Multiple sequence alignment - TraesCS4A01G282300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G282300 chr4A 100.000 5930 0 0 1 5930 589841588 589847517 0.000000e+00 10951.0
1 TraesCS4A01G282300 chr4A 96.237 2365 74 5 1513 3865 589781457 589779096 0.000000e+00 3860.0
2 TraesCS4A01G282300 chr4A 97.391 1495 35 1 3863 5357 589778859 589777369 0.000000e+00 2542.0
3 TraesCS4A01G282300 chr4A 90.039 1295 123 2 985 2279 589787435 589788723 0.000000e+00 1672.0
4 TraesCS4A01G282300 chr4A 86.592 977 118 11 3569 4538 589790090 589791060 0.000000e+00 1066.0
5 TraesCS4A01G282300 chr4A 94.066 573 29 3 5358 5928 617903331 617902762 0.000000e+00 865.0
6 TraesCS4A01G282300 chr4A 87.312 733 86 6 2813 3543 589789376 589790103 0.000000e+00 832.0
7 TraesCS4A01G282300 chr4A 82.500 600 74 13 4595 5192 589791077 589791647 1.150000e-136 497.0
8 TraesCS4A01G282300 chr4A 90.753 292 17 4 5066 5357 589795737 589795456 1.210000e-101 381.0
9 TraesCS4A01G282300 chr4D 88.874 2265 219 23 2813 5070 12655003 12657241 0.000000e+00 2756.0
10 TraesCS4A01G282300 chr4D 92.686 1832 113 16 2718 4538 12660690 12658869 0.000000e+00 2621.0
11 TraesCS4A01G282300 chr4D 93.519 1435 75 13 880 2307 12662246 12660823 0.000000e+00 2119.0
12 TraesCS4A01G282300 chr4D 89.397 1311 128 3 969 2279 12653056 12654355 0.000000e+00 1640.0
13 TraesCS4A01G282300 chr4D 83.399 765 99 15 4595 5357 12658852 12658114 0.000000e+00 684.0
14 TraesCS4A01G282300 chr4D 94.178 292 10 2 5066 5357 12657366 12657650 7.060000e-119 438.0
15 TraesCS4A01G282300 chr4D 83.191 351 51 7 533 879 7033653 7033999 1.240000e-81 315.0
16 TraesCS4A01G282300 chr4D 90.148 203 14 1 326 528 12662766 12662570 5.900000e-65 259.0
17 TraesCS4A01G282300 chr4B 89.134 1721 160 14 2828 4538 23356059 23357762 0.000000e+00 2117.0
18 TraesCS4A01G282300 chr4B 91.397 1360 110 4 972 2331 23354371 23355723 0.000000e+00 1857.0
19 TraesCS4A01G282300 chr4B 84.795 730 93 10 3102 3830 23320384 23319672 0.000000e+00 717.0
20 TraesCS4A01G282300 chr4B 89.661 561 55 2 3859 4418 23318126 23317568 0.000000e+00 712.0
21 TraesCS4A01G282300 chr4B 82.661 744 103 13 4595 5338 23357779 23358496 2.330000e-178 636.0
22 TraesCS4A01G282300 chr4B 86.473 584 47 17 5362 5930 22956952 22957518 3.930000e-171 612.0
23 TraesCS4A01G282300 chr4B 100.000 322 0 0 1 322 351300806 351300485 3.960000e-166 595.0
24 TraesCS4A01G282300 chr4B 82.482 274 30 9 2617 2881 23355916 23356180 2.150000e-54 224.0
25 TraesCS4A01G282300 chr4B 90.000 90 9 0 2337 2426 427278670 427278581 3.750000e-22 117.0
26 TraesCS4A01G282300 chr2D 85.133 1278 165 15 1011 2268 19045675 19046947 0.000000e+00 1284.0
