Multiple sequence alignment - TraesCS4A01G286200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G286200 chr4A 100.000 3247 0 0 1 3247 591860715 591863961 0.000000e+00 5997.0
1 TraesCS4A01G286200 chr4B 89.785 1351 66 27 702 2044 20727238 20728524 0.000000e+00 1664.0
2 TraesCS4A01G286200 chr4B 84.773 926 92 24 2275 3178 20728768 20729666 0.000000e+00 883.0
3 TraesCS4A01G286200 chr4B 81.210 463 39 16 77 512 20726688 20727129 2.420000e-86 329.0
4 TraesCS4A01G286200 chr4B 98.485 66 0 1 3183 3247 20732732 20732797 7.360000e-22 115.0
5 TraesCS4A01G286200 chr4B 95.833 48 2 0 41 88 20726620 20726667 9.660000e-11 78.7
6 TraesCS4A01G286200 chr1D 84.615 962 88 26 570 1531 21413116 21412215 0.000000e+00 902.0
7 TraesCS4A01G286200 chr1D 81.362 558 57 14 1 542 21413833 21413307 8.380000e-111 411.0
8 TraesCS4A01G286200 chr7B 84.569 823 65 40 1456 2254 111269407 111270191 0.000000e+00 760.0
9 TraesCS4A01G286200 chr7B 92.486 346 26 0 996 1341 111268973 111269318 2.250000e-136 496.0
10 TraesCS4A01G286200 chr1B 83.660 765 70 20 769 1531 35361249 35361960 0.000000e+00 669.0
11 TraesCS4A01G286200 chr1B 84.592 649 78 10 886 1531 35662464 35661835 2.750000e-175 625.0
12 TraesCS4A01G286200 chr1B 84.071 678 65 16 32 684 35360559 35361218 5.950000e-172 614.0
13 TraesCS4A01G286200 chr1B 83.901 323 31 7 1 307 35677652 35677335 4.100000e-74 289.0
14 TraesCS4A01G286200 chr7D 88.368 576 28 25 1457 2031 148129756 148130293 0.000000e+00 656.0
15 TraesCS4A01G286200 chr7D 92.486 346 26 0 996 1341 148129316 148129661 2.250000e-136 496.0
16 TraesCS4A01G286200 chr7D 89.937 159 15 1 2096 2254 148130380 148130537 1.530000e-48 204.0
17 TraesCS4A01G286200 chr7D 82.353 136 17 3 2512 2640 148130573 148130708 9.520000e-21 111.0
18 TraesCS4A01G286200 chr1A 88.377 499 54 1 1031 1529 22985367 22984873 6.000000e-167 597.0
19 TraesCS4A01G286200 chr1A 83.544 395 39 10 1 375 22997915 22997527 2.400000e-91 346.0
20 TraesCS4A01G286200 chr7A 93.452 336 16 5 1456 1787 149167259 149167592 8.090000e-136 494.0
21 TraesCS4A01G286200 chr7A 91.738 351 28 1 992 1341 149166819 149167169 1.350000e-133 486.0
22 TraesCS4A01G286200 chr7A 95.364 151 7 0 1881 2031 149167641 149167791 1.160000e-59 241.0
23 TraesCS4A01G286200 chr7A 86.339 183 16 6 2096 2278 149167878 149168051 1.190000e-44 191.0
24 TraesCS4A01G286200 chr5D 84.556 259 32 5 1084 1341 426639489 426639740 1.930000e-62 250.0
25 TraesCS4A01G286200 chr5D 80.328 305 56 4 1457 1759 426639840 426640142 9.060000e-56 228.0
26 TraesCS4A01G286200 chr5D 85.385 130 17 2 1889 2017 128564777 128564649 2.030000e-27 134.0
27 TraesCS4A01G286200 chr5B 79.747 316 57 6 1446 1759 516538225 516538535 4.220000e-54 222.0
28 TraesCS4A01G286200 chr5A 79.747 316 57 6 1446 1759 540681998 540682308 4.220000e-54 222.0
29 TraesCS4A01G286200 chr5A 85.385 130 17 2 1889 2017 143552244 143552116 2.030000e-27 134.0
30 TraesCS4A01G286200 chr5A 96.875 32 1 0 944 975 136316566 136316535 2.000000e-03 54.7
31 TraesCS4A01G286200 chr2A 79.530 298 58 3 1464 1759 29721224 29720928 3.280000e-50 209.0
32 TraesCS4A01G286200 chr2D 78.498 293 63 0 1467 1759 27483185 27482893 3.310000e-45 193.0
33 TraesCS4A01G286200 chr6B 83.621 116 19 0 1889 2004 709019961 709019846 3.430000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G286200 chr4A 591860715 591863961 3246 False 5997.00 5997 100.00000 1 3247 1 chr4A.!!$F1 3246
1 TraesCS4A01G286200 chr4B 20726620 20732797 6177 False 613.94 1664 90.01720 41 3247 5 chr4B.!!$F1 3206
2 TraesCS4A01G286200 chr1D 21412215 21413833 1618 True 656.50 902 82.98850 1 1531 2 chr1D.!!$R1 1530
3 TraesCS4A01G286200 chr7B 111268973 111270191 1218 False 628.00 760 88.52750 996 2254 2 chr7B.!!$F1 1258
4 TraesCS4A01G286200 chr1B 35360559 35361960 1401 False 641.50 669 83.86550 32 1531 2 chr1B.!!$F1 1499
5 TraesCS4A01G286200 chr1B 35661835 35662464 629 True 625.00 625 84.59200 886 1531 1 chr1B.!!$R1 645
6 TraesCS4A01G286200 chr7D 148129316 148130708 1392 False 366.75 656 88.28600 996 2640 4 chr7D.!!$F1 1644
7 TraesCS4A01G286200 chr7A 149166819 149168051 1232 False 353.00 494 91.72325 992 2278 4 chr7A.!!$F1 1286
8 TraesCS4A01G286200 chr5D 426639489 426640142 653 False 239.00 250 82.44200 1084 1759 2 chr5D.!!$F1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.038166 ATTCTTTCCGAAGCCAGCCA 59.962 50.0 0.0 0.0 34.56 4.75 F
927 1189 0.040958 CTTGCACTCTTGGCGTGAAC 60.041 55.0 0.0 0.0 34.35 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 2183 0.097674 CCAGCTGCACGCAGTTAATC 59.902 55.0 19.56 3.44 41.61 1.75 R
2309 2787 0.038526 ACCCACTTGTAGCGACGAAG 60.039 55.0 0.00 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.820284 CCTCAATATTCTTTCCGAAGCC 57.180 45.455 0.00 0.00 34.56 4.35
22 23 4.199310 CCTCAATATTCTTTCCGAAGCCA 58.801 43.478 0.00 0.00 34.56 4.75
23 24 4.274459 CCTCAATATTCTTTCCGAAGCCAG 59.726 45.833 0.00 0.00 34.56 4.85
24 25 3.627577 TCAATATTCTTTCCGAAGCCAGC 59.372 43.478 0.00 0.00 34.56 4.85
25 26 2.038387 TATTCTTTCCGAAGCCAGCC 57.962 50.000 0.00 0.00 34.56 4.85
26 27 0.038166 ATTCTTTCCGAAGCCAGCCA 59.962 50.000 0.00 0.00 34.56 4.75
27 28 0.606401 TTCTTTCCGAAGCCAGCCAG 60.606 55.000 0.00 0.00 32.75 4.85
28 29 2.672996 TTTCCGAAGCCAGCCAGC 60.673 61.111 0.00 0.00 0.00 4.85
30 31 1.836999 TTTCCGAAGCCAGCCAGCTA 61.837 55.000 0.00 0.00 44.11 3.32
34 35 1.451028 GAAGCCAGCCAGCTACCAG 60.451 63.158 0.00 0.00 44.11 4.00
39 40 1.260538 CCAGCCAGCTACCAGACTCA 61.261 60.000 0.00 0.00 0.00 3.41
58 59 1.135603 CATCTTCGTTGTGCCACCATG 60.136 52.381 0.00 0.00 0.00 3.66
89 122 7.115378 CACTTGCAATGGAAAACATAGAGAAAC 59.885 37.037 0.00 0.00 39.40 2.78
107 160 6.326843 AGAGAAACTCAACCACTAAAGTACCT 59.673 38.462 0.00 0.00 32.06 3.08
109 162 7.440198 AGAAACTCAACCACTAAAGTACCTAC 58.560 38.462 0.00 0.00 0.00 3.18
110 163 6.736110 AACTCAACCACTAAAGTACCTACA 57.264 37.500 0.00 0.00 0.00 2.74
111 164 6.736110 ACTCAACCACTAAAGTACCTACAA 57.264 37.500 0.00 0.00 0.00 2.41
112 165 6.756221 ACTCAACCACTAAAGTACCTACAAG 58.244 40.000 0.00 0.00 0.00 3.16
