Multiple sequence alignment - TraesCS4A01G282700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G282700 chr4A 100.000 4409 0 0 1 4409 590106464 590102056 0.000000e+00 8142.0
1 TraesCS4A01G282700 chr4A 85.714 105 14 1 1514 1617 590104739 590104635 4.660000e-20 110.0
2 TraesCS4A01G282700 chr4A 85.714 105 14 1 1726 1830 590104951 590104848 4.660000e-20 110.0
3 TraesCS4A01G282700 chr4D 93.403 2577 113 24 1386 3916 12526736 12529301 0.000000e+00 3764.0
4 TraesCS4A01G282700 chr4D 93.911 1708 84 9 1996 3694 12535562 12537258 0.000000e+00 2560.0
5 TraesCS4A01G282700 chr4D 83.700 1319 88 48 1 1269 12525385 12526626 0.000000e+00 1127.0
6 TraesCS4A01G282700 chr4B 91.761 2561 128 34 1387 3916 22878162 22880670 0.000000e+00 3483.0
7 TraesCS4A01G282700 chr4B 82.562 562 70 19 190 730 22876858 22877412 1.860000e-128 470.0
8 TraesCS4A01G282700 chr4B 82.137 571 43 22 731 1269 22877513 22878056 6.770000e-118 435.0
9 TraesCS4A01G282700 chr4B 95.652 46 2 0 1387 1432 135817022 135816977 1.700000e-09 75.0
10 TraesCS4A01G282700 chrUn 92.819 1685 96 15 1999 3667 354805313 354803638 0.000000e+00 2418.0
11 TraesCS4A01G282700 chr3D 87.126 435 29 9 3913 4322 463694814 463694382 6.680000e-128 468.0
12 TraesCS4A01G282700 chr7D 90.196 204 16 1 4149 4348 233014983 233014780 3.380000e-66 263.0
13 TraesCS4A01G282700 chr7D 94.565 92 5 0 4257 4348 551931986 551931895 4.600000e-30 143.0
14 TraesCS4A01G282700 chr7D 90.566 53 5 0 1387 1439 265703383 265703331 2.200000e-08 71.3
15 TraesCS4A01G282700 chr6D 90.278 72 7 0 3844 3915 384221045 384220974 1.310000e-15 95.3
16 TraesCS4A01G282700 chr5B 89.333 75 7 1 3842 3916 689263875 689263948 4.700000e-15 93.5
17 TraesCS4A01G282700 chr3B 89.041 73 7 1 3844 3916 88422029 88422100 6.070000e-14 89.8
18 TraesCS4A01G282700 chr7B 90.769 65 6 0 3845 3909 501556751 501556815 2.180000e-13 87.9
19 TraesCS4A01G282700 chr7B 89.286 56 6 0 1387 1442 383604212 383604157 2.200000e-08 71.3
20 TraesCS4A01G282700 chr7B 89.286 56 6 0 1387 1442 443312308 443312253 2.200000e-08 71.3
21 TraesCS4A01G282700 chr7B 89.286 56 6 0 1387 1442 687657820 687657765 2.200000e-08 71.3
22 TraesCS4A01G282700 chr1B 89.041 73 5 3 3845 3916 12810695 12810765 2.180000e-13 87.9
23 TraesCS4A01G282700 chr1B 89.231 65 7 0 3843 3907 73240179 73240243 1.020000e-11 82.4
24 TraesCS4A01G282700 chr6B 85.714 84 9 2 3835 3916 306798722 306798804 7.860000e-13 86.1
25 TraesCS4A01G282700 chr7A 89.286 56 6 0 1387 1442 290922163 290922108 2.200000e-08 71.3
26 TraesCS4A01G282700 chr2B 93.617 47 3 0 1387 1433 166470860 166470906 2.200000e-08 71.3
27 TraesCS4A01G282700 chr2B 92.157 51 3 1 1386 1435 522088157 522088207 2.200000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G282700 chr4A 590102056 590106464 4408 True 2787.333333 8142 90.476000 1 4409 3 chr4A.!!$R1 4408
1 TraesCS4A01G282700 chr4D 12535562 12537258 1696 False 2560.000000 2560 93.911000 1996 3694 1 chr4D.!!$F1 1698
2 TraesCS4A01G282700 chr4D 12525385 12529301 3916 False 2445.500000 3764 88.551500 1 3916 2 chr4D.!!$F2 3915
3 TraesCS4A01G282700 chr4B 22876858 22880670 3812 False 1462.666667 3483 85.486667 190 3916 3 chr4B.!!$F1 3726
4 TraesCS4A01G282700 chrUn 354803638 354805313 1675 True 2418.000000 2418 92.819000 1999 3667 1 chrUn.!!$R1 1668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.107214 GAATGGTCCCGGCAGATCAA 60.107 55.0 0.0 0.0 28.77 2.57 F
1096 1254 0.179145 CGGCTCCTACAAGGTACGTG 60.179 60.0 0.0 0.0 45.09 4.49 F
1168 1327 0.397254 TCTCGACCCCCATTCTCTCC 60.397 60.0 0.0 0.0 0.00 3.71 F
1667 1885 0.871722 TTGTGTTCAGTATGGCGTGC 59.128 50.0 0.0 0.0 36.16 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1649 1864 0.034756 AGCACGCCATACTGAACACA 59.965 50.000 0.00 0.0 0.00 3.72 R
2951 3226 0.101759 CTGCTGCAGTGTTGTGCTTT 59.898 50.000 21.21 0.0 44.32 3.51 R
3396 3671 0.936297 GCAAACTTCAAGTGGCAGCG 60.936 55.000 9.09 0.0 31.88 5.18 R
3621 3901 1.468520 CACGGTGGCCATTTACTTCAG 59.531 52.381 9.72 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.107214 GAATGGTCCCGGCAGATCAA 60.107 55.000 0.00 0.00 28.77 2.57
49 50 0.181350 GTCCCGGCAGATCAATCCTT 59.819 55.000 0.00 0.00 0.00 3.36
57 58 2.831333 CAGATCAATCCTTCGTGAGGG 58.169 52.381 0.00 0.00 46.31 4.30
72 73 2.550180 GTGAGGGAGAAGTGCTTTGTTC 59.450 50.000 0.00 0.00 0.00 3.18
74 75 2.810852 GAGGGAGAAGTGCTTTGTTCTG 59.189 50.000 0.00 0.00 33.04 3.02
84 85 1.067060 GCTTTGTTCTGTTTCCGCCTT 59.933 47.619 0.00 0.00 0.00 4.35
91 92 3.140325 TCTGTTTCCGCCTTGAAGATT 57.860 42.857 0.00 0.00 0.00 2.40
98 99 2.555123 GCCTTGAAGATTGTGGCGA 58.445 52.632 0.00 0.00 33.96 5.54
103 104 4.559153 CCTTGAAGATTGTGGCGAAAAAT 58.441 39.130 0.00 0.00 0.00 1.82
104 105 4.990426 CCTTGAAGATTGTGGCGAAAAATT 59.010 37.500 0.00 0.00 0.00 1.82
110 111 4.925054 AGATTGTGGCGAAAAATTCATGTG 59.075 37.500 0.00 0.00 0.00 3.21
152 153 8.410673 TTTAGGGTAAAATATGACAAGTTGCA 57.589 30.769 1.81 2.57 0.00 4.08
155 156 5.092781 GGTAAAATATGACAAGTTGCACCG 58.907 41.667 1.81 0.00 0.00 4.94
168 169 2.125350 CACCGGAGAGAGGCAAGC 60.125 66.667 9.46 0.00 0.00 4.01
241 243 4.447342 CCCCACATGCACCTCCCC 62.447 72.222 0.00 0.00 0.00 4.81
279 281 1.493871 CCTGGCTCTCTTCCCATGAAT 59.506 52.381 0.00 0.00 0.00 2.57
320 322 5.874093 TCTTCTTCTGATTTTCCAAGCTCT 58.126 37.500 0.00 0.00 0.00 4.09
342 344 7.625185 GCTCTGAATAACTAGTTTCTTTGCTGG 60.625 40.741 14.49 0.00 0.00 4.85
356 361 9.516314 GTTTCTTTGCTGGTATTATTAATGGTC 57.484 33.333 0.00 0.00 0.00 4.02
357 362 8.815565 TTCTTTGCTGGTATTATTAATGGTCA 57.184 30.769 0.00 0.00 0.00 4.02
359 364 9.066892 TCTTTGCTGGTATTATTAATGGTCATC 57.933 33.333 0.00 0.00 0.00 2.92
364 369 9.899226 GCTGGTATTATTAATGGTCATCTTTTC 57.101 33.333 0.00 0.00 0.00 2.29
389 394 4.469469 TTTTTCTGACAATCCCCTCCTT 57.531 40.909 0.00 0.00 0.00 3.36
402 407 1.207089 CCCTCCTTCGTTGCTACATGA 59.793 52.381 0.00 0.00 0.00 3.07
518 548 1.168407 CGCATCCATCACCACCATCC 61.168 60.000 0.00 0.00 0.00 3.51
530 560 3.716195 CCATCCAGACCCGCCACA 61.716 66.667 0.00 0.00 0.00 4.17
602 633 1.844497 GCCCCTCACCTTAGGTAACAT 59.156 52.381 2.52 0.00 41.41 2.71
623 654 2.125753 GCAGCCAGAGACGAGTGG 60.126 66.667 0.00 0.00 36.85 4.00