27 TraesCS4A01G282300 chr2D 82.826 1281 193 9 1015 2268 18763315 18762035 0.000000e+00 1122.0
28 TraesCS4A01G282300 chr2D 100.000 324 0 0 1 324 617105317 617104994 3.060000e-167 599.0
29 TraesCS4A01G282300 chr2D 78.226 868 132 37 3605 4440 18756595 18755753 2.470000e-138 503.0
30 TraesCS4A01G282300 chr2D 78.395 324 52 9 3162 3483 18757529 18757222 1.690000e-45 195.0
31 TraesCS4A01G282300 chr2A 84.750 1259 168 10 1034 2268 19949071 19947813 0.000000e+00 1240.0
32 TraesCS4A01G282300 chr2A 77.549 824 135 36 4120 4930 19927453 19926667 9.060000e-123 451.0
33 TraesCS4A01G282300 chr2A 88.889 90 10 0 2337 2426 740160588 740160499 1.750000e-20 111.0
34 TraesCS4A01G282300 chr1D 84.441 1279 176 12 1012 2268 329669804 329668527 0.000000e+00 1238.0
35 TraesCS4A01G282300 chr1D 80.649 894 120 37 3605 4473 329667373 329666508 1.390000e-180 643.0
36 TraesCS4A01G282300 chr1D 81.655 447 66 10 4500 4943 329666306 329665873 2.030000e-94 357.0
37 TraesCS4A01G282300 chr1A 83.788 1283 179 17 1012 2268 426876637 426875358 0.000000e+00 1190.0
38 TraesCS4A01G282300 chr1A 79.910 886 117 34 3600 4463 426874460 426873614 1.420000e-165 593.0
39 TraesCS4A01G282300 chr1A 78.595 299 55 8 586 880 514204062 514204355 7.850000e-44 189.0
40 TraesCS4A01G282300 chr1A 74.046 524 86 35 2988 3478 426875132 426874626 1.020000e-37 169.0
41 TraesCS4A01G282300 chr1B 83.372 1281 189 12 1012 2268 444671137 444669857 0.000000e+00 1164.0
42 TraesCS4A01G282300 chr1B 81.156 865 110 32 3600 4432 444668924 444668081 0.000000e+00 645.0
43 TraesCS4A01G282300 chr1B 80.580 448 70 12 4501 4943 444667778 444667343 4.430000e-86 329.0
44 TraesCS4A01G282300 chr5A 94.435 575 27 3 5358 5930 631627289 631626718 0.000000e+00 880.0
45 TraesCS4A01G282300 chr5A 92.496 573 33 7 5358 5930 99408755 99409317 0.000000e+00 811.0
46 TraesCS4A01G282300 chr5A 83.143 350 52 7 533 879 1724697 1725042 4.460000e-81 313.0
47 TraesCS4A01G282300 chr5A 88.764 89 10 0 2338 2426 399461912 399461824 6.280000e-20 110.0
48 TraesCS4A01G282300 chr7A 93.380 574 33 3 5358 5930 117681996 117681427 0.000000e+00 845.0
49 TraesCS4A01G282300 chr7A 92.361 576 37 3 5357 5930 680389868 680389298 0.000000e+00 813.0
50 TraesCS4A01G282300 chr7A 92.692 260 14 3 5357 5615 117687268 117687013 2.610000e-98 370.0
51 TraesCS4A01G282300 chr7A 90.361 83 8 0 2337 2419 692131302 692131384 6.280000e-20 110.0
52 TraesCS4A01G282300 chr5B 93.217 575 34 3 5358 5930 103241339 103240768 0.000000e+00 841.0
53 TraesCS4A01G282300 chr5B 91.130 575 45 4 5358 5930 547289294 547288724 0.000000e+00 774.0
54 TraesCS4A01G282300 chr5B 92.453 265 15 3 5357 5619 103236401 103236140 2.020000e-99 374.0