113 166 6.552350 ACTCAACCACTAAAGTACCTACAAGA 59.448 38.462 0.00 0.00 0.00 3.02
114 167 6.752168 TCAACCACTAAAGTACCTACAAGAC 58.248 40.000 0.00 0.00 0.00 3.01
115 168 6.324512 TCAACCACTAAAGTACCTACAAGACA 59.675 38.462 0.00 0.00 0.00 3.41
116 169 6.930068 ACCACTAAAGTACCTACAAGACAT 57.070 37.500 0.00 0.00 0.00 3.06
117 170 7.312415 ACCACTAAAGTACCTACAAGACATT 57.688 36.000 0.00 0.00 0.00 2.71
118 171 7.742767 ACCACTAAAGTACCTACAAGACATTT 58.257 34.615 0.00 0.00 0.00 2.32
119 172 8.873144 ACCACTAAAGTACCTACAAGACATTTA 58.127 33.333 0.00 0.00 0.00 1.40
120 173 9.367444 CCACTAAAGTACCTACAAGACATTTAG 57.633 37.037 0.00 0.00 35.89 1.85
125 178 9.708092 AAAGTACCTACAAGACATTTAGAAGAC 57.292 33.333 0.00 0.00 0.00 3.01
126 179 7.838884 AGTACCTACAAGACATTTAGAAGACC 58.161 38.462 0.00 0.00 0.00 3.85
127 180 6.681729 ACCTACAAGACATTTAGAAGACCA 57.318 37.500 0.00 0.00 0.00 4.02
128 181 6.702329 ACCTACAAGACATTTAGAAGACCAG 58.298 40.000 0.00 0.00 0.00 4.00
165 218 1.651987 CAATAGTAGGCCACCACGTG 58.348 55.000 9.08 9.08 0.00 4.49
167 220 1.968050 ATAGTAGGCCACCACGTGCC 61.968 60.000 10.91 8.47 32.66 5.01
211 291 2.263895 TCACCCTGGTATAGGCAAGT 57.736 50.000 0.00 0.00 45.89 3.16
212 292 1.837439 TCACCCTGGTATAGGCAAGTG 59.163 52.381 0.00 0.00 45.89 3.16
216 296 1.202533 CCTGGTATAGGCAAGTGGTCG 60.203 57.143 0.00 0.00 40.38 4.79
221 301 0.537188 ATAGGCAAGTGGTCGGTCAG 59.463 55.000 0.00 0.00 0.00 3.51
273 353 3.745458 CACAAAGTCTCAGAAGAAGAGGC 59.255 47.826 0.00 0.00 37.99 4.70
291 371 1.197721 GGCTGTTGAACAAGACGATGG 59.802 52.381 0.00 0.00 0.00 3.51
307 387 1.151679 TGGTTTCCCCAACGATGCA 59.848 52.632 0.00 0.00 41.50 3.96
400 492 3.327404 CCTAGCACACCGGGGGTT 61.327 66.667 9.50 0.00 31.02 4.11
401 493 2.046314 CTAGCACACCGGGGGTTG 60.046 66.667 9.50 0.00 31.02 3.77
430 522 0.107654 CTGATCCGGGGGAGAAACAC 60.108 60.000 0.00 0.00 34.05 3.32
464 556 2.159028 GCAAGATCTGGGAGTAGTGTCC 60.159 54.545 0.00 0.00 35.64 4.02
469 561 1.006043 TCTGGGAGTAGTGTCCAGGAG 59.994 57.143 13.63 0.00 45.89 3.69
470 562 0.041238 TGGGAGTAGTGTCCAGGAGG 59.959 60.000 0.00 0.00 38.52 4.30
471 563 0.335361 GGGAGTAGTGTCCAGGAGGA 59.665 60.000 0.00 0.00 43.21 3.71
524 616 3.326880 GGACCAGGTATTTATGGATCCGT 59.673 47.826 12.14 12.14 39.02 4.69
525 617 4.202430 GGACCAGGTATTTATGGATCCGTT 60.202 45.833 12.82 1.54 39.02 4.44
526 618 5.012354 GGACCAGGTATTTATGGATCCGTTA 59.988 44.000 12.82 0.00 39.02 3.18
527 619 6.464749 GGACCAGGTATTTATGGATCCGTTAA 60.465 42.308 12.82 10.04 39.02 2.01
528 620 6.531021 ACCAGGTATTTATGGATCCGTTAAG 58.469 40.000 12.82 0.00 39.02 1.85
529 621 6.328148 ACCAGGTATTTATGGATCCGTTAAGA 59.672 38.462 12.82 3.60 39.02 2.10
530 622 6.649557 CCAGGTATTTATGGATCCGTTAAGAC 59.350 42.308 18.03 18.03 39.02 3.01
565 818 5.863935 GCAAAGATAAATTAATGGGGCGATC 59.136 40.000 0.00 0.00 0.00 3.69
574 827 1.644437 ATGGGGCGATCCACCATTGA 61.644 55.000 11.10 0.00 39.11 2.57
602 862 3.193691 GGATGAAGATCCGGTCGACATAT 59.806 47.826 18.91 7.06 39.04 1.78
603 863 4.398358 GGATGAAGATCCGGTCGACATATA 59.602 45.833 18.91 0.00 39.04 0.86
604 864 5.067936 GGATGAAGATCCGGTCGACATATAT 59.932 44.000 18.91 4.77 39.04 0.86
605 865 6.262496 GGATGAAGATCCGGTCGACATATATA 59.738 42.308 18.91 0.00 39.04 0.86
609 869 8.188799 TGAAGATCCGGTCGACATATATAATTC 58.811 37.037 18.91 11.33 0.00 2.17
614 874 7.815641 TCCGGTCGACATATATAATTCGTAAA 58.184 34.615 18.91 0.00 33.20 2.01
633 893 2.698855 ACGGAAGAGCAATGCTACAT 57.301 45.000 8.12 0.00 39.88 2.29
666 926 9.807649 AAGAAATGTTATGTGATTGATAAAGGC 57.192 29.630 0.00 0.00 0.00 4.35
667 927 9.193806 AGAAATGTTATGTGATTGATAAAGGCT 57.806 29.630 0.00 0.00 0.00 4.58
668 928 9.807649 GAAATGTTATGTGATTGATAAAGGCTT 57.192 29.630 0.00 0.00 0.00 4.35
671 931 9.632638 ATGTTATGTGATTGATAAAGGCTTACT 57.367 29.630 0.00 0.00 0.00 2.24
676 936 8.492673 TGTGATTGATAAAGGCTTACTAACAG 57.507 34.615 0.00 0.00 0.00 3.16
677 937 8.100791 TGTGATTGATAAAGGCTTACTAACAGT 58.899 33.333 0.00 0.00 0.00 3.55
678 938 9.595823 GTGATTGATAAAGGCTTACTAACAGTA 57.404 33.333 0.00 0.00 0.00 2.74
681 941 8.867112 TTGATAAAGGCTTACTAACAGTATCG 57.133 34.615 0.00 0.00 29.64 2.92
682 942 8.004087 TGATAAAGGCTTACTAACAGTATCGT 57.996 34.615 0.00 0.00 29.64 3.73
683 943 9.123902 TGATAAAGGCTTACTAACAGTATCGTA 57.876 33.333 0.00 0.00 29.64 3.43
684 944 9.609950 GATAAAGGCTTACTAACAGTATCGTAG 57.390 37.037 0.00 0.00 29.64 3.51
685 945 7.636150 AAAGGCTTACTAACAGTATCGTAGA 57.364 36.000 0.00 0.00 45.75 2.59
686 946 7.820578 AAGGCTTACTAACAGTATCGTAGAT 57.179 36.000 0.00 0.00 45.12 1.98
687 947 7.204496 AGGCTTACTAACAGTATCGTAGATG 57.796 40.000 0.00 0.00 45.12 2.90
688 948 6.771749 AGGCTTACTAACAGTATCGTAGATGT 59.228 38.462 0.00 0.00 45.12 3.06
689 949 6.856938 GGCTTACTAACAGTATCGTAGATGTG 59.143 42.308 0.00 0.00 45.12 3.21
690 950 7.255035 GGCTTACTAACAGTATCGTAGATGTGA 60.255 40.741 0.00 0.00 45.12 3.58
691 951 7.587028 GCTTACTAACAGTATCGTAGATGTGAC 59.413 40.741 0.00 0.00 45.12 3.67
692 952 6.374565 ACTAACAGTATCGTAGATGTGACC 57.625 41.667 0.00 0.00 45.12 4.02
693 953 4.650754 AACAGTATCGTAGATGTGACCC 57.349 45.455 0.00 0.00 45.12 4.46
694 954 3.899726 ACAGTATCGTAGATGTGACCCT 58.100 45.455 0.00 0.00 45.12 4.34
695 955 5.045012 ACAGTATCGTAGATGTGACCCTA 57.955 43.478 0.00 0.00 45.12 3.53
696 956 5.443283 ACAGTATCGTAGATGTGACCCTAA 58.557 41.667 0.00 0.00 45.12 2.69
697 957 5.889853 ACAGTATCGTAGATGTGACCCTAAA 59.110 40.000 0.00 0.00 45.12 1.85
698 958 6.379133 ACAGTATCGTAGATGTGACCCTAAAA 59.621 38.462 0.00 0.00 45.12 1.52
699 959 7.093640 ACAGTATCGTAGATGTGACCCTAAAAA 60.094 37.037 0.00 0.00 45.12 1.94
724 984 3.950395 ACAGTATCGTAGGTGTAGGGTTC 59.050 47.826 0.00 0.00 0.00 3.62
730 990 2.353406 CGTAGGTGTAGGGTTCCTGTTG 60.353 54.545 0.00 0.00 34.61 3.33
746 1006 4.165372 TCCTGTTGGTTATATTCCACCTCC 59.835 45.833 0.00 0.00 34.45 4.30
754 1014 0.748450 TATTCCACCTCCGCCGTTAG 59.252 55.000 0.00 0.00 0.00 2.34
782 1042 1.226717 CCGTGCGGTAGAAGCTCTC 60.227 63.158 1.93 0.00 35.28 3.20
837 1097 4.586841 CCTCCTCCAACTCCAAGTATCTAG 59.413 50.000 0.00 0.00 0.00 2.43
846 1106 4.160626 ACTCCAAGTATCTAGTCCAAGCAC 59.839 45.833 0.00 0.00 0.00 4.40
