTGGAAACTTAGCC 58.604 43.478 15.14 0.00 40.96 3.93
3521 3800 5.500234 ACTTAGCCAATCAGACTATGCAAA 58.500 37.500 0.00 0.00 0.00 3.68
3534 3813 8.509690 TCAGACTATGCAAATCTCAAGAAAAAG 58.490 33.333 0.00 0.00 0.00 2.27
3591 3873 4.437239 CATCACCTCGACTGCTAAAGAAT 58.563 43.478 0.00 0.00 0.00 2.40
3780 4062 7.799914 GCATTTGCAAACAGAAAATTTAGAAGG 59.200 33.333 15.41 0.00 41.59 3.46
3960 4242 0.108615 CCAGTGGAGTACCTTCAGCG 60.109 60.000 1.68 0.00 37.04 5.18
4077 4359 2.983229 AGCTCCATAACAGCTCTTGTG 58.017 47.619 0.00 0.00 44.25 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.504812 ACCAAATTAAACTGCAAAAACATCTT 57.495 26.923 0.00 0.00 0.00 2.40
1 2 8.504812 AACCAAATTAAACTGCAAAAACATCT 57.495 26.923 0.00 0.00 0.00 2.90
15 16 7.760340 ACGTCTTTGCAGTTTAACCAAATTAAA 59.240 29.630 0.00 0.00 39.87 1.52
16 17 7.259161 ACGTCTTTGCAGTTTAACCAAATTAA 58.741 30.769 0.00 0.00 0.00 1.40
17 18 6.797454 ACGTCTTTGCAGTTTAACCAAATTA 58.203 32.000 0.00 0.00 0.00 1.40
18 19 5.656480 ACGTCTTTGCAGTTTAACCAAATT 58.344 33.333 0.00 0.00 0.00 1.82
19 20 5.067283 AGACGTCTTTGCAGTTTAACCAAAT 59.933 36.000 13.58 0.00 0.00 2.32
20 21 4.396790 AGACGTCTTTGCAGTTTAACCAAA 59.603 37.500 13.58 0.00 0.00 3.28
21 22 3.942748 AGACGTCTTTGCAGTTTAACCAA 59.057 39.130 13.58 0.00 0.00 3.67
22 23 3.537580 AGACGTCTTTGCAGTTTAACCA 58.462 40.909 13.58 0.00 0.00 3.67
23 24 4.547406 AAGACGTCTTTGCAGTTTAACC 57.453 40.909 24.93 0.00 30.82 2.85
24 25 6.039781 TGTAAGACGTCTTTGCAGTTTAAC 57.960 37.500 33.82 22.07 37.40 2.01
25 26 6.854496 ATGTAAGACGTCTTTGCAGTTTAA 57.146 33.333 33.82 11.60 37.40 1.52
26 27 6.854496 AATGTAAGACGTCTTTGCAGTTTA 57.146 33.333 33.82 12.34 37.40 2.01
27 28 5.751243 AATGTAAGACGTCTTTGCAGTTT 57.249 34.783 33.82 20.55 37.40 2.66
28 29 5.751243 AAATGTAAGACGTCTTTGCAGTT 57.249 34.783 33.82 29.63 37.40 3.16
29 30 5.408604 CCTAAATGTAAGACGTCTTTGCAGT 59.591 40.000 33.82 26.50 37.40 4.40
30 31 5.408604 ACCTAAATGTAAGACGTCTTTGCAG 59.591 40.000 33.82 20.73 37.40 4.41
31 32 5.178623 CACCTAAATGTAAGACGTCTTTGCA 59.821 40.000 33.82 29.37 37.40 4.08
32 33 5.618561 CACCTAAATGTAAGACGTCTTTGC 58.381 41.667 33.82 25.44 37.40 3.68
33 34 5.408604 AGCACCTAAATGTAAGACGTCTTTG 59.591 40.000 33.82 22.59 37.40 2.77
34 35 5.548406 AGCACCTAAATGTAAGACGTCTTT 58.452 37.500 33.82 18.94 37.40 2.52
35 36 5.148651 AGCACCTAAATGTAAGACGTCTT 57.851 39.130 31.70 31.70 39.85 3.01
36 37 4.803098 AGCACCTAAATGTAAGACGTCT 57.197 40.909 13.58 13.58 0.00 4.18
37 38 4.329256 GGAAGCACCTAAATGTAAGACGTC 59.671 45.833 7.70 7.70 35.41 4.34
38 39 4.251268 GGAAGCACCTAAATGTAAGACGT 58.749 43.478 0.00 0.00 35.41 4.34
39 40 4.859629 GGAAGCACCTAAATGTAAGACG 57.140 45.455 0.00 0.00 35.41 4.18