55 TraesCS4A01G282300 chrUn 78.692 1361 203 51 3601 4930 314646105 314647409 0.000000e+00 826.0
56 TraesCS4A01G282300 chrUn 85.024 414 54 4 1011 1420 322648377 322647968 1.190000e-111 414.0
57 TraesCS4A01G282300 chr3D 86.325 585 54 13 5358 5929 153162790 153162219 1.090000e-171 614.0
58 TraesCS4A01G282300 chr3D 82.883 333 47 6 550 879 602050392 602050717 2.090000e-74 291.0
59 TraesCS4A01G282300 chr3D 78.386 347 61 7 532 876 554951764 554952098 4.660000e-51 213.0
60 TraesCS4A01G282300 chr3B 99.694 327 0 1 1 327 59028865 59028540 1.100000e-166 597.0
61 TraesCS4A01G282300 chr3B 92.500 80 6 0 2347 2426 780516316 780516237 1.350000e-21 115.0
62 TraesCS4A01G282300 chr2B 99.689 322 1 0 1 322 172800025 172799704 1.840000e-164 590.0
63 TraesCS4A01G282300 chr2B 86.246 349 44 4 535 881 103193628 103193974 5.610000e-100 375.0
64 TraesCS4A01G282300 chr2B 77.178 482 94 12 4414 4888 30576520 30576992 3.520000e-67 267.0
65 TraesCS4A01G282300 chr2B 87.778 90 11 0 2337 2426 43427134 43427223 8.130000e-19 106.0
66 TraesCS4A01G282300 chr6A 90.780 282 25 1 43 324 183228819 183228539 5.610000e-100 375.0
67 TraesCS4A01G282300 chr6A 78.808 302 53 9 592 889 592444359 592444653 6.060000e-45 193.0
68 TraesCS4A01G282300 chr6A 95.000 40 2 0 18 57 183228888 183228849 4.960000e-06 63.9
69 TraesCS4A01G282300 chr6D 83.239 352 43 9 531 878 78348116 78348455 5.770000e-80 309.0
70 TraesCS4A01G282300 chr5D 81.605 299 52 3 581 877 511825512 511825809 1.650000e-60 244.0
71 TraesCS4A01G282300 chr3A 89.888 89 9 0 2338 2426 11688675 11688763 1.350000e-21 115.0
72 TraesCS4A01G282300 chr3A 89.888 89 9 0 2338 2426 11714010 11714098 1.350000e-21 115.0
73 TraesCS4A01G282300 chr6B 95.745 47 0 1 606 652 509518431 509518387 2.290000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G282300 chr4A 589841588 589847517 5929 False 10951.000000 10951 100.000000 1 5930 1 chr4A.!!$F1 5929
1 TraesCS4A01G282300 chr4A 589777369 589781457 4088 True 3201.000000 3860 96.814000 1513 5357 2 chr4A.!!$R3 3844
2 TraesCS4A01G282300 chr4A 589787435 589791647 4212 False 1016.750000 1672 86.610750 985 5192 4 chr4A.!!$F2 4207
3 TraesCS4A01G282300 chr4A 617902762 617903331 569 True 865.000000 865 94.066000 5358 5928 1 chr4A.!!$R2 570
4 TraesCS4A01G282300 chr4D 12653056 12657650 4594 False 1611.333333 2756 90.816333 969 5357 3 chr4D.!!$F2 4388
5 TraesCS4A01G282300 chr4D 12658114 12662766 4652 True 1420.750000 2621 89.938000 326 5357 4 chr4D.!!$R1 5031
6 TraesCS4A01G282300 chr4B 23354371 23358496 4125 False 1208.500000 2117 86.418500 972 5338 4 chr4B.!!$F2 4366