849 1109 3.810310 AGTATCTAGTCCAAGCACAGC 57.190 47.619 0.00 0.00 0.00 4.40
854 1114 0.835971 TAGTCCAAGCACAGCCTCCA 60.836 55.000 0.00 0.00 0.00 3.86
866 1126 2.191513 GCCTCCATCACGCATGCAT 61.192 57.895 19.57 0.00 0.00 3.96
867 1127 1.652563 CCTCCATCACGCATGCATG 59.347 57.895 22.70 22.70 0.00 4.06
877 1137 3.794270 CATGCATGCAGCTTTGCC 58.206 55.556 26.69 0.00 45.94 4.52
891 1153 1.391157 TTTGCCAGCACTTGACCACC 61.391 55.000 0.00 0.00 0.00 4.61
897 1159 1.471287 CAGCACTTGACCACCATCATG 59.529 52.381 0.00 0.00 0.00 3.07
921 1183 3.582714 ATTTAAGCTTGCACTCTTGGC 57.417 42.857 9.86 0.00 0.00 4.52
925 1187 2.253758 GCTTGCACTCTTGGCGTGA 61.254 57.895 0.00 0.00 34.35 4.35
927 1189 0.040958 CTTGCACTCTTGGCGTGAAC 60.041 55.000 0.00 0.00 34.35 3.18
929 1191 0.746204 TGCACTCTTGGCGTGAACAA 60.746 50.000 0.00 0.00 34.35 2.83
935 1197 2.673368 CTCTTGGCGTGAACAATCCTAC 59.327 50.000 0.00 0.00 0.00 3.18
945 1207 5.652518 GTGAACAATCCTACTACCAGACTC 58.347 45.833 0.00 0.00 0.00 3.36
946 1208 5.419471 GTGAACAATCCTACTACCAGACTCT 59.581 44.000 0.00 0.00 0.00 3.24
948 1210 5.459982 ACAATCCTACTACCAGACTCTCT 57.540 43.478 0.00 0.00 0.00 3.10
949 1211 5.442391 ACAATCCTACTACCAGACTCTCTC 58.558 45.833 0.00 0.00 0.00 3.20
951 1213 5.562298 ATCCTACTACCAGACTCTCTCTC 57.438 47.826 0.00 0.00 0.00 3.20
952 1214 4.627015 TCCTACTACCAGACTCTCTCTCT 58.373 47.826 0.00 0.00 0.00 3.10
955 1217 4.216411 ACTACCAGACTCTCTCTCTCAC 57.784 50.000 0.00 0.00 0.00 3.51
959 1221 3.245229 ACCAGACTCTCTCTCTCACACAT 60.245 47.826 0.00 0.00 0.00 3.21
965 1227 4.457603 ACTCTCTCTCTCACACATACACAC 59.542 45.833 0.00 0.00 0.00 3.82
966 1228 4.398319 TCTCTCTCTCACACATACACACA 58.602 43.478 0.00 0.00 0.00 3.72
967 1229 4.216472 TCTCTCTCTCACACATACACACAC 59.784 45.833 0.00 0.00 0.00 3.82
968 1230 3.888930 TCTCTCTCACACATACACACACA 59.111 43.478 0.00 0.00 0.00 3.72
969 1231 4.022849 TCTCTCTCACACATACACACACAG 60.023 45.833 0.00 0.00 0.00 3.66
970 1232 3.888930 TCTCTCACACATACACACACAGA 59.111 43.478 0.00 0.00 0.00 3.41
971 1233 4.022849 TCTCTCACACATACACACACAGAG 60.023 45.833 0.00 0.00 0.00 3.35
972 1234 3.888930 TCTCACACATACACACACAGAGA 59.111 43.478 0.00 0.00 0.00 3.10
973 1235 4.022849 TCTCACACATACACACACAGAGAG 60.023 45.833 0.00 0.00 0.00 3.20
974 1236 3.888930 TCACACATACACACACAGAGAGA 59.111 43.478 0.00 0.00 0.00 3.10
975 1237 4.022849 TCACACATACACACACAGAGAGAG 60.023 45.833 0.00 0.00 0.00 3.20
976 1238 4.022849 CACACATACACACACAGAGAGAGA 60.023 45.833 0.00 0.00 0.00 3.10
1134 1399 2.259818 CTGGACACGAGCGAGCTT 59.740 61.111 0.00 0.00 0.00 3.74
1135 1400 2.049156 TGGACACGAGCGAGCTTG 60.049 61.111 10.58 10.58 0.00 4.01
1136 1401 2.811317 GGACACGAGCGAGCTTGG 60.811 66.667 15.92 7.95 0.00 3.61
1342 1607 4.379243 CCAGCGGCGTCTCAGGTT 62.379 66.667 9.37 0.00 0.00 3.50
1366 1638 9.627395 GTTGGTATATACACATCTCTATCACAC 57.373 37.037 14.70 0.00 0.00 3.82
1438 1717 8.277490 TGAGTGTATCTAGAACTAATTGTCGT 57.723 34.615 0.00 0.00 0.00 4.34
1442 1721 9.570488 GTGTATCTAGAACTAATTGTCGTCTTT 57.430 33.333 0.00 0.00 0.00 2.52
1447 1730 8.304596 TCTAGAACTAATTGTCGTCTTTCATGT 58.695 33.333 0.00 0.00 0.00 3.21
1448 1731 7.121974 AGAACTAATTGTCGTCTTTCATGTG 57.878 36.000 0.00 0.00 0.00 3.21
1449 1732 5.283060 ACTAATTGTCGTCTTTCATGTGC 57.717 39.130 0.00 0.00 0.00 4.57
1450 1733 4.754618 ACTAATTGTCGTCTTTCATGTGCA 59.245 37.500 0.00 0.00 0.00 4.57
1763 2050 2.406616 GCCTTCGTCCCCGTACGTA 61.407 63.158 15.21 0.00 43.31 3.57
1787 2088 0.251386 ACGCCTTCTCCTCTCACTCA 60.251 55.000 0.00 0.00 0.00 3.41
1789 2090 1.555967 GCCTTCTCCTCTCACTCACT 58.444 55.000 0.00 0.00 0.00 3.41
1790 2091 1.476488 GCCTTCTCCTCTCACTCACTC 59.524 57.143 0.00 0.00 0.00 3.51
1791 2092 2.801483 CCTTCTCCTCTCACTCACTCA 58.199 52.381 0.00 0.00 0.00 3.41
1792 2093 2.491693 CCTTCTCCTCTCACTCACTCAC 59.508 54.545 0.00 0.00 0.00 3.51
1793 2094 3.420893 CTTCTCCTCTCACTCACTCACT 58.579 50.000 0.00 0.00 0.00 3.41
1794 2095 3.066291 TCTCCTCTCACTCACTCACTC 57.934 52.381 0.00 0.00 0.00 3.51
1795 2096 2.642311 TCTCCTCTCACTCACTCACTCT 59.358 50.000 0.00 0.00 0.00 3.24
1796 2097 3.009723 CTCCTCTCACTCACTCACTCTC 58.990 54.545 0.00 0.00 0.00 3.20
1797 2098 2.373502 TCCTCTCACTCACTCACTCTCA 59.626 50.000 0.00 0.00 0.00 3.27
1798 2099 2.749076 CCTCTCACTCACTCACTCTCAG 59.251 54.545 0.00 0.00 0.00 3.35
1799 2100 2.158559 TCTCACTCACTCACTCTCAGC 58.841 52.381 0.00 0.00 0.00 4.26
1800 2101 2.161855 CTCACTCACTCACTCTCAGCT 58.838 52.381 0.00 0.00 0.00 4.24
1832 2133 3.315140 TGGTGATCACGGCCGGAA 61.315 61.111 31.76 17.73 0.00 4.30
1833 2134 2.511600 GGTGATCACGGCCGGAAG 60.512 66.667 31.76 18.96 0.00 3.46
1836 2137 3.195698 GATCACGGCCGGAAGTGC 61.196 66.667 31.76 9.71 38.19 4.40
1837 2138 4.778143 ATCACGGCCGGAAGTGCC 62.778 66.667 31.76 7.16 41.96 5.01
1840 2141 3.081409 ACGGCCGGAAGTGCCTAT 61.081 61.111 31.76 0.00 42.82 2.57
1841 2142 1.759299 ACGGCCGGAAGTGCCTATA 60.759 57.895 31.76 0.00 42.82 1.31
1842 2143 1.119574 ACGGCCGGAAGTGCCTATAT 61.120 55.000 31.76 0.00 42.82 0.86
1843 2144 0.892755 CGGCCGGAAGTGCCTATATA 59.107 55.000 20.10 0.00 42.82 0.86
1844 2145 1.403780 CGGCCGGAAGTGCCTATATAC 60.404 57.143 20.10 0.00 42.82 1.47
1845 2146 1.900486 GGCCGGAAGTGCCTATATACT 59.100 52.381 5.05 0.00 42.07 2.12
1846 2147 3.094572 GGCCGGAAGTGCCTATATACTA 58.905 50.000 5.05 0.00 42.07 1.82
1847 2148 3.705072 GGCCGGAAGTGCCTATATACTAT 59.295 47.826 5.05 0.00 42.07 2.12
1868 2183 6.861572 ACTATGTATATGATGGTTTGTCGTCG 59.138 38.462 0.00 0.00 0.00 5.12
1874 2189 4.914312 TGATGGTTTGTCGTCGATTAAC 57.086 40.909 0.00 6.08 0.00 2.01
1875 2190 4.562082 TGATGGTTTGTCGTCGATTAACT 58.438 39.130 16.80 4.18 0.00 2.24
1876 2191 4.387559 TGATGGTTTGTCGTCGATTAACTG 59.612 41.667 16.80 0.00 0.00 3.16
1877 2192 2.477375 TGGTTTGTCGTCGATTAACTGC 59.523 45.455 16.80 6.90 0.00 4.40
1878 2193 2.471749 GGTTTGTCGTCGATTAACTGCG 60.472 50.000 16.80 0.00 0.00 5.18
1934 2249 4.947147 TTCGTGGTGCACCTGGCC 62.947 66.667 34.75 18.95 43.89 5.36
2031 2346 1.336148 CCTGGAAGCAACACGTACGTA 60.336 52.381 22.34 0.59 0.00 3.57
2044 2359 0.532115 GTACGTACGTGGGACCCATT 59.468 55.000 30.25 9.75 35.28 3.16