631 662 1.081376 GAGACGAGTGGGACGTGTG 60.081 63.158 0.00 0.00 43.97 3.82
692 723 9.567776 TCATGGAGACTTTTTCTATACACAAAA 57.432 29.630 0.00 0.00 33.22 2.44
715 746 4.031611 AGTAGGTCCCATGGAGACTTAAC 58.968 47.826 24.06 19.70 34.56 2.01
721 752 4.165372 GTCCCATGGAGACTTAACCCATTA 59.835 45.833 15.22 0.00 38.53 1.90
729 861 7.410174 TGGAGACTTAACCCATTATTTGACAT 58.590 34.615 0.00 0.00 0.00 3.06
807 939 3.124921 CATGGTTGCCCCGTCGTC 61.125 66.667 0.00 0.00 35.15 4.20
817 949 2.582498 CCGTCGTCGCCTTCATCC 60.582 66.667 0.00 0.00 35.54 3.51
957 1110 0.518636 CATCAATAAGCATCCCGCCG 59.481 55.000 0.00 0.00 44.04 6.46
958 1111 1.237285 ATCAATAAGCATCCCGCCGC 61.237 55.000 0.00 0.00 44.04 6.53
959 1112 2.972505 AATAAGCATCCCGCCGCG 60.973 61.111 5.59 5.59 44.04 6.46
982 1135 2.372264 GCCAAGATCCAAGAAGCATCA 58.628 47.619 0.00 0.00 0.00 3.07
986 1140 3.278668 AGATCCAAGAAGCATCACAGG 57.721 47.619 0.00 0.00 0.00 4.00
1096 1254 0.179145 CGGCTCCTACAAGGTACGTG 60.179 60.000 0.00 0.00 45.09 4.49
1168 1327 0.397254 TCTCGACCCCCATTCTCTCC 60.397 60.000 0.00 0.00 0.00 3.71
1220 1395 1.840061 CGATGCGGATTCTCGTTCG 59.160 57.895 0.00 0.00 34.08 3.95
1234 1409 4.102815 TTCGCCCGCCATTGCCTA 62.103 61.111 0.00 0.00 0.00 3.93
1250 1425 1.750682 GCCTATTTTGCTGGATCCCGT 60.751 52.381 9.90 0.00 0.00 5.28
1331 1534 1.602851 GTGCAGTGCAGATCCATGATC 59.397 52.381 20.42 0.00 40.08 2.92
1352 1555 4.011023 TCTGTACAGTAGTTCTGAGCCTC 58.989 47.826 21.99 0.00 46.27 4.70
1355 1558 4.587262 TGTACAGTAGTTCTGAGCCTCAAA 59.413 41.667 3.49 0.00 46.27 2.69
1356 1559 4.899352 ACAGTAGTTCTGAGCCTCAAAT 57.101 40.909 3.49 0.00 46.27 2.32
1357 1560 6.436218 TGTACAGTAGTTCTGAGCCTCAAATA 59.564 38.462 3.49 0.00 46.27 1.40
1358 1561 6.552445 ACAGTAGTTCTGAGCCTCAAATAT 57.448 37.500 3.49 0.00 46.27 1.28
1359 1562 6.344500 ACAGTAGTTCTGAGCCTCAAATATG 58.656 40.000 3.49 0.00 46.27 1.78
1360 1563 6.070538 ACAGTAGTTCTGAGCCTCAAATATGT 60.071 38.462 3.49 0.00 46.27 2.29
1361 1564 6.820656 CAGTAGTTCTGAGCCTCAAATATGTT 59.179 38.462 0.00 0.00 46.27 2.71
1362 1565 6.820656 AGTAGTTCTGAGCCTCAAATATGTTG 59.179 38.462 0.00 0.00 0.00 3.33
1363 1566 4.946157 AGTTCTGAGCCTCAAATATGTTGG 59.054 41.667 0.00 0.00 0.00 3.77
1364 1567 3.889815 TCTGAGCCTCAAATATGTTGGG 58.110 45.455 0.00 0.00 0.00 4.12
1365 1568 2.954318 CTGAGCCTCAAATATGTTGGGG 59.046 50.000 10.52 10.52 42.94 4.96
1370 1573 4.758773 CCTCAAATATGTTGGGGCAAAT 57.241 40.909 4.31 0.00 32.60 2.32
1371 1574 4.696455 CCTCAAATATGTTGGGGCAAATC 58.304 43.478 4.31 0.00 32.60 2.17
1372 1575 4.161942 CCTCAAATATGTTGGGGCAAATCA 59.838 41.667 4.31 0.00 32.60 2.57
1373 1576 5.163280 CCTCAAATATGTTGGGGCAAATCAT 60.163 40.000 4.31 0.00 32.60 2.45
1374 1577 5.916318 TCAAATATGTTGGGGCAAATCATC 58.084 37.500 0.00 0.00 0.00 2.92
1375 1578 5.662208 TCAAATATGTTGGGGCAAATCATCT 59.338 36.000 0.00 0.00 0.00 2.90
1376 1579 6.838090 TCAAATATGTTGGGGCAAATCATCTA 59.162 34.615 0.00 0.00 0.00 1.98
1377 1580 7.344093 TCAAATATGTTGGGGCAAATCATCTAA 59.656 33.333 0.00 0.00 0.00 2.10
1378 1581 7.860649 AATATGTTGGGGCAAATCATCTAAT 57.139 32.000 0.00 0.00 0.00 1.73
1379 1582 5.796424 ATGTTGGGGCAAATCATCTAATC 57.204 39.130 0.00 0.00 0.00 1.75
1380 1583 3.960102 TGTTGGGGCAAATCATCTAATCC 59.040 43.478 0.00 0.00 0.00 3.01
1381 1584 3.243359 TGGGGCAAATCATCTAATCCC 57.757 47.619 0.00 0.00 0.00 3.85
1382 1585 2.529632 GGGGCAAATCATCTAATCCCC 58.470 52.381 0.00 0.00 44.32 4.81
1383 1586 2.529632 GGGCAAATCATCTAATCCCCC 58.470 52.381 0.00 0.00 0.00 5.40
1426 1629 6.710295 ACTGAAAGGCTTTGTTTTTCTTGTTT 59.290 30.769 18.79 0.00 39.30 2.83
1433 1639 6.129221 GGCTTTGTTTTTCTTGTTTTTGTTGC 60.129 34.615 0.00 0.00 0.00 4.17
1443 1649 2.270047 GTTTTTGTTGCTGCTGCTGAA 58.730 42.857 17.00 0.52 40.48 3.02
1461 1667 1.481056 AAAGACCAGTAGCGCAGGGT 61.481 55.000 11.47 11.38 36.05 4.34
1503 1712 8.034804 GTGAAACCCATTAGCATTCTAAAACAT 58.965 33.333 0.00 0.00 38.21 2.71
1506 1715 7.277174 ACCCATTAGCATTCTAAAACATAGC 57.723 36.000 0.00 0.00 38.21 2.97
1523 1732 2.622064 AGCGAATGGTCTGGATAACC 57.378 50.000 0.00 0.00 37.31 2.85
1567 1779 5.726679 CGAATCAAAACCGTAAGACGAATTC 59.273 40.000 0.00 0.00 46.05 2.17
1573 1785 2.034124 CCGTAAGACGAATTCCCCCTA 58.966 52.381 0.00 0.00 46.05 3.53
1581 1793 1.618447 AATTCCCCCTACCGTGCCT 60.618 57.895 0.00 0.00 0.00 4.75
1584 1796 3.327404 CCCCCTACCGTGCCTGTT 61.327 66.667 0.00 0.00 0.00 3.16
1663 1881 5.817296 TCAGTATGATTGTGTTCAGTATGGC 59.183 40.000 0.00 0.00 42.56 4.40
1667 1885 0.871722 TTGTGTTCAGTATGGCGTGC 59.128 50.000 0.00 0.00 36.16 5.34
1719 1974 5.916883 GCACATGGCACTGCTTTATAAATAG 59.083 40.000 10.93 3.59 43.97 1.73
1723 1978 6.001449 TGGCACTGCTTTATAAATAGAGGT 57.999 37.500 13.54 1.95 0.00 3.85
1724 1979 6.055588 TGGCACTGCTTTATAAATAGAGGTC 58.944 40.000 13.54 8.81 0.00 3.85
1915 2170 3.445687 CCGCACATGGCACTGCAT 61.446 61.111 16.75 0.00 45.17 3.96
1923 2178 2.947652 ACATGGCACTGCATTCTGATAC 59.052 45.455 2.82 0.00 0.00 2.24
2010 2267 4.920376 ACAAACAATCACTGTGTAACTGC 58.080 39.130 7.79 0.00 39.67 4.40
2031 2288 3.304659 GCGCACTTTCTCCAGAATTTTCA 60.305 43.478 0.30 0.00 33.54 2.69
2037 2294 5.595952 ACTTTCTCCAGAATTTTCACAAGCT 59.404 36.000 0.00 0.00 33.54 3.74
2216 2480 0.896923 TGCATTCCCATTCCAAGTGC 59.103 50.000 0.00 0.00 0.00 4.40
2226 2493 1.398958 TTCCAAGTGCCAAGTTGCCC 61.399 55.000 0.00 0.00 35.69 5.36
2229 2496 2.501602 AAGTGCCAAGTTGCCCAGC 61.502 57.895 0.00 0.00 0.00 4.85
2309 2576 7.665559 TGATCATGTAAGGTTCTAAAGTGCTTT 59.334 33.333 0.00 2.60 36.63 3.51
2310 2577 7.435068 TCATGTAAGGTTCTAAAGTGCTTTC 57.565 36.000 0.00 0.00 34.23 2.62
2311 2578 6.995686 TCATGTAAGGTTCTAAAGTGCTTTCA 59.004 34.615 0.00 0.00 34.23 2.69
2316 2584 5.140454 AGGTTCTAAAGTGCTTTCAATGGT 58.860 37.500 0.00 0.00 34.23 3.55
2331 2599 3.892588 TCAATGGTTTAAAAGGGCTCGTT 59.107 39.130 0.00 0.00 0.00 3.85
2348 2616 5.348986 GCTCGTTACTGTGATTTCTCCATA 58.651 41.667 0.00 0.00 0.00 2.74
2354 2622 8.141909 CGTTACTGTGATTTCTCCATATTCCTA 58.858 37.037 0.00 0.00 0.00 2.94
2427 2695 3.578688 GTTTTTGCCATGGTCATGAGAC 58.421 45.455 14.67 5.96 44.21 3.36
2438 2706 6.708054 CCATGGTCATGAGACTTAAGGAATAC 59.292 42.308 12.09 0.00 44.36 1.89
2484 2752 7.953493 CCTTCTCTTAATCCTAGGTCCTCTAAT 59.047 40.741 9.08 0.00 0.00 1.73