7 TraesCS4A01G282300 chr4B 23317568 23320384 2816 True 714.500000 717 87.228000 3102 4418 2 chr4B.!!$R3 1316
8 TraesCS4A01G282300 chr4B 22956952 22957518 566 False 612.000000 612 86.473000 5362 5930 1 chr4B.!!$F1 568
9 TraesCS4A01G282300 chr2D 19045675 19046947 1272 False 1284.000000 1284 85.133000 1011 2268 1 chr2D.!!$F1 1257
10 TraesCS4A01G282300 chr2D 18762035 18763315 1280 True 1122.000000 1122 82.826000 1015 2268 1 chr2D.!!$R1 1253
11 TraesCS4A01G282300 chr2D 18755753 18757529 1776 True 349.000000 503 78.310500 3162 4440 2 chr2D.!!$R3 1278
12 TraesCS4A01G282300 chr2A 19947813 19949071 1258 True 1240.000000 1240 84.750000 1034 2268 1 chr2A.!!$R2 1234
13 TraesCS4A01G282300 chr2A 19926667 19927453 786 True 451.000000 451 77.549000 4120 4930 1 chr2A.!!$R1 810
14 TraesCS4A01G282300 chr1D 329665873 329669804 3931 True 746.000000 1238 82.248333 1012 4943 3 chr1D.!!$R1 3931
15 TraesCS4A01G282300 chr1A 426873614 426876637 3023 True 650.666667 1190 79.248000 1012 4463 3 chr1A.!!$R1 3451
16 TraesCS4A01G282300 chr1B 444667343 444671137 3794 True 712.666667 1164 81.702667 1012 4943 3 chr1B.!!$R1 3931
17 TraesCS4A01G282300 chr5A 631626718 631627289 571 True 880.000000 880 94.435000 5358 5930 1 chr5A.!!$R2 572
18 TraesCS4A01G282300 chr5A 99408755 99409317 562 False 811.000000 811 92.496000 5358 5930 1 chr5A.!!$F2 572
19 TraesCS4A01G282300 chr7A 117681427 117681996 569 True 845.000000 845 93.380000 5358 5930 1 chr7A.!!$R1 572
20 TraesCS4A01G282300 chr7A 680389298 680389868 570 True 813.000000 813 92.361000 5357 5930 1 chr7A.!!$R3 573
21 TraesCS4A01G282300 chr5B 103240768 103241339 571 True 841.000000 841 93.217000 5358 5930 1 chr5B.!!$R2 572
22 TraesCS4A01G282300 chr5B 547288724 547289294 570 True 774.000000 774 91.130000 5358 5930 1 chr5B.!!$R3 572
23 TraesCS4A01G282300 chrUn 314646105 314647409 1304 False 826.000000 826 78.692000 3601 4930 1 chrUn.!!$F1 1329
24 TraesCS4A01G282300 chr3D 153162219 153162790 571 True 614.000000 614 86.325000 5358 5929 1 chr3D.!!$R1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 599 0.030101 ACCATCGTTTTTGTGTGCCG 59.970 50.000 0.00 0.00 0.00 5.69 F
768 872 0.033366 GGATTGGGCGCAGTGTTTTT 59.967 50.000 10.83 0.00 0.00 1.94 F
865 969 0.110823 GAGACGAAACGCGCATGTTT 60.111 50.000 5.73 12.37 46.04 2.83 F
1049 1154 0.165511 CTGCTCGCTTTTCTGTCTGC 59.834 55.000 0.00 0.00 0.00 4.26 F
1329 1446 0.173935 TCGACGCCACCAACGATAAT 59.826 50.000 0.00 0.00 0.00 1.28 F
1358 1475 1.080705 GGTCGTCCAACTCCTCGTG 60.081 63.158 0.00 0.00 0.00 4.35 F
1361 1478 2.047179 GTCCAACTCCTCGTGGGC 60.047 66.667 3.23 0.00 36.57 5.36 F
