Multiple sequence alignment - TraesCS4A01G284000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G284000 chr4A 100.000 7584 0 0 789 8372 590667725 590660142 0.000000e+00 14006.0
1 TraesCS4A01G284000 chr4A 100.000 607 0 0 1 607 590668513 590667907 0.000000e+00 1122.0
2 TraesCS4A01G284000 chr4A 82.707 266 21 9 3864 4116 67175040 67175293 6.580000e-51 213.0
3 TraesCS4A01G284000 chr4A 93.333 90 6 0 6905 6994 15773054 15772965 5.270000e-27 134.0
4 TraesCS4A01G284000 chr4D 96.583 4829 119 20 789 5589 11855416 11860226 0.000000e+00 7962.0
5 TraesCS4A01G284000 chr4D 96.676 1113 32 4 5586 6695 11860261 11861371 0.000000e+00 1845.0
6 TraesCS4A01G284000 chr4D 90.119 1093 57 22 6989 8038 11861537 11862621 0.000000e+00 1373.0
7 TraesCS4A01G284000 chr4D 87.525 505 27 15 128 607 11854867 11855360 1.230000e-152 551.0
8 TraesCS4A01G284000 chr4D 89.781 411 16 13 7971 8372 11862600 11862993 3.490000e-138 503.0
9 TraesCS4A01G284000 chr4D 97.143 175 5 0 6729 6903 11861364 11861538 6.350000e-76 296.0
10 TraesCS4A01G284000 chr4B 94.975 2786 75 13 1662 4431 21943228 21940492 0.000000e+00 4309.0
11 TraesCS4A01G284000 chr4B 95.394 1129 46 4 4466 5588 21939901 21938773 0.000000e+00 1792.0
12 TraesCS4A01G284000 chr4B 95.984 971 33 6 5586 6555 21938729 21937764 0.000000e+00 1572.0
13 TraesCS4A01G284000 chr4B 93.295 865 41 7 792 1645 21944075 21943217 0.000000e+00 1260.0
14 TraesCS4A01G284000 chr4B 90.513 780 52 8 7050 7812 21937768 21936994 0.000000e+00 1011.0
15 TraesCS4A01G284000 chr4B 90.418 407 13 9 7971 8372 21936808 21936423 5.800000e-141 512.0
16 TraesCS4A01G284000 chr4B 86.386 404 31 15 102 504 21944724 21944344 3.610000e-113 420.0
17 TraesCS4A01G284000 chr4B 82.192 292 32 10 3837 4116 472392663 472392946 5.050000e-57 233.0
18 TraesCS4A01G284000 chr4B 83.824 204 10 9 7858 8038 21936990 21936787 1.120000e-38 172.0
19 TraesCS4A01G284000 chr4B 79.389 131 25 2 4594 4723 95681490 95681619 3.220000e-14 91.6
20 TraesCS4A01G284000 chr5A 86.164 889 86 19 3850 4705 39733311 39734195 0.000000e+00 926.0
21 TraesCS4A01G284000 chr5A 97.647 85 2 0 6906 6990 80934740 80934656 6.770000e-31 147.0
22 TraesCS4A01G284000 chr5A 86.466 133 10 4 4176 4307 327089759 327089884 1.130000e-28 139.0
23 TraesCS4A01G284000 chr5A 87.778 90 3 4 6680 6761 471411590 471411501 1.920000e-16 99.0
24 TraesCS4A01G284000 chr5A 86.458 96 5 4 6674 6761 471411511 471411606 1.920000e-16 99.0
25 TraesCS4A01G284000 chr5A 94.545 55 3 0 4178 4232 327089655 327089709 1.500000e-12 86.1
26 TraesCS4A01G284000 chr5A 95.122 41 2 0 6278 6318 706424420 706424380 1.950000e-06 65.8
27 TraesCS4A01G284000 chr5D 85.251 895 92 19 3850 4705 50319398 50320291 0.000000e+00 885.0
28 TraesCS4A01G284000 chr5D 93.258 89 2 1 6674 6762 332041780 332041696 2.450000e-25 128.0
29 TraesCS4A01G284000 chr5D 85.185 108 8 5 6663 6762 264632980 264633087 4.130000e-18 104.0
30 TraesCS4A01G284000 chr5D 82.692 104 13 3 6653 6756 332041687 332041785 4.160000e-13 87.9
31 TraesCS4A01G284000 chr5D 83.000 100 11 4 6664 6761 80707298 80707393 1.500000e-12 86.1
32 TraesCS4A01G284000 chr5B 88.937 461 41 5 3850 4302 53020155 53020613 2.040000e-155 560.0
33 TraesCS4A01G284000 chr5B 81.188 404 45 16 4332 4705 53020594 53020996 6.350000e-76 296.0
34 TraesCS4A01G284000 chr5B 93.258 89 6 0 6905 6993 249578586 249578674 1.900000e-26 132.0
35 TraesCS4A01G284000 chr5B 83.000 100 11 3 6664 6761 89636064 89636159 1.500000e-12 86.1
36 TraesCS4A01G284000 chr5B 78.788 132 24 4 4594 4723 259550601 259550730 1.500000e-12 86.1
37 TraesCS4A01G284000 chr5B 100.000 35 0 0 4101 4135 276247896 276247930 1.950000e-06 65.8
38 TraesCS4A01G284000 chr6B 84.670 561 40 22 3837 4378 382771903 382771370 1.250000e-142 518.0
39 TraesCS4A01G284000 chr6B 80.612 98 15 3 4572 4666 267021429 267021525 1.170000e-08 73.1
40 TraesCS4A01G284000 chr6D 83.717 565 40 19 3837 4378 223941566 223942101 3.510000e-133 486.0
41 TraesCS4A01G284000 chr6D 90.217 92 7 2 6268 6357 417896977 417896886 1.480000e-22 119.0
42 TraesCS4A01G284000 chr6D 90.476 42 2 2 6094 6135 263994557 263994518 4.000000e-03 54.7
43 TraesCS4A01G284000 chr6A 96.739 92 3 0 6901 6992 33306562 33306653 4.050000e-33 154.0
44 TraesCS4A01G284000 chr6A 98.837 86 1 0 6905 6990 573423755 573423670 4.050000e-33 154.0
45 TraesCS4A01G284000 chr6A 87.879 66 6 2 6265 6328 18519871 18519806 9.010000e-10 76.8
46 TraesCS4A01G284000 chr1A 98.837 86 1 0 6905 6990 10051326 10051241 4.050000e-33 154.0
47 TraesCS4A01G284000 chr2A 97.753 89 1 1 6902 6990 758265639 758265552 1.460000e-32 152.0
48 TraesCS4A01G284000 chr2A 81.651 109 11 5 6661 6761 87872642 87872749 1.940000e-11 82.4
49 TraesCS4A01G284000 chr2B 94.444 90 3 2 6906 6994 23029138 23029050 4.080000e-28 137.0
50 TraesCS4A01G284000 chr2B 93.258 89 5 1 6902 6990 23029051 23029138 6.820000e-26 130.0
51 TraesCS4A01G284000 chr2B 83.784 74 11 1 4594 4666 247931986 247932059 1.510000e-07 69.4
52 TraesCS4A01G284000 chr1D 89.320 103 7 3 6664 6765 253207959 253207860 8.820000e-25 126.0
53 TraesCS4A01G284000 chr1D 90.361 83 2 2 6680 6762 458142915 458142839 4.130000e-18 104.0
54 TraesCS4A01G284000 chr1D 85.859 99 11 3 6665 6761 406674179 406674082 1.490000e-17 102.0
55 TraesCS4A01G284000 chr1D 100.000 35 0 0 4101 4135 222339407 222339373 1.950000e-06 65.8
56 TraesCS4A01G284000 chr3B 89.216 102 6 3 6668 6768 748463083 748462986 1.140000e-23 122.0
57 TraesCS4A01G284000 chr3B 84.615 91 11 3 6269 6358 76488493 76488405 4.160000e-13 87.9
58 TraesCS4A01G284000 chr7A 79.389 131 25 2 4594 4723 53264104 53264233 3.220000e-14 91.6
59 TraesCS4A01G284000 chrUn 85.185 81 8 2 6269 6345 29907590 29907510 6.970000e-11 80.5
60 TraesCS4A01G284000 chr1B 85.185 81 8 2 6269 6345 588285170 588285250 6.970000e-11 80.5
61 TraesCS4A01G284000 chr7B 91.667 48 3 1 5198 5244 115682371 115682324 1.950000e-06 65.8
62 TraesCS4A01G284000 chr2D 83.582 67 9 1 6087 6153 582144917 582144853 2.520000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G284000 chr4A 590660142 590668513 8371 True 7564.000000 14006 100.000000 1 8372 2 chr4A.!!$R2 8371
1 TraesCS4A01G284000 chr4D 11854867 11862993 8126 False 2088.333333 7962 92.971167 128 8372 6 chr4D.!!$F1 8244
2 TraesCS4A01G284000 chr4B 21936423 21944724 8301 True 1381.000000 4309 91.348625 102 8372 8 chr4B.!!$R1 8270
3 TraesCS4A01G284000 chr5A 39733311 39734195 884 False 926.000000 926 86.164000 3850 4705 1 chr5A.!!$F1 855
4 TraesCS4A01G284000 chr5D 50319398 50320291 893 False 885.000000 885 85.251000 3850 4705 1 chr5D.!!$F1 855
5 TraesCS4A01G284000 chr5B 53020155 53020996 841 False 428.000000 560 85.062500 3850 4705 2 chr5B.!!$F5 855
6 TraesCS4A01G284000 chr6B 382771370 382771903 533 True 518.000000 518 84.670000 3837 4378 1 chr6B.!!$R1 541
7 TraesCS4A01G284000 chr6D 223941566 223942101 535 False 486.000000 486 83.717000 3837 4378 1 chr6D.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.037232 CGTGTCCAAGAGGGGAGTTC 60.037 60.000 0.00 0.0 37.71 3.01 F