2542 2810 7.225734 GGAAGAGCATTAACAGGAGAAATACTC 59.774 40.741 0.00 0.00 44.24 2.59
2566 2834 5.229423 GTTAATCAGAGCAATGCCAAAACA 58.771 37.500 0.00 0.00 0.00 2.83
2603 2873 4.380531 TCGATGAGATGCCTAAAACCATC 58.619 43.478 0.00 0.00 38.45 3.51
2750 3020 2.428484 CCCCTATCTCTGGACTTGGGAT 60.428 54.545 0.00 0.00 33.39 3.85
3153 3428 9.574516 AAACTTATCCATGAGAAAGTTTGTAGT 57.425 29.630 21.14 6.63 45.55 2.73
3175 3450 1.884579 CAGCTTTCCTGCATCTTGTGT 59.115 47.619 0.00 0.00 34.21 3.72
3486 3761 5.304101 TGTTGTGCTTAAATTCCCATGAACT 59.696 36.000 0.00 0.00 32.13 3.01
3574 3854 3.737663 GCTTGCATGGTTGTTGAAACTCA 60.738 43.478 1.34 0.00 0.00 3.41
3599 3879 4.035091 TGCTGATGTACTGTGTTGTGAAAC 59.965 41.667 0.00 0.00 37.35 2.78
3638 3918 3.073274 ACTCTGAAGTAAATGGCCACC 57.927 47.619 8.16 0.00 32.59 4.61
3829 4110 4.638865 AGTTTGTTTTGGTAGTGTGGAGTC 59.361 41.667 0.00 0.00 0.00 3.36
3859 4140 2.108168 CTTCATACTTCCTCCGTCCCA 58.892 52.381 0.00 0.00 0.00 4.37
3870 4151 3.007635 CCTCCGTCCCAAATTACTTGTC 58.992 50.000 0.00 0.00 32.65 3.18
3871 4152 3.007635 CTCCGTCCCAAATTACTTGTCC 58.992 50.000 0.00 0.00 32.65 4.02
3918 4199 8.971321 TGTATCTAGAATTAAAAATACGTCGGC 58.029 33.333 0.00 0.00 0.00 5.54
3919 4200 6.500775 TCTAGAATTAAAAATACGTCGGCG 57.499 37.500 8.42 8.42 44.93 6.46
3920 4201 3.931824 AGAATTAAAAATACGTCGGCGC 58.068 40.909 10.50 0.00 42.83 6.53
3921 4202 2.742954 ATTAAAAATACGTCGGCGCC 57.257 45.000 19.07 19.07 42.83 6.53
3922 4203 0.726256 TTAAAAATACGTCGGCGCCC 59.274 50.000 23.46 6.76 42.83 6.13
3923 4204 0.108233 TAAAAATACGTCGGCGCCCT 60.108 50.000 23.46 3.02 42.83 5.19
3924 4205 1.363885 AAAAATACGTCGGCGCCCTC 61.364 55.000 23.46 13.30 42.83 4.30
3925 4206 3.728279 AAATACGTCGGCGCCCTCC 62.728 63.158 23.46 7.80 42.83 4.30
3934 4215 4.154347 GCGCCCTCCTCTCCACTG 62.154 72.222 0.00 0.00 0.00 3.66
3935 4216 4.154347 CGCCCTCCTCTCCACTGC 62.154 72.222 0.00 0.00 0.00 4.40
3936 4217 2.686835 GCCCTCCTCTCCACTGCT 60.687 66.667 0.00 0.00 0.00 4.24
3937 4218 3.028921 GCCCTCCTCTCCACTGCTG 62.029 68.421 0.00 0.00 0.00 4.41
3938 4219 2.583520 CCTCCTCTCCACTGCTGC 59.416 66.667 0.00 0.00 0.00 5.25
3939 4220 2.583520 CTCCTCTCCACTGCTGCC 59.416 66.667 0.00 0.00 0.00 4.85
3940 4221 2.203832 TCCTCTCCACTGCTGCCA 60.204 61.111 0.00 0.00 0.00 4.92
3941 4222 2.046507 CCTCTCCACTGCTGCCAC 60.047 66.667 0.00 0.00 0.00 5.01
3942 4223 2.046507 CTCTCCACTGCTGCCACC 60.047 66.667 0.00 0.00 0.00 4.61
3943 4224 3.947132 CTCTCCACTGCTGCCACCG 62.947 68.421 0.00 0.00 0.00 4.94
3991 4272 2.354729 CCGAAGGCAACATGGGGA 59.645 61.111 0.00 0.00 46.14 4.81
3992 4273 1.750399 CCGAAGGCAACATGGGGAG 60.750 63.158 0.00 0.00 46.14 4.30
3993 4274 1.299648 CGAAGGCAACATGGGGAGA 59.700 57.895 0.00 0.00 41.41 3.71
3994 4275 0.107017 CGAAGGCAACATGGGGAGAT 60.107 55.000 0.00 0.00 41.41 2.75
3995 4276 1.685148 GAAGGCAACATGGGGAGATC 58.315 55.000 0.00 0.00 41.41 2.75
3996 4277 0.259938 AAGGCAACATGGGGAGATCC 59.740 55.000 0.00 0.00 41.41 3.36
3997 4278 1.526917 GGCAACATGGGGAGATCCG 60.527 63.158 0.00 0.00 36.71 4.18
4040 4321 3.902063 CGTGAGATGCGCCGTTCG 61.902 66.667 4.18 0.00 42.12 3.95
4041 4322 2.809601 GTGAGATGCGCCGTTCGT 60.810 61.111 4.18 0.00 41.07 3.85
4042 4323 2.809174 TGAGATGCGCCGTTCGTG 60.809 61.111 4.18 0.00 41.07 4.35
4043 4324 3.554692 GAGATGCGCCGTTCGTGG 61.555 66.667 4.18 0.00 41.07 4.94
4078 4359 3.818787 GCGGGCTGCATTCACCTG 61.819 66.667 14.74 0.00 45.45 4.00
4079 4360 3.818787 CGGGCTGCATTCACCTGC 61.819 66.667 0.50 0.00 42.62 4.85
4080 4361 3.455469 GGGCTGCATTCACCTGCC 61.455 66.667 0.50 2.37 43.94 4.85
4081 4362 2.362120 GGCTGCATTCACCTGCCT 60.362 61.111 0.50 0.00 42.13 4.75
4082 4363 2.413142 GGCTGCATTCACCTGCCTC 61.413 63.158 0.50 0.00 42.13 4.70
4083 4364 2.413142 GCTGCATTCACCTGCCTCC 61.413 63.158 0.00 0.00 41.58 4.30
4084 4365 1.751927 CTGCATTCACCTGCCTCCC 60.752 63.158 0.00 0.00 41.58 4.30
4085 4366 2.825836 GCATTCACCTGCCTCCCG 60.826 66.667 0.00 0.00 36.10 5.14
4086 4367 2.671070 CATTCACCTGCCTCCCGT 59.329 61.111 0.00 0.00 0.00 5.28
4087 4368 1.746615 CATTCACCTGCCTCCCGTG 60.747 63.158 0.00 0.00 0.00 4.94
4088 4369 2.971598 ATTCACCTGCCTCCCGTGG 61.972 63.158 0.00 0.00 0.00 4.94
4098 4379 4.242586 TCCCGTGGGAGTGGTGGA 62.243 66.667 2.72 0.00 39.76 4.02
4099 4380 3.009115 CCCGTGGGAGTGGTGGAT 61.009 66.667 0.00 0.00 37.50 3.41
4100 4381 2.268920 CCGTGGGAGTGGTGGATG 59.731 66.667 0.00 0.00 0.00 3.51
4101 4382 2.436646 CGTGGGAGTGGTGGATGC 60.437 66.667 0.00 0.00 0.00 3.91
4102 4383 2.756400 GTGGGAGTGGTGGATGCA 59.244 61.111 0.00 0.00 0.00 3.96
4103 4384 1.304282 GTGGGAGTGGTGGATGCAT 59.696 57.895 0.00 0.00 0.00 3.96
4104 4385 1.033746 GTGGGAGTGGTGGATGCATG 61.034 60.000 2.46 0.00 0.00 4.06
4105 4386 1.454479 GGGAGTGGTGGATGCATGG 60.454 63.158 2.46 0.00 0.00 3.66
4106 4387 2.123428 GGAGTGGTGGATGCATGGC 61.123 63.158 2.46 0.00 0.00 4.40
4107 4388 2.043652 AGTGGTGGATGCATGGCC 60.044 61.111 2.46 0.00 0.00 5.36
4108 4389 3.520862 GTGGTGGATGCATGGCCG 61.521 66.667 2.46 0.00 0.00 6.13
4109 4390 4.818863 TGGTGGATGCATGGCCGG 62.819 66.667 2.46 0.00 0.00 6.13
4114 4395 4.034258 GATGCATGGCCGGCGATG 62.034 66.667 38.17 38.17 35.65 3.84
4135 4416 4.194720 GACGCGGACGAGCCAGAT 62.195 66.667 12.47 0.00 43.93 2.90
4136 4417 4.194720 ACGCGGACGAGCCAGATC 62.195 66.667 12.47 0.00 43.93 2.75
4137 4418 4.933064 CGCGGACGAGCCAGATCC 62.933 72.222 0.00 0.00 43.93 3.36
4140 4421 2.105128 GGACGAGCCAGATCCGTG 59.895 66.667 0.00 0.00 36.60 4.94
4141 4422 2.583593 GACGAGCCAGATCCGTGC 60.584 66.667 0.00 0.00 36.60 5.34
4142 4423 4.498520 ACGAGCCAGATCCGTGCG 62.499 66.667 0.00 0.00 35.02 5.34
4143 4424 4.498520 CGAGCCAGATCCGTGCGT 62.499 66.667 0.00 0.00 0.00 5.24
4144 4425 2.583593 GAGCCAGATCCGTGCGTC 60.584 66.667 0.00 0.00 0.00 5.19
4145 4426 4.148825 AGCCAGATCCGTGCGTCC 62.149 66.667 0.00 0.00 0.00 4.79
4146 4427 4.148825 GCCAGATCCGTGCGTCCT 62.149 66.667 0.00 0.00 0.00 3.85
4147 4428 2.579201 CCAGATCCGTGCGTCCTT 59.421 61.111 0.00 0.00 0.00 3.36
4148 4429 1.811266 CCAGATCCGTGCGTCCTTG 60.811 63.158 0.00 0.00 0.00 3.61
4149 4430 1.811266 CAGATCCGTGCGTCCTTGG 60.811 63.158 0.00 0.00 0.00 3.61
4150 4431 3.195698 GATCCGTGCGTCCTTGGC 61.196 66.667 0.00 0.00 0.00 4.52