4054 7276 0.679002 ACGTTCTCCTCGATCGGGAA 60.679 55.000 18.72 12.30 38.75 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2550 2712 2.560542 CCATCCTTCTCCTACCTCATCG 59.439 54.545 0.00 0.0 0.00 3.84 R
2612 2776 6.660887 AAGTTGTGCCATTTTTGTAACTTG 57.339 33.333 0.00 0.0 36.06 3.16 R
2613 2777 8.956533 AATAAGTTGTGCCATTTTTGTAACTT 57.043 26.923 0.00 0.0 39.41 2.66 R
3159 4038 4.178540 GCAATGCAAATGCTGTTATCACT 58.821 39.130 17.78 0.0 42.66 3.41 R
3376 4302 1.671979 TTCGAGATGGTACGTCGGAT 58.328 50.000 0.00 0.0 34.43 4.18 R
4054 7276 1.774254 TCCGATATCTTGGCCACCATT 59.226 47.619 3.88 0.0 31.53 3.16 R
4112 7334 4.583871 ACAATCCTTTCTGTGACCTGATC 58.416 43.478 0.00 0.0 0.00 2.92 R
5827 9513 0.251341 ACAAGAAGGGGCGCTGATTT 60.251 50.000 7.64 0.0 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.045926 GCTGGCTGACCGGTGATT 60.046 61.111 14.63 0.00 45.10 2.57
29 30 1.675641 GCTGGCTGACCGGTGATTT 60.676 57.895 14.63 0.00 45.10 2.17
30 31 1.926511 GCTGGCTGACCGGTGATTTG 61.927 60.000 14.63 0.00 45.10 2.32
31 32 0.606401 CTGGCTGACCGGTGATTTGT 60.606 55.000 14.63 0.00 39.70 2.83
32 33 0.179004 TGGCTGACCGGTGATTTGTT 60.179 50.000 14.63 0.00 39.70 2.83
33 34 1.072489 TGGCTGACCGGTGATTTGTTA 59.928 47.619 14.63 0.00 39.70 2.41
34 35 1.467342 GGCTGACCGGTGATTTGTTAC 59.533 52.381 14.63 0.00 0.00 2.50
35 36 2.147958 GCTGACCGGTGATTTGTTACA 58.852 47.619 14.63 0.00 0.00 2.41
36 37 2.159627 GCTGACCGGTGATTTGTTACAG 59.840 50.000 14.63 11.08 0.00 2.74
37 38 2.147958 TGACCGGTGATTTGTTACAGC 58.852 47.619 14.63 0.00 0.00 4.40
38 39 1.467342 GACCGGTGATTTGTTACAGCC 59.533 52.381 14.63 0.00 0.00 4.85
39 40 1.202830 ACCGGTGATTTGTTACAGCCA 60.203 47.619 6.12 0.00 0.00 4.75
40 41 1.883275 CCGGTGATTTGTTACAGCCAA 59.117 47.619 0.00 0.00 0.00 4.52
41 42 2.351350 CCGGTGATTTGTTACAGCCAAC 60.351 50.000 0.00 0.00 0.00 3.77
42 43 2.292016 CGGTGATTTGTTACAGCCAACA 59.708 45.455 0.00 0.00 36.65 3.33
43 44 3.243234 CGGTGATTTGTTACAGCCAACAA 60.243 43.478 5.11 5.11 44.50 2.83
49 50 3.634568 TGTTACAGCCAACAAAATCGG 57.365 42.857 0.00 0.00 35.53 4.18
50 51 2.952978 TGTTACAGCCAACAAAATCGGT 59.047 40.909 0.00 0.00 35.53 4.69
51 52 3.381908 TGTTACAGCCAACAAAATCGGTT 59.618 39.130 0.00 0.00 35.53 4.44
52 53 4.579340 TGTTACAGCCAACAAAATCGGTTA 59.421 37.500 0.00 0.00 35.53 2.85
53 54 5.241949 TGTTACAGCCAACAAAATCGGTTAT 59.758 36.000 0.00 0.00 35.53 1.89
54 55 6.430308 TGTTACAGCCAACAAAATCGGTTATA 59.570 34.615 0.00 0.00 35.53 0.98
55 56 7.121463 TGTTACAGCCAACAAAATCGGTTATAT 59.879 33.333 0.00 0.00 35.53 0.86
56 57 6.131544 ACAGCCAACAAAATCGGTTATATC 57.868 37.500 0.00 0.00 0.00 1.63
57 58 5.650266 ACAGCCAACAAAATCGGTTATATCA 59.350 36.000 0.00 0.00 0.00 2.15