52 53 2.222227 AAGGAAATGGAGGAAGCACC 57.778 50.000 0.00 0.00 39.35 5.01
53 54 4.767409 ACTAAAAGGAAATGGAGGAAGCAC 59.233 41.667 0.00 0.00 0.00 4.40
54 55 4.998051 ACTAAAAGGAAATGGAGGAAGCA 58.002 39.130 0.00 0.00 0.00 3.91
55 56 5.010282 TGACTAAAAGGAAATGGAGGAAGC 58.990 41.667 0.00 0.00 0.00 3.86
56 57 8.986929 ATATGACTAAAAGGAAATGGAGGAAG 57.013 34.615 0.00 0.00 0.00 3.46
74 75 8.918202 TGACTTTGACCAAACTTTATATGACT 57.082 30.769 0.00 0.00 0.00 3.41
75 76 9.959749 TTTGACTTTGACCAAACTTTATATGAC 57.040 29.630 0.00 0.00 0.00 3.06
76 77 9.959749 GTTTGACTTTGACCAAACTTTATATGA 57.040 29.630 0.00 0.00 45.05 2.15
190 191 9.454585 CAAGAAATACGAACGTCTATAATACCA 57.545 33.333 2.45 0.00 0.00 3.25
191 192 9.669353 TCAAGAAATACGAACGTCTATAATACC 57.331 33.333 2.45 0.00 0.00 2.73
194 195 9.745880 ACATCAAGAAATACGAACGTCTATAAT 57.254 29.630 2.45 0.00 0.00 1.28
197 198 9.577110 TTTACATCAAGAAATACGAACGTCTAT 57.423 29.630 2.45 0.00 0.00 1.98
198 199 8.969121 TTTACATCAAGAAATACGAACGTCTA 57.031 30.769 2.45 0.00 0.00 2.59
199 200 7.878477 TTTACATCAAGAAATACGAACGTCT 57.122 32.000 2.45 0.00 0.00 4.18
200 201 9.537848 AAATTTACATCAAGAAATACGAACGTC 57.462 29.630 2.45 0.00 0.00 4.34
201 202 9.325150 CAAATTTACATCAAGAAATACGAACGT 57.675 29.630 5.03 5.03 0.00 3.99
202 203 9.536558 TCAAATTTACATCAAGAAATACGAACG 57.463 29.630 0.00 0.00 0.00 3.95
215 216 9.814899 ACACAAAGTTTGATCAAATTTACATCA 57.185 25.926 24.07 7.58 31.37 3.07
232 233 5.585047 GGTCAGAGTCAAACTACACAAAGTT 59.415 40.000 0.00 0.00 41.46 2.66
233 234 5.116882 GGTCAGAGTCAAACTACACAAAGT 58.883 41.667 0.00 0.00 0.00 2.66
234 235 5.116180 TGGTCAGAGTCAAACTACACAAAG 58.884 41.667 0.00 0.00 0.00 2.77
235 236 5.092554 TGGTCAGAGTCAAACTACACAAA 57.907 39.130 0.00 0.00 0.00 2.83
236 237 4.746535 TGGTCAGAGTCAAACTACACAA 57.253 40.909 0.00 0.00 0.00 3.33
237 238 4.746535 TTGGTCAGAGTCAAACTACACA 57.253 40.909 0.00 0.00 0.00 3.72
238 239 6.619801 AATTTGGTCAGAGTCAAACTACAC 57.380 37.500 0.00 0.00 35.97 2.90
239 240 7.639113 AAAATTTGGTCAGAGTCAAACTACA 57.361 32.000 0.00 0.00 35.97 2.74
242 243 8.504005 CGTATAAAATTTGGTCAGAGTCAAACT 58.496 33.333 0.00 0.00 35.97 2.66
243 244 8.287503 ACGTATAAAATTTGGTCAGAGTCAAAC 58.712 33.333 0.00 0.00 35.97 2.93
244 245 8.286800 CACGTATAAAATTTGGTCAGAGTCAAA 58.713 33.333 0.00 2.40 37.29 2.69
245 246 7.094975 CCACGTATAAAATTTGGTCAGAGTCAA 60.095 37.037 0.00 0.00 0.00 3.18
246 247 6.370442 CCACGTATAAAATTTGGTCAGAGTCA 59.630 38.462 0.00 0.00 0.00 3.41
247 248 6.183360 CCCACGTATAAAATTTGGTCAGAGTC 60.183 42.308 0.00 0.00 0.00 3.36
248 249 5.646360 CCCACGTATAAAATTTGGTCAGAGT 59.354 40.000 0.00 0.00 0.00 3.24
249 250 5.065988 CCCCACGTATAAAATTTGGTCAGAG 59.934 44.000 0.00 0.00 0.00 3.35
