Multiple sequence alignment - TraesCS4A01G286500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G286500 chr4A 100.000 4572 0 0 1 4572 591873904 591878475 0.000000e+00 8444
1 TraesCS4A01G286500 chr4B 94.777 3791 130 27 822 4572 20743734 20747496 0.000000e+00 5842
2 TraesCS4A01G286500 chr4D 93.775 3743 168 20 851 4572 10988016 10991714 0.000000e+00 5561
3 TraesCS4A01G286500 chr4D 86.940 268 13 7 1 249 10987296 10987560 9.680000e-72 281
4 TraesCS4A01G286500 chr4D 93.976 166 7 3 523 685 416425070 416425235 9.820000e-62 248
5 TraesCS4A01G286500 chr1B 96.653 478 16 0 2629 3106 252980368 252979891 0.000000e+00 795
6 TraesCS4A01G286500 chr5A 95.238 168 6 1 523 688 18658751 18658584 9.750000e-67 265
7 TraesCS4A01G286500 chr5A 94.578 166 7 1 523 686 495925367 495925202 5.870000e-64 255
8 TraesCS4A01G286500 chr1A 94.578 166 7 1 523 686 44363249 44363414 5.870000e-64 255
9 TraesCS4A01G286500 chr1A 93.939 165 8 1 523 685 483658556 483658720 9.820000e-62 248
10 TraesCS4A01G286500 chr7D 93.103 174 10 2 523 696 184167574 184167403 2.110000e-63 254
11 TraesCS4A01G286500 chr2A 94.545 165 7 1 523 685 629108586 629108422 2.110000e-63 254
12 TraesCS4A01G286500 chr3A 93.023 172 9 2 523 691 68866506 68866677 9.820000e-62 248
13 TraesCS4A01G286500 chrUn 91.954 174 13 1 523 695 388800548 388800375 4.570000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G286500 chr4A 591873904 591878475 4571 False 8444 8444 100.0000 1 4572 1 chr4A.!!$F1 4571
1 TraesCS4A01G286500 chr4B 20743734 20747496 3762 False 5842 5842 94.7770 822 4572 1 chr4B.!!$F1 3750
2 TraesCS4A01G286500 chr4D 10987296 10991714 4418 False 2921 5561 90.3575 1 4572 2 chr4D.!!$F2 4571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 579 0.098728 GTGCGAGCTCTCTCTGACTC 59.901 60.0 12.85 0.0 37.19 3.36 F
724 789 0.179134 CGCGTTTCCCTCTCGAATCT 60.179 55.0 0.00 0.0 0.00 2.40 F
2443 2511 0.034059 CGGATGGTGATAGAGTGCCC 59.966 60.0 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2424 2492 0.034059 GGGCACTCTATCACCATCCG 59.966 60.0 0.0 0.0 0.0 4.18 R
2599 2667 2.283145 AGAACTGCTGCTTTCCATGT 57.717 45.0 0.0 0.0 0.0 3.21 R
4159 4277 0.034337 TAAGTTGACGAAGCGGCCTT 59.966 50.0 0.0 0.0 31.6 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.399833 TGTGCTGGTGGATGCTTACA 59.600 50.000 0.00 0.00 0.00 2.41
55 56 0.804989 GTGCTGGTGGATGCTTACAC 59.195 55.000 6.40 6.40 36.89 2.90
81 82 4.530553 ACCAACTTGGGAGAAAGTGTTTTT 59.469 37.500 12.62 0.00 43.37 1.94
85 86 4.402474 ACTTGGGAGAAAGTGTTTTTCTGG 59.598 41.667 6.87 0.00 38.95 3.86
86 87 4.243793 TGGGAGAAAGTGTTTTTCTGGA 57.756 40.909 6.87 0.00 38.73 3.86
87 88 4.803452 TGGGAGAAAGTGTTTTTCTGGAT 58.197 39.130 6.87 0.00 38.73 3.41
88 89 5.947663 TGGGAGAAAGTGTTTTTCTGGATA 58.052 37.500 6.87 0.00 38.73 2.59
89 90 5.768164 TGGGAGAAAGTGTTTTTCTGGATAC 59.232 40.000 6.87 0.00 38.73 2.24
90 91 6.004574 GGGAGAAAGTGTTTTTCTGGATACT 58.995 40.000 6.87 0.00 38.73 2.12
91 92 6.072452 GGGAGAAAGTGTTTTTCTGGATACTG 60.072 42.308 6.87 0.00 38.73 2.74
92 93 6.710744 GGAGAAAGTGTTTTTCTGGATACTGA 59.289 38.462 6.87 0.00 43.48 3.41
93 94 7.391833 GGAGAAAGTGTTTTTCTGGATACTGAT 59.608 37.037 6.87 0.00 44.63 2.90
94 95 9.436957 GAGAAAGTGTTTTTCTGGATACTGATA 57.563 33.333 6.87 0.00 44.63 2.15
95 96 9.220767 AGAAAGTGTTTTTCTGGATACTGATAC 57.779 33.333 1.64 0.00 44.63 2.24
108 109 1.828595 ACTGATACACACGCCATACCA 59.171 47.619 0.00 0.00 0.00 3.25
129 130 4.219288 CCAAGGAGCAAGTATTTTTCTGCT 59.781 41.667 0.00 0.00 35.13 4.24
146 147 2.421424 CTGCTACTTTGCTGGGAATGTC 59.579 50.000 0.00 0.00 0.00 3.06
148 149 3.019564 GCTACTTTGCTGGGAATGTCAT 58.980 45.455 0.00 0.00 0.00 3.06
169 170 2.774234 TCCCCTTATTGAGCTGAGAAGG 59.226 50.000 11.43 11.43 37.09 3.46
175 176 5.711976 CCTTATTGAGCTGAGAAGGGAAAAA 59.288 40.000 10.78 0.00 34.26 1.94
252 300 4.098501 CCAGAATCCATTTTTGCTCCTACC 59.901 45.833 0.00 0.00 0.00 3.18
259 307 0.394938 TTTTGCTCCTACCGTGCTCA 59.605 50.000 0.00 0.00 32.04 4.26
274 322 1.340889 TGCTCATGGTTGCTGTTTTCC 59.659 47.619 0.00 0.00 0.00 3.13
275 323 1.615392 GCTCATGGTTGCTGTTTTCCT 59.385 47.619 0.00 0.00 0.00 3.36
276 324 2.608752 GCTCATGGTTGCTGTTTTCCTG 60.609 50.000 0.00 0.00 0.00 3.86
277 325 1.340889 TCATGGTTGCTGTTTTCCTGC 59.659 47.619 0.00 0.00 38.42 4.85
278 326 0.681175 ATGGTTGCTGTTTTCCTGCC 59.319 50.000 0.00 0.00 37.22 4.85
279 327 1.367471 GGTTGCTGTTTTCCTGCCC 59.633 57.895 0.00 0.00 37.22 5.36
280 328 1.398958 GGTTGCTGTTTTCCTGCCCA 61.399 55.000 0.00 0.00 37.22 5.36
281 329 0.681175 GTTGCTGTTTTCCTGCCCAT 59.319 50.000 0.00 0.00 37.22 4.00
282 330 0.680618 TTGCTGTTTTCCTGCCCATG 59.319 50.000 0.00 0.00 37.22 3.66
283 331 0.469705 TGCTGTTTTCCTGCCCATGT 60.470 50.000 0.00 0.00 37.22 3.21
289 337 3.198635 TGTTTTCCTGCCCATGTTTTTCA 59.801 39.130 0.00 0.00 0.00 2.69
291 339 2.673775 TCCTGCCCATGTTTTTCAGA 57.326 45.000 0.00 0.00 0.00 3.27
301 349 8.156165 TGCCCATGTTTTTCAGAATCTATTTTT 58.844 29.630 0.00 0.00 0.00 1.94
303 351 9.154847 CCCATGTTTTTCAGAATCTATTTTTCC 57.845 33.333 0.00 0.00 0.00 3.13
323 371 1.597663 CTATCATCCAAAACCCGCGAC 59.402 52.381 8.23 0.00 0.00 5.19
325 373 0.953471 TCATCCAAAACCCGCGACAG 60.953 55.000 8.23 0.00 0.00 3.51
337 387 1.519234 GCGACAGCGGTGATGATGA 60.519 57.895 23.44 0.00 38.16 2.92
338 388 1.756375 GCGACAGCGGTGATGATGAC 61.756 60.000 23.44 0.00 38.16 3.06
342 392 0.376152 CAGCGGTGATGATGACAAGC 59.624 55.000 9.50 0.00 0.00 4.01
355 405 4.511454 TGATGACAAGCACTTCTGTTGTAC 59.489 41.667 0.00 0.00 34.55 2.90
357 407 4.513442 TGACAAGCACTTCTGTTGTACTT 58.487 39.130 0.00 0.00 34.55 2.24
358 408 5.666462 TGACAAGCACTTCTGTTGTACTTA 58.334 37.500 0.00 0.00 34.55 2.24
361 411 5.753921 ACAAGCACTTCTGTTGTACTTACTC 59.246 40.000 0.00 0.00 32.63 2.59
362 412 5.793030 AGCACTTCTGTTGTACTTACTCT 57.207 39.130 0.00 0.00 0.00 3.24
363 413 5.774630 AGCACTTCTGTTGTACTTACTCTC 58.225 41.667 0.00 0.00 0.00 3.20