58 59 6.321181 ACAGCCAACAAAATCGGTTATATCAT 59.679 34.615 0.00 0.00 0.00 2.45
59 60 7.500892 ACAGCCAACAAAATCGGTTATATCATA 59.499 33.333 0.00 0.00 0.00 2.15
60 61 7.803189 CAGCCAACAAAATCGGTTATATCATAC 59.197 37.037 0.00 0.00 0.00 2.39
61 62 7.040686 AGCCAACAAAATCGGTTATATCATACC 60.041 37.037 0.00 0.00 0.00 2.73
70 71 5.277857 GGTTATATCATACCGGATCCCTG 57.722 47.826 9.46 0.00 0.00 4.45
71 72 4.960469 GGTTATATCATACCGGATCCCTGA 59.040 45.833 9.46 4.86 0.00 3.86
72 73 5.163437 GGTTATATCATACCGGATCCCTGAC 60.163 48.000 9.46 0.00 0.00 3.51
73 74 2.398754 ATCATACCGGATCCCTGACA 57.601 50.000 9.46 0.00 0.00 3.58
74 75 2.168458 TCATACCGGATCCCTGACAA 57.832 50.000 9.46 0.00 0.00 3.18
75 76 2.473070 TCATACCGGATCCCTGACAAA 58.527 47.619 9.46 0.00 0.00 2.83
76 77 2.841266 TCATACCGGATCCCTGACAAAA 59.159 45.455 9.46 0.00 0.00 2.44
77 78 3.264706 TCATACCGGATCCCTGACAAAAA 59.735 43.478 9.46 0.00 0.00 1.94
101 102 7.625828 AAACAACAACTATGCTATTCCTACC 57.374 36.000 0.00 0.00 0.00 3.18
102 103 5.357257 ACAACAACTATGCTATTCCTACCG 58.643 41.667 0.00 0.00 0.00 4.02
103 104 3.991367 ACAACTATGCTATTCCTACCGC 58.009 45.455 0.00 0.00 0.00 5.68
104 105 3.386726 ACAACTATGCTATTCCTACCGCA 59.613 43.478 0.00 0.00 36.75 5.69
105 106 4.040461 ACAACTATGCTATTCCTACCGCAT 59.960 41.667 0.00 0.00 44.47 4.73
106 107 4.193826 ACTATGCTATTCCTACCGCATG 57.806 45.455 5.91 0.00 42.50 4.06
107 108 1.813513 ATGCTATTCCTACCGCATGC 58.186 50.000 7.91 7.91 41.17 4.06
108 109 0.467804 TGCTATTCCTACCGCATGCA 59.532 50.000 19.57 0.00 0.00 3.96
109 110 0.868406 GCTATTCCTACCGCATGCAC 59.132 55.000 19.57 0.00 0.00 4.57
110 111 1.512926 CTATTCCTACCGCATGCACC 58.487 55.000 19.57 0.00 0.00 5.01
111 112 1.070758 CTATTCCTACCGCATGCACCT 59.929 52.381 19.57 0.91 0.00 4.00
112 113 0.179045 ATTCCTACCGCATGCACCTC 60.179 55.000 19.57 0.00 0.00 3.85
113 114 2.572095 TTCCTACCGCATGCACCTCG 62.572 60.000 19.57 0.00 0.00 4.63
114 115 2.184322 CTACCGCATGCACCTCGT 59.816 61.111 19.57 7.48 0.00 4.18
115 116 1.435925 CTACCGCATGCACCTCGTA 59.564 57.895 19.57 8.22 0.00 3.43
116 117 0.595053 CTACCGCATGCACCTCGTAG 60.595 60.000 19.57 13.57 0.00 3.51
117 118 2.011741 TACCGCATGCACCTCGTAGG 62.012 60.000 19.57 10.42 42.49 3.18
118 119 2.586079 CGCATGCACCTCGTAGGG 60.586 66.667 19.57 0.00 40.58 3.53
119 120 2.584608 GCATGCACCTCGTAGGGT 59.415 61.111 14.21 0.00 40.58 4.34
120 121 1.521681 GCATGCACCTCGTAGGGTC 60.522 63.158 14.21 0.00 40.58 4.46
121 122 1.144057 CATGCACCTCGTAGGGTCC 59.856 63.158 0.00 0.00 40.58 4.46
122 123 1.305802 ATGCACCTCGTAGGGTCCA 60.306 57.895 0.00 0.00 40.58 4.02
123 124 1.614241 ATGCACCTCGTAGGGTCCAC 61.614 60.000 0.00 0.00 40.58 4.02