250 251 4.944930 CCCCACGTATAAAATTTGGTCAGA 59.055 41.667 0.00 0.00 0.00 3.27
251 252 4.703093 ACCCCACGTATAAAATTTGGTCAG 59.297 41.667 0.00 0.00 0.00 3.51
252 253 4.664392 ACCCCACGTATAAAATTTGGTCA 58.336 39.130 0.00 0.00 0.00 4.02
253 254 6.756299 TTACCCCACGTATAAAATTTGGTC 57.244 37.500 0.00 0.00 0.00 4.02
254 255 7.536159 TTTTACCCCACGTATAAAATTTGGT 57.464 32.000 0.00 0.00 0.00 3.67
255 256 8.305317 TCTTTTTACCCCACGTATAAAATTTGG 58.695 33.333 0.00 0.00 30.53 3.28
256 257 9.694137 TTCTTTTTACCCCACGTATAAAATTTG 57.306 29.630 0.00 0.00 30.53 2.32
258 259 9.695526 GTTTCTTTTTACCCCACGTATAAAATT 57.304 29.630 0.00 0.00 30.53 1.82
259 260 9.081204 AGTTTCTTTTTACCCCACGTATAAAAT 57.919 29.630 0.00 0.00 30.53 1.82
260 261 8.462589 AGTTTCTTTTTACCCCACGTATAAAA 57.537 30.769 0.00 0.00 30.53 1.52
261 262 8.462589 AAGTTTCTTTTTACCCCACGTATAAA 57.537 30.769 0.00 0.00 0.00 1.40
262 263 9.737844 ATAAGTTTCTTTTTACCCCACGTATAA 57.262 29.630 0.00 0.00 0.00 0.98
263 264 9.737844 AATAAGTTTCTTTTTACCCCACGTATA 57.262 29.630 0.00 0.00 0.00 1.47
264 265 8.640063 AATAAGTTTCTTTTTACCCCACGTAT 57.360 30.769 0.00 0.00 0.00 3.06
265 266 9.218440 CTAATAAGTTTCTTTTTACCCCACGTA 57.782 33.333 0.00 0.00 0.00 3.57
266 267 6.964807 AATAAGTTTCTTTTTACCCCACGT 57.035 33.333 0.00 0.00 0.00 4.49
267 268 8.326680 TCTAATAAGTTTCTTTTTACCCCACG 57.673 34.615 0.00 0.00 0.00 4.94
289 290 8.915036 GGAGTAGTACAATGAAAGGATCTTCTA 58.085 37.037 2.52 0.00 0.00 2.10
290 291 7.147637 GGGAGTAGTACAATGAAAGGATCTTCT 60.148 40.741 2.52 0.00 0.00 2.85
291 292 6.987404 GGGAGTAGTACAATGAAAGGATCTTC 59.013 42.308 2.52 0.00 0.00 2.87
292 293 6.674419 AGGGAGTAGTACAATGAAAGGATCTT 59.326 38.462 2.52 0.00 0.00 2.40
293 294 6.206042 AGGGAGTAGTACAATGAAAGGATCT 58.794 40.000 2.52 0.00 0.00 2.75
294 295 6.463190 GGAGGGAGTAGTACAATGAAAGGATC 60.463 46.154 2.52 0.00 0.00 3.36
295 296 5.367060 GGAGGGAGTAGTACAATGAAAGGAT 59.633 44.000 2.52 0.00 0.00 3.24
296 297 4.715297 GGAGGGAGTAGTACAATGAAAGGA 59.285 45.833 2.52 0.00 0.00 3.36
297 298 4.441634 CGGAGGGAGTAGTACAATGAAAGG 60.442 50.000 2.52 0.00 0.00 3.11
298 299 4.159879 ACGGAGGGAGTAGTACAATGAAAG 59.840 45.833 2.52 0.00 0.00 2.62
299 300 4.091549 ACGGAGGGAGTAGTACAATGAAA 58.908 43.478 2.52 0.00 0.00 2.69
300 301 3.705051 ACGGAGGGAGTAGTACAATGAA 58.295 45.455 2.52 0.00 0.00 2.57
301 302 3.377253 ACGGAGGGAGTAGTACAATGA 57.623 47.619 2.52 0.00 0.00 2.57
302 303 3.181478 GGAACGGAGGGAGTAGTACAATG 60.181 52.174 2.52 0.00 0.00 2.82
303 304 3.029570 GGAACGGAGGGAGTAGTACAAT 58.970 50.000 2.52 0.00 0.00 2.71
304 305 2.450476 GGAACGGAGGGAGTAGTACAA 58.550 52.381 2.52 0.00 0.00 2.41
305 306 2.134789 GGAACGGAGGGAGTAGTACA 57.865 55.000 2.52 0.00 0.00 2.90
320 321 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