2045 2360 1.748493 GTACGTACGTGGGACCCATTA 59.252 52.381 30.25 8.64 35.28 1.90
2047 2362 1.832998 ACGTACGTGGGACCCATTAAT 59.167 47.619 22.14 5.26 35.28 1.40
2051 2366 1.005450 ACGTGGGACCCATTAATTGCT 59.995 47.619 18.51 0.00 35.28 3.91
2052 2367 1.405105 CGTGGGACCCATTAATTGCTG 59.595 52.381 18.51 0.00 35.28 4.41
2054 2369 2.831526 GTGGGACCCATTAATTGCTGTT 59.168 45.455 18.51 0.00 35.28 3.16
2055 2370 2.830923 TGGGACCCATTAATTGCTGTTG 59.169 45.455 9.95 0.00 0.00 3.33
2057 2372 3.260632 GGGACCCATTAATTGCTGTTGTT 59.739 43.478 5.33 0.00 0.00 2.83
2058 2373 4.464597 GGGACCCATTAATTGCTGTTGTTA 59.535 41.667 5.33 0.00 0.00 2.41
2059 2374 5.394115 GGGACCCATTAATTGCTGTTGTTAG 60.394 44.000 5.33 0.00 0.00 2.34
2060 2375 5.417580 GGACCCATTAATTGCTGTTGTTAGA 59.582 40.000 0.00 0.00 0.00 2.10
2061 2376 6.071616 GGACCCATTAATTGCTGTTGTTAGAA 60.072 38.462 0.00 0.00 0.00 2.10
2062 2377 7.296628 ACCCATTAATTGCTGTTGTTAGAAA 57.703 32.000 0.00 0.00 0.00 2.52
2063 2378 7.731054 ACCCATTAATTGCTGTTGTTAGAAAA 58.269 30.769 0.00 0.00 0.00 2.29
2097 2575 7.747155 TTAAAATAAAGTGTCCCGTTGATGA 57.253 32.000 0.00 0.00 0.00 2.92
2098 2576 6.834168 AAAATAAAGTGTCCCGTTGATGAT 57.166 33.333 0.00 0.00 0.00 2.45
2100 2578 3.703001 AAAGTGTCCCGTTGATGATCT 57.297 42.857 0.00 0.00 0.00 2.75
2101 2579 2.680312 AGTGTCCCGTTGATGATCTG 57.320 50.000 0.00 0.00 0.00 2.90
2102 2580 1.009829 GTGTCCCGTTGATGATCTGC 58.990 55.000 0.00 0.00 0.00 4.26
2103 2581 0.612744 TGTCCCGTTGATGATCTGCA 59.387 50.000 0.00 0.00 0.00 4.41
2129 2607 2.041265 ATCTTCTGGGTCGGGCCT 59.959 61.111 0.84 0.00 37.43 5.19
2204 2682 0.668706 CTGTGGTGAAGGAGTCGCTG 60.669 60.000 0.00 0.00 36.92 5.18
2206 2684 2.435059 GGTGAAGGAGTCGCTGGC 60.435 66.667 0.00 0.00 36.92 4.85
2207 2685 2.811317 GTGAAGGAGTCGCTGGCG 60.811 66.667 8.80 8.80 41.35 5.69
2208 2686 4.069232 TGAAGGAGTCGCTGGCGG 62.069 66.667 14.94 0.00 40.25 6.13
2254 2732 0.824109 TCCACCGCTTGAAGATCGAT 59.176 50.000 0.00 0.00 0.00 3.59
2255 2733 1.202417 TCCACCGCTTGAAGATCGATC 60.202 52.381 17.91 17.91 0.00 3.69
2256 2734 0.848942 CACCGCTTGAAGATCGATCG 59.151 55.000 19.33 9.36 0.00 3.69
2257 2735 0.456221 ACCGCTTGAAGATCGATCGT 59.544 50.000 19.33 16.72 0.00 3.73
2258 2736 0.848942 CCGCTTGAAGATCGATCGTG 59.151 55.000 18.77 10.68 0.00 4.35
2259 2737 0.848942 CGCTTGAAGATCGATCGTGG 59.151 55.000 18.77 9.34 0.00 4.94
2260 2738 1.533965 CGCTTGAAGATCGATCGTGGA 60.534 52.381 18.77 5.91 0.00 4.02
2261 2739 2.123342 GCTTGAAGATCGATCGTGGAG 58.877 52.381 18.77 15.25 0.00 3.86
2262 2740 2.223595 GCTTGAAGATCGATCGTGGAGA 60.224 50.000 18.77 4.15 0.00 3.71
2263 2741 3.551863 GCTTGAAGATCGATCGTGGAGAT 60.552 47.826 18.77 0.00 43.51 2.75
2278 2756 1.035923 GAGATCGAGGAGACCATGCA 58.964 55.000 0.00 0.00 0.00 3.96
2279 2757 1.617850 GAGATCGAGGAGACCATGCAT 59.382 52.381 0.00 0.00 0.00 3.96
2280 2758 1.343789 AGATCGAGGAGACCATGCATG 59.656 52.381 20.19 20.19 0.00 4.06
2299 2777 2.837337 GCGCATGCGTATAACAGTAG 57.163 50.000 37.54 9.12 42.09 2.57
2340 2818 1.803453 AAGTGGGTCCCATGCCATGT 61.803 55.000 15.49 0.00 35.28 3.21
2346 2824 3.520862 CCCATGCCATGTCGGTGC 61.521 66.667 3.63 0.00 36.97 5.01
2357 2835 4.680237 TCGGTGCCACTTCAGCCG 62.680 66.667 0.00 0.00 43.32 5.52
2364 2842 0.101759 GCCACTTCAGCCGTATACGA 59.898 55.000 26.37 3.38 43.02 3.43
2368 2846 1.681793 ACTTCAGCCGTATACGATGCT 59.318 47.619 26.37 22.41 43.02 3.79
2370 2848 3.506455 ACTTCAGCCGTATACGATGCTAT 59.494 43.478 26.37 10.36 43.02 2.97
2371 2849 4.698780 ACTTCAGCCGTATACGATGCTATA 59.301 41.667 26.37 14.61 43.02 1.31
2372 2850 5.357314 ACTTCAGCCGTATACGATGCTATAT 59.643 40.000 26.37 10.35 43.02 0.86
2373 2851 5.169836 TCAGCCGTATACGATGCTATATG 57.830 43.478 26.37 14.82 43.02 1.78
2374 2852 4.638865 TCAGCCGTATACGATGCTATATGT 59.361 41.667 26.37 2.73 43.02 2.29
2379 2857 5.220529 CCGTATACGATGCTATATGTGTCGA 60.221 44.000 26.37 0.00 43.02 4.20
2381 2859 2.917363 ACGATGCTATATGTGTCGACG 58.083 47.619 11.62 0.00 36.28 5.12
2409 2887 3.874706 ACGTCTACGAATGAGATTAGCG 58.125 45.455 9.86 0.00 43.02 4.26
2411 2889 2.652642 GTCTACGAATGAGATTAGCGCG 59.347 50.000 0.00 0.00 0.00 6.86
2412 2890 2.289820 TCTACGAATGAGATTAGCGCGT 59.710 45.455 8.43 0.00 0.00 6.01
2414 2892 1.852895 ACGAATGAGATTAGCGCGTTC 59.147 47.619 8.43 0.00 38.48 3.95
2430 2921 2.661979 GCGTTCGTGCCAAGTTTTAGAG 60.662 50.000 0.00 0.00 0.00 2.43
2431 2922 2.661979 CGTTCGTGCCAAGTTTTAGAGC 60.662 50.000 0.00 0.00 0.00 4.09
2433 2924 0.165944 CGTGCCAAGTTTTAGAGCCG 59.834 55.000 0.00 0.00 0.00 5.52
2441 2932 3.202829 AGTTTTAGAGCCGGTTTGACA 57.797 42.857 1.90 0.00 0.00 3.58
2457 2948 8.434661 CCGGTTTGACATATTTTTCAAATTCAG 58.565 33.333 0.00 0.00 42.24 3.02
2471 2962 9.950680 TTTTCAAATTCAGACAATAGAGTGAAC 57.049 29.630 0.00 0.00 31.94 3.18
2474 2965 8.939929 TCAAATTCAGACAATAGAGTGAACATC 58.060 33.333 0.00 0.00 31.94 3.06
2475 2966 7.856145 AATTCAGACAATAGAGTGAACATCC 57.144 36.000 0.00 0.00 31.94 3.51
2478 2969 7.660030 TCAGACAATAGAGTGAACATCCATA 57.340 36.000 0.00 0.00 0.00 2.74
2480 2971 8.708378 TCAGACAATAGAGTGAACATCCATAAT 58.292 33.333 0.00 0.00 0.00 1.28
2510 3001 8.958119 TTAATCATCACTGGTGTATTTACCTC 57.042 34.615 0.53 0.00 41.43 3.85
2539 3030 9.834628 TTTCATCCGTGTAATGAGAATAAAAAC 57.165 29.630 0.00 0.00 34.76 2.43
2540 3031 8.786826 TCATCCGTGTAATGAGAATAAAAACT 57.213 30.769 0.00 0.00 0.00 2.66
2567 3065 5.160386 TGGTCCCTTTTTACTACCTCTCTT 58.840 41.667 0.00 0.00 0.00 2.85
2578 3076 0.984995 ACCTCTCTTGGCCCTGTAAC 59.015 55.000 0.00 0.00 0.00 2.50
2643 3141 5.675444 GTCTTGATGTGTGTTGTTCGTTAAC 59.325 40.000 0.00 0.00 36.07 2.01
2645 3143 5.743026 TGATGTGTGTTGTTCGTTAACAT 57.257 34.783 6.39 0.00 44.85 2.71
2647 3145 4.948608 TGTGTGTTGTTCGTTAACATGT 57.051 36.364 6.39 0.00 44.85 3.21
2649 3147 4.392138 TGTGTGTTGTTCGTTAACATGTGA 59.608 37.500 0.00 0.00 44.85 3.58
2657 3155 5.405269 TGTTCGTTAACATGTGAGATCACTG 59.595 40.000 13.74 11.27 42.57 3.66
2658 3156 3.926527 TCGTTAACATGTGAGATCACTGC 59.073 43.478 13.74 0.00 46.55 4.40
2664 3162 0.036671 TGTGAGATCACTGCTGCAGG 60.037 55.000 31.00 20.25 46.55 4.85