4151 4432 3.665675 GATCCGTGCGTCCTTGGCT 62.666 63.158 0.00 0.00 0.00 4.75
4152 4433 3.958147 ATCCGTGCGTCCTTGGCTG 62.958 63.158 0.00 0.00 0.00 4.85
4155 4436 3.058160 GTGCGTCCTTGGCTGCAT 61.058 61.111 0.50 0.00 39.85 3.96
4156 4437 2.747460 TGCGTCCTTGGCTGCATC 60.747 61.111 0.50 0.00 31.31 3.91
4157 4438 3.512516 GCGTCCTTGGCTGCATCC 61.513 66.667 0.00 0.00 0.00 3.51
4158 4439 2.825836 CGTCCTTGGCTGCATCCC 60.826 66.667 3.68 0.00 0.00 3.85
4159 4440 2.440980 GTCCTTGGCTGCATCCCC 60.441 66.667 3.68 0.00 0.00 4.81
4160 4441 4.113815 TCCTTGGCTGCATCCCCG 62.114 66.667 3.68 0.00 0.00 5.73
4170 4451 3.550431 CATCCCCGCGGTGGATCT 61.550 66.667 32.74 19.39 40.68 2.75
4171 4452 3.550431 ATCCCCGCGGTGGATCTG 61.550 66.667 30.99 13.96 38.20 2.90
4177 4458 4.864334 GCGGTGGATCTGGCCTGG 62.864 72.222 10.07 0.00 0.00 4.45
4178 4459 4.181010 CGGTGGATCTGGCCTGGG 62.181 72.222 10.07 0.00 0.00 4.45
4179 4460 4.512914 GGTGGATCTGGCCTGGGC 62.513 72.222 14.23 14.23 41.06 5.36
4180 4461 4.864334 GTGGATCTGGCCTGGGCG 62.864 72.222 16.08 10.45 43.06 6.13
4228 4509 3.961414 AACGCGGGGTTGGTGGAT 61.961 61.111 12.47 0.00 37.50 3.41
4229 4510 3.912745 AACGCGGGGTTGGTGGATC 62.913 63.158 12.47 0.00 37.50 3.36
4231 4512 4.404098 GCGGGGTTGGTGGATCGT 62.404 66.667 0.00 0.00 0.00 3.73
4232 4513 2.435938 CGGGGTTGGTGGATCGTG 60.436 66.667 0.00 0.00 0.00 4.35
4233 4514 2.045340 GGGGTTGGTGGATCGTGG 60.045 66.667 0.00 0.00 0.00 4.94
4234 4515 2.045340 GGGTTGGTGGATCGTGGG 60.045 66.667 0.00 0.00 0.00 4.61
4235 4516 2.754375 GGTTGGTGGATCGTGGGT 59.246 61.111 0.00 0.00 0.00 4.51
4236 4517 1.376812 GGTTGGTGGATCGTGGGTC 60.377 63.158 0.00 0.00 0.00 4.46
4237 4518 1.677552 GTTGGTGGATCGTGGGTCT 59.322 57.895 0.00 0.00 0.00 3.85
4238 4519 0.036306 GTTGGTGGATCGTGGGTCTT 59.964 55.000 0.00 0.00 0.00 3.01
4239 4520 0.036164 TTGGTGGATCGTGGGTCTTG 59.964 55.000 0.00 0.00 0.00 3.02
4240 4521 1.745489 GGTGGATCGTGGGTCTTGC 60.745 63.158 0.00 0.00 0.00 4.01
4241 4522 1.296715 GTGGATCGTGGGTCTTGCT 59.703 57.895 0.00 0.00 0.00 3.91
4242 4523 1.021390 GTGGATCGTGGGTCTTGCTG 61.021 60.000 0.00 0.00 0.00 4.41
4243 4524 2.109126 GGATCGTGGGTCTTGCTGC 61.109 63.158 0.00 0.00 0.00 5.25
4244 4525 1.375908 GATCGTGGGTCTTGCTGCA 60.376 57.895 0.00 0.00 0.00 4.41
4245 4526 1.639298 GATCGTGGGTCTTGCTGCAC 61.639 60.000 0.00 0.00 0.00 4.57
4246 4527 3.716006 CGTGGGTCTTGCTGCACG 61.716 66.667 0.00 0.00 0.00 5.34
4247 4528 4.030452 GTGGGTCTTGCTGCACGC 62.030 66.667 0.00 0.00 39.77 5.34
4279 4560 4.680237 CTGGTGCTCGCCGACCAA 62.680 66.667 0.00 0.00 41.76 3.67
4280 4561 4.680237 TGGTGCTCGCCGACCAAG 62.680 66.667 0.00 0.00 39.36 3.61
4281 4562 4.681978 GGTGCTCGCCGACCAAGT 62.682 66.667 0.00 0.00 31.97 3.16
4282 4563 3.414700 GTGCTCGCCGACCAAGTG 61.415 66.667 0.00 0.00 0.00 3.16
4283 4564 4.680237 TGCTCGCCGACCAAGTGG 62.680 66.667 0.00 0.00 42.17 4.00
4293 4574 2.266055 CCAAGTGGGTCGGAGCTC 59.734 66.667 4.71 4.71 0.00 4.09
4294 4575 2.266055 CAAGTGGGTCGGAGCTCC 59.734 66.667 23.79 23.79 0.00 4.70
4295 4576 2.203788 AAGTGGGTCGGAGCTCCA 60.204 61.111 31.67 16.40 35.14 3.86
4296 4577 2.286523 AAGTGGGTCGGAGCTCCAG 61.287 63.158 31.67 23.05 35.14 3.86
4297 4578 3.775654 GTGGGTCGGAGCTCCAGG 61.776 72.222 31.67 16.98 35.14 4.45
4315 4596 2.099062 CGCAGCGCCACTTTGATC 59.901 61.111 2.29 0.00 0.00 2.92
4316 4597 2.393768 CGCAGCGCCACTTTGATCT 61.394 57.895 2.29 0.00 0.00 2.75
4317 4598 1.136147 GCAGCGCCACTTTGATCTG 59.864 57.895 2.29 0.00 0.00 2.90
4318 4599 1.136147 CAGCGCCACTTTGATCTGC 59.864 57.895 2.29 0.00 0.00 4.26
4319 4600 2.042831 AGCGCCACTTTGATCTGCC 61.043 57.895 2.29 0.00 0.00 4.85
4320 4601 2.787249 CGCCACTTTGATCTGCCG 59.213 61.111 0.00 0.00 0.00 5.69
4321 4602 2.486966 GCCACTTTGATCTGCCGC 59.513 61.111 0.00 0.00 0.00 6.53
4322 4603 3.056313 GCCACTTTGATCTGCCGCC 62.056 63.158 0.00 0.00 0.00 6.13
4323 4604 1.377725 CCACTTTGATCTGCCGCCT 60.378 57.895 0.00 0.00 0.00 5.52
4324 4605 1.372087 CCACTTTGATCTGCCGCCTC 61.372 60.000 0.00 0.00 0.00 4.70
4325 4606 0.392193 CACTTTGATCTGCCGCCTCT 60.392 55.000 0.00 0.00 0.00 3.69
4326 4607 0.392193 ACTTTGATCTGCCGCCTCTG 60.392 55.000 0.00 0.00 0.00 3.35
4327 4608 1.078214 TTTGATCTGCCGCCTCTGG 60.078 57.895 0.00 0.00 0.00 3.86
4328 4609 2.541547 TTTGATCTGCCGCCTCTGGG 62.542 60.000 0.00 0.00 0.00 4.45
4338 4619 2.124983 CCTCTGGGCGTGATGGTG 60.125 66.667 0.00 0.00 0.00 4.17
4339 4620 2.124983 CTCTGGGCGTGATGGTGG 60.125 66.667 0.00 0.00 0.00 4.61
4340 4621 4.408821 TCTGGGCGTGATGGTGGC 62.409 66.667 0.00 0.00 0.00 5.01
4341 4622 4.415150 CTGGGCGTGATGGTGGCT 62.415 66.667 0.00 0.00 0.00 4.75
4342 4623 4.720902 TGGGCGTGATGGTGGCTG 62.721 66.667 0.00 0.00 0.00 4.85
4345 4626 3.807538 GCGTGATGGTGGCTGCTG 61.808 66.667 0.00 0.00 0.00 4.41
4346 4627 3.807538 CGTGATGGTGGCTGCTGC 61.808 66.667 7.10 7.10 38.76 5.25
4347 4628 2.360852 GTGATGGTGGCTGCTGCT 60.361 61.111 15.64 0.00 39.59 4.24
4348 4629 2.360726 TGATGGTGGCTGCTGCTG 60.361 61.111 15.64 0.77 39.59 4.41
4349 4630 3.138798 GATGGTGGCTGCTGCTGG 61.139 66.667 15.64 0.00 39.59 4.85
4350 4631 3.633609 GATGGTGGCTGCTGCTGGA 62.634 63.158 15.64 0.00 39.59 3.86
4351 4632 3.214190 ATGGTGGCTGCTGCTGGAA 62.214 57.895 15.64 0.13 39.59 3.53
4352 4633 3.060615 GGTGGCTGCTGCTGGAAG 61.061 66.667 15.64 0.00 39.59 3.46
4353 4634 2.033141 GTGGCTGCTGCTGGAAGA 59.967 61.111 15.64 0.00 39.59 2.87
4354 4635 2.039405 GTGGCTGCTGCTGGAAGAG 61.039 63.158 15.64 0.00 39.59 2.85
4355 4636 2.438075 GGCTGCTGCTGGAAGAGG 60.438 66.667 15.64 0.00 39.59 3.69
4356 4637 2.438075 GCTGCTGCTGGAAGAGGG 60.438 66.667 8.53 0.00 34.07 4.30
4357 4638 2.271497 CTGCTGCTGGAAGAGGGG 59.729 66.667 0.00 0.00 34.07 4.79
4358 4639 2.203983 TGCTGCTGGAAGAGGGGA 60.204 61.111 0.00 0.00 34.07 4.81
4359 4640 2.254737 CTGCTGCTGGAAGAGGGGAG 62.255 65.000 0.00 0.00 34.07 4.30
4360 4641 1.992277 GCTGCTGGAAGAGGGGAGA 60.992 63.158 0.00 0.00 34.07 3.71
4361 4642 1.970352 GCTGCTGGAAGAGGGGAGAG 61.970 65.000 0.00 0.00 34.07 3.20
4362 4643 0.617249 CTGCTGGAAGAGGGGAGAGT 60.617 60.000 0.00 0.00 34.07 3.24
4363 4644 0.906756 TGCTGGAAGAGGGGAGAGTG 60.907 60.000 0.00 0.00 34.07 3.51
4364 4645 0.907230 GCTGGAAGAGGGGAGAGTGT 60.907 60.000 0.00 0.00 34.07 3.55