321 322 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
322 323 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
323 324 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
324 325 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
325 326 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
326 327 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
327 328 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
328 329 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
329 330 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
330 331 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
331 332 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
332 333 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
333 334 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
334 335 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
335 336 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
336 337 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
337 338 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
379 380 9.878667 TTCTAAATTACTCGTCACATAAATGGA 57.121 29.630 0.00 0.00 0.00 3.41
380 381 9.916397 GTTCTAAATTACTCGTCACATAAATGG 57.084 33.333 0.00 0.00 0.00 3.16
381 382 9.619727 CGTTCTAAATTACTCGTCACATAAATG 57.380 33.333 0.00 0.00 0.00 2.32
382 383 8.814235 CCGTTCTAAATTACTCGTCACATAAAT 58.186 33.333 0.00 0.00 0.00 1.40
383 384 8.028354 TCCGTTCTAAATTACTCGTCACATAAA 58.972 33.333 0.00 0.00 0.00 1.40
384 385 7.537715 TCCGTTCTAAATTACTCGTCACATAA 58.462 34.615 0.00 0.00 0.00 1.90
385 386 7.087409 TCCGTTCTAAATTACTCGTCACATA 57.913 36.000 0.00 0.00 0.00 2.29
386 387 5.957798 TCCGTTCTAAATTACTCGTCACAT 58.042 37.500 0.00 0.00 0.00 3.21
387 388 5.375417 TCCGTTCTAAATTACTCGTCACA 57.625 39.130 0.00 0.00 0.00 3.58
388 389 5.287992 CCTTCCGTTCTAAATTACTCGTCAC 59.712 44.000 0.00 0.00 0.00 3.67
389 390 5.183713 TCCTTCCGTTCTAAATTACTCGTCA 59.816 40.000 0.00 0.00 0.00 4.35
390 391 5.644644 TCCTTCCGTTCTAAATTACTCGTC 58.355 41.667 0.00 0.00 0.00 4.20
391 392 5.184671 ACTCCTTCCGTTCTAAATTACTCGT 59.815 40.000 0.00 0.00 0.00 4.18
392 393 5.648572 ACTCCTTCCGTTCTAAATTACTCG 58.351 41.667 0.00 0.00 0.00 4.18
393 394 9.597170 AAATACTCCTTCCGTTCTAAATTACTC 57.403 33.333 0.00 0.00 0.00 2.59
394 395 9.597170 GAAATACTCCTTCCGTTCTAAATTACT 57.403 33.333 0.00 0.00 0.00 2.24
395 396 9.597170 AGAAATACTCCTTCCGTTCTAAATTAC 57.403 33.333 0.00 0.00 0.00 1.89
397 398 9.516546 AAAGAAATACTCCTTCCGTTCTAAATT 57.483 29.630 0.00 0.00 0.00 1.82
399 400 9.649167 CTAAAGAAATACTCCTTCCGTTCTAAA 57.351 33.333 0.00 0.00 0.00 1.85
400 401 8.255905 CCTAAAGAAATACTCCTTCCGTTCTAA 58.744 37.037 0.00 0.00 0.00 2.10