2711 3209 4.094442 CCTCTGACATAGTTTTAAACCGCC 59.906 45.833 4.01 0.00 0.00 6.13
2717 3215 5.237048 ACATAGTTTTAAACCGCCGTCTTA 58.763 37.500 4.01 0.00 0.00 2.10
2730 3228 1.732259 CCGTCTTATGTGAAGGTGTGC 59.268 52.381 0.00 0.00 32.25 4.57
2739 3237 0.907704 TGAAGGTGTGCGATAGGGGT 60.908 55.000 0.00 0.00 0.00 4.95
2740 3238 0.179081 GAAGGTGTGCGATAGGGGTC 60.179 60.000 0.00 0.00 0.00 4.46
2755 3254 2.668550 GTCCACCGCACAAGACCC 60.669 66.667 0.00 0.00 0.00 4.46
2759 3258 1.961277 CACCGCACAAGACCCAGAC 60.961 63.158 0.00 0.00 0.00 3.51
2783 3282 1.144565 CGTCTGCGATTGCTCCTCAG 61.145 60.000 6.47 0.00 43.34 3.35
2785 3284 0.174389 TCTGCGATTGCTCCTCAGAC 59.826 55.000 6.47 0.00 43.34 3.51
2796 3295 0.673985 TCCTCAGACCACACACGAAG 59.326 55.000 0.00 0.00 0.00 3.79
2836 3335 1.181786 GATCGGGAGAGCTATCTGGG 58.818 60.000 8.50 0.00 45.48 4.45
2852 3351 2.497675 TCTGGGACAAGCTGTATGAGAC 59.502 50.000 0.00 0.00 38.70 3.36
2853 3352 2.499289 CTGGGACAAGCTGTATGAGACT 59.501 50.000 0.00 0.00 38.70 3.24
2860 3359 5.551233 ACAAGCTGTATGAGACTTGCTAAA 58.449 37.500 0.00 0.00 38.42 1.85
2870 3369 3.412386 AGACTTGCTAAACATCCCACAC 58.588 45.455 0.00 0.00 0.00 3.82
2882 3381 5.543507 ACATCCCACACAATTTGCTTAAA 57.456 34.783 0.00 0.00 0.00 1.52
2883 3382 5.296748 ACATCCCACACAATTTGCTTAAAC 58.703 37.500 0.00 0.00 0.00 2.01
2919 3418 7.439356 GCATTAGTATGGTATATCATGCACGAT 59.561 37.037 15.38 0.00 36.59 3.73
2932 3431 0.796870 GCACGATGCGGCCTAAAAAC 60.797 55.000 0.00 0.00 31.71 2.43
2933 3432 0.519519 CACGATGCGGCCTAAAAACA 59.480 50.000 0.00 0.00 0.00 2.83
2951 3450 1.134788 ACACTTGTGCGATAGGGCTAC 60.135 52.381 0.10 0.00 0.00 3.58
2969 3468 3.440872 GCTACCTATCAGACTATCACCCG 59.559 52.174 0.00 0.00 0.00 5.28
2982 3481 2.008697 CACCCGCGCTTTTCAAACG 61.009 57.895 5.56 0.00 0.00 3.60
3013 3512 2.916716 GGCAACATATCGCAAACAGTTG 59.083 45.455 0.00 0.00 39.32 3.16
3051 3551 1.672363 GCATCACGATCTGCAAATCCA 59.328 47.619 0.00 0.00 38.28 3.41
3059 3559 4.129380 CGATCTGCAAATCCACCAGATTA 58.871 43.478 0.00 0.00 44.75 1.75
3072 3572 4.097418 CACCAGATTACCCTCCCTATAGG 58.903 52.174 12.27 12.27 36.30 2.57
3097 3597 1.515081 TTAGCGTGTAACAAGGGCAC 58.485 50.000 0.00 0.00 35.74 5.01
3099 3599 0.602905 AGCGTGTAACAAGGGCACTC 60.603 55.000 0.00 0.00 35.74 3.51
3112 3612 0.523966 GGCACTCCCGAGAGATATCG 59.476 60.000 0.00 0.00 43.39 2.92
3127 3627 1.771565 TATCGGGACCGTGAGATGTT 58.228 50.000 10.90 0.00 40.74 2.71
3138 3638 6.255887 GGACCGTGAGATGTTAAGTTAATCAG 59.744 42.308 0.00 0.00 0.00 2.90
3144 3644 5.978814 AGATGTTAAGTTAATCAGCGGAGT 58.021 37.500 0.00 0.00 0.00 3.85
3178 3678 6.426328 GGTCAAATGATAGCGAGAATTCAGAT 59.574 38.462 8.44 2.58 0.00 2.90
3179 3679 7.289395 GTCAAATGATAGCGAGAATTCAGATG 58.711 38.462 8.44 0.00 0.00 2.90
3183 3683 6.594284 TGATAGCGAGAATTCAGATGTTTG 57.406 37.500 8.44 0.00 0.00 2.93
3184 3684 5.525012 TGATAGCGAGAATTCAGATGTTTGG 59.475 40.000 8.44 0.00 0.00 3.28
3185 3685 3.012518 AGCGAGAATTCAGATGTTTGGG 58.987 45.455 8.44 0.00 0.00 4.12
3186 3686 2.478539 GCGAGAATTCAGATGTTTGGGC 60.479 50.000 8.44 0.00 0.00 5.36
3187 3687 2.098117 CGAGAATTCAGATGTTTGGGCC 59.902 50.000 8.44 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.829333 ATGAGTCTGGTAGCTGGCTG 59.171 55.000 10.85 0.00 0.00 4.85
22 23 1.118838 GATGAGTCTGGTAGCTGGCT 58.881 55.000 5.55 5.55 0.00 4.75
23 24 1.118838 AGATGAGTCTGGTAGCTGGC 58.881 55.000 0.00 0.00 32.13 4.85
24 25 2.223688 CGAAGATGAGTCTGGTAGCTGG 60.224 54.545 0.00 0.00 34.13 4.85
25 26 2.425312 ACGAAGATGAGTCTGGTAGCTG 59.575 50.000 0.00 0.00 34.13 4.24
26 27 2.729194 ACGAAGATGAGTCTGGTAGCT 58.271 47.619 0.00 0.00 34.13 3.32
27 28 3.182967 CAACGAAGATGAGTCTGGTAGC 58.817 50.000 0.00 0.00 34.13 3.58
28 29 4.169508 CACAACGAAGATGAGTCTGGTAG 58.830 47.826 0.00 0.00 34.13 3.18
29 30 3.614150 GCACAACGAAGATGAGTCTGGTA 60.614 47.826 0.00 0.00 34.13 3.25
30 31 2.868044 GCACAACGAAGATGAGTCTGGT 60.868 50.000 0.00 0.00 34.13 4.00
34 35 1.461127 GTGGCACAACGAAGATGAGTC 59.539 52.381 13.86 0.00 44.16 3.36
58 59 2.802247 GTTTTCCATTGCAAGTGAAGCC 59.198 45.455 4.94 1.45 0.00 4.35
89 122 6.867293 GTCTTGTAGGTACTTTAGTGGTTGAG 59.133 42.308 0.00 0.00 41.75 3.02
107 160 6.497259 AGGTCTGGTCTTCTAAATGTCTTGTA 59.503 38.462 0.00 0.00 0.00 2.41
109 162 5.799213 AGGTCTGGTCTTCTAAATGTCTTG 58.201 41.667 0.00 0.00 0.00 3.02
110 163 5.544176 TGAGGTCTGGTCTTCTAAATGTCTT 59.456 40.000 0.00 0.00 0.00 3.01
111 164 5.087323 TGAGGTCTGGTCTTCTAAATGTCT 58.913 41.667 0.00 0.00 0.00 3.41
112 165 5.407407 TGAGGTCTGGTCTTCTAAATGTC 57.593 43.478 0.00 0.00 0.00 3.06
113 166 6.380079 AATGAGGTCTGGTCTTCTAAATGT 57.620 37.500 0.00 0.00 0.00 2.71
114 167 8.669243 GTTAAATGAGGTCTGGTCTTCTAAATG 58.331 37.037 0.00 0.00 0.00 2.32
115 168 7.829706 GGTTAAATGAGGTCTGGTCTTCTAAAT 59.170 37.037 0.00 0.00 0.00 1.40
116 169 7.166167 GGTTAAATGAGGTCTGGTCTTCTAAA 58.834 38.462 0.00 0.00 0.00 1.85
117 170 6.296259 GGGTTAAATGAGGTCTGGTCTTCTAA 60.296 42.308 0.00 0.00 0.00 2.10
118 171 5.189145 GGGTTAAATGAGGTCTGGTCTTCTA 59.811 44.000 0.00 0.00 0.00 2.10
119 172 4.019231 GGGTTAAATGAGGTCTGGTCTTCT 60.019 45.833 0.00 0.00 0.00 2.85
120 173 4.262617 GGGTTAAATGAGGTCTGGTCTTC 58.737 47.826 0.00 0.00 0.00 2.87
121 174 3.307480 CGGGTTAAATGAGGTCTGGTCTT 60.307 47.826 0.00 0.00 0.00 3.01
122 175 2.236395 CGGGTTAAATGAGGTCTGGTCT 59.764 50.000 0.00 0.00 0.00 3.85
123 176 2.629051 CGGGTTAAATGAGGTCTGGTC 58.371 52.381 0.00 0.00 0.00 4.02
124 177 1.339727 GCGGGTTAAATGAGGTCTGGT 60.340 52.381 0.00 0.00 0.00 4.00
125 178 1.379527 GCGGGTTAAATGAGGTCTGG 58.620 55.000 0.00 0.00 0.00 3.86
126 179 1.006832 CGCGGGTTAAATGAGGTCTG 58.993 55.000 0.00 0.00 0.00 3.51
127 180 0.743345 GCGCGGGTTAAATGAGGTCT 60.743 55.000 8.83 0.00 0.00 3.85
128 181 1.022451 TGCGCGGGTTAAATGAGGTC 61.022 55.000 8.83 0.00 0.00 3.85
167 220 3.502979 CCCCATTTTTGCCAATCTTTGTG 59.497 43.478 0.00 0.00 0.00 3.33
171 224 1.704070 TGCCCCATTTTTGCCAATCTT 59.296 42.857 0.00 0.00 0.00 2.40
200 269 1.479323 TGACCGACCACTTGCCTATAC 59.521 52.381 0.00 0.00 0.00 1.47
211 291 1.092348 CTCACGATACTGACCGACCA 58.908 55.000 0.00 0.00 0.00 4.02