4365 4646 1.650528 CTGGAAGAGGGGAGAGTGTT 58.349 55.000 0.00 0.00 34.07 3.32
4366 4647 1.277557 CTGGAAGAGGGGAGAGTGTTG 59.722 57.143 0.00 0.00 34.07 3.33
4367 4648 0.615850 GGAAGAGGGGAGAGTGTTGG 59.384 60.000 0.00 0.00 0.00 3.77
4368 4649 0.615850 GAAGAGGGGAGAGTGTTGGG 59.384 60.000 0.00 0.00 0.00 4.12
4369 4650 0.842467 AAGAGGGGAGAGTGTTGGGG 60.842 60.000 0.00 0.00 0.00 4.96
4370 4651 1.229529 GAGGGGAGAGTGTTGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
4371 4652 0.840722 GAGGGGAGAGTGTTGGGGAA 60.841 60.000 0.00 0.00 0.00 3.97
4372 4653 1.134438 AGGGGAGAGTGTTGGGGAAC 61.134 60.000 0.00 0.00 0.00 3.62
4373 4654 1.003718 GGGAGAGTGTTGGGGAACG 60.004 63.158 0.00 0.00 0.00 3.95
4374 4655 1.671379 GGAGAGTGTTGGGGAACGC 60.671 63.158 0.00 0.00 43.69 4.84
4388 4669 5.767816 GGGGAACGCAGTATATCAAAATT 57.232 39.130 0.00 0.00 45.00 1.82
4389 4670 6.144078 GGGGAACGCAGTATATCAAAATTT 57.856 37.500 0.00 0.00 45.00 1.82
4390 4671 6.569780 GGGGAACGCAGTATATCAAAATTTT 58.430 36.000 0.00 0.00 45.00 1.82
4391 4672 6.695713 GGGGAACGCAGTATATCAAAATTTTC 59.304 38.462 0.00 0.00 45.00 2.29
4392 4673 6.695713 GGGAACGCAGTATATCAAAATTTTCC 59.304 38.462 0.00 0.00 45.00 3.13
4393 4674 7.416326 GGGAACGCAGTATATCAAAATTTTCCT 60.416 37.037 0.00 0.00 45.00 3.36
4394 4675 8.617809 GGAACGCAGTATATCAAAATTTTCCTA 58.382 33.333 0.00 0.00 45.00 2.94
4395 4676 9.434559 GAACGCAGTATATCAAAATTTTCCTAC 57.565 33.333 0.00 1.37 45.00 3.18
4396 4677 7.627340 ACGCAGTATATCAAAATTTTCCTACG 58.373 34.615 0.00 0.67 41.94 3.51
4397 4678 7.493320 ACGCAGTATATCAAAATTTTCCTACGA 59.507 33.333 0.00 0.00 41.94 3.43
4398 4679 8.495949 CGCAGTATATCAAAATTTTCCTACGAT 58.504 33.333 0.00 3.46 0.00 3.73
4399 4680 9.813080 GCAGTATATCAAAATTTTCCTACGATC 57.187 33.333 0.00 0.00 0.00 3.69
4407 4688 9.443323 TCAAAATTTTCCTACGATCATACAAGA 57.557 29.630 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.972660 GACCATTCCCCTCCGGACAG 61.973 65.000 0.00 0.00 41.83 3.51
49 50 1.048601 AAAGCACTTCTCCCTCACGA 58.951 50.000 0.00 0.00 0.00 4.35
56 57 4.498177 GGAAACAGAACAAAGCACTTCTCC 60.498 45.833 0.00 0.00 0.00 3.71
57 58 4.602006 GGAAACAGAACAAAGCACTTCTC 58.398 43.478 0.00 0.00 0.00 2.87
72 73 2.554032 ACAATCTTCAAGGCGGAAACAG 59.446 45.455 0.00 0.00 0.00 3.16
74 75 2.351738 CCACAATCTTCAAGGCGGAAAC 60.352 50.000 0.00 0.00 0.00 2.78
84 85 5.193663 TGAATTTTTCGCCACAATCTTCA 57.806 34.783 0.00 0.00 0.00 3.02
91 92 3.998099 TCACATGAATTTTTCGCCACA 57.002 38.095 0.00 0.00 0.00 4.17
110 111 6.697395 ACCCTAAAACATGTGCCTTTAATTC 58.303 36.000 0.00 0.00 0.00 2.17
116 117 6.680148 ATTTTACCCTAAAACATGTGCCTT 57.320 33.333 0.00 0.00 40.12 4.35
145 146 1.674057 CCTCTCTCCGGTGCAACTT 59.326 57.895 0.00 0.00 36.74 2.66
148 149 2.454832 CTTGCCTCTCTCCGGTGCAA 62.455 60.000 0.00 7.61 39.42 4.08
149 150 2.922503 TTGCCTCTCTCCGGTGCA 60.923 61.111 0.00 0.00 0.00 4.57
152 153 3.764466 CGCTTGCCTCTCTCCGGT 61.764 66.667 0.00 0.00 0.00 5.28
155 156 2.817396 GCACGCTTGCCTCTCTCC 60.817 66.667 3.29 0.00 43.66 3.71
196 197 2.997315 CTGACCTGGGCCACGAGA 60.997 66.667 0.00 0.00 0.00 4.04
201 202 4.954118 ACGACCTGACCTGGGCCA 62.954 66.667 5.85 5.85 0.00 5.36
301 303 5.954296 TTCAGAGCTTGGAAAATCAGAAG 57.046 39.130 0.00 0.00 0.00 2.85
303 305 7.170965 AGTTATTCAGAGCTTGGAAAATCAGA 58.829 34.615 5.28 0.00 0.00 3.27
304 306 7.388460 AGTTATTCAGAGCTTGGAAAATCAG 57.612 36.000 5.28 0.00 0.00 2.90
305 307 8.103305 ACTAGTTATTCAGAGCTTGGAAAATCA 58.897 33.333 5.28 0.00 0.00 2.57
307 309 8.870075 AACTAGTTATTCAGAGCTTGGAAAAT 57.130 30.769 6.26 0.00 0.00 1.82
320 322 9.515226 AATACCAGCAAAGAAACTAGTTATTCA 57.485 29.630 8.92 0.00 0.00 2.57
351 356 8.237267 GTCAGAAAAATACGAAAAGATGACCAT 58.763 33.333 0.00 0.00 0.00 3.55
356 361 9.065871 GGATTGTCAGAAAAATACGAAAAGATG 57.934 33.333 0.00 0.00 0.00 2.90
357 362 8.244113 GGGATTGTCAGAAAAATACGAAAAGAT 58.756 33.333 0.00 0.00 0.00 2.40
359 364 6.806739 GGGGATTGTCAGAAAAATACGAAAAG 59.193 38.462 0.00 0.00 0.00 2.27
364 369 4.335594 GGAGGGGATTGTCAGAAAAATACG 59.664 45.833 0.00 0.00 0.00 3.06
368 373 4.407365 GAAGGAGGGGATTGTCAGAAAAA 58.593 43.478 0.00 0.00 0.00 1.94
389 394 8.227791 GTCTTCTTAATTTTCATGTAGCAACGA 58.772 33.333 0.00 0.00 0.00 3.85
495 501 0.171007 GGTGGTGATGGATGCGTTTG 59.829 55.000 0.00 0.00 0.00 2.93
496 502 0.251121 TGGTGGTGATGGATGCGTTT 60.251 50.000 0.00 0.00 0.00 3.60
497 503 0.034186 ATGGTGGTGATGGATGCGTT 60.034 50.000 0.00 0.00 0.00 4.84
518 548 3.866883 AAAATATTTGTGGCGGGTCTG 57.133 42.857 0.39 0.00 0.00 3.51
602 633 0.612174 ACTCGTCTCTGGCTGCCTTA 60.612 55.000 21.03 6.80 0.00 2.69
623 654 2.000447 GATAAGCTGGTTCACACGTCC 59.000 52.381 0.00 0.00 0.00 4.79
631 662 2.158696 AGGCAGATGGATAAGCTGGTTC 60.159 50.000 0.00 0.00 0.00 3.62
684 715 4.351407 TCCATGGGACCTACTTTTTGTGTA 59.649 41.667 13.02 0.00 0.00 2.90
686 717 3.758554 CTCCATGGGACCTACTTTTTGTG 59.241 47.826 13.02 0.00 0.00 3.33
688 719 4.010349 GTCTCCATGGGACCTACTTTTTG 58.990 47.826 13.02 0.00 0.00 2.44
692 723 2.950990 AGTCTCCATGGGACCTACTT 57.049 50.000 22.47 7.62 34.56 2.24
697 728 1.212195 GGGTTAAGTCTCCATGGGACC 59.788 57.143 22.47 14.20 34.56 4.46
715 746 6.066690 AGTCTCCATGATGTCAAATAATGGG 58.933 40.000 0.00 0.00 38.65 4.00
721 752 7.348815 TGGATTAAGTCTCCATGATGTCAAAT 58.651 34.615 0.00 0.00 37.87 2.32
941 1094 2.639286 GCGGCGGGATGCTTATTG 59.361 61.111 9.78 0.00 45.43 1.90
957 1110 3.880846 CTTGGATCTTGGCGCCGC 61.881 66.667 23.90 0.00 0.00 6.53
958 1111 1.709147 CTTCTTGGATCTTGGCGCCG 61.709 60.000 23.90 8.74 0.00 6.46
959 1112 1.997928 GCTTCTTGGATCTTGGCGCC 61.998 60.000 22.73 22.73 0.00 6.53
986 1140 2.398554 TTCATGGCGCCGCTTCTTC 61.399 57.895 23.90 0.00 0.00 2.87
1096 1254 0.313043 TCTGAGACCGGTTCGTTGAC 59.687 55.000 9.42 0.00 0.00 3.18
1099 1257 0.531200 GGATCTGAGACCGGTTCGTT 59.469 55.000 9.42 0.00 0.00 3.85
1107 1265 2.065906 GAGACGGCGGATCTGAGACC 62.066 65.000 13.24 0.00 0.00 3.85
1135 1294 2.565645 CGAGATCGGGGTAGGCAGG 61.566 68.421 0.00 0.00 35.37 4.85
1139 1298 1.902432 GGGTCGAGATCGGGGTAGG 60.902 68.421 1.91 0.00 40.29 3.18
1140 1299 1.902432 GGGGTCGAGATCGGGGTAG 60.902 68.421 1.91 0.00 40.29 3.18
1141 1300 2.196776 GGGGTCGAGATCGGGGTA 59.803 66.667 1.91 0.00 40.29 3.69
1142 1301 4.855072 GGGGGTCGAGATCGGGGT 62.855 72.222 1.91 0.00 40.29 4.95