303 309 0.872021 GGACGTCGATGATCTGTGGC 60.872 60.000 12.58 0.0 0.00 5.01 F
1597 1644 1.663695 CGAGGTCAAAATGGCGGTAT 58.336 50.000 0.00 0.0 0.00 2.73 F
1604 1651 0.173255 AAAATGGCGGTATGTGCAGC 59.827 50.000 0.00 0.0 0.00 5.25 F
3291 3364 0.534427 TGGTGTGTCTCGTCTCTCGT 60.534 55.000 0.00 0.0 40.80 4.18 F
3866 3942 0.892755 GGTACGGAGACATGGACACA 59.107 55.000 0.00 0.0 0.00 3.72 F
4530 5191 1.513858 ATAGGGTTTGTATCGGGCCA 58.486 50.000 4.39 0.0 0.00 5.36 F
5608 6326 1.544691 CTCCCTCCGGTCCATATTACG 59.455 57.143 0.00 0.0 0.00 3.18 F
6921 7641 0.615331 ACGTACTCCCTCTGTACCGA 59.385 55.000 0.00 0.0 37.55 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1597 1644 0.601046 CCAAGAGTCGAAGCTGCACA 60.601 55.000 1.02 0.00 0.00 4.57 R
1603 1650 0.667792 AGAACGCCAAGAGTCGAAGC 60.668 55.000 0.00 0.00 0.00 3.86 R
3506 3579 1.748403 GGCGAGGGTATGATGCAGA 59.252 57.895 0.00 0.00 0.00 4.26 R
3548 3621 3.965379 AAATTTGACTGCATGCATCCA 57.035 38.095 22.97 18.50 0.00 3.41 R
4815 5485 0.254462 TTTCATATCAGCGTGGGCCA 59.746 50.000 0.00 0.00 41.24 5.36 R
5380 6050 2.254546 TGAAATCACGAACTGCCACT 57.745 45.000 0.00 0.00 0.00 4.00 R
6526 7246 2.417652 ACAGCACCCCCATACATATGA 58.582 47.619 10.38 0.00 35.75 2.15 R
7325 8050 0.039527 GTTCCCATGGTTGTTCACGC 60.040 55.000 11.73 0.00 0.00 5.34 R
7757 8502 0.234884 GTAAGAACCAGTGCGTGCAC 59.765 55.000 16.91 16.91 46.50 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.755952 GGGCCATATGTCCCTTCTTT 57.244 50.000 14.83 0.00 39.46 2.52
22 23 3.032265 GGGCCATATGTCCCTTCTTTT 57.968 47.619 14.83 0.00 39.46 2.27
23 24 4.178956 GGGCCATATGTCCCTTCTTTTA 57.821 45.455 14.83 0.00 39.46 1.52
24 25 4.542697 GGGCCATATGTCCCTTCTTTTAA 58.457 43.478 14.83 0.00 39.46 1.52
25 26 4.341235 GGGCCATATGTCCCTTCTTTTAAC 59.659 45.833 14.83 0.00 39.46 2.01
26 27 5.201243 GGCCATATGTCCCTTCTTTTAACT 58.799 41.667 0.00 0.00 0.00 2.24
27 28 5.656859 GGCCATATGTCCCTTCTTTTAACTT 59.343 40.000 0.00 0.00 0.00 2.66
28 29 6.154534 GGCCATATGTCCCTTCTTTTAACTTT 59.845 38.462 0.00 0.00 0.00 2.66
29 30 7.035612 GCCATATGTCCCTTCTTTTAACTTTG 58.964 38.462 1.24 0.00 0.00 2.77
30 31 7.035612 CCATATGTCCCTTCTTTTAACTTTGC 58.964 38.462 1.24 0.00 0.00 3.68
31 32 4.561735 TGTCCCTTCTTTTAACTTTGCG 57.438 40.909 0.00 0.00 0.00 4.85
32 33 3.949113 TGTCCCTTCTTTTAACTTTGCGT 59.051 39.130 0.00 0.00 0.00 5.24
33 34 4.035909 TGTCCCTTCTTTTAACTTTGCGTC 59.964 41.667 0.00 0.00 0.00 5.19
34 35 3.566742 TCCCTTCTTTTAACTTTGCGTCC 59.433 43.478 0.00 0.00 0.00 4.79
35 36 3.316868 CCCTTCTTTTAACTTTGCGTCCA 59.683 43.478 0.00 0.00 0.00 4.02
36 37 4.537015 CCTTCTTTTAACTTTGCGTCCAG 58.463 43.478 0.00 0.00 0.00 3.86
46 47 3.561429 GCGTCCAGCGAATTGACA 58.439 55.556 0.00 0.00 44.77 3.58
47 48 1.866237 GCGTCCAGCGAATTGACAA 59.134 52.632 0.00 0.00 44.77 3.18
48 49 0.237235 GCGTCCAGCGAATTGACAAA 59.763 50.000 0.00 0.00 44.77 2.83
49 50 1.334599 GCGTCCAGCGAATTGACAAAA 60.335 47.619 0.00 0.00 44.77 2.44
50 51 2.856720 GCGTCCAGCGAATTGACAAAAA 60.857 45.455 0.00 0.00 44.77 1.94
51 52 2.973224 CGTCCAGCGAATTGACAAAAAG 59.027 45.455 0.00 0.00 44.77 2.27
52 53 3.548014 CGTCCAGCGAATTGACAAAAAGT 60.548 43.478 0.00 0.00 44.77 2.66
53 54 5.359977 CGTCCAGCGAATTGACAAAAAGTC 61.360 45.833 0.00 0.00 44.95 3.01
65 66 5.932021 GACAAAAAGTCACACACATCAAC 57.068 39.130 0.00 0.00 46.77 3.18
66 67 4.411327 ACAAAAAGTCACACACATCAACG 58.589 39.130 0.00 0.00 0.00 4.10
67 68 4.083003 ACAAAAAGTCACACACATCAACGT 60.083 37.500 0.00 0.00 0.00 3.99
68 69 3.673746 AAAGTCACACACATCAACGTG 57.326 42.857 0.00 0.00 42.81 4.49
77 78 1.800586 CACATCAACGTGTCCAAGAGG 59.199 52.381 0.00 0.00 32.00 3.69
78 79 1.270839 ACATCAACGTGTCCAAGAGGG 60.271 52.381 0.00 0.00 34.83 4.30
79 80 0.324943 ATCAACGTGTCCAAGAGGGG 59.675 55.000 0.00 0.00 37.22 4.79
80 81 0.761323 TCAACGTGTCCAAGAGGGGA 60.761 55.000 0.00 0.00 37.22 4.81
81 82 0.320771 CAACGTGTCCAAGAGGGGAG 60.321 60.000 0.00 0.00 37.71 4.30
82 83 0.763223 AACGTGTCCAAGAGGGGAGT 60.763 55.000 0.00 0.00 37.71 3.85
83 84 0.763223 ACGTGTCCAAGAGGGGAGTT 60.763 55.000 0.00 0.00 37.71 3.01
84 85 0.037232 CGTGTCCAAGAGGGGAGTTC 60.037 60.000 0.00 0.00 37.71 3.01
85 86 1.056660 GTGTCCAAGAGGGGAGTTCA 58.943 55.000 0.00 0.00 37.71 3.18
86 87 1.002544 GTGTCCAAGAGGGGAGTTCAG 59.997 57.143 0.00 0.00 37.71 3.02
87 88 1.132849 TGTCCAAGAGGGGAGTTCAGA 60.133 52.381 0.00 0.00 37.71 3.27
88 89 1.978580 GTCCAAGAGGGGAGTTCAGAA 59.021 52.381 0.00 0.00 37.71 3.02
89 90 2.372172 GTCCAAGAGGGGAGTTCAGAAA 59.628 50.000 0.00 0.00 37.71 2.52
90 91 3.053077 TCCAAGAGGGGAGTTCAGAAAA 58.947 45.455 0.00 0.00 37.22 2.29
91 92 3.073062 TCCAAGAGGGGAGTTCAGAAAAG 59.927 47.826 0.00 0.00 37.22 2.27
92 93 3.073062 CCAAGAGGGGAGTTCAGAAAAGA 59.927 47.826 0.00 0.00 0.00 2.52
93 94 4.446311 CCAAGAGGGGAGTTCAGAAAAGAA 60.446 45.833 0.00 0.00 0.00 2.52
94 95 5.133221 CAAGAGGGGAGTTCAGAAAAGAAA 58.867 41.667 0.00 0.00 0.00 2.52
95 96 4.979335 AGAGGGGAGTTCAGAAAAGAAAG 58.021 43.478 0.00 0.00 0.00 2.62
96 97 4.660771 AGAGGGGAGTTCAGAAAAGAAAGA 59.339 41.667 0.00 0.00 0.00 2.52
97 98 4.979335 AGGGGAGTTCAGAAAAGAAAGAG 58.021 43.478 0.00 0.00 0.00 2.85
98 99 4.660771 AGGGGAGTTCAGAAAAGAAAGAGA 59.339 41.667 0.00 0.00 0.00 3.10
99 100 5.132816 AGGGGAGTTCAGAAAAGAAAGAGAA 59.867 40.000 0.00 0.00 0.00 2.87
100 101 5.471797 GGGGAGTTCAGAAAAGAAAGAGAAG 59.528 44.000 0.00 0.00 0.00 2.85
106 107 9.237187 AGTTCAGAAAAGAAAGAGAAGAAAACT 57.763 29.630 0.00 0.00 0.00 2.66
118 119 6.716284 AGAGAAGAAAACTTATCCAAGAGGG 58.284 40.000 0.00 0.00 35.60 4.30
158 160 3.049674 TCGGCCAGAAAAGCGCAG 61.050 61.111 11.47 0.00 0.00 5.18
159 161 3.049674 CGGCCAGAAAAGCGCAGA 61.050 61.111 11.47 0.00 0.00 4.26
160 162 2.616330 CGGCCAGAAAAGCGCAGAA 61.616 57.895 11.47 0.00 0.00 3.02
161 163 1.081175 GGCCAGAAAAGCGCAGAAC 60.081 57.895 11.47 0.00 0.00 3.01
206 208 2.505498 CGCCTCGACGTTTCCATCG 61.505 63.158 0.00 0.00 39.72 3.84
233 235 4.873129 CCGTGCCTCCATCGACCG 62.873 72.222 0.00 0.00 0.00 4.79
235 237 2.202756 GTGCCTCCATCGACCGAC 60.203 66.667 0.00 0.00 0.00 4.79
257 263 3.059834 CCGATCAATCAAAAAGCAAAGCG 59.940 43.478 0.00 0.00 0.00 4.68
303 309 0.872021 GGACGTCGATGATCTGTGGC 60.872 60.000 12.58 0.00 0.00 5.01
383 393 1.809619 CAGGCCGACATACCACACG 60.810 63.158 0.00 0.00 0.00 4.49
386 396 2.736682 GCCGACATACCACACGCAC 61.737 63.158 0.00 0.00 0.00 5.34
387 397 2.441378 CCGACATACCACACGCACG 61.441 63.158 0.00 0.00 0.00 5.34
389 399 2.024868 GACATACCACACGCACGCA 61.025 57.895 0.00 0.00 0.00 5.24
391 401 2.029815 ATACCACACGCACGCACA 59.970 55.556 0.00 0.00 0.00 4.57
392 402 2.314647 ATACCACACGCACGCACAC 61.315 57.895 0.00 0.00 0.00 3.82
528 554 3.347590 TCCCTCCTCCGCTCTCCA 61.348 66.667 0.00 0.00 0.00 3.86
531 557 2.124693 CCTCCTCCGCTCTCCAGTC 61.125 68.421 0.00 0.00 0.00 3.51
533 559 2.363018 CCTCCGCTCTCCAGTCCA 60.363 66.667 0.00 0.00 0.00 4.02
1274 1320 2.545952 CCGAGCCGCTCTGTAATGTAAT 60.546 50.000 18.14 0.00 0.00 1.89
1275 1321 2.472861 CGAGCCGCTCTGTAATGTAATG 59.527 50.000 18.14 0.00 0.00 1.90
1279 1325 3.001330 GCCGCTCTGTAATGTAATGTGTC 59.999 47.826 0.00 0.00 0.00 3.67
1346 1392 4.785453 GGGAGCAGCAGGAACCGG 62.785 72.222 0.00 0.00 0.00 5.28