364 414 5.536916 AGCACTTCTGTTGTACTTACTCTCT 59.463 40.000 0.00 0.00 0.00 3.10
365 415 6.041069 AGCACTTCTGTTGTACTTACTCTCTT 59.959 38.462 0.00 0.00 0.00 2.85
366 416 6.363896 GCACTTCTGTTGTACTTACTCTCTTC 59.636 42.308 0.00 0.00 0.00 2.87
367 417 6.579292 CACTTCTGTTGTACTTACTCTCTTCG 59.421 42.308 0.00 0.00 0.00 3.79
369 419 4.082895 TCTGTTGTACTTACTCTCTTCGCC 60.083 45.833 0.00 0.00 0.00 5.54
370 420 3.169733 GTTGTACTTACTCTCTTCGCCG 58.830 50.000 0.00 0.00 0.00 6.46
371 421 1.131883 TGTACTTACTCTCTTCGCCGC 59.868 52.381 0.00 0.00 0.00 6.53
372 422 1.131883 GTACTTACTCTCTTCGCCGCA 59.868 52.381 0.00 0.00 0.00 5.69
373 423 0.601558 ACTTACTCTCTTCGCCGCAA 59.398 50.000 0.00 0.00 0.00 4.85
374 424 1.000506 ACTTACTCTCTTCGCCGCAAA 59.999 47.619 0.00 0.00 0.00 3.68
375 425 2.066262 CTTACTCTCTTCGCCGCAAAA 58.934 47.619 0.00 0.00 0.00 2.44
377 427 0.798776 ACTCTCTTCGCCGCAAAATG 59.201 50.000 0.00 0.00 0.00 2.32
378 428 0.798776 CTCTCTTCGCCGCAAAATGT 59.201 50.000 0.00 0.00 0.00 2.71
380 430 2.609459 CTCTCTTCGCCGCAAAATGTAT 59.391 45.455 0.00 0.00 0.00 2.29
381 431 2.351418 TCTCTTCGCCGCAAAATGTATG 59.649 45.455 0.00 0.00 0.00 2.39
384 434 1.013596 TCGCCGCAAAATGTATGGAG 58.986 50.000 0.00 0.00 0.00 3.86
385 435 0.732571 CGCCGCAAAATGTATGGAGT 59.267 50.000 0.00 0.00 0.00 3.85
386 436 1.268032 CGCCGCAAAATGTATGGAGTC 60.268 52.381 0.00 0.00 0.00 3.36
388 438 2.423538 GCCGCAAAATGTATGGAGTCTT 59.576 45.455 0.00 0.00 0.00 3.01
389 439 3.119495 GCCGCAAAATGTATGGAGTCTTT 60.119 43.478 0.00 0.00 0.00 2.52
390 440 4.095782 GCCGCAAAATGTATGGAGTCTTTA 59.904 41.667 0.00 0.00 0.00 1.85
391 441 5.730568 GCCGCAAAATGTATGGAGTCTTTAG 60.731 44.000 0.00 0.00 0.00 1.85
392 442 5.266242 CGCAAAATGTATGGAGTCTTTAGC 58.734 41.667 0.00 0.00 0.00 3.09
393 443 5.065218 CGCAAAATGTATGGAGTCTTTAGCT 59.935 40.000 0.00 0.00 0.00 3.32
394 444 6.261118 GCAAAATGTATGGAGTCTTTAGCTG 58.739 40.000 0.00 0.00 0.00 4.24
395 445 6.094048 GCAAAATGTATGGAGTCTTTAGCTGA 59.906 38.462 0.00 0.00 0.00 4.26
396 446 7.201767 GCAAAATGTATGGAGTCTTTAGCTGAT 60.202 37.037 0.00 0.00 0.00 2.90
397 447 9.330063 CAAAATGTATGGAGTCTTTAGCTGATA 57.670 33.333 0.00 0.00 0.00 2.15
398 448 9.905713 AAAATGTATGGAGTCTTTAGCTGATAA 57.094 29.630 0.00 0.00 0.00 1.75
470 535 9.734620 TTTTGAAAGTGAATCTAGTGACAATTG 57.265 29.630 3.24 3.24 0.00 2.32
471 536 8.450578 TTGAAAGTGAATCTAGTGACAATTGT 57.549 30.769 11.78 11.78 0.00 2.71
472 537 7.864686 TGAAAGTGAATCTAGTGACAATTGTG 58.135 34.615 17.58 0.64 0.00 3.33
473 538 7.714813 TGAAAGTGAATCTAGTGACAATTGTGA 59.285 33.333 17.58 4.23 0.00 3.58
474 539 8.450578 AAAGTGAATCTAGTGACAATTGTGAA 57.549 30.769 17.58 0.56 0.00 3.18
475 540 7.426929 AGTGAATCTAGTGACAATTGTGAAC 57.573 36.000 17.58 13.83 0.00 3.18
476 541 6.992123 AGTGAATCTAGTGACAATTGTGAACA 59.008 34.615 17.58 4.98 0.00 3.18
477 542 7.041780 AGTGAATCTAGTGACAATTGTGAACAC 60.042 37.037 17.58 17.22 36.56 3.32
478 543 6.204688 TGAATCTAGTGACAATTGTGAACACC 59.795 38.462 17.58 0.32 36.78 4.16
479 544 5.029807 TCTAGTGACAATTGTGAACACCA 57.970 39.130 17.58 6.35 36.78 4.17
480 545 5.620206 TCTAGTGACAATTGTGAACACCAT 58.380 37.500 17.58 5.94 36.78 3.55
481 546 6.061441 TCTAGTGACAATTGTGAACACCATT 58.939 36.000 17.58 5.92 36.78 3.16
482 547 4.935702 AGTGACAATTGTGAACACCATTG 58.064 39.130 17.58 21.67 44.93 2.82
483 548 4.644234 AGTGACAATTGTGAACACCATTGA 59.356 37.500 26.71 11.49 43.24 2.57
484 549 5.302568 AGTGACAATTGTGAACACCATTGAT 59.697 36.000 26.71 16.39 43.24 2.57
485 550 5.984926 GTGACAATTGTGAACACCATTGATT 59.015 36.000 26.71 13.31 43.24 2.57
486 551 6.479660 GTGACAATTGTGAACACCATTGATTT 59.520 34.615 26.71 12.79 43.24 2.17
487 552 7.011295 GTGACAATTGTGAACACCATTGATTTT 59.989 33.333 26.71 12.53 43.24 1.82
488 553 7.011202 TGACAATTGTGAACACCATTGATTTTG 59.989 33.333 26.71 10.57 43.24 2.44
489 554 6.822676 ACAATTGTGAACACCATTGATTTTGT 59.177 30.769 26.71 11.04 43.24 2.83
490 555 6.847956 ATTGTGAACACCATTGATTTTGTG 57.152 33.333 2.46 0.00 34.92 3.33
491 556 5.588958 TGTGAACACCATTGATTTTGTGA 57.411 34.783 2.46 0.00 33.08 3.58
492 557 5.970592 TGTGAACACCATTGATTTTGTGAA 58.029 33.333 2.46 0.00 33.08 3.18
493 558 6.580788 TGTGAACACCATTGATTTTGTGAAT 58.419 32.000 2.46 0.00 33.08 2.57
494 559 7.720442 TGTGAACACCATTGATTTTGTGAATA 58.280 30.769 2.46 0.00 33.08 1.75
495 560 7.866898 TGTGAACACCATTGATTTTGTGAATAG 59.133 33.333 2.46 0.00 33.08 1.73
496 561 7.867403 GTGAACACCATTGATTTTGTGAATAGT 59.133 33.333 0.00 0.00 33.08 2.12
497 562 7.866898 TGAACACCATTGATTTTGTGAATAGTG 59.133 33.333 0.00 0.00 31.51 2.74
498 563 6.158598 ACACCATTGATTTTGTGAATAGTGC 58.841 36.000 0.00 0.00 29.05 4.40
499 564 5.286797 CACCATTGATTTTGTGAATAGTGCG 59.713 40.000 0.00 0.00 0.00 5.34
500 565 5.182950 ACCATTGATTTTGTGAATAGTGCGA 59.817 36.000 0.00 0.00 0.00 5.10
501 566 5.740569 CCATTGATTTTGTGAATAGTGCGAG 59.259 40.000 0.00 0.00 0.00 5.03
502 567 4.340894 TGATTTTGTGAATAGTGCGAGC 57.659 40.909 0.00 0.00 0.00 5.03
503 568 4.002982 TGATTTTGTGAATAGTGCGAGCT 58.997 39.130 0.00 0.00 0.00 4.09
504 569 4.093408 TGATTTTGTGAATAGTGCGAGCTC 59.907 41.667 2.73 2.73 0.00 4.09
505 570 3.319137 TTTGTGAATAGTGCGAGCTCT 57.681 42.857 12.85 5.02 0.00 4.09
506 571 2.568696 TGTGAATAGTGCGAGCTCTC 57.431 50.000 12.85 4.04 0.00 3.20
507 572 2.095461 TGTGAATAGTGCGAGCTCTCT 58.905 47.619 12.85 9.79 0.00 3.10
508 573 2.098280 TGTGAATAGTGCGAGCTCTCTC 59.902 50.000 12.85 4.78 35.99 3.20
509 574 2.357637 GTGAATAGTGCGAGCTCTCTCT 59.642 50.000 12.85 12.64 37.19 3.10
510 575 2.357323 TGAATAGTGCGAGCTCTCTCTG 59.643 50.000 16.49 0.14 37.19 3.35
511 576 2.340210 ATAGTGCGAGCTCTCTCTGA 57.660 50.000 16.49 3.79 37.19 3.27
512 577 1.374560 TAGTGCGAGCTCTCTCTGAC 58.625 55.000 16.49 1.65 37.19 3.51
513 578 0.322456 AGTGCGAGCTCTCTCTGACT 60.322 55.000 12.85 0.10 37.19 3.41
514 579 0.098728 GTGCGAGCTCTCTCTGACTC 59.901 60.000 12.85 0.00 37.19 3.36
518 583 1.014352 GAGCTCTCTCTGACTCGACC 58.986 60.000 6.43 0.00 36.42 4.79