212 292 1.063764 GTCTCACGATACTGACCGACC 59.936 57.143 0.00 0.00 0.00 4.79
216 296 2.735762 GCTTGGTCTCACGATACTGACC 60.736 54.545 0.00 0.00 46.53 4.02
221 301 0.454600 TCGGCTTGGTCTCACGATAC 59.545 55.000 0.00 0.00 0.00 2.24
273 353 4.527564 GAAACCATCGTCTTGTTCAACAG 58.472 43.478 0.00 0.00 0.00 3.16
291 371 0.887933 ATGTGCATCGTTGGGGAAAC 59.112 50.000 0.00 0.00 35.25 2.78
307 387 1.733041 CGTCGGTGTTGCTCGATGT 60.733 57.895 0.00 0.00 37.55 3.06
382 474 3.857521 AACCCCCGGTGTGCTAGGA 62.858 63.158 0.00 0.00 35.34 2.94
410 502 1.153147 GTTTCTCCCCCGGATCAGC 60.153 63.158 0.73 0.00 0.00 4.26
430 522 3.604202 CTTGCGCCGCTACGTACG 61.604 66.667 15.01 15.01 34.88 3.67
464 556 0.105964 TCTTCTCCCGGATCCTCCTG 60.106 60.000 10.75 0.00 33.30 3.86
469 561 2.700897 TCTCAAATCTTCTCCCGGATCC 59.299 50.000 0.73 0.00 0.00 3.36
470 562 4.562552 GGATCTCAAATCTTCTCCCGGATC 60.563 50.000 0.73 0.00 0.00 3.36
471 563 3.326297 GGATCTCAAATCTTCTCCCGGAT 59.674 47.826 0.73 0.00 0.00 4.18
474 566 3.827008 TGGATCTCAAATCTTCTCCCG 57.173 47.619 0.00 0.00 0.00 5.14
516 608 7.709613 GCTTATTCTTAAGTCTTAACGGATCCA 59.290 37.037 13.41 0.00 37.68 3.41
548 640 3.117474 TGGTGGATCGCCCCATTAATTTA 60.117 43.478 2.97 0.00 38.66 1.40
602 862 7.517734 GCATTGCTCTTCCGTTTACGAATTATA 60.518 37.037 3.46 0.00 43.02 0.98
603 863 6.715464 CATTGCTCTTCCGTTTACGAATTAT 58.285 36.000 3.46 0.00 43.02 1.28
604 864 5.446741 GCATTGCTCTTCCGTTTACGAATTA 60.447 40.000 3.46 0.00 43.02 1.40
605 865 4.671766 GCATTGCTCTTCCGTTTACGAATT 60.672 41.667 3.46 0.00 43.02 2.17
609 869 1.732259 AGCATTGCTCTTCCGTTTACG 59.268 47.619 5.03 0.00 30.62 3.18
614 874 2.169352 AGATGTAGCATTGCTCTTCCGT 59.831 45.455 15.81 3.37 40.44 4.69
633 893 9.863845 TCAATCACATAACATTTCTTACGTAGA 57.136 29.630 0.00 0.00 0.00 2.59
658 918 9.609950 CTACGATACTGTTAGTAAGCCTTTATC 57.390 37.037 0.00 0.00 33.89 1.75
661 921 7.636150 TCTACGATACTGTTAGTAAGCCTTT 57.364 36.000 0.00 0.00 33.89 3.11
662 922 7.284944 ACATCTACGATACTGTTAGTAAGCCTT 59.715 37.037 0.00 0.00 33.89 4.35
664 924 6.856938 CACATCTACGATACTGTTAGTAAGCC 59.143 42.308 0.00 0.00 33.89 4.35
665 925 7.587028 GTCACATCTACGATACTGTTAGTAAGC 59.413 40.741 0.00 0.00 33.89 3.09
666 926 8.068977 GGTCACATCTACGATACTGTTAGTAAG 58.931 40.741 0.00 0.00 33.89 2.34
667 927 7.012704 GGGTCACATCTACGATACTGTTAGTAA 59.987 40.741 0.00 0.00 33.89 2.24
668 928 6.484643 GGGTCACATCTACGATACTGTTAGTA 59.515 42.308 0.00 0.00 34.82 1.82
669 929 5.298777 GGGTCACATCTACGATACTGTTAGT 59.701 44.000 0.00 0.00 0.00 2.24
670 930 5.531659 AGGGTCACATCTACGATACTGTTAG 59.468 44.000 0.00 0.00 0.00 2.34
671 931 5.443283 AGGGTCACATCTACGATACTGTTA 58.557 41.667 0.00 0.00 0.00 2.41
672 932 4.279145 AGGGTCACATCTACGATACTGTT 58.721 43.478 0.00 0.00 0.00 3.16
673 933 3.899726 AGGGTCACATCTACGATACTGT 58.100 45.455 0.00 0.00 0.00 3.55
674 934 6.387041 TTTAGGGTCACATCTACGATACTG 57.613 41.667 0.00 0.00 0.00 2.74
675 935 7.414222 TTTTTAGGGTCACATCTACGATACT 57.586 36.000 0.00 0.00 0.00 2.12
698 958 5.246883 ACCCTACACCTACGATACTGTTTTT 59.753 40.000 0.00 0.00 0.00 1.94
699 959 4.774200 ACCCTACACCTACGATACTGTTTT 59.226 41.667 0.00 0.00 0.00 2.43
700 960 4.347607 ACCCTACACCTACGATACTGTTT 58.652 43.478 0.00 0.00 0.00 2.83
707 967 2.292061 ACAGGAACCCTACACCTACGAT 60.292 50.000 0.00 0.00 32.35 3.73
724 984 4.461198 GGAGGTGGAATATAACCAACAGG 58.539 47.826 16.02 0.00 46.41 4.00
730 990 1.607251 CGGCGGAGGTGGAATATAACC 60.607 57.143 0.00 0.00 36.66 2.85
765 1025 1.583967 CGAGAGCTTCTACCGCACG 60.584 63.158 0.00 0.00 0.00 5.34
770 1030 1.751924 ACATGTCCGAGAGCTTCTACC 59.248 52.381 0.00 0.00 0.00 3.18
782 1042 3.889538 TGGAATCTACTCCTACATGTCCG 59.110 47.826 0.00 0.00 36.35 4.79
837 1097 1.001641 ATGGAGGCTGTGCTTGGAC 60.002 57.895 0.00 0.00 0.00 4.02
846 1106 2.831366 GCATGCGTGATGGAGGCTG 61.831 63.158 10.93 0.00 42.90 4.85
849 1109 1.652563 CATGCATGCGTGATGGAGG 59.347 57.895 31.95 5.40 35.59 4.30
877 1137 1.471287 CATGATGGTGGTCAAGTGCTG 59.529 52.381 0.00 0.00 0.00 4.41
891 1153 4.980434 GTGCAAGCTTAAATAGGCATGATG 59.020 41.667 9.74 0.00 29.97 3.07
897 1159 4.439289 CCAAGAGTGCAAGCTTAAATAGGC 60.439 45.833 0.00 0.00 0.00 3.93
921 1183 4.158025 AGTCTGGTAGTAGGATTGTTCACG 59.842 45.833 0.00 0.00 0.00 4.35
925 1187 5.833340 AGAGAGTCTGGTAGTAGGATTGTT 58.167 41.667 0.00 0.00 0.00 2.83
927 1189 5.690865 AGAGAGAGTCTGGTAGTAGGATTG 58.309 45.833 0.00 0.00 32.57 2.67
929 1191 5.224441 AGAGAGAGAGTCTGGTAGTAGGAT 58.776 45.833 0.00 0.00 34.71 3.24
935 1197 3.938963 GTGTGAGAGAGAGAGTCTGGTAG 59.061 52.174 0.00 0.00 34.71 3.18
945 1207 4.022849 TGTGTGTGTATGTGTGAGAGAGAG 60.023 45.833 0.00 0.00 0.00 3.20
946 1208 3.888930 TGTGTGTGTATGTGTGAGAGAGA 59.111 43.478 0.00 0.00 0.00 3.10
948 1210 3.888930 TCTGTGTGTGTATGTGTGAGAGA 59.111 43.478 0.00 0.00 0.00 3.10
949 1211 4.022849 TCTCTGTGTGTGTATGTGTGAGAG 60.023 45.833 0.00 0.00 0.00 3.20
951 1213 4.022849 TCTCTCTGTGTGTGTATGTGTGAG 60.023 45.833 0.00 0.00 0.00 3.51
952 1214 3.888930 TCTCTCTGTGTGTGTATGTGTGA 59.111 43.478 0.00 0.00 0.00 3.58
955 1217 4.380339 CCTCTCTCTCTGTGTGTGTATGTG 60.380 50.000 0.00 0.00 0.00 3.21
959 1221 3.510531 ACCTCTCTCTCTGTGTGTGTA 57.489 47.619 0.00 0.00 0.00 2.90
965 1227 2.028567 GGTTGGAACCTCTCTCTCTGTG 60.029 54.545 0.98 0.00 45.75 3.66
966 1228 2.252714 GGTTGGAACCTCTCTCTCTGT 58.747 52.381 0.98 0.00 45.75 3.41
1006 1268 2.279517 GGCCGCTATGGTCGTCTG 60.280 66.667 0.00 0.00 41.21 3.51
1134 1399 2.524640 TACAGGGACCACGTGCCA 60.525 61.111 10.91 0.00 46.69 4.92
1135 1400 2.047560 GTACAGGGACCACGTGCC 60.048 66.667 10.91 6.87 44.57 5.01
1136 1401 2.047560 GGTACAGGGACCACGTGC 60.048 66.667 10.91 0.00 39.51 5.34
1342 1607 7.947890 TGGTGTGATAGAGATGTGTATATACCA 59.052 37.037 10.38 8.20 0.00 3.25
1366 1638 5.982890 AATTATGGGCGGAGAAAATATGG 57.017 39.130 0.00 0.00 0.00 2.74
1371 1643 5.258051 ACAAGTAATTATGGGCGGAGAAAA 58.742 37.500 0.00 0.00 0.00 2.29
1449 1732 2.185867 GCCCACCTGCATTGCATG 59.814 61.111 12.53 12.09 38.13 4.06
1450 1733 2.284039 TGCCCACCTGCATTGCAT 60.284 55.556 12.53 0.00 38.13 3.96
1577 1864 2.555199 CTTCATGATCCCCTTGACGAC 58.445 52.381 0.00 0.00 0.00 4.34