1217 1392 2.902423 AATAGGCAATGGCGGGCGAA 62.902 55.000 0.00 0.00 42.47 4.70
1218 1393 2.902423 AAATAGGCAATGGCGGGCGA 62.902 55.000 0.00 0.00 42.47 5.54
1219 1394 2.015227 AAAATAGGCAATGGCGGGCG 62.015 55.000 0.00 0.00 42.47 6.13
1220 1395 0.530431 CAAAATAGGCAATGGCGGGC 60.530 55.000 0.00 0.00 42.47 6.13
1221 1396 0.530431 GCAAAATAGGCAATGGCGGG 60.530 55.000 0.00 0.00 42.47 6.13
1233 1408 2.021723 GCCACGGGATCCAGCAAAATA 61.022 52.381 15.23 0.00 0.00 1.40
1234 1409 1.322538 GCCACGGGATCCAGCAAAAT 61.323 55.000 15.23 0.00 0.00 1.82
1250 1425 1.068083 GAATCCGCAGAGATCGCCA 59.932 57.895 0.00 0.00 0.00 5.69
1289 1492 2.231964 GCATCATTTTCAGAACCCAGCA 59.768 45.455 0.00 0.00 0.00 4.41
1290 1493 2.733227 CGCATCATTTTCAGAACCCAGC 60.733 50.000 0.00 0.00 0.00 4.85
1291 1494 2.489329 ACGCATCATTTTCAGAACCCAG 59.511 45.455 0.00 0.00 0.00 4.45
1331 1534 3.759086 TGAGGCTCAGAACTACTGTACAG 59.241 47.826 21.44 21.44 45.86 2.74
1337 1540 6.552445 ACATATTTGAGGCTCAGAACTACT 57.448 37.500 17.91 0.21 0.00 2.57
1352 1555 5.920903 AGATGATTTGCCCCAACATATTTG 58.079 37.500 0.00 0.00 0.00 2.32
1355 1558 6.438425 GGATTAGATGATTTGCCCCAACATAT 59.562 38.462 0.00 0.00 0.00 1.78
1356 1559 5.774690 GGATTAGATGATTTGCCCCAACATA 59.225 40.000 0.00 0.00 0.00 2.29
1357 1560 4.590222 GGATTAGATGATTTGCCCCAACAT 59.410 41.667 0.00 0.00 0.00 2.71
1358 1561 3.960102 GGATTAGATGATTTGCCCCAACA 59.040 43.478 0.00 0.00 0.00 3.33
1359 1562 3.321968 GGGATTAGATGATTTGCCCCAAC 59.678 47.826 0.00 0.00 32.98 3.77
1360 1563 3.575805 GGGATTAGATGATTTGCCCCAA 58.424 45.455 0.00 0.00 32.98 4.12
1361 1564 3.243359 GGGATTAGATGATTTGCCCCA 57.757 47.619 0.00 0.00 32.98 4.96
1362 1565 2.529632 GGGGATTAGATGATTTGCCCC 58.470 52.381 0.00 0.00 46.15 5.80
1363 1566 2.529632 GGGGGATTAGATGATTTGCCC 58.470 52.381 0.00 0.00 38.91 5.36
1380 1583 2.132300 CAAACAAGTTGGGTGGGGG 58.868 57.895 7.96 0.00 33.18 5.40
1426 1629 1.750206 TCTTTCAGCAGCAGCAACAAA 59.250 42.857 3.17 0.00 45.49 2.83
1443 1649 1.889530 GACCCTGCGCTACTGGTCTT 61.890 60.000 22.31 4.04 43.16 3.01
1461 1667 3.998913 TTCACCAGCTATGTTCCATGA 57.001 42.857 0.00 0.00 0.00 3.07
1477 1683 7.375053 TGTTTTAGAATGCTAATGGGTTTCAC 58.625 34.615 0.00 0.00 36.54 3.18
1489 1698 5.590259 ACCATTCGCTATGTTTTAGAATGCT 59.410 36.000 10.05 0.00 43.83 3.79
1503 1712 3.305720 AGGTTATCCAGACCATTCGCTA 58.694 45.455 0.00 0.00 39.71 4.26
1506 1715 5.869888 GCTTATAGGTTATCCAGACCATTCG 59.130 44.000 0.00 0.00 39.71 3.34
1567 1779 3.327404 AACAGGCACGGTAGGGGG 61.327 66.667 0.00 0.00 34.27 5.40
1573 1785 4.619227 CCGTCCAACAGGCACGGT 62.619 66.667 13.64 0.00 46.58 4.83
1581 1793 5.838531 ACTTTGTAAAATTCCGTCCAACA 57.161 34.783 0.00 0.00 0.00 3.33
1612 1827 6.203530 CACATCATACAGCAACAATAGTAGGG 59.796 42.308 0.00 0.00 0.00 3.53
1625 1840 7.011763 ACAATCATACTGAACACATCATACAGC 59.988 37.037 0.00 0.00 37.44 4.40
1649 1864 0.034756 AGCACGCCATACTGAACACA 59.965 50.000 0.00 0.00 0.00 3.72
1652 1867 0.721718 GTGAGCACGCCATACTGAAC 59.278 55.000 0.00 0.00 0.00 3.18
1663 1881 3.181507 CCAGTGGATAAAATGTGAGCACG 60.182 47.826 1.68 0.00 0.00 5.34
1667 1885 3.063997 GCGTCCAGTGGATAAAATGTGAG 59.936 47.826 16.67 0.00 32.73 3.51
1719 1974 4.679372 GCTTGTCAGTTATCCAGAGACCTC 60.679 50.000 0.00 0.00 0.00 3.85
1723 1978 4.089361 TCAGCTTGTCAGTTATCCAGAGA 58.911 43.478 0.00 0.00 0.00 3.10
1724 1979 4.462508 TCAGCTTGTCAGTTATCCAGAG 57.537 45.455 0.00 0.00 0.00 3.35
1915 2170 1.140852 CCATCCCCTTGCGTATCAGAA 59.859 52.381 0.00 0.00 0.00 3.02
1923 2178 2.908940 GGCATCCATCCCCTTGCG 60.909 66.667 0.00 0.00 35.95 4.85
1997 2254 0.937304 AAGTGCGCAGTTACACAGTG 59.063 50.000 28.37 0.00 39.30 3.66
2002 2259 1.202592 TGGAGAAAGTGCGCAGTTACA 60.203 47.619 29.50 21.54 0.00 2.41
2010 2267 4.222114 GTGAAAATTCTGGAGAAAGTGCG 58.778 43.478 0.00 0.00 37.61 5.34
2037 2294 5.122711 GTGTTATAAGGAAAACTTAGCCGCA 59.877 40.000 0.00 0.00 44.43 5.69
2216 2480 1.826720 ACATAATGCTGGGCAACTTGG 59.173 47.619 0.00 0.00 43.62 3.61
2226 2493 4.577693 AGCCTACAACATGACATAATGCTG 59.422 41.667 0.00 0.00 31.36 4.41
2229 2496 6.317140 ACTGAAGCCTACAACATGACATAATG 59.683 38.462 0.00 0.00 0.00 1.90
2309 2576 3.492337 ACGAGCCCTTTTAAACCATTGA 58.508 40.909 0.00 0.00 0.00 2.57
2310 2577 3.934457 ACGAGCCCTTTTAAACCATTG 57.066 42.857 0.00 0.00 0.00 2.82
2311 2578 5.048294 CAGTAACGAGCCCTTTTAAACCATT 60.048 40.000 0.00 0.00 0.00 3.16
2316 2584 4.706035 TCACAGTAACGAGCCCTTTTAAA 58.294 39.130 0.00 0.00 0.00 1.52
2438 2706 7.059156 AGAAGGAAATGATGATTAACTGAGGG 58.941 38.462 0.00 0.00 0.00 4.30
2542 2810 3.763097 TTGGCATTGCTCTGATTAACG 57.237 42.857 8.82 0.00 0.00 3.18
2566 2834 2.102420 TCATCGAGTCCACAAGTGTGTT 59.898 45.455 10.40 0.00 44.21 3.32
2603 2873 9.603298 GTCGTTTTACATTTTCTAGGTAAAAGG 57.397 33.333 18.18 18.18 43.56 3.11
2750 3020 3.257375 ACGTGCTACACAATAAGTCTCCA 59.743 43.478 0.00 0.00 33.40 3.86
2951 3226 0.101759 CTGCTGCAGTGTTGTGCTTT 59.898 50.000 21.21 0.00 44.32 3.51
3396 3671 0.936297 GCAAACTTCAAGTGGCAGCG 60.936 55.000 9.09 0.00 31.88 5.18
3486 3761 3.388024 AGTACTCTTCTGAGCACCAAACA 59.612 43.478 0.00 0.00 43.85 2.83
3574 3854 3.133691 CACAACACAGTACATCAGCACT 58.866 45.455 0.00 0.00 0.00 4.40
3621 3901 1.468520 CACGGTGGCCATTTACTTCAG 59.531 52.381 9.72 0.00 0.00 3.02
3638 3918 6.377406 GTGAAGTACACTCTCAATAACACG 57.623 41.667 0.00 0.00 45.13 4.49
3717 3998 7.758495 TGGTGTGAAGAAAGAAAAGAAAGTAC 58.242 34.615 0.00 0.00 0.00 2.73
3759 4040 4.889995 TGCACATACACTGTATAGCTCTCT 59.110 41.667 19.00 0.00 35.91 3.10
3767 4048 4.452114 CACACAACTGCACATACACTGTAT 59.548 41.667 0.00 0.00 35.91 2.29
3829 4110 6.337356 GGAGGAAGTATGAAGAGAAAGAGTG 58.663 44.000 0.00 0.00 0.00 3.51
3917 4198 4.154347 CAGTGGAGAGGAGGGCGC 62.154 72.222 0.00 0.00 0.00 6.53
3918 4199 4.154347 GCAGTGGAGAGGAGGGCG 62.154 72.222 0.00 0.00 0.00 6.13
3919 4200 2.686835 AGCAGTGGAGAGGAGGGC 60.687 66.667 0.00 0.00 0.00 5.19
3920 4201 3.028921 GCAGCAGTGGAGAGGAGGG 62.029 68.421 0.00 0.00 0.00 4.30
3921 4202 2.583520 GCAGCAGTGGAGAGGAGG 59.416 66.667 0.00 0.00 0.00 4.30
3922 4203 2.288778 TGGCAGCAGTGGAGAGGAG 61.289 63.158 0.00 0.00 0.00 3.69
3923 4204 2.203832 TGGCAGCAGTGGAGAGGA 60.204 61.111 0.00 0.00 0.00 3.71