519 584 0.618458 AGCTCTCTCTGACTCGACCT 59.382 55.000 0.00 0.00 0.00 3.85
520 585 1.014352 GCTCTCTCTGACTCGACCTC 58.986 60.000 0.00 0.00 0.00 3.85
521 586 1.663695 CTCTCTCTGACTCGACCTCC 58.336 60.000 0.00 0.00 0.00 4.30
522 587 0.253610 TCTCTCTGACTCGACCTCCC 59.746 60.000 0.00 0.00 0.00 4.30
523 588 0.254747 CTCTCTGACTCGACCTCCCT 59.745 60.000 0.00 0.00 0.00 4.20
524 589 1.487142 CTCTCTGACTCGACCTCCCTA 59.513 57.143 0.00 0.00 0.00 3.53
525 590 1.487142 TCTCTGACTCGACCTCCCTAG 59.513 57.143 0.00 0.00 0.00 3.02
526 591 1.487142 CTCTGACTCGACCTCCCTAGA 59.513 57.143 0.00 0.00 0.00 2.43
527 592 2.105821 CTCTGACTCGACCTCCCTAGAT 59.894 54.545 0.00 0.00 0.00 1.98
528 593 2.158740 TCTGACTCGACCTCCCTAGATG 60.159 54.545 0.00 0.00 0.00 2.90
529 594 1.564818 TGACTCGACCTCCCTAGATGT 59.435 52.381 0.00 0.00 0.00 3.06
530 595 1.950909 GACTCGACCTCCCTAGATGTG 59.049 57.143 0.00 0.00 0.00 3.21
531 596 0.671251 CTCGACCTCCCTAGATGTGC 59.329 60.000 0.00 0.00 0.00 4.57
532 597 0.755698 TCGACCTCCCTAGATGTGCC 60.756 60.000 0.00 0.00 0.00 5.01
533 598 1.043116 CGACCTCCCTAGATGTGCCA 61.043 60.000 0.00 0.00 0.00 4.92
534 599 1.428869 GACCTCCCTAGATGTGCCAT 58.571 55.000 0.00 0.00 0.00 4.40
535 600 2.609747 GACCTCCCTAGATGTGCCATA 58.390 52.381 0.00 0.00 0.00 2.74
536 601 2.300437 GACCTCCCTAGATGTGCCATAC 59.700 54.545 0.00 0.00 0.00 2.39
537 602 2.090494 ACCTCCCTAGATGTGCCATACT 60.090 50.000 0.00 0.00 0.00 2.12
538 603 2.975489 CCTCCCTAGATGTGCCATACTT 59.025 50.000 0.00 0.00 0.00 2.24
539 604 4.160329 CCTCCCTAGATGTGCCATACTTA 58.840 47.826 0.00 0.00 0.00 2.24
540 605 4.780021 CCTCCCTAGATGTGCCATACTTAT 59.220 45.833 0.00 0.00 0.00 1.73
541 606 5.249393 CCTCCCTAGATGTGCCATACTTATT 59.751 44.000 0.00 0.00 0.00 1.40
542 607 6.114187 TCCCTAGATGTGCCATACTTATTG 57.886 41.667 0.00 0.00 0.00 1.90
543 608 4.697352 CCCTAGATGTGCCATACTTATTGC 59.303 45.833 0.00 0.00 0.00 3.56
544 609 5.308014 CCTAGATGTGCCATACTTATTGCA 58.692 41.667 0.00 0.00 32.69 4.08
545 610 5.942236 CCTAGATGTGCCATACTTATTGCAT 59.058 40.000 0.00 0.00 36.83 3.96
546 611 7.105588 CCTAGATGTGCCATACTTATTGCATA 58.894 38.462 0.00 0.00 36.83 3.14
547 612 7.772292 CCTAGATGTGCCATACTTATTGCATAT 59.228 37.037 4.77 4.77 38.33 1.78
548 613 7.621428 AGATGTGCCATACTTATTGCATATC 57.379 36.000 17.41 17.41 45.14 1.63
549 614 7.621428 GATGTGCCATACTTATTGCATATCT 57.379 36.000 17.65 0.00 43.34 1.98
550 615 8.722480 GATGTGCCATACTTATTGCATATCTA 57.278 34.615 17.65 0.09 43.34 1.98
551 616 9.166173 GATGTGCCATACTTATTGCATATCTAA 57.834 33.333 17.65 0.00 43.34 2.10
552 617 9.690913 ATGTGCCATACTTATTGCATATCTAAT 57.309 29.630 0.00 0.00 36.83 1.73
553 618 9.519191 TGTGCCATACTTATTGCATATCTAATT 57.481 29.630 0.00 0.00 36.83 1.40
554 619 9.778993 GTGCCATACTTATTGCATATCTAATTG 57.221 33.333 0.00 0.00 36.83 2.32
555 620 9.737844 TGCCATACTTATTGCATATCTAATTGA 57.262 29.630 0.00 0.00 30.49 2.57
567 632 9.341078 TGCATATCTAATTGAGTGAATTAAGCA 57.659 29.630 0.00 0.00 36.32 3.91
575 640 8.767478 AATTGAGTGAATTAAGCATGAAAAGG 57.233 30.769 0.00 0.00 32.10 3.11
576 641 7.523293 TTGAGTGAATTAAGCATGAAAAGGA 57.477 32.000 0.00 0.00 0.00 3.36
577 642 7.523293 TGAGTGAATTAAGCATGAAAAGGAA 57.477 32.000 0.00 0.00 0.00 3.36
578 643 7.950512 TGAGTGAATTAAGCATGAAAAGGAAA 58.049 30.769 0.00 0.00 0.00 3.13
579 644 8.420222 TGAGTGAATTAAGCATGAAAAGGAAAA 58.580 29.630 0.00 0.00 0.00 2.29
580 645 8.822652 AGTGAATTAAGCATGAAAAGGAAAAG 57.177 30.769 0.00 0.00 0.00 2.27
581 646 8.641541 AGTGAATTAAGCATGAAAAGGAAAAGA 58.358 29.630 0.00 0.00 0.00 2.52
615 680 5.818136 AAATATCCACACCAATCTCAACG 57.182 39.130 0.00 0.00 0.00 4.10
616 681 2.859165 ATCCACACCAATCTCAACGT 57.141 45.000 0.00 0.00 0.00 3.99
617 682 3.973206 ATCCACACCAATCTCAACGTA 57.027 42.857 0.00 0.00 0.00 3.57
618 683 3.755112 TCCACACCAATCTCAACGTAA 57.245 42.857 0.00 0.00 0.00 3.18
621 686 4.020573 TCCACACCAATCTCAACGTAAGAT 60.021 41.667 7.39 7.39 43.62 2.40
622 687 4.330074 CCACACCAATCTCAACGTAAGATC 59.670 45.833 12.34 0.00 43.62 2.75
625 690 6.092670 CACACCAATCTCAACGTAAGATCAAT 59.907 38.462 12.34 0.00 43.62 2.57
626 691 6.092670 ACACCAATCTCAACGTAAGATCAATG 59.907 38.462 12.34 12.21 43.62 2.82
627 692 6.313658 CACCAATCTCAACGTAAGATCAATGA 59.686 38.462 12.34 0.00 43.62 2.57
628 693 7.011763 CACCAATCTCAACGTAAGATCAATGAT 59.988 37.037 12.34 0.00 43.62 2.45
630 695 9.212641 CCAATCTCAACGTAAGATCAATGATAT 57.787 33.333 12.34 0.00 43.62 1.63
635 700 9.347934 CTCAACGTAAGATCAATGATATAGGAC 57.652 37.037 12.27 2.81 43.62 3.85
636 701 9.078990 TCAACGTAAGATCAATGATATAGGACT 57.921 33.333 12.27 0.00 43.62 3.85
637 702 9.698309 CAACGTAAGATCAATGATATAGGACTT 57.302 33.333 12.27 6.56 43.62 3.01
645 710 9.311916 GATCAATGATATAGGACTTAGATGTGC 57.688 37.037 0.00 0.00 0.00 4.57
648 713 9.445878 CAATGATATAGGACTTAGATGTGCAAT 57.554 33.333 0.00 0.00 0.00 3.56
651 716 9.314133 TGATATAGGACTTAGATGTGCAATACT 57.686 33.333 0.00 0.00 0.00 2.12
655 720 9.935241 ATAGGACTTAGATGTGCAATACTTATG 57.065 33.333 0.00 0.00 0.00 1.90
656 721 7.220030 AGGACTTAGATGTGCAATACTTATGG 58.780 38.462 0.00 0.00 0.00 2.74
657 722 6.073003 GGACTTAGATGTGCAATACTTATGGC 60.073 42.308 0.00 0.00 33.16 4.40
658 723 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
706 771 8.609478 ACTGTTTTTAATACAAAGACAACACG 57.391 30.769 0.00 0.00 0.00 4.49
707 772 7.219344 ACTGTTTTTAATACAAAGACAACACGC 59.781 33.333 0.00 0.00 0.00 5.34
708 773 6.194876 TGTTTTTAATACAAAGACAACACGCG 59.805 34.615 3.53 3.53 0.00 6.01
709 774 5.406767 TTTAATACAAAGACAACACGCGT 57.593 34.783 5.58 5.58 0.00 6.01
710 775 3.955771 AATACAAAGACAACACGCGTT 57.044 38.095 10.22 0.00 35.01 4.84
711 776 3.955771 ATACAAAGACAACACGCGTTT 57.044 38.095 10.22 0.00 31.13 3.60
712 777 2.168201 ACAAAGACAACACGCGTTTC 57.832 45.000 10.22 3.66 31.13 2.78
713 778 1.202098 ACAAAGACAACACGCGTTTCC 60.202 47.619 10.22 0.00 31.13 3.13
714 779 0.379316 AAAGACAACACGCGTTTCCC 59.621 50.000 10.22 0.00 31.13 3.97