401 402 7.616935 TCCTAAAGAAATACTCCTTCCGTTCTA 59.383 37.037 0.00 0.00 0.00 2.10
402 403 6.439692 TCCTAAAGAAATACTCCTTCCGTTCT 59.560 38.462 0.00 0.00 0.00 3.01
403 404 6.637657 TCCTAAAGAAATACTCCTTCCGTTC 58.362 40.000 0.00 0.00 0.00 3.95
404 405 6.616237 TCCTAAAGAAATACTCCTTCCGTT 57.384 37.500 0.00 0.00 0.00 4.44
405 406 6.404708 GTTCCTAAAGAAATACTCCTTCCGT 58.595 40.000 0.00 0.00 35.85 4.69
406 407 5.519206 CGTTCCTAAAGAAATACTCCTTCCG 59.481 44.000 0.00 0.00 35.85 4.30
407 408 6.404708 ACGTTCCTAAAGAAATACTCCTTCC 58.595 40.000 0.00 0.00 35.85 3.46
408 409 7.818446 AGAACGTTCCTAAAGAAATACTCCTTC 59.182 37.037 24.22 0.00 35.85 3.46
409 410 7.677892 AGAACGTTCCTAAAGAAATACTCCTT 58.322 34.615 24.22 0.00 35.85 3.36
410 411 7.178805 AGAGAACGTTCCTAAAGAAATACTCCT 59.821 37.037 24.22 0.00 35.85 3.69
411 412 7.275999 CAGAGAACGTTCCTAAAGAAATACTCC 59.724 40.741 24.22 0.00 35.85 3.85
412 413 8.027771 TCAGAGAACGTTCCTAAAGAAATACTC 58.972 37.037 24.22 10.47 35.85 2.59
422 423 2.029290 GCCAGTCAGAGAACGTTCCTAA 60.029 50.000 24.22 5.16 0.00 2.69
424 425 0.318762 GCCAGTCAGAGAACGTTCCT 59.681 55.000 24.22 17.39 0.00 3.36
436 437 1.801771 CGTTCGTTAAATGGCCAGTCA 59.198 47.619 13.05 0.00 0.00 3.41
442 443 1.460359 TCCGTTCGTTCGTTAAATGGC 59.540 47.619 0.00 0.00 0.00 4.40
448 449 1.081509 CGGGTCCGTTCGTTCGTTA 60.082 57.895 0.55 0.00 34.35 3.18
469 470 3.257375 GGTTTACCCTTGAAATGGTGACC 59.743 47.826 0.00 0.00 36.02 4.02
470 471 4.514781 GGTTTACCCTTGAAATGGTGAC 57.485 45.455 0.73 0.54 36.04 3.67
484 485 2.352323 CGGTTTTCATGCTGGGTTTACC 60.352 50.000 0.00 0.00 40.81 2.85
490 491 1.978617 AGGCGGTTTTCATGCTGGG 60.979 57.895 0.00 0.00 0.00 4.45
495 496 1.184970 AACCCCAGGCGGTTTTCATG 61.185 55.000 6.54 0.00 43.88 3.07
502 503 0.898326 GAAATGAAACCCCAGGCGGT 60.898 55.000 0.00 0.00 37.93 5.68
505 506 1.474330 ATCGAAATGAAACCCCAGGC 58.526 50.000 0.00 0.00 0.00 4.85
509 510 1.134818 GGCCAATCGAAATGAAACCCC 60.135 52.381 0.00 0.00 0.00 4.95
512 513 3.189285 CATGGGCCAATCGAAATGAAAC 58.811 45.455 11.89 0.00 0.00 2.78
554 555 0.464036 TCCGTCAGTGGTGGCATATC 59.536 55.000 0.00 0.00 0.00 1.63
557 558 2.347490 GTCCGTCAGTGGTGGCAT 59.653 61.111 0.00 0.00 0.00 4.40
562 563 3.667282 CGTCCGTCCGTCAGTGGT 61.667 66.667 0.00 0.00 0.00 4.16
565 566 1.580845 CTAACCGTCCGTCCGTCAGT 61.581 60.000 0.00 0.00 0.00 3.41
570 571 0.313043 ATATGCTAACCGTCCGTCCG 59.687 55.000 0.00 0.00 0.00 4.79
574 575 2.337583 CATCCATATGCTAACCGTCCG 58.662 52.381 0.00 0.00 0.00 4.79
591 593 1.153249 TCCGCCAACCGATTCCATC 60.153 57.895 0.00 0.00 40.02 3.51
609 611 1.220206 CTTGGTCATCGCTCTGGCT 59.780 57.895 0.00 0.00 36.09 4.75
610 612 0.175760 TACTTGGTCATCGCTCTGGC 59.824 55.000 0.00 0.00 0.00 4.85