1459 1506 7.225784 TCCTTATTGATTTTGCTTGTTGCTA 57.774 32.000 0.00 0.00 43.37 3.49
1579 1626 2.876368 AAGAATCAAGCGGGAGGGCG 62.876 60.000 0.00 0.00 38.18 6.13
1597 1644 1.663695 CGAGGTCAAAATGGCGGTAT 58.336 50.000 0.00 0.00 0.00 2.73
1603 1650 1.472082 TCAAAATGGCGGTATGTGCAG 59.528 47.619 0.00 0.00 0.00 4.41
1604 1651 0.173255 AAAATGGCGGTATGTGCAGC 59.827 50.000 0.00 0.00 0.00 5.25
1614 1661 2.611518 GTATGTGCAGCTTCGACTCTT 58.388 47.619 0.00 0.00 0.00 2.85
1653 1700 3.982475 TGTGTTGTTTTCAGTTGTGCAA 58.018 36.364 0.00 0.00 0.00 4.08
1699 1746 9.747898 AACAGTTATATGTTTGTTGATAAGGGA 57.252 29.630 0.00 0.00 40.47 4.20
1700 1747 9.747898 ACAGTTATATGTTTGTTGATAAGGGAA 57.252 29.630 0.00 0.00 0.00 3.97
1702 1749 9.747898 AGTTATATGTTTGTTGATAAGGGAACA 57.252 29.630 0.00 0.00 0.00 3.18
1703 1750 9.783256 GTTATATGTTTGTTGATAAGGGAACAC 57.217 33.333 0.00 0.00 31.85 3.32
1704 1751 5.722021 ATGTTTGTTGATAAGGGAACACC 57.278 39.130 0.00 0.00 40.67 4.16
1705 1752 4.537751 TGTTTGTTGATAAGGGAACACCA 58.462 39.130 0.00 0.00 43.89 4.17
1706 1753 4.956700 TGTTTGTTGATAAGGGAACACCAA 59.043 37.500 0.00 0.00 43.89 3.67
1707 1754 5.163499 TGTTTGTTGATAAGGGAACACCAAC 60.163 40.000 0.00 0.00 43.89 3.77
1708 1755 4.447138 TGTTGATAAGGGAACACCAACT 57.553 40.909 0.00 0.00 43.89 3.16
1735 1793 4.990426 GCAACCAATGAAACTTTGCATAGT 59.010 37.500 3.73 3.73 41.77 2.12
1739 1797 9.289303 CAACCAATGAAACTTTGCATAGTATAC 57.711 33.333 10.37 5.94 0.00 1.47
1963 2027 0.827368 GGTTGCAAAGGGGACAAACA 59.173 50.000 0.00 0.00 31.26 2.83
2009 2073 4.593597 TTCTAAAAATAGAAGCGTGGCG 57.406 40.909 0.00 0.00 32.75 5.69
2020 2084 1.145803 AGCGTGGCGTTAGAACTTTC 58.854 50.000 0.00 0.00 0.00 2.62
2297 2361 8.840321 CAATACACGGAGGATAATTCATTTTCT 58.160 33.333 0.00 0.00 0.00 2.52
2403 2467 5.183331 TGATTGAAGTTAGTAGACTCTGCGT 59.817 40.000 0.00 0.00 0.00 5.24
2554 2618 1.884235 AACTTTTGGCTGGAGACTCG 58.116 50.000 0.00 0.00 0.00 4.18
2804 2877 3.015327 GCTCCTAGTCGAAGTCCAACTA 58.985 50.000 0.00 0.00 0.00 2.24
2848 2921 8.157476 AGGATACCTGTGAATGGAAATATACAC 58.843 37.037 0.00 0.00 29.57 2.90
3077 3150 2.828520 TGAGCAGAAAACCACCAAAACA 59.171 40.909 0.00 0.00 0.00 2.83
3080 3153 3.197549 AGCAGAAAACCACCAAAACATGT 59.802 39.130 0.00 0.00 0.00 3.21
3088 3161 2.692557 CCACCAAAACATGTTGACCTGA 59.307 45.455 12.82 0.00 0.00 3.86
3117 3190 6.950842 TGTGTTGATAGAAGATGATGTTCCT 58.049 36.000 0.00 0.00 0.00 3.36
3285 3358 4.024302 TCGTCATATATGGTGTGTCTCGTC 60.024 45.833 12.78 0.00 0.00 4.20
3286 3359 4.023963 CGTCATATATGGTGTGTCTCGTCT 60.024 45.833 12.78 0.00 0.00 4.18
3287 3360 5.453648 GTCATATATGGTGTGTCTCGTCTC 58.546 45.833 12.78 0.00 0.00 3.36
3288 3361 5.239744 GTCATATATGGTGTGTCTCGTCTCT 59.760 44.000 12.78 0.00 0.00 3.10
3289 3362 5.470437 TCATATATGGTGTGTCTCGTCTCTC 59.530 44.000 12.78 0.00 0.00 3.20
3290 3363 0.805614 ATGGTGTGTCTCGTCTCTCG 59.194 55.000 0.00 0.00 41.41 4.04
3291 3364 0.534427 TGGTGTGTCTCGTCTCTCGT 60.534 55.000 0.00 0.00 40.80 4.18
3455 3528 3.380320 GCTGTTCCTAACAAAACACACCT 59.620 43.478 0.00 0.00 41.61 4.00
3462 3535 5.530915 TCCTAACAAAACACACCTGAAGATG 59.469 40.000 0.00 0.00 0.00 2.90
3498 3571 9.448438 TTGCTCTAATTTTCTCTTTATGCACTA 57.552 29.630 0.00 0.00 0.00 2.74
3506 3579 7.801716 TTTCTCTTTATGCACTAAACACTGT 57.198 32.000 0.00 0.00 0.00 3.55
3619 3695 4.953667 TCCTCATCAATATGCAGTCTGAC 58.046 43.478 3.32 0.00 32.76 3.51
3620 3696 4.406649 TCCTCATCAATATGCAGTCTGACA 59.593 41.667 10.88 1.59 32.76 3.58
3621 3697 5.104817 TCCTCATCAATATGCAGTCTGACAA 60.105 40.000 10.88 0.00 32.76 3.18
3752 3828 1.471964 TCGCAACGCAAACAAATGAC 58.528 45.000 0.00 0.00 0.00 3.06
3834 3910 4.461781 AGGAAGTAGTTAGCTAGTCGCAAA 59.538 41.667 0.00 0.00 42.61 3.68
3848 3924 4.298332 AGTCGCAAAATAAAAAGCACAGG 58.702 39.130 0.00 0.00 0.00 4.00
3866 3942 0.892755 GGTACGGAGACATGGACACA 59.107 55.000 0.00 0.00 0.00 3.72
4203 4302 4.404098 GGACGATTGGCCACCGGT 62.404 66.667 24.98 14.93 0.00 5.28
4530 5191 1.513858 ATAGGGTTTGTATCGGGCCA 58.486 50.000 4.39 0.00 0.00 5.36
4646 5315 2.363276 TGGGGGACACGCGTATCT 60.363 61.111 18.15 0.00 34.15 1.98
4647 5316 1.956629 CTGGGGGACACGCGTATCTT 61.957 60.000 18.15 0.00 34.15 2.40
4677 5346 1.880796 CCATATCGCCGTGTCGCAA 60.881 57.895 0.00 0.00 0.00 4.85
4815 5485 6.292150 AGGAAGTTTCTGATTTTCGAGACTT 58.708 36.000 0.00 0.00 37.31 3.01
4820 5490 1.740025 CTGATTTTCGAGACTTGGCCC 59.260 52.381 0.00 0.00 0.00 5.80
5105 5775 4.644234 TGGTCACTCACAATTGAATGTTGT 59.356 37.500 13.59 2.60 40.23 3.32
5327 5997 2.162681 GCCAAGTAAGTGCATGTTCCT 58.837 47.619 0.00 0.00 0.00 3.36
5344 6014 8.502387 GCATGTTCCTATTCTCTGCTTAATTAG 58.498 37.037 0.00 0.00 0.00 1.73
5391 6061 6.422776 AACTATAAAATGAGTGGCAGTTCG 57.577 37.500 0.00 0.00 32.92 3.95
5485 6155 8.708378 TGAATATTAATGAAGAGAGAAGCTGGA 58.292 33.333 0.00 0.00 0.00 3.86
5608 6326 1.544691 CTCCCTCCGGTCCATATTACG 59.455 57.143 0.00 0.00 0.00 3.18
5673 6391 4.623932 ACTTCAGGAACTAGCAACATGA 57.376 40.909 0.00 0.00 36.02 3.07
5704 6422 2.029221 GGTAGGGATCGAAGGCGC 59.971 66.667 0.00 0.00 37.46 6.53
5865 6583 6.861065 ATACTACGTGCTATTTGGATTTGG 57.139 37.500 0.00 0.00 0.00 3.28
5869 6587 4.079253 ACGTGCTATTTGGATTTGGAAGT 58.921 39.130 0.00 0.00 0.00 3.01
5960 6679 4.332828 ACTCCTTCCGTTCCTTTTTATGG 58.667 43.478 0.00 0.00 0.00 2.74
6017 6736 8.404107 TCTCCCTTTGACCAAGTTTATAAAAG 57.596 34.615 0.00 0.00 0.00 2.27
6331 7051 8.725148 AGAGTCTATGACAATGTGAAAAATGTC 58.275 33.333 0.00 0.00 41.90 3.06
6434 7154 6.183360 GGTCACATGACTGACATATCCAAAAG 60.183 42.308 15.90 0.00 42.17 2.27
6442 7162 6.484288 ACTGACATATCCAAAAGGATGTTCA 58.516 36.000 7.26 5.99 32.75 3.18
6443 7163 6.600822 ACTGACATATCCAAAAGGATGTTCAG 59.399 38.462 19.56 19.56 35.67 3.02
6444 7164 6.484288 TGACATATCCAAAAGGATGTTCAGT 58.516 36.000 7.26 0.00 32.75 3.41
6450 7170 5.935945 TCCAAAAGGATGTTCAGTAGTTCA 58.064 37.500 0.00 0.00 0.00 3.18
6526 7246 9.905713 TGCCATTATAGATCTTAGTTTCACTTT 57.094 29.630 0.00 0.00 0.00 2.66
6595 7315 1.273048 GCATTTCCATGGAGCACACAA 59.727 47.619 15.53 5.60 0.00 3.33
6631 7351 4.569966 CAGCCAGCAGAAGAATGTTAGTAG 59.430 45.833 0.00 0.00 0.00 2.57
6688 7408 4.178956 ACCTGTGTCCCAAATTACTTGT 57.821 40.909 0.00 0.00 32.65 3.16
6689 7409 4.142038 ACCTGTGTCCCAAATTACTTGTC 58.858 43.478 0.00 0.00 32.65 3.18
6690 7410 4.141251 ACCTGTGTCCCAAATTACTTGTCT 60.141 41.667 0.00 0.00 32.65 3.41
6691 7411 4.827284 CCTGTGTCCCAAATTACTTGTCTT 59.173 41.667 0.00 0.00 32.65 3.01
6692 7412 6.001460 CCTGTGTCCCAAATTACTTGTCTTA 58.999 40.000 0.00 0.00 32.65 2.10
6693 7413 6.149474 CCTGTGTCCCAAATTACTTGTCTTAG 59.851 42.308 0.00 0.00 32.65 2.18
6694 7414 6.833041 TGTGTCCCAAATTACTTGTCTTAGA 58.167 36.000 0.00 0.00 32.65 2.10
6695 7415 7.458397 TGTGTCCCAAATTACTTGTCTTAGAT 58.542 34.615 0.00 0.00 32.65 1.98
6696 7416 7.942341 TGTGTCCCAAATTACTTGTCTTAGATT 59.058 33.333 0.00 0.00 32.65 2.40
6697 7417 8.793592 GTGTCCCAAATTACTTGTCTTAGATTT 58.206 33.333 0.00 0.00 32.65 2.17
6698 7418 8.792633 TGTCCCAAATTACTTGTCTTAGATTTG 58.207 33.333 0.00 0.00 35.40 2.32