715 780 0.463116 AAGACAACACGCGTTTCCCT 60.463 50.000 10.22 0.00 31.13 4.20
716 781 0.878961 AGACAACACGCGTTTCCCTC 60.879 55.000 10.22 0.24 31.13 4.30
717 782 0.878961 GACAACACGCGTTTCCCTCT 60.879 55.000 10.22 0.00 31.13 3.69
718 783 0.878961 ACAACACGCGTTTCCCTCTC 60.879 55.000 10.22 0.00 31.13 3.20
719 784 1.663702 AACACGCGTTTCCCTCTCG 60.664 57.895 10.22 0.00 28.09 4.04
720 785 2.079020 AACACGCGTTTCCCTCTCGA 62.079 55.000 10.22 0.00 28.09 4.04
721 786 1.372499 CACGCGTTTCCCTCTCGAA 60.372 57.895 10.22 0.00 0.00 3.71
722 787 0.736325 CACGCGTTTCCCTCTCGAAT 60.736 55.000 10.22 0.00 0.00 3.34
723 788 0.458025 ACGCGTTTCCCTCTCGAATC 60.458 55.000 5.58 0.00 0.00 2.52
724 789 0.179134 CGCGTTTCCCTCTCGAATCT 60.179 55.000 0.00 0.00 0.00 2.40
725 790 1.562017 GCGTTTCCCTCTCGAATCTC 58.438 55.000 0.00 0.00 0.00 2.75
727 792 2.674177 GCGTTTCCCTCTCGAATCTCAA 60.674 50.000 0.00 0.00 0.00 3.02
729 794 3.553511 CGTTTCCCTCTCGAATCTCAATG 59.446 47.826 0.00 0.00 0.00 2.82
730 795 4.678044 CGTTTCCCTCTCGAATCTCAATGA 60.678 45.833 0.00 0.00 0.00 2.57
731 796 5.363939 GTTTCCCTCTCGAATCTCAATGAT 58.636 41.667 0.00 0.00 36.89 2.45
732 797 6.516718 GTTTCCCTCTCGAATCTCAATGATA 58.483 40.000 0.00 0.00 34.45 2.15
733 798 6.924913 TTCCCTCTCGAATCTCAATGATAT 57.075 37.500 0.00 0.00 34.45 1.63
736 801 6.268617 TCCCTCTCGAATCTCAATGATATGTT 59.731 38.462 0.00 0.00 34.45 2.71
737 802 6.589523 CCCTCTCGAATCTCAATGATATGTTC 59.410 42.308 0.00 0.00 34.45 3.18
738 803 7.377398 CCTCTCGAATCTCAATGATATGTTCT 58.623 38.462 0.00 0.00 34.45 3.01
739 804 7.541783 CCTCTCGAATCTCAATGATATGTTCTC 59.458 40.741 0.00 0.00 34.45 2.87
741 806 8.296000 TCTCGAATCTCAATGATATGTTCTCTC 58.704 37.037 0.00 0.00 34.45 3.20
742 807 7.945134 TCGAATCTCAATGATATGTTCTCTCA 58.055 34.615 0.00 0.00 34.45 3.27
747 812 9.676861 ATCTCAATGATATGTTCTCTCAAAACA 57.323 29.630 0.00 0.00 40.63 2.83
748 813 9.506018 TCTCAATGATATGTTCTCTCAAAACAA 57.494 29.630 0.00 0.00 39.84 2.83
907 974 2.644418 CCGTAACCGTCACGTCCA 59.356 61.111 0.00 0.00 37.71 4.02
909 976 1.283793 CGTAACCGTCACGTCCAGT 59.716 57.895 0.00 0.00 34.74 4.00
921 988 3.353836 TCCAGTTCCGCGCAAAGC 61.354 61.111 8.75 0.00 43.95 3.51
972 1039 2.488355 CGCGACACGTATCCACCT 59.512 61.111 0.00 0.00 36.87 4.00
974 1041 0.316772 CGCGACACGTATCCACCTAG 60.317 60.000 0.00 0.00 36.87 3.02
975 1042 0.737219 GCGACACGTATCCACCTAGT 59.263 55.000 0.00 0.00 0.00 2.57
976 1043 1.942657 GCGACACGTATCCACCTAGTA 59.057 52.381 0.00 0.00 0.00 1.82
977 1044 2.286654 GCGACACGTATCCACCTAGTAC 60.287 54.545 0.00 0.00 0.00 2.73
978 1045 3.201290 CGACACGTATCCACCTAGTACT 58.799 50.000 0.00 0.00 0.00 2.73
979 1046 4.371786 CGACACGTATCCACCTAGTACTA 58.628 47.826 1.89 1.89 0.00 1.82
980 1047 4.210120 CGACACGTATCCACCTAGTACTAC 59.790 50.000 0.00 0.00 0.00 2.73
981 1048 5.102953 ACACGTATCCACCTAGTACTACA 57.897 43.478 0.00 0.00 0.00 2.74
1002 1070 1.889105 CCATCTCCAACCGCCGATG 60.889 63.158 0.00 0.00 34.51 3.84
1003 1071 1.153369 CATCTCCAACCGCCGATGT 60.153 57.895 0.00 0.00 0.00 3.06
1004 1072 1.144057 ATCTCCAACCGCCGATGTC 59.856 57.895 0.00 0.00 0.00 3.06
1005 1073 2.629050 ATCTCCAACCGCCGATGTCG 62.629 60.000 0.00 0.00 39.44 4.35
1006 1074 3.642778 CTCCAACCGCCGATGTCGT 62.643 63.158 1.44 0.00 37.74 4.34
1007 1075 3.186047 CCAACCGCCGATGTCGTC 61.186 66.667 1.44 0.00 37.74 4.20
1579 1647 1.990799 TGACAACGACCATGATCGAC 58.009 50.000 18.44 5.21 45.13 4.20
1664 1732 0.321564 TCGAGACGAAGAACCCCGTA 60.322 55.000 0.00 0.00 39.30 4.02
1760 1828 3.021036 AGATGAGGAGTGGCATCTCTCC 61.021 54.545 13.32 13.32 45.99 3.71
1921 1989 3.753272 TGATGCCTGAAAGTAGCAAGAAC 59.247 43.478 0.00 0.00 40.46 3.01
1945 2013 0.248907 ATCTCCGGTTGTATCGTGCG 60.249 55.000 0.00 0.00 0.00 5.34
2424 2492 3.009143 AGTCAACTCTGGATTGGGGTAAC 59.991 47.826 0.00 0.00 0.00 2.50
2443 2511 0.034059 CGGATGGTGATAGAGTGCCC 59.966 60.000 0.00 0.00 0.00 5.36
2471 2539 2.709125 TTCAGTTCACCGCCTGACCG 62.709 60.000 0.00 0.00 37.43 4.79
2596 2664 1.202651 ACTGAGAAACGGGGTGACTTG 60.203 52.381 0.00 0.00 0.00 3.16
2599 2667 2.435069 TGAGAAACGGGGTGACTTGTTA 59.565 45.455 0.00 0.00 0.00 2.41
2603 2671 2.178912 ACGGGGTGACTTGTTACATG 57.821 50.000 0.00 0.00 0.00 3.21
2604 2672 1.271163 ACGGGGTGACTTGTTACATGG 60.271 52.381 0.00 0.00 0.00 3.66
2713 2781 0.396811 ACAGAACTTGGAAGGGACGG 59.603 55.000 0.00 0.00 0.00 4.79
2774 2842 1.528586 CTTGTCTTGGAACTCACTGCG 59.471 52.381 0.00 0.00 0.00 5.18
2944 3012 7.643123 AGATTGTGGTTATCTGGAATAAAGGT 58.357 34.615 0.00 0.00 31.32 3.50
2950 3018 0.177141 TCTGGAATAAAGGTCGCCCG 59.823 55.000 0.00 0.00 35.12 6.13
2974 3042 4.383649 CCAGTGCAAAATGAATTGAAGTCG 59.616 41.667 0.00 0.00 31.84 4.18
3346 3414 6.016777 ACAGTTTCTTCAATTGTGAGGATGTC 60.017 38.462 5.13 0.00 39.41 3.06
3535 3603 8.204836 GTCTATGGGAACTTATCTGCTAAAAGA 58.795 37.037 0.00 0.00 0.00 2.52
3605 3676 9.620259 GATAACTGGATACCTTTTTCTTGAGAT 57.380 33.333 0.00 0.00 0.00 2.75
3621 3692 7.549615 TCTTGAGATTTGCATAGTCTGATTG 57.450 36.000 0.00 0.00 0.00 2.67
3653 3758 4.020218 TCCAAGTTGGTAGTTCAGGATGAG 60.020 45.833 21.35 0.00 42.54 2.90
3681 3786 3.469564 ACTGAAGTGACCGTTTGCA 57.530 47.368 0.00 0.00 0.00 4.08
3720 3837 7.606135 TTATCCCATTTCTATACGTCTCCAA 57.394 36.000 0.00 0.00 0.00 3.53
3750 3867 7.849804 ACATATTTTATCGCATCTATGGTCC 57.150 36.000 0.00 0.00 0.00 4.46
3753 3870 3.678056 TTATCGCATCTATGGTCCCAC 57.322 47.619 0.00 0.00 0.00 4.61
3761 3878 4.471386 GCATCTATGGTCCCACCTGTATAT 59.529 45.833 0.00 0.00 39.58 0.86
3764 3881 7.147479 GCATCTATGGTCCCACCTGTATATATT 60.147 40.741 0.00 0.00 39.58 1.28
3768 3885 6.928348 TGGTCCCACCTGTATATATTACTG 57.072 41.667 0.00 0.00 39.58 2.74
3790 3907 8.166422 ACTGGATACACTTTTTACCTTTTCAG 57.834 34.615 0.00 0.00 46.17 3.02
3804 3921 8.974060 TTACCTTTTCAGTTGTTAATCAGAGT 57.026 30.769 0.00 0.00 0.00 3.24
3807 3924 7.339466 ACCTTTTCAGTTGTTAATCAGAGTTGT 59.661 33.333 0.00 0.00 0.00 3.32