1763 2050 0.968393 GAGAGGAGAAGGCGTCTGGT 60.968 60.000 7.92 0.00 36.41 4.00
1787 2088 2.297701 GCTAGCTAGCTGAGAGTGAGT 58.702 52.381 33.71 0.00 45.62 3.41
1841 2142 9.856488 GACGACAAACCATCATATACATAGTAT 57.144 33.333 0.00 0.00 0.00 2.12
1842 2143 8.019094 CGACGACAAACCATCATATACATAGTA 58.981 37.037 0.00 0.00 0.00 1.82
1843 2144 6.861572 CGACGACAAACCATCATATACATAGT 59.138 38.462 0.00 0.00 0.00 2.12
1844 2145 7.081976 TCGACGACAAACCATCATATACATAG 58.918 38.462 0.00 0.00 0.00 2.23
1845 2146 6.972722 TCGACGACAAACCATCATATACATA 58.027 36.000 0.00 0.00 0.00 2.29
1846 2147 5.838529 TCGACGACAAACCATCATATACAT 58.161 37.500 0.00 0.00 0.00 2.29
1847 2148 5.251601 TCGACGACAAACCATCATATACA 57.748 39.130 0.00 0.00 0.00 2.29
1858 2173 2.154389 ACGCAGTTAATCGACGACAAAC 59.846 45.455 13.56 13.56 37.78 2.93
1868 2183 0.097674 CCAGCTGCACGCAGTTAATC 59.902 55.000 19.56 3.44 41.61 1.75
2007 2322 1.021968 ACGTGTTGCTTCCAGGTTTC 58.978 50.000 0.00 0.00 0.00 2.78
2031 2346 1.005450 AGCAATTAATGGGTCCCACGT 59.995 47.619 14.57 6.99 35.80 4.49
2066 2544 8.575649 ACGGGACACTTTATTTTAATCTCATT 57.424 30.769 0.00 0.00 0.00 2.57
2067 2545 8.458843 CAACGGGACACTTTATTTTAATCTCAT 58.541 33.333 0.00 0.00 0.00 2.90
2070 2548 7.989416 TCAACGGGACACTTTATTTTAATCT 57.011 32.000 0.00 0.00 0.00 2.40
2071 2549 8.455682 TCATCAACGGGACACTTTATTTTAATC 58.544 33.333 0.00 0.00 0.00 1.75
2076 2554 6.094048 CAGATCATCAACGGGACACTTTATTT 59.906 38.462 0.00 0.00 0.00 1.40
2078 2556 5.118990 CAGATCATCAACGGGACACTTTAT 58.881 41.667 0.00 0.00 0.00 1.40
2086 2564 1.957668 CATGCAGATCATCAACGGGA 58.042 50.000 0.00 0.00 31.79 5.14
2087 2565 0.309922 GCATGCAGATCATCAACGGG 59.690 55.000 14.21 0.00 31.79 5.28
2097 2575 2.172930 AGAAGATCCACTGCATGCAGAT 59.827 45.455 45.50 31.75 46.30 2.90
2098 2576 1.558294 AGAAGATCCACTGCATGCAGA 59.442 47.619 45.50 28.83 46.30 4.26
2100 2578 1.680860 CCAGAAGATCCACTGCATGCA 60.681 52.381 21.29 21.29 33.40 3.96
2101 2579 1.022735 CCAGAAGATCCACTGCATGC 58.977 55.000 11.82 11.82 33.40 4.06
2102 2580 1.064906 ACCCAGAAGATCCACTGCATG 60.065 52.381 10.18 0.00 33.40 4.06
2103 2581 1.211457 GACCCAGAAGATCCACTGCAT 59.789 52.381 10.18 2.37 33.40 3.96
2182 2660 1.003233 GACTCCTTCACCACAGCCC 60.003 63.158 0.00 0.00 0.00 5.19
2206 2684 3.680620 TTGAAGGAGCCCATCGCCG 62.681 63.158 0.00 0.00 39.89 6.46
2207 2685 1.821332 CTTGAAGGAGCCCATCGCC 60.821 63.158 0.00 0.00 38.78 5.54
2208 2686 0.813210 CTCTTGAAGGAGCCCATCGC 60.813 60.000 0.00 0.00 37.98 4.58
2209 2687 3.376218 CTCTTGAAGGAGCCCATCG 57.624 57.895 0.00 0.00 0.00 3.84
2219 2697 2.421619 GTGGAGCTGTTCCTCTTGAAG 58.578 52.381 11.95 0.00 46.92 3.02
2237 2715 0.848942 CGATCGATCTTCAAGCGGTG 59.151 55.000 22.43 0.00 37.38 4.94
2254 2732 0.464013 GGTCTCCTCGATCTCCACGA 60.464 60.000 0.00 0.00 38.11 4.35
2255 2733 0.748367 TGGTCTCCTCGATCTCCACG 60.748 60.000 0.00 0.00 0.00 4.94
2256 2734 1.339610 CATGGTCTCCTCGATCTCCAC 59.660 57.143 0.00 0.00 0.00 4.02
2257 2735 1.697284 CATGGTCTCCTCGATCTCCA 58.303 55.000 0.00 0.00 0.00 3.86
2258 2736 0.316841 GCATGGTCTCCTCGATCTCC 59.683 60.000 0.00 0.00 0.00 3.71
2259 2737 1.035923 TGCATGGTCTCCTCGATCTC 58.964 55.000 0.00 0.00 0.00 2.75
2260 2738 1.343789 CATGCATGGTCTCCTCGATCT 59.656 52.381 19.40 0.00 0.00 2.75
2261 2739 1.793258 CATGCATGGTCTCCTCGATC 58.207 55.000 19.40 0.00 0.00 3.69
2262 2740 0.250209 GCATGCATGGTCTCCTCGAT 60.250 55.000 27.34 0.00 0.00 3.59
2263 2741 1.144716 GCATGCATGGTCTCCTCGA 59.855 57.895 27.34 0.00 0.00 4.04
2264 2742 2.242572 CGCATGCATGGTCTCCTCG 61.243 63.158 27.34 16.22 0.00 4.63
2278 2756 1.581934 ACTGTTATACGCATGCGCAT 58.418 45.000 38.15 32.52 44.19 4.73
2279 2757 2.124122 CTACTGTTATACGCATGCGCA 58.876 47.619 38.15 28.30 44.19 6.09
2280 2758 1.455786 CCTACTGTTATACGCATGCGC 59.544 52.381 38.15 22.40 44.19 6.09
2288 2766 8.348507 ACGAAGCAATAGTACCTACTGTTATAC 58.651 37.037 0.00 0.00 35.80 1.47
2293 2771 4.201891 CGACGAAGCAATAGTACCTACTGT 60.202 45.833 0.00 0.00 37.10 3.55
2294 2772 4.280461 CGACGAAGCAATAGTACCTACTG 58.720 47.826 0.00 0.00 37.10 2.74
2295 2773 3.243002 GCGACGAAGCAATAGTACCTACT 60.243 47.826 0.00 0.00 37.42 2.57
2296 2774 3.041492 GCGACGAAGCAATAGTACCTAC 58.959 50.000 0.00 0.00 37.05 3.18
2297 2775 2.947652 AGCGACGAAGCAATAGTACCTA 59.052 45.455 0.00 0.00 40.15 3.08
2298 2776 1.749634 AGCGACGAAGCAATAGTACCT 59.250 47.619 0.00 0.00 40.15 3.08
2299 2777 2.205307 AGCGACGAAGCAATAGTACC 57.795 50.000 0.00 0.00 40.15 3.34
2309 2787 0.038526 ACCCACTTGTAGCGACGAAG 60.039 55.000 0.00 0.00 0.00 3.79
2340 2818 4.680237 CGGCTGAAGTGGCACCGA 62.680 66.667 15.27 0.00 46.71 4.69
2346 2824 2.394708 CATCGTATACGGCTGAAGTGG 58.605 52.381 24.18 1.47 40.29 4.00
2357 2835 5.671568 CGTCGACACATATAGCATCGTATAC 59.328 44.000 17.16 0.00 34.47 1.47
2364 2842 2.793278 TGCGTCGACACATATAGCAT 57.207 45.000 17.16 0.00 0.00 3.79
2368 2846 5.036090 ACGTAAAATGCGTCGACACATATA 58.964 37.500 18.73 12.33 38.23 0.86
2370 2848 3.244156 ACGTAAAATGCGTCGACACATA 58.756 40.909 18.73 1.57 38.23 2.29
2371 2849 2.063266 ACGTAAAATGCGTCGACACAT 58.937 42.857 17.16 15.08 38.23 3.21
2372 2850 1.452773 GACGTAAAATGCGTCGACACA 59.547 47.619 17.16 13.13 46.85 3.72
2373 2851 2.120951 GACGTAAAATGCGTCGACAC 57.879 50.000 17.16 6.48 46.85 3.67
2379 2857 4.168014 TCATTCGTAGACGTAAAATGCGT 58.832 39.130 1.46 0.00 45.86 5.24
2381 2859 5.944049 TCTCATTCGTAGACGTAAAATGC 57.056 39.130 1.46 0.00 40.80 3.56
2409 2887 1.262151 TCTAAAACTTGGCACGAACGC 59.738 47.619 0.00 0.00 0.00 4.84
2411 2889 2.350484 GGCTCTAAAACTTGGCACGAAC 60.350 50.000 0.00 0.00 0.00 3.95
2412 2890 1.877443 GGCTCTAAAACTTGGCACGAA 59.123 47.619 0.00 0.00 0.00 3.85
2414 2892 0.165944 CGGCTCTAAAACTTGGCACG 59.834 55.000 0.00 0.00 0.00 5.34
2430 2921 6.720012 ATTTGAAAAATATGTCAAACCGGC 57.280 33.333 0.00 0.00 44.24 6.13
2431 2922 8.304202 TGAATTTGAAAAATATGTCAAACCGG 57.696 30.769 0.00 0.00 44.24 5.28
2486 2977 8.319057 AGAGGTAAATACACCAGTGATGATTA 57.681 34.615 4.48 0.00 41.40 1.75
2489 2980 6.620877 AAGAGGTAAATACACCAGTGATGA 57.379 37.500 4.48 0.00 41.40 2.92