124 125 3.015312 GCACCTCGTAGGGTCCACC 62.015 68.421 5.98 0.00 40.58 4.61
125 126 2.362120 ACCTCGTAGGGTCCACCG 60.362 66.667 5.98 0.00 46.96 4.94
126 127 2.044650 CCTCGTAGGGTCCACCGA 60.045 66.667 0.00 0.00 46.96 4.69
127 128 2.119655 CCTCGTAGGGTCCACCGAG 61.120 68.421 16.32 16.32 46.96 4.63
128 129 3.080641 TCGTAGGGTCCACCGAGA 58.919 61.111 0.00 0.00 46.96 4.04
129 130 1.379916 TCGTAGGGTCCACCGAGAA 59.620 57.895 0.00 0.00 46.96 2.87
130 131 0.251297 TCGTAGGGTCCACCGAGAAA 60.251 55.000 0.00 0.00 46.96 2.52
131 132 0.108945 CGTAGGGTCCACCGAGAAAC 60.109 60.000 0.00 0.00 46.96 2.78
132 133 0.108945 GTAGGGTCCACCGAGAAACG 60.109 60.000 0.00 0.00 46.96 3.60
172 173 4.404654 CTTTTGCTCGCCCACGCC 62.405 66.667 0.00 0.00 39.84 5.68
173 174 4.947147 TTTTGCTCGCCCACGCCT 62.947 61.111 0.00 0.00 39.84 5.52
174 175 4.947147 TTTGCTCGCCCACGCCTT 62.947 61.111 0.00 0.00 39.84 4.35
199 200 2.535934 GCACATCGGCGAAATTTACA 57.464 45.000 15.93 0.00 0.00 2.41
200 201 2.173964 GCACATCGGCGAAATTTACAC 58.826 47.619 15.93 0.00 0.00 2.90
201 202 2.427169 CACATCGGCGAAATTTACACG 58.573 47.619 15.93 0.00 0.00 4.49
202 203 1.395608 ACATCGGCGAAATTTACACGG 59.604 47.619 15.93 0.00 0.00 4.94
203 204 1.661617 CATCGGCGAAATTTACACGGA 59.338 47.619 15.93 0.00 0.00 4.69
204 205 2.012937 TCGGCGAAATTTACACGGAT 57.987 45.000 7.35 0.00 0.00 4.18
205 206 1.661617 TCGGCGAAATTTACACGGATG 59.338 47.619 7.35 0.00 0.00 3.51
206 207 1.267832 CGGCGAAATTTACACGGATGG 60.268 52.381 0.00 0.00 0.00 3.51
207 208 2.011222 GGCGAAATTTACACGGATGGA 58.989 47.619 0.00 0.00 0.00 3.41
208 209 2.223180 GGCGAAATTTACACGGATGGAC 60.223 50.000 0.00 0.00 0.00 4.02
209 210 2.536130 GCGAAATTTACACGGATGGACG 60.536 50.000 0.00 0.00 40.31 4.79
210 211 2.536130 CGAAATTTACACGGATGGACGC 60.536 50.000 0.00 0.00 37.37 5.19
211 212 1.375551 AATTTACACGGATGGACGCC 58.624 50.000 0.00 0.00 37.37 5.68
212 213 0.463116 ATTTACACGGATGGACGCCC 60.463 55.000 0.00 0.00 37.37 6.13
237 238 4.489771 CGGGCGAGCCAAATCCCT 62.490 66.667 16.65 0.00 36.61 4.20
238 239 2.830370 GGGCGAGCCAAATCCCTG 60.830 66.667 16.65 0.00 37.98 4.45
239 240 2.830370 GGCGAGCCAAATCCCTGG 60.830 66.667 9.58 0.00 39.71 4.45
245 246 4.984194 CCAAATCCCTGGCATCGA 57.016 55.556 0.00 0.00 0.00 3.59
246 247 3.426903 CCAAATCCCTGGCATCGAT 57.573 52.632 0.00 0.00 0.00 3.59
247 248 1.242076 CCAAATCCCTGGCATCGATC 58.758 55.000 0.00 0.00 0.00 3.69
248 249 1.242076 CAAATCCCTGGCATCGATCC 58.758 55.000 0.00 0.59 0.00 3.36
249 250 0.846015 AAATCCCTGGCATCGATCCA 59.154 50.000 13.64 13.64 0.00 3.41
250 251 0.846015 AATCCCTGGCATCGATCCAA 59.154 50.000 14.75 4.42 32.41 3.53
251 252 0.846015 ATCCCTGGCATCGATCCAAA 59.154 50.000 14.75 6.80 32.41 3.28