3924 4205 2.046507 GTGGCAGCAGTGGAGAGG 60.047 66.667 0.00 0.00 0.00 3.69
3925 4206 2.046507 GGTGGCAGCAGTGGAGAG 60.047 66.667 12.58 0.00 0.00 3.20
3926 4207 4.007644 CGGTGGCAGCAGTGGAGA 62.008 66.667 17.80 0.00 0.00 3.71
3970 4251 1.026718 CCCATGTTGCCTTCGGAGAC 61.027 60.000 0.00 0.00 34.32 3.36
3971 4252 1.299648 CCCATGTTGCCTTCGGAGA 59.700 57.895 0.00 0.00 0.00 3.71
3972 4253 1.750399 CCCCATGTTGCCTTCGGAG 60.750 63.158 0.00 0.00 0.00 4.63
3973 4254 2.196997 CTCCCCATGTTGCCTTCGGA 62.197 60.000 0.00 0.00 0.00 4.55
3974 4255 1.750399 CTCCCCATGTTGCCTTCGG 60.750 63.158 0.00 0.00 0.00 4.30
3975 4256 0.107017 ATCTCCCCATGTTGCCTTCG 60.107 55.000 0.00 0.00 0.00 3.79
3976 4257 1.685148 GATCTCCCCATGTTGCCTTC 58.315 55.000 0.00 0.00 0.00 3.46
3977 4258 0.259938 GGATCTCCCCATGTTGCCTT 59.740 55.000 0.00 0.00 0.00 4.35
3978 4259 1.925888 GGATCTCCCCATGTTGCCT 59.074 57.895 0.00 0.00 0.00 4.75
3979 4260 1.526917 CGGATCTCCCCATGTTGCC 60.527 63.158 0.00 0.00 0.00 4.52
3980 4261 2.189499 GCGGATCTCCCCATGTTGC 61.189 63.158 0.00 0.00 0.00 4.17
3981 4262 1.889105 CGCGGATCTCCCCATGTTG 60.889 63.158 0.00 0.00 0.00 3.33
3982 4263 2.505982 CGCGGATCTCCCCATGTT 59.494 61.111 0.00 0.00 0.00 2.71
3983 4264 3.550431 CCGCGGATCTCCCCATGT 61.550 66.667 24.07 0.00 0.00 3.21
3984 4265 3.550431 ACCGCGGATCTCCCCATG 61.550 66.667 35.90 0.00 0.00 3.66
3985 4266 3.550431 CACCGCGGATCTCCCCAT 61.550 66.667 35.90 1.64 0.00 4.00
4023 4304 3.902063 CGAACGGCGCATCTCACG 61.902 66.667 10.83 4.56 0.00 4.35
4024 4305 2.809601 ACGAACGGCGCATCTCAC 60.810 61.111 10.83 0.00 46.04 3.51
4025 4306 2.809174 CACGAACGGCGCATCTCA 60.809 61.111 10.83 0.00 46.04 3.27
4026 4307 3.554692 CCACGAACGGCGCATCTC 61.555 66.667 10.83 0.05 46.04 2.75
4061 4342 3.818787 CAGGTGAATGCAGCCCGC 61.819 66.667 0.00 0.00 43.41 6.13
4062 4343 3.818787 GCAGGTGAATGCAGCCCG 61.819 66.667 0.00 0.00 45.77 6.13
4068 4349 2.825836 CGGGAGGCAGGTGAATGC 60.826 66.667 0.00 0.00 45.74 3.56
4069 4350 1.746615 CACGGGAGGCAGGTGAATG 60.747 63.158 0.00 0.00 33.58 2.67
4070 4351 2.671070 CACGGGAGGCAGGTGAAT 59.329 61.111 0.00 0.00 33.58 2.57
4071 4352 3.636231 CCACGGGAGGCAGGTGAA 61.636 66.667 0.00 0.00 33.58 3.18
4081 4362 3.556038 ATCCACCACTCCCACGGGA 62.556 63.158 4.36 4.36 42.90 5.14
4082 4363 3.009115 ATCCACCACTCCCACGGG 61.009 66.667 0.00 0.00 0.00 5.28
4083 4364 2.268920 CATCCACCACTCCCACGG 59.731 66.667 0.00 0.00 0.00 4.94
4084 4365 2.436646 GCATCCACCACTCCCACG 60.437 66.667 0.00 0.00 0.00 4.94
4085 4366 1.033746 CATGCATCCACCACTCCCAC 61.034 60.000 0.00 0.00 0.00 4.61
4086 4367 1.303948 CATGCATCCACCACTCCCA 59.696 57.895 0.00 0.00 0.00 4.37
4087 4368 1.454479 CCATGCATCCACCACTCCC 60.454 63.158 0.00 0.00 0.00 4.30
4088 4369 2.123428 GCCATGCATCCACCACTCC 61.123 63.158 0.00 0.00 0.00 3.85
4089 4370 2.123428 GGCCATGCATCCACCACTC 61.123 63.158 0.00 0.00 0.00 3.51
4090 4371 2.043652 GGCCATGCATCCACCACT 60.044 61.111 0.00 0.00 0.00 4.00
4091 4372 3.520862 CGGCCATGCATCCACCAC 61.521 66.667 2.24 0.00 0.00 4.16
4092 4373 4.818863 CCGGCCATGCATCCACCA 62.819 66.667 2.24 0.00 0.00 4.17
4097 4378 4.034258 CATCGCCGGCCATGCATC 62.034 66.667 21.29 0.00 0.00 3.91
4118 4399 4.194720 ATCTGGCTCGTCCGCGTC 62.195 66.667 4.92 0.00 39.49 5.19
4119 4400 4.194720 GATCTGGCTCGTCCGCGT 62.195 66.667 4.92 0.00 39.49 6.01
4120 4401 4.933064 GGATCTGGCTCGTCCGCG 62.933 72.222 0.00 0.00 37.80 6.46
4121 4402 4.933064 CGGATCTGGCTCGTCCGC 62.933 72.222 10.93 0.00 46.90 5.54
4123 4404 2.105128 CACGGATCTGGCTCGTCC 59.895 66.667 6.47 0.00 34.73 4.79
4124 4405 2.583593 GCACGGATCTGGCTCGTC 60.584 66.667 6.47 0.00 34.73 4.20
4125 4406 4.498520 CGCACGGATCTGGCTCGT 62.499 66.667 6.47 0.00 37.64 4.18
4126 4407 4.498520 ACGCACGGATCTGGCTCG 62.499 66.667 6.47 8.44 0.00 5.03
4127 4408 2.583593 GACGCACGGATCTGGCTC 60.584 66.667 6.47 3.39 0.00 4.70
4128 4409 4.148825 GGACGCACGGATCTGGCT 62.149 66.667 6.47 0.00 0.00 4.75
4129 4410 3.665675 AAGGACGCACGGATCTGGC 62.666 63.158 6.47 5.76 0.00 4.85
4130 4411 1.811266 CAAGGACGCACGGATCTGG 60.811 63.158 6.47 0.00 0.00 3.86
4131 4412 1.811266 CCAAGGACGCACGGATCTG 60.811 63.158 0.00 0.00 0.00 2.90
4132 4413 2.579201 CCAAGGACGCACGGATCT 59.421 61.111 0.00 0.00 0.00 2.75
4133 4414 3.195698 GCCAAGGACGCACGGATC 61.196 66.667 0.00 0.00 0.00 3.36
4134 4415 3.706373 AGCCAAGGACGCACGGAT 61.706 61.111 0.00 0.00 0.00 4.18
4135 4416 4.680237 CAGCCAAGGACGCACGGA 62.680 66.667 0.00 0.00 0.00 4.69
4138 4419 3.044059 GATGCAGCCAAGGACGCAC 62.044 63.158 5.20 0.00 37.17 5.34
4139 4420 2.747460 GATGCAGCCAAGGACGCA 60.747 61.111 5.51 5.51 39.01 5.24
4140 4421 3.512516 GGATGCAGCCAAGGACGC 61.513 66.667 18.08 0.00 0.00 5.19
4141 4422 2.825836 GGGATGCAGCCAAGGACG 60.826 66.667 24.75 0.00 0.00 4.79
4142 4423 2.440980 GGGGATGCAGCCAAGGAC 60.441 66.667 24.75 4.25 0.00 3.85
4143 4424 4.113815 CGGGGATGCAGCCAAGGA 62.114 66.667 24.75 0.00 0.00 3.36
4153 4434 3.550431 AGATCCACCGCGGGGATG 61.550 66.667 37.27 25.08 45.05 3.51
4160 4441 4.864334 CCAGGCCAGATCCACCGC 62.864 72.222 5.01 0.00 0.00 5.68
4161 4442 4.181010 CCCAGGCCAGATCCACCG 62.181 72.222 5.01 0.00 0.00 4.94
4162 4443 4.512914 GCCCAGGCCAGATCCACC 62.513 72.222 5.01 0.00 34.56 4.61
4163 4444 4.864334 CGCCCAGGCCAGATCCAC 62.864 72.222 5.01 0.00 37.98 4.02
4211 4492 3.912745 GATCCACCAACCCCGCGTT 62.913 63.158 4.92 0.00 33.90 4.84
4212 4493 4.404098 GATCCACCAACCCCGCGT 62.404 66.667 4.92 0.00 0.00 6.01
4214 4495 4.404098 ACGATCCACCAACCCCGC 62.404 66.667 0.00 0.00 0.00 6.13
4215 4496 2.435938 CACGATCCACCAACCCCG 60.436 66.667 0.00 0.00 0.00 5.73
4216 4497 2.045340 CCACGATCCACCAACCCC 60.045 66.667 0.00 0.00 0.00 4.95
4217 4498 2.045340 CCCACGATCCACCAACCC 60.045 66.667 0.00 0.00 0.00 4.11
4218 4499 1.376812 GACCCACGATCCACCAACC 60.377 63.158 0.00 0.00 0.00 3.77
4219 4500 0.036306 AAGACCCACGATCCACCAAC 59.964 55.000 0.00 0.00 0.00 3.77
4220 4501 0.036164 CAAGACCCACGATCCACCAA 59.964 55.000 0.00 0.00 0.00 3.67
4221 4502 1.676968 CAAGACCCACGATCCACCA 59.323 57.895 0.00 0.00 0.00 4.17
4222 4503 1.745489 GCAAGACCCACGATCCACC 60.745 63.158 0.00 0.00 0.00 4.61
4223 4504 1.021390 CAGCAAGACCCACGATCCAC 61.021 60.000 0.00 0.00 0.00 4.02
4224 4505 1.296392 CAGCAAGACCCACGATCCA 59.704 57.895 0.00 0.00 0.00 3.41