3866 3983 1.820519 CATGCAACTGCTACCATGGTT 59.179 47.619 25.38 7.42 42.66 3.67
3872 3989 4.012374 CAACTGCTACCATGGTTCAGAAT 58.988 43.478 34.64 25.14 34.21 2.40
3910 4027 9.695526 TTTTTCATTTCAGATTACCAGATGTTG 57.304 29.630 0.00 0.00 0.00 3.33
3913 4030 7.819644 TCATTTCAGATTACCAGATGTTGTTG 58.180 34.615 0.00 0.00 0.00 3.33
3925 4042 6.983890 ACCAGATGTTGTTGGAAATGTTTTAC 59.016 34.615 0.00 0.00 37.89 2.01
3926 4043 6.983307 CCAGATGTTGTTGGAAATGTTTTACA 59.017 34.615 0.00 0.00 36.55 2.41
3943 4060 8.382364 ATGTTTTACATTTGCCATTTGCAGTCA 61.382 33.333 0.00 0.00 39.64 3.41
3948 4065 2.818350 GCCATTTGCAGTCACAAGC 58.182 52.632 0.00 0.00 40.77 4.01
3973 4090 8.019669 GCTGTATTGCATGAAGAATACTATTGG 58.980 37.037 16.99 8.45 36.43 3.16
3974 4091 9.276590 CTGTATTGCATGAAGAATACTATTGGA 57.723 33.333 16.99 3.23 36.43 3.53
3975 4092 9.797642 TGTATTGCATGAAGAATACTATTGGAT 57.202 29.630 16.99 0.00 36.43 3.41
4006 4124 6.475727 AGGTATTTCTGTGTCGAAATATCACG 59.524 38.462 15.09 0.00 44.06 4.35
4015 4133 3.049912 TCGAAATATCACGCTCCATTCG 58.950 45.455 0.00 0.00 39.43 3.34
4165 4283 1.533625 TCAACTTCATCCAAAGGCCG 58.466 50.000 0.00 0.00 0.00 6.13
4175 4293 1.082104 CAAAGGCCGCTTCGTCAAC 60.082 57.895 0.00 0.00 0.00 3.18
4187 4305 3.871594 GCTTCGTCAACTTATGTATGCCT 59.128 43.478 0.00 0.00 0.00 4.75
4315 4433 4.215109 AGTGCAGTAAAAGGGTCAATGTT 58.785 39.130 0.00 0.00 0.00 2.71
4439 4560 6.640907 GGAAAAGTGCATACCAAAGTTGTAAG 59.359 38.462 0.00 0.00 0.00 2.34
4514 4635 7.466590 GCAGTTATCATAAAAAGAGGTGAGCTC 60.467 40.741 6.82 6.82 0.00 4.09
4537 4658 8.019094 GCTCAAAATATTTCTTTGCTGCATTTT 58.981 29.630 1.84 1.75 35.27 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.766670 ACAATGTCATGTCATGGATCCATAC 59.233 40.000 26.87 22.28 34.91 2.39
13 14 4.687018 CACCAAAACAATGTCATGTCATGG 59.313 41.667 12.90 6.01 41.31 3.66
18 19 3.132646 AGCACACCAAAACAATGTCATGT 59.867 39.130 0.00 0.00 34.24 3.21
54 55 4.141251 ACACTTTCTCCCAAGTTGGTATGT 60.141 41.667 20.54 10.23 34.60 2.29
55 56 4.398319 ACACTTTCTCCCAAGTTGGTATG 58.602 43.478 20.54 9.93 34.60 2.39
81 82 2.361119 GGCGTGTGTATCAGTATCCAGA 59.639 50.000 0.00 0.00 0.00 3.86
85 86 4.235360 GGTATGGCGTGTGTATCAGTATC 58.765 47.826 0.00 0.00 0.00 2.24
86 87 3.639561 TGGTATGGCGTGTGTATCAGTAT 59.360 43.478 0.00 0.00 0.00 2.12
87 88 3.025262 TGGTATGGCGTGTGTATCAGTA 58.975 45.455 0.00 0.00 0.00 2.74
88 89 1.828595 TGGTATGGCGTGTGTATCAGT 59.171 47.619 0.00 0.00 0.00 3.41
89 90 2.595124 TGGTATGGCGTGTGTATCAG 57.405 50.000 0.00 0.00 0.00 2.90
90 91 2.419436 CCTTGGTATGGCGTGTGTATCA 60.419 50.000 0.00 0.00 0.00 2.15
91 92 2.159014 TCCTTGGTATGGCGTGTGTATC 60.159 50.000 0.00 0.00 0.00 2.24
92 93 1.834896 TCCTTGGTATGGCGTGTGTAT 59.165 47.619 0.00 0.00 0.00 2.29
93 94 1.206132 CTCCTTGGTATGGCGTGTGTA 59.794 52.381 0.00 0.00 0.00 2.90
94 95 0.036388 CTCCTTGGTATGGCGTGTGT 60.036 55.000 0.00 0.00 0.00 3.72
95 96 1.369091 GCTCCTTGGTATGGCGTGTG 61.369 60.000 0.00 0.00 0.00 3.82
108 109 6.241645 AGTAGCAGAAAAATACTTGCTCCTT 58.758 36.000 0.58 0.00 34.29 3.36
129 130 3.620488 GGATGACATTCCCAGCAAAGTA 58.380 45.455 0.00 0.00 0.00 2.24
146 147 4.387598 CTTCTCAGCTCAATAAGGGGATG 58.612 47.826 0.00 0.00 0.00 3.51
148 149 2.774234 CCTTCTCAGCTCAATAAGGGGA 59.226 50.000 5.97 0.00 34.35 4.81
176 177 9.739276 TCAGTAACATCAATAAAAGTTCCAGAT 57.261 29.630 0.00 0.00 0.00 2.90
178 179 9.778993 CATCAGTAACATCAATAAAAGTTCCAG 57.221 33.333 0.00 0.00 0.00 3.86
179 180 9.513906 TCATCAGTAACATCAATAAAAGTTCCA 57.486 29.630 0.00 0.00 0.00 3.53
207 226 6.686630 TGGACATGTTACATGAATTTCCAAC 58.313 36.000 29.17 6.84 0.00 3.77
252 300 0.311790 AAACAGCAACCATGAGCACG 59.688 50.000 0.00 0.00 0.00 5.34
259 307 0.681175 GGCAGGAAAACAGCAACCAT 59.319 50.000 0.00 0.00 32.45 3.55
263 311 0.680618 CATGGGCAGGAAAACAGCAA 59.319 50.000 0.00 0.00 32.45 3.91
274 322 4.796038 AGATTCTGAAAAACATGGGCAG 57.204 40.909 0.00 0.00 0.00 4.85
275 323 6.855763 AATAGATTCTGAAAAACATGGGCA 57.144 33.333 0.00 0.00 0.00 5.36
276 324 8.552083 AAAAATAGATTCTGAAAAACATGGGC 57.448 30.769 0.00 0.00 0.00 5.36
277 325 9.154847 GGAAAAATAGATTCTGAAAAACATGGG 57.845 33.333 0.00 0.00 0.00 4.00
278 326 9.933723 AGGAAAAATAGATTCTGAAAAACATGG 57.066 29.630 0.00 0.00 0.00 3.66
301 349 1.474320 CGCGGGTTTTGGATGATAGGA 60.474 52.381 0.00 0.00 0.00 2.94
303 351 1.597663 GTCGCGGGTTTTGGATGATAG 59.402 52.381 6.13 0.00 0.00 2.08
323 371 0.376152 GCTTGTCATCATCACCGCTG 59.624 55.000 0.00 0.00 0.00 5.18
325 373 0.097674 GTGCTTGTCATCATCACCGC 59.902 55.000 0.00 0.00 0.00 5.68
329 377 4.011966 ACAGAAGTGCTTGTCATCATCA 57.988 40.909 0.00 0.00 0.00 3.07
330 378 4.214971 ACAACAGAAGTGCTTGTCATCATC 59.785 41.667 0.00 0.00 0.00 2.92
331 379 4.139786 ACAACAGAAGTGCTTGTCATCAT 58.860 39.130 0.00 0.00 0.00 2.45
332 380 3.544684 ACAACAGAAGTGCTTGTCATCA 58.455 40.909 0.00 0.00 0.00 3.07
333 381 4.752101 AGTACAACAGAAGTGCTTGTCATC 59.248 41.667 0.00 0.00 33.11 2.92
337 387 5.671493 AGTAAGTACAACAGAAGTGCTTGT 58.329 37.500 6.87 0.00 41.10 3.16
338 388 5.986135 AGAGTAAGTACAACAGAAGTGCTTG 59.014 40.000 6.87 0.00 41.10 4.01
342 392 6.579292 CGAAGAGAGTAAGTACAACAGAAGTG 59.421 42.308 0.00 0.00 0.00 3.16
355 405 1.710013 TTTGCGGCGAAGAGAGTAAG 58.290 50.000 12.98 0.00 0.00 2.34
357 407 1.999735 CATTTTGCGGCGAAGAGAGTA 59.000 47.619 12.98 0.00 0.00 2.59
358 408 0.798776 CATTTTGCGGCGAAGAGAGT 59.201 50.000 12.98 0.00 0.00 3.24
361 411 2.539547 CCATACATTTTGCGGCGAAGAG 60.540 50.000 12.98 2.84 0.00 2.85
362 412 1.400142 CCATACATTTTGCGGCGAAGA 59.600 47.619 12.98 0.00 0.00 2.87
363 413 1.400142 TCCATACATTTTGCGGCGAAG 59.600 47.619 12.98 0.00 0.00 3.79
364 414 1.400142 CTCCATACATTTTGCGGCGAA 59.600 47.619 12.98 0.00 0.00 4.70
365 415 1.013596 CTCCATACATTTTGCGGCGA 58.986 50.000 12.98 0.00 0.00 5.54
366 416 0.732571 ACTCCATACATTTTGCGGCG 59.267 50.000 0.51 0.51 0.00 6.46
367 417 2.017049 AGACTCCATACATTTTGCGGC 58.983 47.619 0.00 0.00 0.00 6.53
369 419 5.065218 AGCTAAAGACTCCATACATTTTGCG 59.935 40.000 0.00 0.00 36.93 4.85