6699 7419 8.793592 GTCCCAAATTACTTGTCTTAGATTTGT 58.206 33.333 0.00 0.00 34.40 2.83
6700 7420 9.010029 TCCCAAATTACTTGTCTTAGATTTGTC 57.990 33.333 0.00 0.00 34.40 3.18
6701 7421 9.014297 CCCAAATTACTTGTCTTAGATTTGTCT 57.986 33.333 0.00 0.00 34.40 3.41
6709 7429 8.919145 ACTTGTCTTAGATTTGTCTAGATAGGG 58.081 37.037 0.00 0.00 0.00 3.53
6710 7430 9.137459 CTTGTCTTAGATTTGTCTAGATAGGGA 57.863 37.037 0.00 0.00 0.00 4.20
6711 7431 9.661954 TTGTCTTAGATTTGTCTAGATAGGGAT 57.338 33.333 0.00 0.00 0.00 3.85
6712 7432 9.083422 TGTCTTAGATTTGTCTAGATAGGGATG 57.917 37.037 0.00 0.00 0.00 3.51
6713 7433 9.084533 GTCTTAGATTTGTCTAGATAGGGATGT 57.915 37.037 0.00 0.00 0.00 3.06
6716 7436 7.784470 AGATTTGTCTAGATAGGGATGTACC 57.216 40.000 0.00 0.00 38.08 3.34
6717 7437 7.540183 AGATTTGTCTAGATAGGGATGTACCT 58.460 38.462 0.00 0.00 44.75 3.08
6718 7438 8.679725 AGATTTGTCTAGATAGGGATGTACCTA 58.320 37.037 0.00 0.00 46.55 3.08
6754 7474 4.457834 AGACAAGTAATTCAGGACGGAG 57.542 45.455 0.00 0.00 0.00 4.63
6897 7617 2.965831 TGTGTACTGCAGGAAGTCTCTT 59.034 45.455 19.93 0.00 0.00 2.85
6903 7623 4.381411 ACTGCAGGAAGTCTCTTTGTTAC 58.619 43.478 19.93 0.00 0.00 2.50
6904 7624 3.390135 TGCAGGAAGTCTCTTTGTTACG 58.610 45.455 0.00 0.00 0.00 3.18
6905 7625 3.181469 TGCAGGAAGTCTCTTTGTTACGT 60.181 43.478 0.00 0.00 0.00 3.57
6906 7626 4.038282 TGCAGGAAGTCTCTTTGTTACGTA 59.962 41.667 0.00 0.00 0.00 3.57
6907 7627 4.385146 GCAGGAAGTCTCTTTGTTACGTAC 59.615 45.833 0.00 0.00 0.00 3.67
6908 7628 5.770417 CAGGAAGTCTCTTTGTTACGTACT 58.230 41.667 0.00 0.00 0.00 2.73
6909 7629 5.857517 CAGGAAGTCTCTTTGTTACGTACTC 59.142 44.000 0.00 0.00 0.00 2.59
6910 7630 5.048154 AGGAAGTCTCTTTGTTACGTACTCC 60.048 44.000 0.00 0.00 0.00 3.85
6911 7631 4.780275 AGTCTCTTTGTTACGTACTCCC 57.220 45.455 0.00 0.00 0.00 4.30
6912 7632 4.405548 AGTCTCTTTGTTACGTACTCCCT 58.594 43.478 0.00 0.00 0.00 4.20
6913 7633 4.458642 AGTCTCTTTGTTACGTACTCCCTC 59.541 45.833 0.00 0.00 0.00 4.30
6914 7634 4.458642 GTCTCTTTGTTACGTACTCCCTCT 59.541 45.833 0.00 0.00 0.00 3.69
6915 7635 4.458295 TCTCTTTGTTACGTACTCCCTCTG 59.542 45.833 0.00 0.00 0.00 3.35
6916 7636 4.147321 TCTTTGTTACGTACTCCCTCTGT 58.853 43.478 0.00 0.00 0.00 3.41
6917 7637 5.316167 TCTTTGTTACGTACTCCCTCTGTA 58.684 41.667 0.00 0.00 0.00 2.74
6918 7638 5.182001 TCTTTGTTACGTACTCCCTCTGTAC 59.818 44.000 0.00 0.00 37.50 2.90
6919 7639 3.347216 TGTTACGTACTCCCTCTGTACC 58.653 50.000 0.00 0.00 37.55 3.34
6920 7640 2.315925 TACGTACTCCCTCTGTACCG 57.684 55.000 0.00 0.00 37.55 4.02
6921 7641 0.615331 ACGTACTCCCTCTGTACCGA 59.385 55.000 0.00 0.00 37.55 4.69
6922 7642 1.003580 ACGTACTCCCTCTGTACCGAA 59.996 52.381 0.00 0.00 37.55 4.30
6923 7643 2.086869 CGTACTCCCTCTGTACCGAAA 58.913 52.381 0.00 0.00 37.55 3.46
6924 7644 2.686915 CGTACTCCCTCTGTACCGAAAT 59.313 50.000 0.00 0.00 37.55 2.17
6925 7645 3.879295 CGTACTCCCTCTGTACCGAAATA 59.121 47.826 0.00 0.00 37.55 1.40
6926 7646 4.260948 CGTACTCCCTCTGTACCGAAATAC 60.261 50.000 0.00 0.00 37.55 1.89
6927 7647 3.705051 ACTCCCTCTGTACCGAAATACA 58.295 45.455 0.00 0.00 33.96 2.29
6928 7648 4.287552 ACTCCCTCTGTACCGAAATACAT 58.712 43.478 0.00 0.00 34.59 2.29
6929 7649 4.099573 ACTCCCTCTGTACCGAAATACATG 59.900 45.833 0.00 0.00 34.59 3.21
6930 7650 4.028131 TCCCTCTGTACCGAAATACATGT 58.972 43.478 2.69 2.69 34.59 3.21
6931 7651 4.098960 TCCCTCTGTACCGAAATACATGTC 59.901 45.833 0.00 0.00 34.59 3.06
6932 7652 4.042398 CCTCTGTACCGAAATACATGTCG 58.958 47.826 0.00 0.00 34.59 4.35
6933 7653 3.441163 TCTGTACCGAAATACATGTCGC 58.559 45.455 0.00 0.00 34.59 5.19
6934 7654 3.129813 TCTGTACCGAAATACATGTCGCT 59.870 43.478 0.00 0.00 34.59 4.93
6935 7655 3.183754 TGTACCGAAATACATGTCGCTG 58.816 45.455 0.00 0.00 35.93 5.18
6936 7656 1.651987 ACCGAAATACATGTCGCTGG 58.348 50.000 0.00 1.83 35.93 4.85
6937 7657 1.206132 ACCGAAATACATGTCGCTGGA 59.794 47.619 0.00 0.00 35.93 3.86
6938 7658 1.860950 CCGAAATACATGTCGCTGGAG 59.139 52.381 0.00 0.00 35.93 3.86
6939 7659 2.540515 CGAAATACATGTCGCTGGAGT 58.459 47.619 0.00 0.00 0.00 3.85
6940 7660 3.490249 CCGAAATACATGTCGCTGGAGTA 60.490 47.826 0.00 0.00 35.93 2.59
6941 7661 3.731216 CGAAATACATGTCGCTGGAGTAG 59.269 47.826 0.00 0.00 0.00 2.57
6954 7674 4.792521 CTGGAGTAGCAGTAAGTCAACT 57.207 45.455 0.00 0.00 0.00 3.16
6955 7675 5.899120 CTGGAGTAGCAGTAAGTCAACTA 57.101 43.478 0.00 0.00 0.00 2.24
6956 7676 5.640189 TGGAGTAGCAGTAAGTCAACTAC 57.360 43.478 0.00 0.00 34.71 2.73
6957 7677 5.322754 TGGAGTAGCAGTAAGTCAACTACT 58.677 41.667 0.00 0.00 44.64 2.57
6959 7679 5.900865 AGTAGCAGTAAGTCAACTACTCC 57.099 43.478 0.00 0.00 39.38 3.85
6960 7680 5.322754 AGTAGCAGTAAGTCAACTACTCCA 58.677 41.667 0.00 0.00 39.38 3.86
6961 7681 4.792521 AGCAGTAAGTCAACTACTCCAG 57.207 45.455 0.00 0.00 37.50 3.86
6962 7682 3.056465 AGCAGTAAGTCAACTACTCCAGC 60.056 47.826 0.00 0.00 37.50 4.85
6963 7683 3.502920 CAGTAAGTCAACTACTCCAGCG 58.497 50.000 0.00 0.00 37.50 5.18
6964 7684 3.190744 CAGTAAGTCAACTACTCCAGCGA 59.809 47.826 0.00 0.00 37.50 4.93
6965 7685 2.726832 AAGTCAACTACTCCAGCGAC 57.273 50.000 0.00 0.00 37.50 5.19
6966 7686 1.617322 AGTCAACTACTCCAGCGACA 58.383 50.000 0.00 0.00 34.08 4.35
6967 7687 2.171840 AGTCAACTACTCCAGCGACAT 58.828 47.619 0.00 0.00 34.08 3.06
6968 7688 2.094494 AGTCAACTACTCCAGCGACATG 60.094 50.000 0.00 0.00 34.08 3.21
6969 7689 1.893137 TCAACTACTCCAGCGACATGT 59.107 47.619 0.00 0.00 0.00 3.21
6970 7690 3.086282 TCAACTACTCCAGCGACATGTA 58.914 45.455 0.00 0.00 0.00 2.29
6971 7691 3.699538 TCAACTACTCCAGCGACATGTAT 59.300 43.478 0.00 0.00 0.00 2.29
6972 7692 4.159693 TCAACTACTCCAGCGACATGTATT 59.840 41.667 0.00 0.00 0.00 1.89
6973 7693 4.737855 ACTACTCCAGCGACATGTATTT 57.262 40.909 0.00 0.00 0.00 1.40
6974 7694 4.683832 ACTACTCCAGCGACATGTATTTC 58.316 43.478 0.00 0.00 0.00 2.17
6975 7695 2.540515 ACTCCAGCGACATGTATTTCG 58.459 47.619 0.00 0.00 38.31 3.46
6976 7696 1.860950 CTCCAGCGACATGTATTTCGG 59.139 52.381 0.00 0.00 35.73 4.30
6977 7697 1.206132 TCCAGCGACATGTATTTCGGT 59.794 47.619 0.00 0.07 46.29 4.69
6978 7698 2.427812 TCCAGCGACATGTATTTCGGTA 59.572 45.455 8.74 0.00 43.70 4.02
6979 7699 2.538449 CCAGCGACATGTATTTCGGTAC 59.462 50.000 8.74 0.00 43.70 3.34
6980 7700 3.183754 CAGCGACATGTATTTCGGTACA 58.816 45.455 8.74 0.00 43.70 2.90
6981 7701 3.242944 CAGCGACATGTATTTCGGTACAG 59.757 47.826 8.74 0.00 43.70 2.74
6982 7702 3.129813 AGCGACATGTATTTCGGTACAGA 59.870 43.478 7.49 0.00 43.71 3.41
6983 7703 3.486108 GCGACATGTATTTCGGTACAGAG 59.514 47.826 0.00 0.00 37.93 3.35
6984 7704 4.042398 CGACATGTATTTCGGTACAGAGG 58.958 47.826 0.00 0.00 37.93 3.69
6985 7705 4.369182 GACATGTATTTCGGTACAGAGGG 58.631 47.826 0.00 0.00 37.93 4.30
6986 7706 4.028131 ACATGTATTTCGGTACAGAGGGA 58.972 43.478 0.00 0.00 37.93 4.20
6987 7707 4.099573 ACATGTATTTCGGTACAGAGGGAG 59.900 45.833 0.00 0.00 37.93 4.30
6988 7708 3.705051 TGTATTTCGGTACAGAGGGAGT 58.295 45.455 0.00 0.00 31.33 3.85
6989 7709 4.858850 TGTATTTCGGTACAGAGGGAGTA 58.141 43.478 0.00 0.00 31.33 2.59
7007 7727 8.472007 AGGGAGTAATATATATAGCTCTGTGC 57.528 38.462 18.24 0.00 43.29 4.57
7025 7745 1.541147 TGCTTGCCTGCTTAATCACAC 59.459 47.619 0.00 0.00 0.00 3.82