2498 2989 7.094933 ACACGGATGAAAAAGAGGTAAATACAC 60.095 37.037 0.00 0.00 0.00 2.90
2539 3030 5.382616 AGGTAGTAAAAAGGGACCAACAAG 58.617 41.667 0.00 0.00 32.28 3.16
2540 3031 5.133153 AGAGGTAGTAAAAAGGGACCAACAA 59.867 40.000 0.00 0.00 32.28 2.83
2567 3065 1.184322 TTCCGTACGTTACAGGGCCA 61.184 55.000 15.21 0.00 0.00 5.36
2578 3076 5.388944 GGTACTATAGCAAGATTCCGTACG 58.611 45.833 8.69 8.69 0.00 3.67
2647 3145 1.134491 CATCCTGCAGCAGTGATCTCA 60.134 52.381 21.26 0.00 0.00 3.27
2649 3147 0.464013 GCATCCTGCAGCAGTGATCT 60.464 55.000 21.26 1.94 44.26 2.75
2682 3180 9.498176 GGTTTAAAACTATGTCAGAGGAAGTAA 57.502 33.333 0.00 0.00 0.00 2.24
2684 3182 6.649557 CGGTTTAAAACTATGTCAGAGGAAGT 59.350 38.462 1.03 0.00 0.00 3.01
2688 3186 4.094442 GGCGGTTTAAAACTATGTCAGAGG 59.906 45.833 1.03 0.00 0.00 3.69
2690 3188 3.680937 CGGCGGTTTAAAACTATGTCAGA 59.319 43.478 0.00 0.00 0.00 3.27
2691 3189 3.434299 ACGGCGGTTTAAAACTATGTCAG 59.566 43.478 13.24 0.00 0.00 3.51
2692 3190 3.401182 ACGGCGGTTTAAAACTATGTCA 58.599 40.909 13.24 0.00 0.00 3.58
2693 3191 3.681417 AGACGGCGGTTTAAAACTATGTC 59.319 43.478 13.24 6.16 0.00 3.06
2694 3192 3.667360 AGACGGCGGTTTAAAACTATGT 58.333 40.909 13.24 0.00 0.00 2.29
2695 3193 4.673534 AAGACGGCGGTTTAAAACTATG 57.326 40.909 13.24 0.00 0.00 2.23
2696 3194 5.876460 ACATAAGACGGCGGTTTAAAACTAT 59.124 36.000 13.24 0.00 0.00 2.12
2697 3195 5.120519 CACATAAGACGGCGGTTTAAAACTA 59.879 40.000 13.24 0.00 0.00 2.24
2704 3202 2.073816 CTTCACATAAGACGGCGGTTT 58.926 47.619 13.24 7.66 0.00 3.27
2711 3209 1.390123 CGCACACCTTCACATAAGACG 59.610 52.381 0.00 0.00 0.00 4.18
2717 3215 1.134401 CCCTATCGCACACCTTCACAT 60.134 52.381 0.00 0.00 0.00 3.21
2730 3228 3.151710 TGCGGTGGACCCCTATCG 61.152 66.667 0.00 0.00 0.00 2.92
2739 3237 3.164977 TGGGTCTTGTGCGGTGGA 61.165 61.111 0.00 0.00 0.00 4.02
2740 3238 2.669569 CTGGGTCTTGTGCGGTGG 60.670 66.667 0.00 0.00 0.00 4.61
2746 3245 3.512680 GACGATTAGTCTGGGTCTTGTG 58.487 50.000 0.00 0.00 46.13 3.33
2783 3282 2.787601 TAGTGTCTTCGTGTGTGGTC 57.212 50.000 0.00 0.00 0.00 4.02
2785 3284 3.245284 CACTTTAGTGTCTTCGTGTGTGG 59.755 47.826 1.69 0.00 40.96 4.17
2796 3295 1.931172 ACACACGTGCACTTTAGTGTC 59.069 47.619 20.84 4.92 44.83 3.67
2833 3332 2.540383 AGTCTCATACAGCTTGTCCCA 58.460 47.619 0.00 0.00 0.00 4.37
2836 3335 3.594134 AGCAAGTCTCATACAGCTTGTC 58.406 45.455 0.00 0.00 38.19 3.18
2843 3342 5.045942 TGGGATGTTTAGCAAGTCTCATACA 60.046 40.000 0.00 0.00 0.00 2.29
2852 3351 4.789012 ATTGTGTGGGATGTTTAGCAAG 57.211 40.909 0.00 0.00 0.00 4.01
2853 3352 5.295950 CAAATTGTGTGGGATGTTTAGCAA 58.704 37.500 0.00 0.00 0.00 3.91
2860 3359 5.163364 TGTTTAAGCAAATTGTGTGGGATGT 60.163 36.000 0.00 0.00 0.00 3.06
2898 3397 5.111989 GCATCGTGCATGATATACCATACT 58.888 41.667 20.81 0.00 44.26 2.12
2902 3401 2.336667 CGCATCGTGCATGATATACCA 58.663 47.619 20.81 0.00 45.36 3.25
2904 3403 1.061131 GCCGCATCGTGCATGATATAC 59.939 52.381 20.81 12.31 45.36 1.47
2913 3412 0.796870 GTTTTTAGGCCGCATCGTGC 60.797 55.000 0.00 0.58 40.69 5.34
2919 3418 1.066303 CACAAGTGTTTTTAGGCCGCA 59.934 47.619 0.00 0.00 0.00 5.69
2932 3431 1.571919 GTAGCCCTATCGCACAAGTG 58.428 55.000 0.00 0.00 0.00 3.16
2933 3432 0.464452 GGTAGCCCTATCGCACAAGT 59.536 55.000 0.00 0.00 0.00 3.16
2951 3450 1.200252 CGCGGGTGATAGTCTGATAGG 59.800 57.143 0.00 0.00 0.00 2.57
2953 3452 0.596577 GCGCGGGTGATAGTCTGATA 59.403 55.000 8.83 0.00 0.00 2.15
2958 3457 0.651031 GAAAAGCGCGGGTGATAGTC 59.349 55.000 8.83 0.00 0.00 2.59
2959 3458 0.036765 TGAAAAGCGCGGGTGATAGT 60.037 50.000 8.83 0.00 0.00 2.12
2960 3459 1.083489 TTGAAAAGCGCGGGTGATAG 58.917 50.000 8.83 0.00 0.00 2.08
2961 3460 1.198178 GTTTGAAAAGCGCGGGTGATA 59.802 47.619 8.83 0.00 0.00 2.15
2962 3461 0.039527 GTTTGAAAAGCGCGGGTGAT 60.040 50.000 8.83 0.00 0.00 3.06
2963 3462 1.357334 GTTTGAAAAGCGCGGGTGA 59.643 52.632 8.83 0.00 0.00 4.02
2964 3463 2.008697 CGTTTGAAAAGCGCGGGTG 61.009 57.895 8.83 0.00 44.94 4.61
2965 3464 2.330041 CGTTTGAAAAGCGCGGGT 59.670 55.556 8.83 0.00 44.94 5.28
3013 3512 1.134159 TGCCGTCCTAGTCTCCTAGAC 60.134 57.143 0.00 0.00 45.38 2.59
3031 3530 1.672363 TGGATTTGCAGATCGTGATGC 59.328 47.619 10.82 0.00 42.86 3.91
3051 3551 4.421574 CCTATAGGGAGGGTAATCTGGT 57.578 50.000 11.33 0.00 37.23 4.00
3112 3612 3.329929 AACTTAACATCTCACGGTCCC 57.670 47.619 0.00 0.00 0.00 4.46
3117 3617 5.276395 CCGCTGATTAACTTAACATCTCACG 60.276 44.000 0.00 0.00 0.00 4.35
3150 3650 6.543465 TGAATTCTCGCTATCATTTGACCATT 59.457 34.615 7.05 0.00 0.00 3.16
3151 3651 6.057533 TGAATTCTCGCTATCATTTGACCAT 58.942 36.000 7.05 0.00 0.00 3.55
3152 3652 5.427378 TGAATTCTCGCTATCATTTGACCA 58.573 37.500 7.05 0.00 0.00 4.02
3153 3653 5.755375 TCTGAATTCTCGCTATCATTTGACC 59.245 40.000 7.05 0.00 0.00 4.02
3155 3655 6.988580 ACATCTGAATTCTCGCTATCATTTGA 59.011 34.615 7.05 0.00 0.00 2.69
3156 3656 7.187244 ACATCTGAATTCTCGCTATCATTTG 57.813 36.000 7.05 0.00 0.00 2.32
3158 3658 7.255035 CCAAACATCTGAATTCTCGCTATCATT 60.255 37.037 7.05 0.00 0.00 2.57
3159 3659 6.204301 CCAAACATCTGAATTCTCGCTATCAT 59.796 38.462 7.05 0.00 0.00 2.45
3160 3660 5.525012 CCAAACATCTGAATTCTCGCTATCA 59.475 40.000 7.05 0.00 0.00 2.15
3161 3661 5.049818 CCCAAACATCTGAATTCTCGCTATC 60.050 44.000 7.05 0.00 0.00 2.08
3163 3663 4.191544 CCCAAACATCTGAATTCTCGCTA 58.808 43.478 7.05 0.00 0.00 4.26
3164 3664 3.012518 CCCAAACATCTGAATTCTCGCT 58.987 45.455 7.05 0.00 0.00 4.93
3165 3665 2.478539 GCCCAAACATCTGAATTCTCGC 60.479 50.000 7.05 0.00 0.00 5.03
3166 3666 2.098117 GGCCCAAACATCTGAATTCTCG 59.902 50.000 7.05 0.00 0.00 4.04
3178 3678 1.076632 ACGGTGAAAGGCCCAAACA 60.077 52.632 0.00 0.00 0.00 2.83
3179 3679 0.822121 AGACGGTGAAAGGCCCAAAC 60.822 55.000 0.00 0.00 0.00 2.93
3183 3683 1.376037 CTCAGACGGTGAAAGGCCC 60.376 63.158 0.00 0.00 33.60 5.80
3184 3684 2.035442 GCTCAGACGGTGAAAGGCC 61.035 63.158 0.00 0.00 33.60 5.19
3185 3685 2.035442 GGCTCAGACGGTGAAAGGC 61.035 63.158 0.00 0.00 33.60 4.35
3186 3686 1.376037 GGGCTCAGACGGTGAAAGG 60.376 63.158 0.00 0.00 33.60 3.11
3187 3687 0.671781 CTGGGCTCAGACGGTGAAAG 60.672 60.000 8.28 0.00 43.49 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.