370 420 6.094048 TCAGCTAAAGACTCCATACATTTTGC 59.906 38.462 0.00 0.00 33.67 3.68
371 421 7.615582 TCAGCTAAAGACTCCATACATTTTG 57.384 36.000 0.00 0.00 0.00 2.44
372 422 9.905713 TTATCAGCTAAAGACTCCATACATTTT 57.094 29.630 0.00 0.00 0.00 1.82
444 509 9.734620 CAATTGTCACTAGATTCACTTTCAAAA 57.265 29.630 0.00 0.00 0.00 2.44
448 513 8.087982 TCACAATTGTCACTAGATTCACTTTC 57.912 34.615 8.48 0.00 0.00 2.62
449 514 8.345565 GTTCACAATTGTCACTAGATTCACTTT 58.654 33.333 8.48 0.00 0.00 2.66
452 517 7.072030 GTGTTCACAATTGTCACTAGATTCAC 58.928 38.462 17.30 14.18 0.00 3.18
453 518 6.204688 GGTGTTCACAATTGTCACTAGATTCA 59.795 38.462 21.45 10.79 32.97 2.57
454 519 6.204688 TGGTGTTCACAATTGTCACTAGATTC 59.795 38.462 21.45 9.70 32.97 2.52
455 520 6.061441 TGGTGTTCACAATTGTCACTAGATT 58.939 36.000 21.45 0.00 32.97 2.40
456 521 5.620206 TGGTGTTCACAATTGTCACTAGAT 58.380 37.500 21.45 0.00 32.97 1.98
459 524 5.825151 TCAATGGTGTTCACAATTGTCACTA 59.175 36.000 23.73 18.12 32.97 2.74
460 525 4.644234 TCAATGGTGTTCACAATTGTCACT 59.356 37.500 23.73 6.78 32.97 3.41
462 527 5.787953 ATCAATGGTGTTCACAATTGTCA 57.212 34.783 23.73 12.33 0.00 3.58
463 528 7.011295 ACAAAATCAATGGTGTTCACAATTGTC 59.989 33.333 23.73 0.00 0.00 3.18
464 529 6.822676 ACAAAATCAATGGTGTTCACAATTGT 59.177 30.769 23.73 4.92 0.00 2.71
465 530 7.011202 TCACAAAATCAATGGTGTTCACAATTG 59.989 33.333 20.69 20.69 33.17 2.32
466 531 7.046652 TCACAAAATCAATGGTGTTCACAATT 58.953 30.769 5.32 2.73 33.17 2.32
467 532 6.580788 TCACAAAATCAATGGTGTTCACAAT 58.419 32.000 5.32 0.00 33.17 2.71
468 533 5.970592 TCACAAAATCAATGGTGTTCACAA 58.029 33.333 5.32 0.00 33.17 3.33
469 534 5.588958 TCACAAAATCAATGGTGTTCACA 57.411 34.783 5.32 0.00 33.17 3.58
470 535 7.867403 ACTATTCACAAAATCAATGGTGTTCAC 59.133 33.333 0.00 0.00 33.17 3.18
471 536 7.866898 CACTATTCACAAAATCAATGGTGTTCA 59.133 33.333 0.00 0.00 35.42 3.18
472 537 7.148755 GCACTATTCACAAAATCAATGGTGTTC 60.149 37.037 8.55 0.00 39.75 3.18
473 538 6.646240 GCACTATTCACAAAATCAATGGTGTT 59.354 34.615 8.55 0.00 39.75 3.32
474 539 6.158598 GCACTATTCACAAAATCAATGGTGT 58.841 36.000 8.55 0.00 39.75 4.16
475 540 5.286797 CGCACTATTCACAAAATCAATGGTG 59.713 40.000 3.71 3.71 40.26 4.17
476 541 5.182950 TCGCACTATTCACAAAATCAATGGT 59.817 36.000 0.00 0.00 0.00 3.55
477 542 5.639757 TCGCACTATTCACAAAATCAATGG 58.360 37.500 0.00 0.00 0.00 3.16
478 543 5.228635 GCTCGCACTATTCACAAAATCAATG 59.771 40.000 0.00 0.00 0.00 2.82
479 544 5.124457 AGCTCGCACTATTCACAAAATCAAT 59.876 36.000 0.00 0.00 0.00 2.57
480 545 4.455533 AGCTCGCACTATTCACAAAATCAA 59.544 37.500 0.00 0.00 0.00 2.57
481 546 4.002982 AGCTCGCACTATTCACAAAATCA 58.997 39.130 0.00 0.00 0.00 2.57
482 547 4.331168 AGAGCTCGCACTATTCACAAAATC 59.669 41.667 8.37 0.00 0.00 2.17
483 548 4.256920 AGAGCTCGCACTATTCACAAAAT 58.743 39.130 8.37 0.00 0.00 1.82
484 549 3.664107 AGAGCTCGCACTATTCACAAAA 58.336 40.909 8.37 0.00 0.00 2.44
485 550 3.056536 AGAGAGCTCGCACTATTCACAAA 60.057 43.478 20.08 0.00 34.09 2.83
486 551 2.493675 AGAGAGCTCGCACTATTCACAA 59.506 45.455 20.08 0.00 34.09 3.33
487 552 2.095461 AGAGAGCTCGCACTATTCACA 58.905 47.619 20.08 0.00 34.09 3.58
488 553 2.357637 AGAGAGAGCTCGCACTATTCAC 59.642 50.000 20.08 3.42 45.98 3.18
489 554 2.357323 CAGAGAGAGCTCGCACTATTCA 59.643 50.000 20.08 0.00 45.98 2.57
490 555 2.616376 TCAGAGAGAGCTCGCACTATTC 59.384 50.000 20.08 7.82 45.98 1.75
491 556 2.357637 GTCAGAGAGAGCTCGCACTATT 59.642 50.000 20.08 0.00 45.98 1.73
492 557 1.946768 GTCAGAGAGAGCTCGCACTAT 59.053 52.381 20.08 9.68 45.98 2.12
493 558 1.065782 AGTCAGAGAGAGCTCGCACTA 60.066 52.381 20.08 5.32 45.98 2.74
494 559 0.322456 AGTCAGAGAGAGCTCGCACT 60.322 55.000 20.08 15.69 45.98 4.40
495 560 0.098728 GAGTCAGAGAGAGCTCGCAC 59.901 60.000 20.08 13.48 45.98 5.34
496 561 1.365368 CGAGTCAGAGAGAGCTCGCA 61.365 60.000 20.08 0.00 45.98 5.10
497 562 1.087202 TCGAGTCAGAGAGAGCTCGC 61.087 60.000 9.76 9.76 45.98 5.03
498 563 0.650512 GTCGAGTCAGAGAGAGCTCG 59.349 60.000 8.37 6.48 45.98 5.03
499 564 1.014352 GGTCGAGTCAGAGAGAGCTC 58.986 60.000 5.27 5.27 41.62 4.09
500 565 0.618458 AGGTCGAGTCAGAGAGAGCT 59.382 55.000 0.00 0.00 36.73 4.09
501 566 1.014352 GAGGTCGAGTCAGAGAGAGC 58.986 60.000 0.00 0.00 0.00 4.09
502 567 1.663695 GGAGGTCGAGTCAGAGAGAG 58.336 60.000 0.00 0.00 0.00 3.20
503 568 0.253610 GGGAGGTCGAGTCAGAGAGA 59.746 60.000 0.00 0.00 0.00 3.10
504 569 0.254747 AGGGAGGTCGAGTCAGAGAG 59.745 60.000 0.00 0.00 0.00 3.20
505 570 1.487142 CTAGGGAGGTCGAGTCAGAGA 59.513 57.143 0.00 0.00 0.00 3.10
506 571 1.487142 TCTAGGGAGGTCGAGTCAGAG 59.513 57.143 0.00 0.00 0.00 3.35
507 572 1.581223 TCTAGGGAGGTCGAGTCAGA 58.419 55.000 0.00 0.00 0.00 3.27
508 573 2.226330 CATCTAGGGAGGTCGAGTCAG 58.774 57.143 0.00 0.00 0.00 3.51
509 574 1.564818 ACATCTAGGGAGGTCGAGTCA 59.435 52.381 0.00 0.00 30.00 3.41
510 575 1.950909 CACATCTAGGGAGGTCGAGTC 59.049 57.143 0.00 0.00 33.99 3.36
511 576 2.024825 GCACATCTAGGGAGGTCGAGT 61.025 57.143 0.00 0.00 33.99 4.18
512 577 0.671251 GCACATCTAGGGAGGTCGAG 59.329 60.000 0.00 0.00 33.99 4.04
513 578 0.755698 GGCACATCTAGGGAGGTCGA 60.756 60.000 0.00 0.00 33.99 4.20
514 579 1.043116 TGGCACATCTAGGGAGGTCG 61.043 60.000 0.00 0.00 33.99 4.79
515 580 2.916355 TGGCACATCTAGGGAGGTC 58.084 57.895 0.00 0.00 33.99 3.85
519 584 9.116705 ATGCAATAAGTATGGCACATCTAGGGA 62.117 40.741 2.43 0.00 44.77 4.20
520 585 7.025962 ATGCAATAAGTATGGCACATCTAGGG 61.026 42.308 2.43 0.00 44.77 3.53
521 586 5.942236 ATGCAATAAGTATGGCACATCTAGG 59.058 40.000 2.43 0.00 44.77 3.02
522 587 8.728337 ATATGCAATAAGTATGGCACATCTAG 57.272 34.615 2.43 0.00 44.77 2.43
523 588 8.722480 GATATGCAATAAGTATGGCACATCTA 57.278 34.615 10.47 0.00 44.77 1.98
524 589 7.400439 AGATATGCAATAAGTATGGCACATCT 58.600 34.615 13.48 13.48 46.66 2.90
525 590 7.621428 AGATATGCAATAAGTATGGCACATC 57.379 36.000 9.93 9.93 44.77 3.06
526 591 9.690913 ATTAGATATGCAATAAGTATGGCACAT 57.309 29.630 2.43 0.00 44.77 3.21