7068 7791 6.946229 ACACGTTTTGTCATCTATCTACAC 57.054 37.500 0.00 0.00 29.79 2.90
7069 7792 6.452242 ACACGTTTTGTCATCTATCTACACA 58.548 36.000 0.00 0.00 29.79 3.72
7070 7793 7.097192 ACACGTTTTGTCATCTATCTACACAT 58.903 34.615 0.00 0.00 29.79 3.21
7071 7794 7.275779 ACACGTTTTGTCATCTATCTACACATC 59.724 37.037 0.00 0.00 29.79 3.06
7072 7795 7.275560 CACGTTTTGTCATCTATCTACACATCA 59.724 37.037 0.00 0.00 0.00 3.07
7117 7841 9.031537 TCTTGAGTATAATCAAACACTGGACTA 57.968 33.333 15.76 0.00 34.02 2.59
7234 7959 5.106436 TGCTATTCTGCTTTCATTGTCACTG 60.106 40.000 0.00 0.00 0.00 3.66
7240 7965 3.633525 TGCTTTCATTGTCACTGCTTTCT 59.366 39.130 0.00 0.00 0.00 2.52
7242 7967 4.461405 CTTTCATTGTCACTGCTTTCTCG 58.539 43.478 0.00 0.00 0.00 4.04
7456 8185 7.488322 ACTGATTAGATCTCTTCTTTCTTCCG 58.512 38.462 0.00 0.00 35.79 4.30
7475 8204 6.367969 TCTTCCGTGTAGCTTATCAGTTTTTC 59.632 38.462 0.00 0.00 0.00 2.29
7477 8206 4.935808 CCGTGTAGCTTATCAGTTTTTCCT 59.064 41.667 0.00 0.00 0.00 3.36
7492 8221 1.878953 TTCCTGCCTGTCGTTTCTTC 58.121 50.000 0.00 0.00 0.00 2.87
7496 8225 3.007506 TCCTGCCTGTCGTTTCTTCATTA 59.992 43.478 0.00 0.00 0.00 1.90
7498 8227 4.396166 CCTGCCTGTCGTTTCTTCATTATT 59.604 41.667 0.00 0.00 0.00 1.40
7500 8229 5.938322 TGCCTGTCGTTTCTTCATTATTTC 58.062 37.500 0.00 0.00 0.00 2.17
7517 8246 0.966179 TTCTTAGAGAGCCACGCACA 59.034 50.000 0.00 0.00 0.00 4.57
7537 8281 2.240493 ACTTCAGGGTGTTGTCTTCG 57.760 50.000 0.00 0.00 0.00 3.79
7561 8306 2.481854 CGCTGAGATGGGAGAAGAATG 58.518 52.381 0.00 0.00 0.00 2.67
7601 8346 2.713595 TCTTTCCTTCCCCCTCTTTCA 58.286 47.619 0.00 0.00 0.00 2.69
7634 8379 1.090052 GCATAGTGGGGCACTCGAAC 61.090 60.000 0.00 0.00 41.21 3.95
7675 8420 3.289062 TTCGCCGTCGGTGTCTCA 61.289 61.111 23.47 2.11 34.40 3.27
7757 8502 3.349006 GTGGCGTGCCTGTCAGTG 61.349 66.667 12.84 0.00 36.94 3.66
7777 8522 0.105964 TGCACGCACTGGTTCTTACT 59.894 50.000 0.00 0.00 0.00 2.24
7778 8523 1.341852 TGCACGCACTGGTTCTTACTA 59.658 47.619 0.00 0.00 0.00 1.82
7823 8568 3.638627 TCCGATAGAACAGAGCATGTCAT 59.361 43.478 0.00 0.00 43.00 3.06
7824 8569 3.986572 CCGATAGAACAGAGCATGTCATC 59.013 47.826 0.00 0.00 43.00 2.92
7825 8570 3.667726 CGATAGAACAGAGCATGTCATCG 59.332 47.826 13.82 13.82 43.00 3.84
7826 8571 4.615949 GATAGAACAGAGCATGTCATCGT 58.384 43.478 0.00 0.00 43.00 3.73
7827 8572 3.325293 AGAACAGAGCATGTCATCGTT 57.675 42.857 0.00 0.65 43.00 3.85
7828 8573 2.998670 AGAACAGAGCATGTCATCGTTG 59.001 45.455 0.00 0.00 43.00 4.10
7830 8575 2.071540 ACAGAGCATGTCATCGTTGTG 58.928 47.619 0.00 0.00 37.75 3.33
7831 8576 2.289010 ACAGAGCATGTCATCGTTGTGA 60.289 45.455 0.00 0.00 37.75 3.58
7832 8577 2.934553 CAGAGCATGTCATCGTTGTGAT 59.065 45.455 0.00 0.00 38.01 3.06
7833 8578 4.114794 CAGAGCATGTCATCGTTGTGATA 58.885 43.478 0.00 0.00 34.83 2.15
7855 8601 4.991789 TGCATTGGTTGGGATAGCTATA 57.008 40.909 6.13 0.00 0.00 1.31
7879 8625 1.086634 GGCAGAAGGTTAGCAGCTCG 61.087 60.000 0.00 0.00 0.00 5.03
7892 8638 0.729116 CAGCTCGGGCACAAATACAG 59.271 55.000 11.40 0.00 41.70 2.74
7927 8673 2.026915 TGTGAGTCTCCATTGGGTCATG 60.027 50.000 2.09 0.00 34.93 3.07
7930 8676 1.208052 AGTCTCCATTGGGTCATGACG 59.792 52.381 19.33 5.29 34.93 4.35
7968 8732 4.510340 ACCACAAGTACAGTGAAATCGTTC 59.490 41.667 17.09 0.00 39.30 3.95
8028 8796 7.497249 CACCCCATTGTTGTTTCTTTCATTTTA 59.503 33.333 0.00 0.00 0.00 1.52
8030 8798 8.341903 CCCCATTGTTGTTTCTTTCATTTTAAC 58.658 33.333 0.00 0.00 0.00 2.01
8031 8799 8.887717 CCCATTGTTGTTTCTTTCATTTTAACA 58.112 29.630 0.00 0.00 0.00 2.41
8058 8861 2.644798 CCTTTCTTCCTCTCTTTCCCCA 59.355 50.000 0.00 0.00 0.00 4.96
8075 8878 3.208922 TCCCCACCCACTTCATCTATAGA 59.791 47.826 4.57 4.57 0.00 1.98
8076 8879 3.973973 CCCCACCCACTTCATCTATAGAA 59.026 47.826 6.52 0.00 0.00 2.10
8077 8880 4.599241 CCCCACCCACTTCATCTATAGAAT 59.401 45.833 6.52 0.00 0.00 2.40
8078 8881 5.785423 CCCCACCCACTTCATCTATAGAATA 59.215 44.000 6.52 0.00 0.00 1.75
8079 8882 6.445139 CCCCACCCACTTCATCTATAGAATAT 59.555 42.308 6.52 0.00 0.00 1.28
8080 8883 7.623677 CCCCACCCACTTCATCTATAGAATATA 59.376 40.741 6.52 0.00 0.00 0.86
8081 8884 8.700051 CCCACCCACTTCATCTATAGAATATAG 58.300 40.741 6.52 4.99 0.00 1.31
8113 8920 5.838531 TTTCGTAACACCAGAACCAAAAT 57.161 34.783 0.00 0.00 0.00 1.82
8164 8975 4.436242 ACTGTGGTATAAGACACGTGAG 57.564 45.455 25.01 6.75 40.39 3.51
8246 9065 1.057275 TGAACCTGTACCACCTGGCA 61.057 55.000 0.00 0.00 39.32 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.201243 AGTTAAAAGAAGGGACATATGGCC 58.799 41.667 20.42 20.42 44.61 5.36
4 5 6.775594 AAGTTAAAAGAAGGGACATATGGC 57.224 37.500 7.80 3.17 0.00 4.40
5 6 7.035612 GCAAAGTTAAAAGAAGGGACATATGG 58.964 38.462 7.80 0.00 0.00 2.74
6 7 6.747280 CGCAAAGTTAAAAGAAGGGACATATG 59.253 38.462 0.00 0.00 0.00 1.78
7 8 6.433093 ACGCAAAGTTAAAAGAAGGGACATAT 59.567 34.615 0.00 0.00 0.00 1.78
8 9 5.766174 ACGCAAAGTTAAAAGAAGGGACATA 59.234 36.000 0.00 0.00 0.00 2.29
9 10 4.583073 ACGCAAAGTTAAAAGAAGGGACAT 59.417 37.500 0.00 0.00 0.00 3.06
10 11 3.949113 ACGCAAAGTTAAAAGAAGGGACA 59.051 39.130 0.00 0.00 0.00 4.02
11 12 4.534168 GACGCAAAGTTAAAAGAAGGGAC 58.466 43.478 0.00 0.00 0.00 4.46
12 13 3.566742 GGACGCAAAGTTAAAAGAAGGGA 59.433 43.478 0.00 0.00 0.00 4.20
13 14 3.316868 TGGACGCAAAGTTAAAAGAAGGG 59.683 43.478 0.00 0.00 0.00 3.95
14 15 4.537015 CTGGACGCAAAGTTAAAAGAAGG 58.463 43.478 0.00 0.00 0.00 3.46
15 16 3.975035 GCTGGACGCAAAGTTAAAAGAAG 59.025 43.478 0.00 0.00 38.92 2.85
16 17 3.547214 CGCTGGACGCAAAGTTAAAAGAA 60.547 43.478 0.00 0.00 39.08 2.52
17 18 2.032377 CGCTGGACGCAAAGTTAAAAGA 60.032 45.455 0.00 0.00 39.08 2.52
18 19 2.032377 TCGCTGGACGCAAAGTTAAAAG 60.032 45.455 0.00 0.00 43.23 2.27
19 20 1.941294 TCGCTGGACGCAAAGTTAAAA 59.059 42.857 0.00 0.00 43.23 1.52
20 21 1.584175 TCGCTGGACGCAAAGTTAAA 58.416 45.000 0.00 0.00 43.23 1.52
21 22 1.584175 TTCGCTGGACGCAAAGTTAA 58.416 45.000 0.00 0.00 43.23 2.01
22 23 1.803334 ATTCGCTGGACGCAAAGTTA 58.197 45.000 0.00 0.00 43.23 2.24
23 24 0.951558 AATTCGCTGGACGCAAAGTT 59.048 45.000 0.00 0.00 43.23 2.66
24 25 0.238289 CAATTCGCTGGACGCAAAGT 59.762 50.000 0.00 0.00 43.23 2.66
25 26 0.516877 TCAATTCGCTGGACGCAAAG 59.483 50.000 0.00 0.00 43.23 2.77
26 27 0.237235 GTCAATTCGCTGGACGCAAA 59.763 50.000 0.00 0.00 43.23 3.68
27 28 0.882484 TGTCAATTCGCTGGACGCAA 60.882 50.000 0.00 0.00 43.23 4.85
28 29 0.882484 TTGTCAATTCGCTGGACGCA 60.882 50.000 0.00 0.00 43.23 5.24
29 30 0.237235 TTTGTCAATTCGCTGGACGC 59.763 50.000 0.00 0.00 43.23 5.19
30 31 2.679355 TTTTGTCAATTCGCTGGACG 57.321 45.000 0.00 0.00 45.62 4.79
31 32 3.964909 ACTTTTTGTCAATTCGCTGGAC 58.035 40.909 0.00 0.00 0.00 4.02
32 33 4.223320 GACTTTTTGTCAATTCGCTGGA 57.777 40.909 0.00 0.00 44.73 3.86
43 44 4.495472 CGTTGATGTGTGTGACTTTTTGTC 59.505 41.667 0.00 0.00 45.54 3.18
44 45 4.083003 ACGTTGATGTGTGTGACTTTTTGT 60.083 37.500 0.00 0.00 0.00 2.83
45 46 4.262743 CACGTTGATGTGTGTGACTTTTTG 59.737 41.667 0.00 0.00 35.12 2.44
46 47 4.411327 CACGTTGATGTGTGTGACTTTTT 58.589 39.130 0.00 0.00 35.12 1.94
47 48 4.014847 CACGTTGATGTGTGTGACTTTT 57.985 40.909 0.00 0.00 35.12 2.27