611 613 1.478510 AGTACTTGGTCATCGCTCTGG 59.521 52.381 0.00 0.00 0.00 3.86
612 614 2.949451 AGTACTTGGTCATCGCTCTG 57.051 50.000 0.00 0.00 0.00 3.35
630 644 2.423446 GGATCCGCTGGCTGGTAG 59.577 66.667 0.00 0.00 0.00 3.18
652 666 2.109181 GATCGCCGGGAAGGAAGG 59.891 66.667 2.18 0.00 45.00 3.46
701 715 2.040043 ATCTCTCTGGGGCTGGGG 60.040 66.667 0.00 0.00 0.00 4.96
702 716 2.146061 GGATCTCTCTGGGGCTGGG 61.146 68.421 0.00 0.00 0.00 4.45
703 717 1.383664 TGGATCTCTCTGGGGCTGG 60.384 63.158 0.00 0.00 0.00 4.85
770 789 7.863666 AGCTAGAAACGGCGAGATATATATAC 58.136 38.462 16.62 0.00 0.00 1.47
771 790 9.205719 CTAGCTAGAAACGGCGAGATATATATA 57.794 37.037 16.15 0.00 34.04 0.86
833 913 1.212441 GAGAGACTAGTCGGGGGAGAA 59.788 57.143 17.07 0.00 34.09 2.87
836 916 1.525923 CGAGAGACTAGTCGGGGGA 59.474 63.158 17.07 0.00 32.40 4.81
841 921 1.092921 AGCTGCCGAGAGACTAGTCG 61.093 60.000 17.07 5.99 35.91 4.18
842 922 0.661020 GAGCTGCCGAGAGACTAGTC 59.339 60.000 15.41 15.41 0.00 2.59
904 984 4.033251 ATGGGGTCGGGGGAGGAA 62.033 66.667 0.00 0.00 0.00 3.36
924 1004 1.541672 GAGAGGAGGAGGAGGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
1036 1135 1.992277 CACCCACCCCCTCTCTCTG 60.992 68.421 0.00 0.00 0.00 3.35
1045 1144 1.687493 CTCTCTCTCCACCCACCCC 60.687 68.421 0.00 0.00 0.00 4.95
1114 1251 3.746949 GATCCTGCTCGTGCCAGGG 62.747 68.421 20.30 14.11 37.76 4.45
1161 1298 1.149782 AGGACAGGTGAGGAGGAGGA 61.150 60.000 0.00 0.00 0.00 3.71
1206 1346 3.859414 GAGGAGATGCGCCTGCCT 61.859 66.667 4.18 6.41 41.78 4.75
1393 1542 3.067461 GGAGAGAGAGCATCGAAGCTTAA 59.933 47.826 17.28 0.00 46.75 1.85
1399 1548 0.749818 AGCGGAGAGAGAGCATCGAA 60.750 55.000 0.00 0.00 42.67 3.71
1402 1551 0.249405 CCAAGCGGAGAGAGAGCATC 60.249 60.000 0.00 0.00 0.00 3.91
1405 1554 2.202864 GCCAAGCGGAGAGAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
1406 1555 1.141449 CAGCCAAGCGGAGAGAGAG 59.859 63.158 0.00 0.00 0.00 3.20
1412 1561 3.052082 CACACCAGCCAAGCGGAG 61.052 66.667 4.82 0.43 0.00 4.63
1423 1572 0.678366 GAACACCACACCACACACCA 60.678 55.000 0.00 0.00 0.00 4.17
1424 1573 1.381165 GGAACACCACACCACACACC 61.381 60.000 0.00 0.00 0.00 4.16
1425 1574 1.381165 GGGAACACCACACCACACAC 61.381 60.000 0.00 0.00 39.85 3.82
1426 1575 1.077357 GGGAACACCACACCACACA 60.077 57.895 0.00 0.00 39.85 3.72
1427 1576 2.184167 CGGGAACACCACACCACAC 61.184 63.158 0.00 0.00 40.22 3.82
1428 1577 2.190843 CGGGAACACCACACCACA 59.809 61.111 0.00 0.00 40.22 4.17
1429 1578 2.406002 ATCCGGGAACACCACACCAC 62.406 60.000 0.00 0.00 40.22 4.16
1461 1610 4.668118 GACACGAACGGCCGGGAA 62.668 66.667 31.76 0.00 36.28 3.97
1471 1620 2.611971 GGCAACACCTATCTGACACGAA 60.612 50.000 0.00 0.00 34.51 3.85