527 592 9.519191 AATTAGATATGCAATAAGTATGGCACA 57.481 29.630 2.43 0.00 44.77 4.57
528 593 9.778993 CAATTAGATATGCAATAAGTATGGCAC 57.221 33.333 2.43 0.00 44.77 5.01
529 594 9.737844 TCAATTAGATATGCAATAAGTATGGCA 57.262 29.630 2.87 2.87 45.92 4.92
541 606 9.341078 TGCTTAATTCACTCAATTAGATATGCA 57.659 29.630 0.00 0.00 38.06 3.96
549 614 9.859427 CCTTTTCATGCTTAATTCACTCAATTA 57.141 29.630 0.00 0.00 36.09 1.40
550 615 8.587608 TCCTTTTCATGCTTAATTCACTCAATT 58.412 29.630 0.00 0.00 38.35 2.32
551 616 8.125978 TCCTTTTCATGCTTAATTCACTCAAT 57.874 30.769 0.00 0.00 0.00 2.57
552 617 7.523293 TCCTTTTCATGCTTAATTCACTCAA 57.477 32.000 0.00 0.00 0.00 3.02
553 618 7.523293 TTCCTTTTCATGCTTAATTCACTCA 57.477 32.000 0.00 0.00 0.00 3.41
554 619 8.816640 TTTTCCTTTTCATGCTTAATTCACTC 57.183 30.769 0.00 0.00 0.00 3.51
555 620 8.641541 TCTTTTCCTTTTCATGCTTAATTCACT 58.358 29.630 0.00 0.00 0.00 3.41
556 621 8.816640 TCTTTTCCTTTTCATGCTTAATTCAC 57.183 30.769 0.00 0.00 0.00 3.18
557 622 9.829507 TTTCTTTTCCTTTTCATGCTTAATTCA 57.170 25.926 0.00 0.00 0.00 2.57
593 658 5.253330 ACGTTGAGATTGGTGTGGATATTT 58.747 37.500 0.00 0.00 0.00 1.40
594 659 4.843728 ACGTTGAGATTGGTGTGGATATT 58.156 39.130 0.00 0.00 0.00 1.28
595 660 4.487714 ACGTTGAGATTGGTGTGGATAT 57.512 40.909 0.00 0.00 0.00 1.63
597 662 2.859165 ACGTTGAGATTGGTGTGGAT 57.141 45.000 0.00 0.00 0.00 3.41
598 663 3.322541 TCTTACGTTGAGATTGGTGTGGA 59.677 43.478 0.00 0.00 0.00 4.02
599 664 3.659786 TCTTACGTTGAGATTGGTGTGG 58.340 45.455 0.00 0.00 0.00 4.17
600 665 4.929211 TGATCTTACGTTGAGATTGGTGTG 59.071 41.667 13.35 0.00 34.13 3.82
602 667 6.313658 TCATTGATCTTACGTTGAGATTGGTG 59.686 38.462 13.35 11.92 34.13 4.17
603 668 6.406370 TCATTGATCTTACGTTGAGATTGGT 58.594 36.000 13.35 3.16 34.13 3.67
609 674 9.347934 GTCCTATATCATTGATCTTACGTTGAG 57.652 37.037 1.55 0.00 0.00 3.02
611 676 9.698309 AAGTCCTATATCATTGATCTTACGTTG 57.302 33.333 1.55 0.00 0.00 4.10
619 684 9.311916 GCACATCTAAGTCCTATATCATTGATC 57.688 37.037 1.55 0.00 0.00 2.92
621 686 8.193953 TGCACATCTAAGTCCTATATCATTGA 57.806 34.615 0.00 0.00 0.00 2.57
622 687 8.837788 TTGCACATCTAAGTCCTATATCATTG 57.162 34.615 0.00 0.00 0.00 2.82
625 690 9.314133 AGTATTGCACATCTAAGTCCTATATCA 57.686 33.333 0.00 0.00 0.00 2.15
630 695 8.367911 CCATAAGTATTGCACATCTAAGTCCTA 58.632 37.037 0.00 0.00 0.00 2.94
631 696 7.220030 CCATAAGTATTGCACATCTAAGTCCT 58.780 38.462 0.00 0.00 0.00 3.85
632 697 6.073003 GCCATAAGTATTGCACATCTAAGTCC 60.073 42.308 0.00 0.00 0.00 3.85
635 700 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
643 708 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
644 709 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
675 740 9.646427 TGTCTTTGTATTAAAAACAGTTTTGCT 57.354 25.926 12.13 0.29 37.51 3.91
680 745 9.068008 CGTGTTGTCTTTGTATTAAAAACAGTT 57.932 29.630 0.00 0.00 0.00 3.16
682 747 7.543756 GCGTGTTGTCTTTGTATTAAAAACAG 58.456 34.615 0.00 0.00 0.00 3.16
683 748 6.194876 CGCGTGTTGTCTTTGTATTAAAAACA 59.805 34.615 0.00 0.00 0.00 2.83
687 752 5.406767 ACGCGTGTTGTCTTTGTATTAAA 57.593 34.783 12.93 0.00 0.00 1.52
689 754 5.406767 AAACGCGTGTTGTCTTTGTATTA 57.593 34.783 14.98 0.00 38.62 0.98
693 758 1.202098 GGAAACGCGTGTTGTCTTTGT 60.202 47.619 14.98 0.00 38.62 2.83
694 759 1.462791 GGAAACGCGTGTTGTCTTTG 58.537 50.000 14.98 0.00 38.62 2.77
695 760 0.379316 GGGAAACGCGTGTTGTCTTT 59.621 50.000 14.98 0.00 38.62 2.52
696 761 0.463116 AGGGAAACGCGTGTTGTCTT 60.463 50.000 14.98 0.57 38.62 3.01
697 762 0.878961 GAGGGAAACGCGTGTTGTCT 60.879 55.000 14.98 12.66 38.62 3.41
698 763 0.878961 AGAGGGAAACGCGTGTTGTC 60.879 55.000 14.98 13.95 38.62 3.18
699 764 0.878961 GAGAGGGAAACGCGTGTTGT 60.879 55.000 14.98 5.69 38.62 3.32
700 765 1.860078 GAGAGGGAAACGCGTGTTG 59.140 57.895 14.98 0.00 38.62 3.33
702 767 2.049433 CGAGAGGGAAACGCGTGT 60.049 61.111 14.98 7.31 0.00 4.49
703 768 0.736325 ATTCGAGAGGGAAACGCGTG 60.736 55.000 14.98 0.00 32.94 5.34
704 769 0.458025 GATTCGAGAGGGAAACGCGT 60.458 55.000 5.58 5.58 32.94 6.01
705 770 0.179134 AGATTCGAGAGGGAAACGCG 60.179 55.000 3.53 3.53 0.00 6.01
706 771 1.135083 TGAGATTCGAGAGGGAAACGC 60.135 52.381 0.00 0.00 0.00 4.84
707 772 2.941453 TGAGATTCGAGAGGGAAACG 57.059 50.000 0.00 0.00 0.00 3.60
708 773 4.759782 TCATTGAGATTCGAGAGGGAAAC 58.240 43.478 0.00 0.00 0.00 2.78
709 774 5.620738 ATCATTGAGATTCGAGAGGGAAA 57.379 39.130 0.00 0.00 31.20 3.13
710 775 6.268617 ACATATCATTGAGATTCGAGAGGGAA 59.731 38.462 0.00 0.00 38.19 3.97
711 776 5.777223 ACATATCATTGAGATTCGAGAGGGA 59.223 40.000 0.00 0.00 38.19 4.20
712 777 6.035368 ACATATCATTGAGATTCGAGAGGG 57.965 41.667 0.00 0.00 38.19 4.30
713 778 7.377398 AGAACATATCATTGAGATTCGAGAGG 58.623 38.462 0.00 0.00 38.19 3.69
714 779 8.298854 AGAGAACATATCATTGAGATTCGAGAG 58.701 37.037 0.00 0.00 38.19 3.20
715 780 8.175925 AGAGAACATATCATTGAGATTCGAGA 57.824 34.615 0.00 0.00 38.19 4.04
716 781 8.081025 TGAGAGAACATATCATTGAGATTCGAG 58.919 37.037 0.00 0.00 38.19 4.04
717 782 7.945134 TGAGAGAACATATCATTGAGATTCGA 58.055 34.615 0.00 0.00 38.19 3.71
718 783 8.585189 TTGAGAGAACATATCATTGAGATTCG 57.415 34.615 0.00 0.00 38.19 3.34
721 786 9.676861 TGTTTTGAGAGAACATATCATTGAGAT 57.323 29.630 0.00 0.00 35.18 2.75
722 787 9.506018 TTGTTTTGAGAGAACATATCATTGAGA 57.494 29.630 0.00 0.00 36.92 3.27
757 822 8.340443 CGTGACAAAACATCATATCATTGAGAT 58.660 33.333 0.00 0.00 40.86 2.75
758 823 7.677041 GCGTGACAAAACATCATATCATTGAGA 60.677 37.037 0.00 0.00 0.00 3.27
759 824 6.412943 GCGTGACAAAACATCATATCATTGAG 59.587 38.462 0.00 0.00 0.00 3.02
760 825 6.093909 AGCGTGACAAAACATCATATCATTGA 59.906 34.615 0.00 0.00 0.00 2.57
761 826 6.195798 CAGCGTGACAAAACATCATATCATTG 59.804 38.462 0.00 0.00 0.00 2.82
762 827 6.260377 CAGCGTGACAAAACATCATATCATT 58.740 36.000 0.00 0.00 0.00 2.57
763 828 5.731406 GCAGCGTGACAAAACATCATATCAT 60.731 40.000 0.00 0.00 0.00 2.45