48 49 3.673746 CACGTTGATGTGTGTGACTTT 57.326 42.857 0.00 0.00 35.12 2.66
57 58 1.800586 CCTCTTGGACACGTTGATGTG 59.199 52.381 1.92 1.92 45.41 3.21
58 59 1.270839 CCCTCTTGGACACGTTGATGT 60.271 52.381 0.00 0.00 35.39 3.06
59 60 1.442769 CCCTCTTGGACACGTTGATG 58.557 55.000 0.00 0.00 35.39 3.07
60 61 0.324943 CCCCTCTTGGACACGTTGAT 59.675 55.000 0.00 0.00 35.39 2.57
61 62 0.761323 TCCCCTCTTGGACACGTTGA 60.761 55.000 0.00 0.00 35.39 3.18
62 63 0.320771 CTCCCCTCTTGGACACGTTG 60.321 60.000 0.00 0.00 35.39 4.10
63 64 0.763223 ACTCCCCTCTTGGACACGTT 60.763 55.000 0.00 0.00 35.39 3.99
64 65 0.763223 AACTCCCCTCTTGGACACGT 60.763 55.000 0.00 0.00 35.39 4.49
65 66 0.037232 GAACTCCCCTCTTGGACACG 60.037 60.000 0.00 0.00 35.39 4.49
66 67 1.002544 CTGAACTCCCCTCTTGGACAC 59.997 57.143 0.00 0.00 35.39 3.67
67 68 1.132849 TCTGAACTCCCCTCTTGGACA 60.133 52.381 0.00 0.00 35.39 4.02
68 69 1.645710 TCTGAACTCCCCTCTTGGAC 58.354 55.000 0.00 0.00 35.39 4.02
69 70 2.415983 TTCTGAACTCCCCTCTTGGA 57.584 50.000 0.00 0.00 35.39 3.53
70 71 3.073062 TCTTTTCTGAACTCCCCTCTTGG 59.927 47.826 0.00 0.00 0.00 3.61
71 72 4.357918 TCTTTTCTGAACTCCCCTCTTG 57.642 45.455 0.00 0.00 0.00 3.02
72 73 5.132816 TCTTTCTTTTCTGAACTCCCCTCTT 59.867 40.000 0.00 0.00 0.00 2.85
73 74 4.660771 TCTTTCTTTTCTGAACTCCCCTCT 59.339 41.667 0.00 0.00 0.00 3.69
74 75 4.974399 TCTTTCTTTTCTGAACTCCCCTC 58.026 43.478 0.00 0.00 0.00 4.30
75 76 4.660771 TCTCTTTCTTTTCTGAACTCCCCT 59.339 41.667 0.00 0.00 0.00 4.79
76 77 4.974399 TCTCTTTCTTTTCTGAACTCCCC 58.026 43.478 0.00 0.00 0.00 4.81
77 78 6.292150 TCTTCTCTTTCTTTTCTGAACTCCC 58.708 40.000 0.00 0.00 0.00 4.30
78 79 7.793927 TTCTTCTCTTTCTTTTCTGAACTCC 57.206 36.000 0.00 0.00 0.00 3.85
79 80 9.497030 GTTTTCTTCTCTTTCTTTTCTGAACTC 57.503 33.333 0.00 0.00 0.00 3.01
80 81 9.237187 AGTTTTCTTCTCTTTCTTTTCTGAACT 57.763 29.630 0.00 0.00 0.00 3.01
81 82 9.847706 AAGTTTTCTTCTCTTTCTTTTCTGAAC 57.152 29.630 0.00 0.00 34.76 3.18
89 90 9.853177 TCTTGGATAAGTTTTCTTCTCTTTCTT 57.147 29.630 0.00 0.00 40.91 2.52
90 91 9.500785 CTCTTGGATAAGTTTTCTTCTCTTTCT 57.499 33.333 0.00 0.00 40.91 2.52
91 92 8.726068 CCTCTTGGATAAGTTTTCTTCTCTTTC 58.274 37.037 0.00 0.00 37.12 2.62
92 93 7.667635 CCCTCTTGGATAAGTTTTCTTCTCTTT 59.332 37.037 0.00 0.00 37.57 2.52
93 94 7.171653 CCCTCTTGGATAAGTTTTCTTCTCTT 58.828 38.462 0.00 0.00 37.57 2.85
94 95 6.296720 CCCCTCTTGGATAAGTTTTCTTCTCT 60.297 42.308 0.00 0.00 37.57 3.10
95 96 5.883115 CCCCTCTTGGATAAGTTTTCTTCTC 59.117 44.000 0.00 0.00 37.57 2.87
96 97 5.281245 CCCCCTCTTGGATAAGTTTTCTTCT 60.281 44.000 0.00 0.00 37.57 2.85
97 98 4.950475 CCCCCTCTTGGATAAGTTTTCTTC 59.050 45.833 0.00 0.00 37.57 2.87
98 99 4.935578 CCCCCTCTTGGATAAGTTTTCTT 58.064 43.478 0.00 0.00 39.12 2.52
99 100 4.592997 CCCCCTCTTGGATAAGTTTTCT 57.407 45.455 0.00 0.00 35.39 2.52
118 119 2.227089 CTCTACTCGTGGTGCACCCC 62.227 65.000 32.62 21.51 34.29 4.95
159 161 4.868116 AACCCTGGTGCGTGCGTT 62.868 61.111 0.00 0.00 0.00 4.84
161 163 4.988598 AGAACCCTGGTGCGTGCG 62.989 66.667 0.00 0.00 0.00 5.34
162 164 3.050275 GAGAACCCTGGTGCGTGC 61.050 66.667 0.00 0.00 0.00 5.34
163 165 1.961277 GTGAGAACCCTGGTGCGTG 60.961 63.158 0.00 0.00 0.00 5.34
229 231 3.727970 GCTTTTTGATTGATCGGTCGGTC 60.728 47.826 0.00 0.00 0.00 4.79
231 233 2.161410 TGCTTTTTGATTGATCGGTCGG 59.839 45.455 0.00 0.00 0.00 4.79
233 235 4.090498 GCTTTGCTTTTTGATTGATCGGTC 59.910 41.667 0.00 0.00 0.00 4.79
235 237 3.059834 CGCTTTGCTTTTTGATTGATCGG 59.940 43.478 0.00 0.00 0.00 4.18
257 263 2.207590 CGGAAGGGCGGACTTTAATAC 58.792 52.381 0.00 0.00 0.00 1.89
348 354 0.248134 CTGGTCGACTGCTACGCTAC 60.248 60.000 16.46 0.00 0.00 3.58
441 451 3.036084 CACACGTCACGTCCCTGC 61.036 66.667 0.00 0.00 38.32 4.85
528 554 3.827752 GGGAGCTTTCCCTGGACT 58.172 61.111 3.72 0.00 46.39 3.85
1274 1320 1.073763 CAATCAACAGAGGGGGACACA 59.926 52.381 0.00 0.00 0.00 3.72
1275 1321 1.826385 CAATCAACAGAGGGGGACAC 58.174 55.000 0.00 0.00 0.00 3.67
1279 1325 0.622665 AGAGCAATCAACAGAGGGGG 59.377 55.000 0.00 0.00 0.00 5.40
1421 1467 9.812347 AAATCAATAAGGAACCAGCATATATCA 57.188 29.630 0.00 0.00 0.00 2.15
1430 1477 6.458210 ACAAGCAAAATCAATAAGGAACCAG 58.542 36.000 0.00 0.00 0.00 4.00
1459 1506 1.202533 CCTCCCTGCAATCGATTACGT 60.203 52.381 10.97 0.00 40.69 3.57
1579 1626 2.097466 CACATACCGCCATTTTGACCTC 59.903 50.000 0.00 0.00 0.00 3.85
1597 1644 0.601046 CCAAGAGTCGAAGCTGCACA 60.601 55.000 1.02 0.00 0.00 4.57
1603 1650 0.667792 AGAACGCCAAGAGTCGAAGC 60.668 55.000 0.00 0.00 0.00 3.86
1604 1651 2.631418 TAGAACGCCAAGAGTCGAAG 57.369 50.000 0.00 0.00 0.00 3.79
1653 1700 4.038282 TGTTTGCAAAGAAGATGCTCATGT 59.962 37.500 13.26 0.00 44.14 3.21
1698 1745 2.966050 TGGTTGCAAAAGTTGGTGTTC 58.034 42.857 0.00 0.00 0.00 3.18
1699 1746 3.409026 TTGGTTGCAAAAGTTGGTGTT 57.591 38.095 0.00 0.00 0.00 3.32
1700 1747 3.055530 TCATTGGTTGCAAAAGTTGGTGT 60.056 39.130 0.00 0.00 0.00 4.16
1701 1748 3.529533 TCATTGGTTGCAAAAGTTGGTG 58.470 40.909 0.00 0.00 0.00 4.17
1702 1749 3.902881 TCATTGGTTGCAAAAGTTGGT 57.097 38.095 0.00 0.00 0.00 3.67
1703 1750 4.635324 AGTTTCATTGGTTGCAAAAGTTGG 59.365 37.500 0.00 0.00 0.00 3.77
1704 1751 5.799681 AGTTTCATTGGTTGCAAAAGTTG 57.200 34.783 0.00 0.00 0.00 3.16
1705 1752 6.610456 CAAAGTTTCATTGGTTGCAAAAGTT 58.390 32.000 0.00 0.00 0.00 2.66
1706 1753 5.391843 GCAAAGTTTCATTGGTTGCAAAAGT 60.392 36.000 0.00 0.00 43.17 2.66
1707 1754 5.029654 GCAAAGTTTCATTGGTTGCAAAAG 58.970 37.500 0.00 0.00 43.17 2.27
1708 1755 4.979388 GCAAAGTTTCATTGGTTGCAAAA 58.021 34.783 0.00 0.00 43.17 2.44
1786 1847 5.595542 AGCATTAATTTTATCCAGCAGAGCA 59.404 36.000 0.00 0.00 0.00 4.26
2009 2073 7.545965 TCGGATCATGAGAAAGAAAGTTCTAAC 59.454 37.037 0.09 0.00 37.98 2.34
2123 2187 9.131791 ACAAACAAAATAATGTGGTAGTCTTCT 57.868 29.630 0.00 0.00 32.81 2.85
2312 2376 2.437085 AGGGGGCAACTATTAACAGC 57.563 50.000 0.00 0.00 0.00 4.40
2428 2492 3.410631 TGGTCAATCTTAAAGCGGTCA 57.589 42.857 0.00 0.00 0.00 4.02
2554 2618 5.770162 TGGAACTCTTTCAATTTTCCTCTCC 59.230 40.000 4.83 0.00 37.27 3.71
2804 2877 2.236146 TCCTTCGAGTGTACATGCCATT 59.764 45.455 0.00 0.00 0.00 3.16
2848 2921 3.273434 TCCATTTTGAGAATGAGAGCGG 58.727 45.455 0.00 0.00 0.00 5.52
2983 3056 4.150451 TCATAACAGATATGATGCGCAACG 59.850 41.667 17.11 0.00 44.30 4.10
3077 3150 3.281727 ACACAGTGTTCAGGTCAACAT 57.718 42.857 0.00 0.00 38.53 2.71
3080 3153 3.342377 TCAACACAGTGTTCAGGTCAA 57.658 42.857 16.44 0.00 38.77 3.18
3088 3161 7.164122 ACATCATCTTCTATCAACACAGTGTT 58.836 34.615 13.53 13.53 42.08 3.32
3455 3528 1.881973 GCAAGCAGAACCACATCTTCA 59.118 47.619 0.00 0.00 0.00 3.02
3462 3535 4.773323 AAATTAGAGCAAGCAGAACCAC 57.227 40.909 0.00 0.00 0.00 4.16
3498 3571 3.009473 AGGGTATGATGCAGACAGTGTTT 59.991 43.478 0.00 0.00 0.00 2.83
3506 3579 1.748403 GGCGAGGGTATGATGCAGA 59.252 57.895 0.00 0.00 0.00 4.26
3548 3621 3.965379 AAATTTGACTGCATGCATCCA 57.035 38.095 22.97 18.50 0.00 3.41
3619 3695 8.592105 AATGAACTTGTACCATTTTCATGTTG 57.408 30.769 8.86 0.00 37.07 3.33
3620 3696 9.044150 CAAATGAACTTGTACCATTTTCATGTT 57.956 29.630 8.86 0.00 38.13 2.71