1473 1622 1.359848 GGCAACACCTATCTGACACG 58.640 55.000 0.00 0.00 34.51 4.49
1501 1652 2.489722 GGTGCCATTGAAGAGAGGAAAC 59.510 50.000 0.00 0.00 0.00 2.78
1626 1788 3.869065 TGACCGGACAATATCTCAAACC 58.131 45.455 9.46 0.00 0.00 3.27
1633 1795 3.111853 TGAGCATGACCGGACAATATC 57.888 47.619 9.46 8.53 0.00 1.63
1636 1798 1.671979 CATGAGCATGACCGGACAAT 58.328 50.000 9.46 0.00 41.20 2.71
1639 1801 1.153289 AGCATGAGCATGACCGGAC 60.153 57.895 9.46 1.07 45.49 4.79
1643 1805 0.381089 GCTTGAGCATGAGCATGACC 59.619 55.000 14.27 5.35 45.49 4.02
1644 1806 1.064208 CAGCTTGAGCATGAGCATGAC 59.936 52.381 14.27 7.66 45.49 3.06
1645 1807 1.065709 TCAGCTTGAGCATGAGCATGA 60.066 47.619 14.27 0.00 45.49 3.07
1646 1808 1.379527 TCAGCTTGAGCATGAGCATG 58.620 50.000 5.70 6.11 45.49 4.06
1647 1809 2.124277 TTCAGCTTGAGCATGAGCAT 57.876 45.000 5.70 0.00 45.49 3.79
1649 1811 3.505464 AATTTCAGCTTGAGCATGAGC 57.495 42.857 5.70 0.00 45.16 4.26
1650 1812 6.373186 TCATAATTTCAGCTTGAGCATGAG 57.627 37.500 5.70 0.00 45.16 2.90
1651 1813 6.544564 TCATCATAATTTCAGCTTGAGCATGA 59.455 34.615 5.70 4.36 45.16 3.07
1652 1814 6.735130 TCATCATAATTTCAGCTTGAGCATG 58.265 36.000 5.70 1.50 45.16 4.06
1653 1815 6.954487 TCATCATAATTTCAGCTTGAGCAT 57.046 33.333 5.70 0.00 45.16 3.79
1669 1831 0.109153 AAGGCGCCTGCATCATCATA 59.891 50.000 33.60 0.00 45.35 2.15
1686 1852 2.436646 ACCGCCATCGCCAAGAAG 60.437 61.111 0.00 0.00 0.00 2.85
1695 1861 2.825836 CTTCCCAGCACCGCCATC 60.826 66.667 0.00 0.00 0.00 3.51
1701 1867 1.077429 GTCCATCCTTCCCAGCACC 60.077 63.158 0.00 0.00 0.00 5.01
1822 1988 6.538945 AAAATTGGTGTTGACTTGTAAGGT 57.461 33.333 0.00 0.00 0.00 3.50
1976 2155 3.367646 TCTACCAACTCTCGGAGATGT 57.632 47.619 8.39 6.26 31.83 3.06
1982 2161 7.982761 ATACTACTATTCTACCAACTCTCGG 57.017 40.000 0.00 0.00 0.00 4.63
2003 2190 8.570096 TGTGCATTCTGTAGTTACGAATATAC 57.430 34.615 0.00 9.70 32.46 1.47
2026 2213 3.118408 TGTTGAGTTACAGCCACTCTTGT 60.118 43.478 2.00 0.00 41.25 3.16
2101 2289 8.854117 GGATGGAGCACTTGAAGAATATTAATT 58.146 33.333 0.00 0.00 0.00 1.40
2114 2302 2.877168 GAGCTTATGGATGGAGCACTTG 59.123 50.000 0.00 0.00 38.85 3.16
2135 2323 2.942376 TGCTTGATACCAACCGCTTATG 59.058 45.455 0.00 0.00 0.00 1.90
2165 2354 8.958119 TTGAACAAAGTTCATAGTGTTCTAGT 57.042 30.769 12.75 0.00 46.43 2.57
2233 2432 9.826574 AATTTCAGGAATCATCACAATTTATGG 57.173 29.630 0.00 0.00 0.00 2.74
2262 2461 8.984855 AGTATAACATGGCCTTTTACTACACTA 58.015 33.333 3.32 0.00 0.00 2.74
2343 2542 3.243839 TGCAAGAATTTCCACCTGAAAGC 60.244 43.478 0.00 0.00 45.74 3.51
2346 2545 3.831323 TCTGCAAGAATTTCCACCTGAA 58.169 40.909 0.00 0.00 42.31 3.02
2382 2581 1.089920 GCACAACCAATCTGAGCGAT 58.910 50.000 0.00 0.00 0.00 4.58