4225 4506 2.109126 GCAGCAAGACCCACGATCC 61.109 63.158 0.00 0.00 0.00 3.36
4226 4507 1.375908 TGCAGCAAGACCCACGATC 60.376 57.895 0.00 0.00 0.00 3.69
4227 4508 1.672356 GTGCAGCAAGACCCACGAT 60.672 57.895 0.00 0.00 0.00 3.73
4228 4509 2.280797 GTGCAGCAAGACCCACGA 60.281 61.111 0.00 0.00 0.00 4.35
4229 4510 3.716006 CGTGCAGCAAGACCCACG 61.716 66.667 1.43 0.00 43.83 4.94
4262 4543 4.680237 TTGGTCGGCGAGCACCAG 62.680 66.667 37.63 0.00 43.68 4.00
4263 4544 4.680237 CTTGGTCGGCGAGCACCA 62.680 66.667 37.63 26.03 39.84 4.17
4264 4545 4.681978 ACTTGGTCGGCGAGCACC 62.682 66.667 37.63 23.70 39.84 5.01
4265 4546 3.414700 CACTTGGTCGGCGAGCAC 61.415 66.667 37.63 18.94 39.84 4.40
4266 4547 4.680237 CCACTTGGTCGGCGAGCA 62.680 66.667 34.77 34.77 38.32 4.26
4276 4557 2.266055 GAGCTCCGACCCACTTGG 59.734 66.667 0.87 0.00 41.37 3.61
4277 4558 2.266055 GGAGCTCCGACCCACTTG 59.734 66.667 19.06 0.00 0.00 3.16
4278 4559 2.203788 TGGAGCTCCGACCCACTT 60.204 61.111 27.43 0.00 39.43 3.16
4279 4560 2.681778 CTGGAGCTCCGACCCACT 60.682 66.667 27.43 0.00 39.43 4.00
4280 4561 3.775654 CCTGGAGCTCCGACCCAC 61.776 72.222 27.43 2.45 39.43 4.61
4298 4579 2.099062 GATCAAAGTGGCGCTGCG 59.901 61.111 19.17 19.17 0.00 5.18
4299 4580 1.136147 CAGATCAAAGTGGCGCTGC 59.864 57.895 7.64 0.00 0.00 5.25
4300 4581 1.136147 GCAGATCAAAGTGGCGCTG 59.864 57.895 7.64 0.00 0.00 5.18
4301 4582 2.042831 GGCAGATCAAAGTGGCGCT 61.043 57.895 7.64 0.00 0.00 5.92
4302 4583 2.486966 GGCAGATCAAAGTGGCGC 59.513 61.111 0.00 0.00 0.00 6.53
4304 4585 2.486966 GCGGCAGATCAAAGTGGC 59.513 61.111 0.00 0.00 35.93 5.01
4305 4586 1.372087 GAGGCGGCAGATCAAAGTGG 61.372 60.000 13.08 0.00 0.00 4.00
4306 4587 0.392193 AGAGGCGGCAGATCAAAGTG 60.392 55.000 13.08 0.00 0.00 3.16
4307 4588 0.392193 CAGAGGCGGCAGATCAAAGT 60.392 55.000 13.08 0.00 0.00 2.66
4308 4589 1.094073 CCAGAGGCGGCAGATCAAAG 61.094 60.000 13.08 0.00 0.00 2.77
4309 4590 1.078214 CCAGAGGCGGCAGATCAAA 60.078 57.895 13.08 0.00 0.00 2.69
4310 4591 2.586245 CCAGAGGCGGCAGATCAA 59.414 61.111 13.08 0.00 0.00 2.57
4311 4592 3.473647 CCCAGAGGCGGCAGATCA 61.474 66.667 13.08 0.00 0.00 2.92
4321 4602 2.124983 CACCATCACGCCCAGAGG 60.125 66.667 0.00 0.00 0.00 3.69
4322 4603 2.124983 CCACCATCACGCCCAGAG 60.125 66.667 0.00 0.00 0.00 3.35
4323 4604 4.408821 GCCACCATCACGCCCAGA 62.409 66.667 0.00 0.00 0.00 3.86
4324 4605 4.415150 AGCCACCATCACGCCCAG 62.415 66.667 0.00 0.00 0.00 4.45
4325 4606 4.720902 CAGCCACCATCACGCCCA 62.721 66.667 0.00 0.00 0.00 5.36
4328 4609 3.807538 CAGCAGCCACCATCACGC 61.808 66.667 0.00 0.00 0.00 5.34
4329 4610 3.807538 GCAGCAGCCACCATCACG 61.808 66.667 0.00 0.00 33.58 4.35
4330 4611 2.360852 AGCAGCAGCCACCATCAC 60.361 61.111 0.00 0.00 43.56 3.06
4331 4612 2.360726 CAGCAGCAGCCACCATCA 60.361 61.111 0.00 0.00 43.56 3.07
4332 4613 3.138798 CCAGCAGCAGCCACCATC 61.139 66.667 0.00 0.00 43.56 3.51
4333 4614 3.214190 TTCCAGCAGCAGCCACCAT 62.214 57.895 0.00 0.00 43.56 3.55
4334 4615 3.855503 CTTCCAGCAGCAGCCACCA 62.856 63.158 0.00 0.00 43.56 4.17
4335 4616 3.060615 CTTCCAGCAGCAGCCACC 61.061 66.667 0.00 0.00 43.56 4.61
4336 4617 2.033141 TCTTCCAGCAGCAGCCAC 59.967 61.111 0.00 0.00 43.56 5.01
4337 4618 2.350134 CTCTTCCAGCAGCAGCCA 59.650 61.111 0.00 0.00 43.56 4.75
4338 4619 2.438075 CCTCTTCCAGCAGCAGCC 60.438 66.667 0.00 0.00 43.56 4.85
4339 4620 2.438075 CCCTCTTCCAGCAGCAGC 60.438 66.667 0.00 0.00 42.56 5.25
4340 4621 2.254737 CTCCCCTCTTCCAGCAGCAG 62.255 65.000 0.00 0.00 0.00 4.24
4341 4622 2.203983 TCCCCTCTTCCAGCAGCA 60.204 61.111 0.00 0.00 0.00 4.41
4342 4623 1.970352 CTCTCCCCTCTTCCAGCAGC 61.970 65.000 0.00 0.00 0.00 5.25
4343 4624 0.617249 ACTCTCCCCTCTTCCAGCAG 60.617 60.000 0.00 0.00 0.00 4.24
4344 4625 0.906756 CACTCTCCCCTCTTCCAGCA 60.907 60.000 0.00 0.00 0.00 4.41
4345 4626 0.907230 ACACTCTCCCCTCTTCCAGC 60.907 60.000 0.00 0.00 0.00 4.85
4346 4627 1.277557 CAACACTCTCCCCTCTTCCAG 59.722 57.143 0.00 0.00 0.00 3.86
4347 4628 1.352083 CAACACTCTCCCCTCTTCCA 58.648 55.000 0.00 0.00 0.00 3.53
4348 4629 0.615850 CCAACACTCTCCCCTCTTCC 59.384 60.000 0.00 0.00 0.00 3.46
4349 4630 0.615850 CCCAACACTCTCCCCTCTTC 59.384 60.000 0.00 0.00 0.00 2.87
4350 4631 0.842467 CCCCAACACTCTCCCCTCTT 60.842 60.000 0.00 0.00 0.00 2.85
4351 4632 1.229658 CCCCAACACTCTCCCCTCT 60.230 63.158 0.00 0.00 0.00 3.69
4352 4633 0.840722 TTCCCCAACACTCTCCCCTC 60.841 60.000 0.00 0.00 0.00 4.30
4353 4634 1.134438 GTTCCCCAACACTCTCCCCT 61.134 60.000 0.00 0.00 32.14 4.79
4354 4635 1.379146 GTTCCCCAACACTCTCCCC 59.621 63.158 0.00 0.00 32.14 4.81
4355 4636 1.003718 CGTTCCCCAACACTCTCCC 60.004 63.158 0.00 0.00 32.14 4.30
4356 4637 1.671379 GCGTTCCCCAACACTCTCC 60.671 63.158 0.00 0.00 32.14 3.71
4357 4638 0.951040 CTGCGTTCCCCAACACTCTC 60.951 60.000 0.00 0.00 32.14 3.20
4358 4639 1.071471 CTGCGTTCCCCAACACTCT 59.929 57.895 0.00 0.00 32.14 3.24
4359 4640 0.034337 TACTGCGTTCCCCAACACTC 59.966 55.000 0.00 0.00 32.14 3.51
4360 4641 0.690762 ATACTGCGTTCCCCAACACT 59.309 50.000 0.00 0.00 32.14 3.55
4361 4642 2.389962 TATACTGCGTTCCCCAACAC 57.610 50.000 0.00 0.00 32.14 3.32
4362 4643 2.502130 TGATATACTGCGTTCCCCAACA 59.498 45.455 0.00 0.00 32.14 3.33
4363 4644 3.188159 TGATATACTGCGTTCCCCAAC 57.812 47.619 0.00 0.00 0.00 3.77
4364 4645 3.916359 TTGATATACTGCGTTCCCCAA 57.084 42.857 0.00 0.00 0.00 4.12
4365 4646 3.916359 TTTGATATACTGCGTTCCCCA 57.084 42.857 0.00 0.00 0.00 4.96
4366 4647 5.767816 AATTTTGATATACTGCGTTCCCC 57.232 39.130 0.00 0.00 0.00 4.81
4367 4648 6.695713 GGAAAATTTTGATATACTGCGTTCCC 59.304 38.462 8.47 0.00 0.00 3.97
4368 4649 7.480810 AGGAAAATTTTGATATACTGCGTTCC 58.519 34.615 8.47 0.00 0.00 3.62
4369 4650 9.434559 GTAGGAAAATTTTGATATACTGCGTTC 57.565 33.333 8.47 0.00 0.00 3.95
4370 4651 8.120465 CGTAGGAAAATTTTGATATACTGCGTT 58.880 33.333 8.47 0.00 0.00 4.84
4371 4652 7.493320 TCGTAGGAAAATTTTGATATACTGCGT 59.507 33.333 8.47 0.00 34.16 5.24
4372 4653 7.847487 TCGTAGGAAAATTTTGATATACTGCG 58.153 34.615 8.47 5.71 33.86 5.18
4373 4654 9.813080 GATCGTAGGAAAATTTTGATATACTGC 57.187 33.333 8.47 0.00 0.00 4.40
4381 4662 9.443323 TCTTGTATGATCGTAGGAAAATTTTGA 57.557 29.630 8.47 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.