764 829 4.437255 GCAGCGTGACAAAACATCATATCA 60.437 41.667 0.00 0.00 0.00 2.15
765 830 4.031028 GCAGCGTGACAAAACATCATATC 58.969 43.478 0.00 0.00 0.00 1.63
766 831 3.691118 AGCAGCGTGACAAAACATCATAT 59.309 39.130 0.00 0.00 0.00 1.78
767 832 3.073678 AGCAGCGTGACAAAACATCATA 58.926 40.909 0.00 0.00 0.00 2.15
772 837 1.063972 GCAGCAGCGTGACAAAACA 59.936 52.632 0.00 0.00 0.00 2.83
775 840 2.715005 GTGCAGCAGCGTGACAAA 59.285 55.556 0.00 0.00 46.23 2.83
806 871 0.322456 TCGTCTTCCTTTGCCCATGG 60.322 55.000 4.14 4.14 0.00 3.66
807 872 1.089920 CTCGTCTTCCTTTGCCCATG 58.910 55.000 0.00 0.00 0.00 3.66
808 873 0.984230 TCTCGTCTTCCTTTGCCCAT 59.016 50.000 0.00 0.00 0.00 4.00
809 874 0.034896 GTCTCGTCTTCCTTTGCCCA 59.965 55.000 0.00 0.00 0.00 5.36
810 875 0.321996 AGTCTCGTCTTCCTTTGCCC 59.678 55.000 0.00 0.00 0.00 5.36
811 876 1.433534 CAGTCTCGTCTTCCTTTGCC 58.566 55.000 0.00 0.00 0.00 4.52
812 877 0.793250 GCAGTCTCGTCTTCCTTTGC 59.207 55.000 0.00 0.00 0.00 3.68
813 878 1.063806 CGCAGTCTCGTCTTCCTTTG 58.936 55.000 0.00 0.00 0.00 2.77
814 879 0.674534 ACGCAGTCTCGTCTTCCTTT 59.325 50.000 0.00 0.00 29.74 3.11
815 880 2.342478 ACGCAGTCTCGTCTTCCTT 58.658 52.632 0.00 0.00 29.74 3.36
816 881 4.082657 ACGCAGTCTCGTCTTCCT 57.917 55.556 0.00 0.00 29.74 3.36
972 1039 5.145564 GGTTGGAGATGGGATGTAGTACTA 58.854 45.833 0.00 0.00 0.00 1.82
974 1041 3.243771 CGGTTGGAGATGGGATGTAGTAC 60.244 52.174 0.00 0.00 0.00 2.73
975 1042 2.963101 CGGTTGGAGATGGGATGTAGTA 59.037 50.000 0.00 0.00 0.00 1.82
976 1043 1.762957 CGGTTGGAGATGGGATGTAGT 59.237 52.381 0.00 0.00 0.00 2.73
977 1044 1.541233 GCGGTTGGAGATGGGATGTAG 60.541 57.143 0.00 0.00 0.00 2.74
978 1045 0.468226 GCGGTTGGAGATGGGATGTA 59.532 55.000 0.00 0.00 0.00 2.29
979 1046 1.224592 GCGGTTGGAGATGGGATGT 59.775 57.895 0.00 0.00 0.00 3.06
980 1047 1.526917 GGCGGTTGGAGATGGGATG 60.527 63.158 0.00 0.00 0.00 3.51
981 1048 2.919043 GGCGGTTGGAGATGGGAT 59.081 61.111 0.00 0.00 0.00 3.85
1005 1073 4.451652 GGGGACGACGACGACGAC 62.452 72.222 25.15 18.64 42.66 4.34
1579 1647 1.681166 CCATCAGGGCAAGAACAGGAG 60.681 57.143 0.00 0.00 0.00 3.69
1731 1799 1.411977 CCACTCCTCATCTAGCACCAG 59.588 57.143 0.00 0.00 0.00 4.00
1760 1828 2.961526 AGCTGAACACGTATGGGTAG 57.038 50.000 0.00 0.00 0.00 3.18
1945 2013 3.096852 CCACTTAAGGGGGAAATCCAAC 58.903 50.000 16.73 0.00 37.91 3.77
2343 2411 1.086696 ACCGTTCCATGCATTTCGAG 58.913 50.000 0.00 0.00 0.00 4.04
2424 2492 0.034059 GGGCACTCTATCACCATCCG 59.966 60.000 0.00 0.00 0.00 4.18
2443 2511 2.411547 GCGGTGAACTGAATCGTTTGAG 60.412 50.000 0.00 0.00 0.00 3.02
2471 2539 6.537660 GTGACTCCATAAAACATGTACCCTAC 59.462 42.308 0.00 0.00 0.00 3.18
2596 2664 3.503748 AGAACTGCTGCTTTCCATGTAAC 59.496 43.478 0.00 0.00 0.00 2.50
2599 2667 2.283145 AGAACTGCTGCTTTCCATGT 57.717 45.000 0.00 0.00 0.00 3.21
2603 2671 2.880890 TCAGAAAGAACTGCTGCTTTCC 59.119 45.455 15.28 4.04 46.92 3.13
2604 2672 4.036144 ACTTCAGAAAGAACTGCTGCTTTC 59.964 41.667 12.63 12.63 46.38 2.62
2744 2812 7.696872 GTGAGTTCCAAGACAAGTTAGAAAAAC 59.303 37.037 0.00 0.00 0.00 2.43
2950 3018 4.060205 ACTTCAATTCATTTTGCACTGGC 58.940 39.130 0.00 0.00 41.68 4.85
2974 3042 1.003233 GACCCTGACAGGAACAGCC 60.003 63.158 23.77 0.00 37.67 4.85
3049 3117 2.983229 AGCTCCATAACAGCTCTTGTG 58.017 47.619 0.00 0.00 44.25 3.33
3166 3234 0.108615 CCAGTGGAGTACCTTCAGCG 60.109 60.000 1.68 0.00 37.04 5.18
3346 3414 7.799914 GCATTTGCAAACAGAAAATTTAGAAGG 59.200 33.333 15.41 0.00 41.59 3.46
3535 3603 4.437239 CATCACCTCGACTGCTAAAGAAT 58.563 43.478 0.00 0.00 0.00 2.40
3592 3663 8.509690 TCAGACTATGCAAATCTCAAGAAAAAG 58.490 33.333 0.00 0.00 0.00 2.27
3605 3676 5.500234 ACTTAGCCAATCAGACTATGCAAA 58.500 37.500 0.00 0.00 0.00 3.68
3621 3692 4.395625 ACTACCAACTTGGAAACTTAGCC 58.604 43.478 15.14 0.00 40.96 3.93
3653 3758 2.544267 GGTCACTTCAGTGTTGCACTAC 59.456 50.000 6.84 0.00 43.43 2.73
3730 3847 5.003804 GTGGGACCATAGATGCGATAAAAT 58.996 41.667 0.00 0.00 0.00 1.82
3737 3854 0.250038 CAGGTGGGACCATAGATGCG 60.250 60.000 0.00 0.00 41.95 4.73
3749 3866 8.475639 GTGTATCCAGTAATATATACAGGTGGG 58.524 40.741 0.00 0.00 35.95 4.61
3750 3867 9.256228 AGTGTATCCAGTAATATATACAGGTGG 57.744 37.037 0.00 0.00 35.95 4.61
3764 3881 9.280174 CTGAAAAGGTAAAAAGTGTATCCAGTA 57.720 33.333 0.00 0.00 0.00 2.74
3768 3885 8.410912 ACAACTGAAAAGGTAAAAAGTGTATCC 58.589 33.333 0.00 0.00 0.00 2.59
3790 3907 5.873164 ACCCGATACAACTCTGATTAACAAC 59.127 40.000 0.00 0.00 0.00 3.32
3803 3920 3.243267 ACAGTTTGCAAACCCGATACAAC 60.243 43.478 33.09 10.27 39.71 3.32
3804 3921 2.952978 ACAGTTTGCAAACCCGATACAA 59.047 40.909 33.09 0.00 39.71 2.41
3807 3924 5.968528 AATTACAGTTTGCAAACCCGATA 57.031 34.783 33.09 19.47 39.71 2.92
3901 4018 6.983307 TGTAAAACATTTCCAACAACATCTGG 59.017 34.615 0.00 0.00 0.00 3.86
3930 4047 0.316204 AGCTTGTGACTGCAAATGGC 59.684 50.000 4.31 0.00 45.13 4.40
3931 4048 1.338973 ACAGCTTGTGACTGCAAATGG 59.661 47.619 4.31 0.00 38.79 3.16
3943 4060 5.909621 ATTCTTCATGCAATACAGCTTGT 57.090 34.783 0.00 0.00 39.75 3.16
3948 4065 9.276590 TCCAATAGTATTCTTCATGCAATACAG 57.723 33.333 17.38 8.95 37.76 2.74
3973 4090 8.475331 TTCGACACAGAAATACCTCTTTTATC 57.525 34.615 0.00 0.00 0.00 1.75
3974 4091 8.842358 TTTCGACACAGAAATACCTCTTTTAT 57.158 30.769 0.00 0.00 35.44 1.40
3975 4092 8.842358 ATTTCGACACAGAAATACCTCTTTTA 57.158 30.769 3.45 0.00 45.73 1.52
4159 4277 0.034337 TAAGTTGACGAAGCGGCCTT 59.966 50.000 0.00 0.00 31.60 4.35
4165 4283 3.871594 AGGCATACATAAGTTGACGAAGC 59.128 43.478 0.00 0.00 0.00 3.86
4175 4293 8.627208 ATTATCAAACCTGAGGCATACATAAG 57.373 34.615 0.00 0.00 34.23 1.73
4209 4327 4.221482 GGCTTTTCCTGATTCTTGATGGTT 59.779 41.667 0.00 0.00 0.00 3.67
4210 4328 3.766051 GGCTTTTCCTGATTCTTGATGGT 59.234 43.478 0.00 0.00 0.00 3.55
4211 4329 3.765511 TGGCTTTTCCTGATTCTTGATGG 59.234 43.478 0.00 0.00 35.26 3.51
4439 4560 1.804748 GATGGTCCGAAGTTTCACCAC 59.195 52.381 6.30 0.01 41.74 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.