3621 3697 7.171337 GCAAATGAACTTGTACCATTTTCATGT 59.829 33.333 8.86 3.07 38.13 3.21
3706 3782 7.275888 TCACAACATTGCAAGAAAAGATAGT 57.724 32.000 4.94 0.00 0.00 2.12
3834 3910 4.694037 GTCTCCGTACCTGTGCTTTTTATT 59.306 41.667 0.00 0.00 0.00 1.40
3848 3924 1.736032 GCTGTGTCCATGTCTCCGTAC 60.736 57.143 0.00 0.00 0.00 3.67
4448 4553 0.800683 CCAAGTCGAACGCGCTATCA 60.801 55.000 5.73 0.00 37.46 2.15
4530 5191 3.245052 ACAGGAAGCTCAATAACAGCCTT 60.245 43.478 0.00 0.00 37.63 4.35
4815 5485 0.254462 TTTCATATCAGCGTGGGCCA 59.746 50.000 0.00 0.00 41.24 5.36
4820 5490 6.089920 TCGTTTTAGTTTCATATCAGCGTG 57.910 37.500 0.00 0.00 0.00 5.34
5070 5740 9.466497 AATTGTGAGTGACCATACATTATTTCT 57.534 29.630 0.00 0.00 0.00 2.52
5362 6032 9.379791 ACTGCCACTCATTTTATAGTTAGTTAC 57.620 33.333 0.00 0.00 0.00 2.50
5373 6043 3.734463 TCACGAACTGCCACTCATTTTA 58.266 40.909 0.00 0.00 0.00 1.52
5380 6050 2.254546 TGAAATCACGAACTGCCACT 57.745 45.000 0.00 0.00 0.00 4.00
5391 6061 9.565213 CCAAAGAGTGATAGAAATTGAAATCAC 57.435 33.333 14.79 14.79 45.49 3.06
5485 6155 5.130145 ACAACTTAGGAGAGCAGCAATAGAT 59.870 40.000 0.00 0.00 0.00 1.98
5608 6326 5.823045 CCACATCAAATTAAGTACTCCCTCC 59.177 44.000 0.00 0.00 0.00 4.30
5673 6391 5.415077 CGATCCCTACCATTCTCGTAACTAT 59.585 44.000 0.00 0.00 0.00 2.12
5704 6422 4.326504 AACATCTTTCAAAGCACTTGGG 57.673 40.909 0.00 0.00 35.56 4.12
5812 6530 4.732923 CACAAAAGTTATGGACACGTGTTG 59.267 41.667 24.26 14.81 0.00 3.33
5813 6531 4.396790 ACACAAAAGTTATGGACACGTGTT 59.603 37.500 24.26 9.82 31.39 3.32
5960 6679 5.356426 ACTTTCCAACAAACCAATACAAGC 58.644 37.500 0.00 0.00 0.00 4.01
5995 6714 9.639601 GATTCTTTTATAAACTTGGTCAAAGGG 57.360 33.333 0.00 0.00 40.51 3.95
6328 7048 6.689561 TCCCTCCCTAACTTAATATGAGACA 58.310 40.000 0.00 0.00 0.00 3.41
6331 7051 8.903059 ATACTCCCTCCCTAACTTAATATGAG 57.097 38.462 0.00 0.00 0.00 2.90
6434 7154 4.065088 TGTGCTTGAACTACTGAACATCC 58.935 43.478 0.00 0.00 0.00 3.51
6442 7162 7.730784 ACCTATCCTATATGTGCTTGAACTACT 59.269 37.037 0.00 0.00 0.00 2.57
6443 7163 7.897864 ACCTATCCTATATGTGCTTGAACTAC 58.102 38.462 0.00 0.00 0.00 2.73
6444 7164 9.021807 GTACCTATCCTATATGTGCTTGAACTA 57.978 37.037 0.00 0.00 0.00 2.24
6450 7170 9.415008 CATCTAGTACCTATCCTATATGTGCTT 57.585 37.037 0.00 0.00 0.00 3.91
6526 7246 2.417652 ACAGCACCCCCATACATATGA 58.582 47.619 10.38 0.00 35.75 2.15
6595 7315 2.089980 GCTGGCTGATCTGAATTGTGT 58.910 47.619 3.42 0.00 0.00 3.72
6672 7392 8.792633 CAAATCTAAGACAAGTAATTTGGGACA 58.207 33.333 0.00 0.00 41.25 4.02
6690 7410 9.310449 GGTACATCCCTATCTAGACAAATCTAA 57.690 37.037 0.00 0.00 36.98 2.10
6691 7411 8.679725 AGGTACATCCCTATCTAGACAAATCTA 58.320 37.037 0.00 0.00 34.93 1.98
6692 7412 7.540183 AGGTACATCCCTATCTAGACAAATCT 58.460 38.462 0.00 0.00 36.50 2.40
6693 7413 7.784470 AGGTACATCCCTATCTAGACAAATC 57.216 40.000 0.00 0.00 36.75 2.17
6705 7425 8.679725 AGATTTGTCTAGATAGGTACATCCCTA 58.320 37.037 0.00 0.00 41.26 3.53
6706 7426 7.540183 AGATTTGTCTAGATAGGTACATCCCT 58.460 38.462 0.00 0.00 38.70 4.20
6707 7427 7.784470 AGATTTGTCTAGATAGGTACATCCC 57.216 40.000 0.00 0.00 36.75 3.85
6711 7431 9.916360 TGTCTTAGATTTGTCTAGATAGGTACA 57.084 33.333 0.00 0.00 0.00 2.90
6714 7434 9.482175 ACTTGTCTTAGATTTGTCTAGATAGGT 57.518 33.333 0.00 0.00 0.00 3.08
6722 7442 9.442047 CCTGAATTACTTGTCTTAGATTTGTCT 57.558 33.333 0.00 0.00 0.00 3.41
6723 7443 9.436957 TCCTGAATTACTTGTCTTAGATTTGTC 57.563 33.333 0.00 0.00 0.00 3.18
6724 7444 9.220767 GTCCTGAATTACTTGTCTTAGATTTGT 57.779 33.333 0.00 0.00 0.00 2.83
6725 7445 8.383619 CGTCCTGAATTACTTGTCTTAGATTTG 58.616 37.037 0.00 0.00 0.00 2.32
6726 7446 7.549488 CCGTCCTGAATTACTTGTCTTAGATTT 59.451 37.037 0.00 0.00 0.00 2.17
6727 7447 7.042335 CCGTCCTGAATTACTTGTCTTAGATT 58.958 38.462 0.00 0.00 0.00 2.40
6746 7466 2.777459 ATTCATACTCCCTCCGTCCT 57.223 50.000 0.00 0.00 0.00 3.85
6754 7474 6.655078 ATGGCATAACAAATTCATACTCCC 57.345 37.500 0.00 0.00 0.00 4.30
6841 7561 7.013942 CAGACAACATTCCATGGACATTCATAT 59.986 37.037 15.91 0.00 33.60 1.78
6897 7617 3.758554 GGTACAGAGGGAGTACGTAACAA 59.241 47.826 0.00 0.00 42.06 2.83
6903 7623 1.742761 TTCGGTACAGAGGGAGTACG 58.257 55.000 0.00 0.00 42.06 3.67
6904 7624 4.641989 TGTATTTCGGTACAGAGGGAGTAC 59.358 45.833 0.00 0.00 40.78 2.73
6905 7625 4.858850 TGTATTTCGGTACAGAGGGAGTA 58.141 43.478 0.00 0.00 31.33 2.59
6906 7626 3.705051 TGTATTTCGGTACAGAGGGAGT 58.295 45.455 0.00 0.00 31.33 3.85
6907 7627 4.099573 ACATGTATTTCGGTACAGAGGGAG 59.900 45.833 0.00 0.00 37.93 4.30
6908 7628 4.028131 ACATGTATTTCGGTACAGAGGGA 58.972 43.478 0.00 0.00 37.93 4.20
6909 7629 4.369182 GACATGTATTTCGGTACAGAGGG 58.631 47.826 0.00 0.00 37.93 4.30
6910 7630 4.042398 CGACATGTATTTCGGTACAGAGG 58.958 47.826 0.00 0.00 37.93 3.69
6911 7631 3.486108 GCGACATGTATTTCGGTACAGAG 59.514 47.826 0.00 0.00 37.93 3.35
6912 7632 3.129813 AGCGACATGTATTTCGGTACAGA 59.870 43.478 7.49 0.00 43.71 3.41
6913 7633 3.242944 CAGCGACATGTATTTCGGTACAG 59.757 47.826 8.74 0.00 43.70 2.74
6914 7634 3.183754 CAGCGACATGTATTTCGGTACA 58.816 45.455 8.74 0.00 43.70 2.90
6915 7635 2.538449 CCAGCGACATGTATTTCGGTAC 59.462 50.000 8.74 0.00 43.70 3.34
6916 7636 2.427812 TCCAGCGACATGTATTTCGGTA 59.572 45.455 8.74 0.00 43.70 4.02
6917 7637 1.206132 TCCAGCGACATGTATTTCGGT 59.794 47.619 0.00 0.07 46.29 4.69
6918 7638 1.860950 CTCCAGCGACATGTATTTCGG 59.139 52.381 0.00 0.00 35.73 4.30
6919 7639 2.540515 ACTCCAGCGACATGTATTTCG 58.459 47.619 0.00 0.00 38.31 3.46
6920 7640 3.491267 GCTACTCCAGCGACATGTATTTC 59.509 47.826 0.00 0.00 41.37 2.17
6921 7641 3.458189 GCTACTCCAGCGACATGTATTT 58.542 45.455 0.00 0.00 41.37 1.40
6922 7642 3.099267 GCTACTCCAGCGACATGTATT 57.901 47.619 0.00 0.00 41.37 1.89
6923 7643 2.802787 GCTACTCCAGCGACATGTAT 57.197 50.000 0.00 0.00 41.37 2.29
6932 7652 8.016694 AGTAGTTGACTTACTGCTACTCCAGC 62.017 46.154 0.00 0.00 43.10 4.85
6933 7653 4.792521 AGTTGACTTACTGCTACTCCAG 57.207 45.455 0.00 0.00 38.78 3.86
6934 7654 5.322754 AGTAGTTGACTTACTGCTACTCCA 58.677 41.667 0.00 0.00 38.99 3.86
6935 7655 5.882553 GAGTAGTTGACTTACTGCTACTCC 58.117 45.833 15.27 2.85 46.14 3.85
6937 7657 5.322754 TGGAGTAGTTGACTTACTGCTACT 58.677 41.667 5.83 0.00 40.96 2.57
6938 7658 5.640189 TGGAGTAGTTGACTTACTGCTAC 57.360 43.478 5.70 0.00 40.53 3.58
6939 7659 4.158025 GCTGGAGTAGTTGACTTACTGCTA 59.842 45.833 5.70 0.00 40.53 3.49
6940 7660 3.056465 GCTGGAGTAGTTGACTTACTGCT 60.056 47.826 5.70 0.00 42.68 4.24
6941 7661 3.254892 GCTGGAGTAGTTGACTTACTGC 58.745 50.000 0.00 0.00 39.06 4.40
6942 7662 3.190744 TCGCTGGAGTAGTTGACTTACTG 59.809 47.826 0.00 0.00 39.06 2.74
6943 7663 3.190953 GTCGCTGGAGTAGTTGACTTACT 59.809 47.826 0.00 0.00 39.06 2.24
6944 7664 3.057736 TGTCGCTGGAGTAGTTGACTTAC 60.058 47.826 0.00 0.00 39.06 2.34
6945 7665 3.151554 TGTCGCTGGAGTAGTTGACTTA 58.848 45.455 0.00 0.00 39.06 2.24
6946 7666 1.961394 TGTCGCTGGAGTAGTTGACTT 59.039 47.619 0.00 0.00 39.06 3.01
6947 7667 1.617322 TGTCGCTGGAGTAGTTGACT 58.383 50.000 0.00 0.00 42.90 3.41
6948 7668 2.263077 CATGTCGCTGGAGTAGTTGAC 58.737 52.381 0.00 0.00 35.67 3.18