2589 2818 8.019094 GCTCAAAATATTTCTTTGCTGCATTTT 58.981 29.630 1.84 1.75 35.27 1.82
2612 2841 7.466590 GCAGTTATCATAAAAAGAGGTGAGCTC 60.467 40.741 6.82 6.82 0.00 4.09
2687 2916 6.640907 GGAAAAGTGCATACCAAAGTTGTAAG 59.359 38.462 0.00 0.00 0.00 2.34
2811 3043 4.215109 AGTGCAGTAAAAGGGTCAATGTT 58.785 39.130 0.00 0.00 0.00 2.71
2939 3171 3.871594 GCTTCGTCAACTTATGTATGCCT 59.128 43.478 0.00 0.00 0.00 4.75
2951 3183 1.082104 CAAAGGCCGCTTCGTCAAC 60.082 57.895 0.00 0.00 0.00 3.18
2961 3193 1.533625 TCAACTTCATCCAAAGGCCG 58.466 50.000 0.00 0.00 0.00 6.13
3111 3343 3.049912 TCGAAATATCACGCTCCATTCG 58.950 45.455 0.00 0.00 39.43 3.34
3120 3352 6.475727 AGGTATTTCTGTGTCGAAATATCACG 59.524 38.462 15.09 0.00 44.06 4.35
3151 3383 9.797642 TGTATTGCATGAAGAATACTATTGGAT 57.202 29.630 16.99 0.00 36.43 3.41
3178 3411 2.818350 GCCATTTGCAGTCACAAGC 58.182 52.632 0.00 0.00 40.77 4.01
3183 3416 8.382364 ATGTTTTACATTTGCCATTTGCAGTCA 61.382 33.333 0.00 0.00 39.64 3.41
3200 3433 6.983307 CCAGATGTTGTTGGAAATGTTTTACA 59.017 34.615 0.00 0.00 36.55 2.41
3201 3434 6.983890 ACCAGATGTTGTTGGAAATGTTTTAC 59.016 34.615 0.00 0.00 37.89 2.01
3213 3446 7.819644 TCATTTCAGATTACCAGATGTTGTTG 58.180 34.615 0.00 0.00 0.00 3.33
3216 3449 9.695526 TTTTTCATTTCAGATTACCAGATGTTG 57.304 29.630 0.00 0.00 0.00 3.33
3254 3487 4.012374 CAACTGCTACCATGGTTCAGAAT 58.988 43.478 34.64 25.14 34.21 2.40
3260 3493 1.820519 CATGCAACTGCTACCATGGTT 59.179 47.619 25.38 7.42 42.66 3.67
3319 3552 7.339466 ACCTTTTCAGTTGTTAATCAGAGTTGT 59.661 33.333 0.00 0.00 0.00 3.32
3322 3555 8.974060 TTACCTTTTCAGTTGTTAATCAGAGT 57.026 30.769 0.00 0.00 0.00 3.24
3336 3569 8.166422 ACTGGATACACTTTTTACCTTTTCAG 57.834 34.615 0.00 0.00 46.17 3.02
3358 3591 6.928348 TGGTCCCACCTGTATATATTACTG 57.072 41.667 0.00 0.00 39.58 2.74
3362 3595 7.147479 GCATCTATGGTCCCACCTGTATATATT 60.147 40.741 0.00 0.00 39.58 1.28
3365 3598 4.471386 GCATCTATGGTCCCACCTGTATAT 59.529 45.833 0.00 0.00 39.58 0.86
3373 3606 3.678056 TTATCGCATCTATGGTCCCAC 57.322 47.619 0.00 0.00 0.00 4.61
3376 3609 7.849804 ACATATTTTATCGCATCTATGGTCC 57.150 36.000 0.00 0.00 0.00 4.46
3406 3639 7.606135 TTATCCCATTTCTATACGTCTCCAA 57.394 36.000 0.00 0.00 0.00 3.53
3445 3678 3.469564 ACTGAAGTGACCGTTTGCA 57.530 47.368 0.00 0.00 0.00 4.08
3473 3718 4.020218 TCCAAGTTGGTAGTTCAGGATGAG 60.020 45.833 21.35 0.00 42.54 2.90
3505 3784 7.549615 TCTTGAGATTTGCATAGTCTGATTG 57.450 36.000 0.00 0.00 0.00 2.67
3521 3800 9.620259 GATAACTGGATACCTTTTTCTTGAGAT 57.380 33.333 0.00 0.00 0.00 2.75
3591 3873 8.204836 GTCTATGGGAACTTATCTGCTAAAAGA 58.795 37.037 0.00 0.00 0.00 2.52
3780 4062 6.016777 ACAGTTTCTTCAATTGTGAGGATGTC 60.017 38.462 5.13 0.00 39.41 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.