6949 7669 1.893137 ACATGTCGCTGGAGTAGTTGA 59.107 47.619 0.00 0.00 0.00 3.18
6950 7670 2.370281 ACATGTCGCTGGAGTAGTTG 57.630 50.000 0.00 0.00 0.00 3.16
6951 7671 4.737855 AATACATGTCGCTGGAGTAGTT 57.262 40.909 0.00 0.00 0.00 2.24
6952 7672 4.683832 GAAATACATGTCGCTGGAGTAGT 58.316 43.478 0.00 0.00 0.00 2.73
6953 7673 3.731216 CGAAATACATGTCGCTGGAGTAG 59.269 47.826 0.00 0.00 0.00 2.57
6954 7674 3.490249 CCGAAATACATGTCGCTGGAGTA 60.490 47.826 0.00 0.00 35.93 2.59
6955 7675 2.540515 CGAAATACATGTCGCTGGAGT 58.459 47.619 0.00 0.00 0.00 3.85
6956 7676 1.860950 CCGAAATACATGTCGCTGGAG 59.139 52.381 0.00 0.00 35.93 3.86
6957 7677 1.206132 ACCGAAATACATGTCGCTGGA 59.794 47.619 0.00 0.00 35.93 3.86
6958 7678 1.651987 ACCGAAATACATGTCGCTGG 58.348 50.000 0.00 1.83 35.93 4.85
6959 7679 3.183754 TGTACCGAAATACATGTCGCTG 58.816 45.455 0.00 0.00 35.93 5.18
6960 7680 3.129813 TCTGTACCGAAATACATGTCGCT 59.870 43.478 0.00 0.00 34.59 4.93
6961 7681 3.441163 TCTGTACCGAAATACATGTCGC 58.559 45.455 0.00 0.00 34.59 5.19
6962 7682 4.042398 CCTCTGTACCGAAATACATGTCG 58.958 47.826 0.00 0.00 34.59 4.35
6963 7683 4.098960 TCCCTCTGTACCGAAATACATGTC 59.901 45.833 0.00 0.00 34.59 3.06
6964 7684 4.028131 TCCCTCTGTACCGAAATACATGT 58.972 43.478 2.69 2.69 34.59 3.21
6965 7685 4.099573 ACTCCCTCTGTACCGAAATACATG 59.900 45.833 0.00 0.00 34.59 3.21
6966 7686 4.287552 ACTCCCTCTGTACCGAAATACAT 58.712 43.478 0.00 0.00 34.59 2.29
6967 7687 3.705051 ACTCCCTCTGTACCGAAATACA 58.295 45.455 0.00 0.00 33.96 2.29
6968 7688 5.841957 TTACTCCCTCTGTACCGAAATAC 57.158 43.478 0.00 0.00 0.00 1.89
6969 7689 9.986157 ATATATTACTCCCTCTGTACCGAAATA 57.014 33.333 0.00 0.00 0.00 1.40
6970 7690 8.896722 ATATATTACTCCCTCTGTACCGAAAT 57.103 34.615 0.00 0.00 0.00 2.17
6971 7691 9.986157 ATATATATTACTCCCTCTGTACCGAAA 57.014 33.333 0.00 0.00 0.00 3.46
6974 7694 9.001542 GCTATATATATTACTCCCTCTGTACCG 57.998 40.741 0.00 0.00 0.00 4.02
6978 7698 9.860650 CAGAGCTATATATATTACTCCCTCTGT 57.139 37.037 15.77 1.23 38.34 3.41
6979 7699 9.860650 ACAGAGCTATATATATTACTCCCTCTG 57.139 37.037 19.20 19.20 44.78 3.35
6980 7700 9.860650 CACAGAGCTATATATATTACTCCCTCT 57.139 37.037 15.77 9.25 0.00 3.69
6981 7701 8.573035 GCACAGAGCTATATATATTACTCCCTC 58.427 40.741 15.77 7.78 41.15 4.30
6982 7702 8.472007 GCACAGAGCTATATATATTACTCCCT 57.528 38.462 15.77 4.60 41.15 4.20
7007 7727 3.126514 CAGAGTGTGATTAAGCAGGCAAG 59.873 47.826 0.00 0.00 0.00 4.01
7063 7786 4.727475 ACGATAGCGATGATGATGTGTAG 58.273 43.478 7.69 0.00 41.64 2.74
7066 7789 3.831112 AGACGATAGCGATGATGATGTG 58.169 45.455 7.69 0.00 41.64 3.21
7067 7790 4.511617 AAGACGATAGCGATGATGATGT 57.488 40.909 7.69 0.00 41.64 3.06
7068 7791 6.971756 AGAATAAGACGATAGCGATGATGATG 59.028 38.462 7.69 0.00 41.64 3.07
7069 7792 7.094508 AGAATAAGACGATAGCGATGATGAT 57.905 36.000 7.69 0.00 41.64 2.45
7070 7793 6.502136 AGAATAAGACGATAGCGATGATGA 57.498 37.500 7.69 0.00 41.64 2.92
7071 7794 6.803807 TCAAGAATAAGACGATAGCGATGATG 59.196 38.462 7.69 0.00 41.64 3.07
7072 7795 6.914259 TCAAGAATAAGACGATAGCGATGAT 58.086 36.000 7.69 0.00 41.64 2.45
7234 7959 4.047822 CCACTATCAGATGACGAGAAAGC 58.952 47.826 0.00 0.00 0.00 3.51
7240 7965 2.735151 ACACCCACTATCAGATGACGA 58.265 47.619 0.00 0.00 0.00 4.20
7242 7967 3.055094 ACCAACACCCACTATCAGATGAC 60.055 47.826 0.00 0.00 0.00 3.06
7325 8050 0.039527 GTTCCCATGGTTGTTCACGC 60.040 55.000 11.73 0.00 0.00 5.34
7456 8185 5.392057 GGCAGGAAAAACTGATAAGCTACAC 60.392 44.000 0.00 0.00 40.97 2.90
7475 8204 1.813513 ATGAAGAAACGACAGGCAGG 58.186 50.000 0.00 0.00 0.00 4.85
7477 8206 5.705441 AGAAATAATGAAGAAACGACAGGCA 59.295 36.000 0.00 0.00 0.00 4.75
7492 8221 4.811024 TGCGTGGCTCTCTAAGAAATAATG 59.189 41.667 0.00 0.00 0.00 1.90
7496 8225 2.028112 TGTGCGTGGCTCTCTAAGAAAT 60.028 45.455 0.00 0.00 0.00 2.17
7498 8227 0.966179 TGTGCGTGGCTCTCTAAGAA 59.034 50.000 0.00 0.00 0.00 2.52
7500 8229 1.071605 GTTGTGCGTGGCTCTCTAAG 58.928 55.000 0.00 0.00 0.00 2.18
7517 8246 2.561569 CGAAGACAACACCCTGAAGTT 58.438 47.619 0.00 0.00 0.00 2.66
7537 8281 4.247380 CTCCCATCTCAGCGGGGC 62.247 72.222 0.00 0.00 43.29 5.80
7561 8306 1.663695 ACACACACACCAACAGCTAC 58.336 50.000 0.00 0.00 0.00 3.58
7675 8420 6.821665 GGATATGTACATTGTTACACACACCT 59.178 38.462 14.77 0.00 33.98 4.00
7700 8445 2.422597 TGGACAACTTTGCTATCACGG 58.577 47.619 0.00 0.00 0.00 4.94
7757 8502 0.234884 GTAAGAACCAGTGCGTGCAC 59.765 55.000 16.91 16.91 46.50 4.57
7777 8522 1.975680 GTTCCCGGCCTGGATCTTATA 59.024 52.381 17.64 0.00 42.00 0.98
7778 8523 0.765510 GTTCCCGGCCTGGATCTTAT 59.234 55.000 17.64 0.00 42.00 1.73
7803 8548 3.667726 CGATGACATGCTCTGTTCTATCG 59.332 47.826 0.00 14.20 38.54 2.92
7823 8568 3.128415 CCAACCAATGCATATCACAACGA 59.872 43.478 0.00 0.00 0.00 3.85
7824 8569 3.437428 CCAACCAATGCATATCACAACG 58.563 45.455 0.00 0.00 0.00 4.10
7825 8570 3.446873 TCCCAACCAATGCATATCACAAC 59.553 43.478 0.00 0.00 0.00 3.32
7826 8571 3.706183 TCCCAACCAATGCATATCACAA 58.294 40.909 0.00 0.00 0.00 3.33
7827 8572 3.378861 TCCCAACCAATGCATATCACA 57.621 42.857 0.00 0.00 0.00 3.58
7828 8573 4.082571 GCTATCCCAACCAATGCATATCAC 60.083 45.833 0.00 0.00 0.00 3.06
7830 8575 4.338879 AGCTATCCCAACCAATGCATATC 58.661 43.478 0.00 0.00 0.00 1.63
7831 8576 4.393239 AGCTATCCCAACCAATGCATAT 57.607 40.909 0.00 0.00 0.00 1.78
7832 8577 3.882102 AGCTATCCCAACCAATGCATA 57.118 42.857 0.00 0.00 0.00 3.14
7833 8578 2.761786 AGCTATCCCAACCAATGCAT 57.238 45.000 0.00 0.00 0.00 3.96
7855 8601 1.219393 GCTAACCTTCTGCCGAGCT 59.781 57.895 0.00 0.00 0.00 4.09
7879 8625 2.884639 ACTGTGTTCTGTATTTGTGCCC 59.115 45.455 0.00 0.00 0.00 5.36
7892 8638 4.130118 AGACTCACATTTCCACTGTGTTC 58.870 43.478 7.08 2.65 43.53 3.18
7912 8658 0.541392 CCGTCATGACCCAATGGAGA 59.459 55.000 20.03 0.00 34.81 3.71
7927 8673 1.869132 GGTTGGTTCAACTGTACCGTC 59.131 52.381 10.10 0.00 43.14 4.79
7930 8676 2.645802 TGTGGTTGGTTCAACTGTACC 58.354 47.619 10.10 0.00 43.14 3.34
8028 8796 6.502074 AGAGAGGAAGAAAGGTAAGTTGTT 57.498 37.500 0.00 0.00 0.00 2.83
8030 8798 6.428465 GGAAAGAGAGGAAGAAAGGTAAGTTG 59.572 42.308 0.00 0.00 0.00 3.16
8031 8799 6.466038 GGGAAAGAGAGGAAGAAAGGTAAGTT 60.466 42.308 0.00 0.00 0.00 2.66
8033 8801 5.492895 GGGAAAGAGAGGAAGAAAGGTAAG 58.507 45.833 0.00 0.00 0.00 2.34
8034 8802 4.288887 GGGGAAAGAGAGGAAGAAAGGTAA 59.711 45.833 0.00 0.00 0.00 2.85
8038 8841 3.560239 GGTGGGGAAAGAGAGGAAGAAAG 60.560 52.174 0.00 0.00 0.00 2.62
8077 8880 9.825109 TGGTGTTACGAAATCAATCAATCTATA 57.175 29.630 0.00 0.00 0.00 1.31
8078 8881 8.731275 TGGTGTTACGAAATCAATCAATCTAT 57.269 30.769 0.00 0.00 0.00 1.98
8079 8882 8.038351 TCTGGTGTTACGAAATCAATCAATCTA 58.962 33.333 0.00 0.00 0.00 1.98
8080 8883 6.878923 TCTGGTGTTACGAAATCAATCAATCT 59.121 34.615 0.00 0.00 0.00 2.40
8081 8884 7.072177 TCTGGTGTTACGAAATCAATCAATC 57.928 36.000 0.00 0.00 0.00 2.67
8124 8931 6.349363 CCACAGTAGCTATTTCCCTTTTTGTC 60.349 42.308 0.00 0.00 0.00 3.18
8164 8975 6.990939 GGGTAGAATAAGGTCAGGTGATTAAC 59.009 42.308 0.00 0.00 0.00 2.01
8246 9065 5.906113 ACTTCGTCTACTTCATGATCTGT 57.094 39.130 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.