252 253 0.107214 TCCCTGGCATCGATCCAAAC 60.107 55.000 14.75 0.00 32.41 2.93
253 254 1.439353 CCCTGGCATCGATCCAAACG 61.439 60.000 14.75 6.42 32.41 3.60
254 255 0.461870 CCTGGCATCGATCCAAACGA 60.462 55.000 14.75 0.00 43.65 3.85
255 256 0.652592 CTGGCATCGATCCAAACGAC 59.347 55.000 14.75 0.00 42.37 4.34
256 257 0.742990 TGGCATCGATCCAAACGACC 60.743 55.000 12.41 0.00 42.37 4.79
257 258 0.742990 GGCATCGATCCAAACGACCA 60.743 55.000 0.00 0.00 42.37 4.02
258 259 0.373716 GCATCGATCCAAACGACCAC 59.626 55.000 0.00 0.00 42.37 4.16
259 260 1.006832 CATCGATCCAAACGACCACC 58.993 55.000 0.00 0.00 42.37 4.61
260 261 0.611200 ATCGATCCAAACGACCACCA 59.389 50.000 0.00 0.00 42.37 4.17
261 262 0.393448 TCGATCCAAACGACCACCAA 59.607 50.000 0.00 0.00 34.85 3.67
262 263 1.202663 TCGATCCAAACGACCACCAAA 60.203 47.619 0.00 0.00 34.85 3.28
263 264 1.810151 CGATCCAAACGACCACCAAAT 59.190 47.619 0.00 0.00 0.00 2.32
264 265 2.159572 CGATCCAAACGACCACCAAATC 60.160 50.000 0.00 0.00 0.00 2.17
265 266 2.649531 TCCAAACGACCACCAAATCT 57.350 45.000 0.00 0.00 0.00 2.40
266 267 2.500229 TCCAAACGACCACCAAATCTC 58.500 47.619 0.00 0.00 0.00 2.75
267 268 2.158740 TCCAAACGACCACCAAATCTCA 60.159 45.455 0.00 0.00 0.00 3.27
268 269 2.819608 CCAAACGACCACCAAATCTCAT 59.180 45.455 0.00 0.00 0.00 2.90
269 270 3.366273 CCAAACGACCACCAAATCTCATG 60.366 47.826 0.00 0.00 0.00 3.07
270 271 2.113860 ACGACCACCAAATCTCATGG 57.886 50.000 0.00 0.00 43.84 3.66
271 272 1.340017 ACGACCACCAAATCTCATGGG 60.340 52.381 0.00 0.00 42.48 4.00
272 273 1.106285 GACCACCAAATCTCATGGGC 58.894 55.000 0.00 0.00 42.48 5.36
273 274 0.706433 ACCACCAAATCTCATGGGCT 59.294 50.000 0.00 0.00 42.48 5.19
274 275 1.922447 ACCACCAAATCTCATGGGCTA 59.078 47.619 0.00 0.00 42.48 3.93
275 276 2.092212 ACCACCAAATCTCATGGGCTAG 60.092 50.000 0.00 0.00 42.48 3.42
276 277 1.952296 CACCAAATCTCATGGGCTAGC 59.048 52.381 6.04 6.04 42.48 3.42
277 278 1.133668 ACCAAATCTCATGGGCTAGCC 60.134 52.381 26.55 26.55 42.48 3.93
278 279 1.133699 CCAAATCTCATGGGCTAGCCA 60.134 52.381 34.09 20.63 37.98 4.75
279 280 2.658285 CAAATCTCATGGGCTAGCCAA 58.342 47.619 34.09 25.83 37.98 4.52
280 281 3.025978 CAAATCTCATGGGCTAGCCAAA 58.974 45.455 34.09 22.28 37.98 3.28
281 282 3.386932 AATCTCATGGGCTAGCCAAAA 57.613 42.857 34.09 19.68 37.98 2.44
282 283 3.607490 ATCTCATGGGCTAGCCAAAAT 57.393 42.857 34.09 21.00 37.98 1.82
283 284 3.386932 TCTCATGGGCTAGCCAAAATT 57.613 42.857 34.09 6.49 37.98 1.82
284 285 3.711863 TCTCATGGGCTAGCCAAAATTT 58.288 40.909 34.09 6.07 37.98 1.82
285 286 4.095946 TCTCATGGGCTAGCCAAAATTTT 58.904 39.130 34.09 5.63 37.98 1.82
286 287 4.081531 TCTCATGGGCTAGCCAAAATTTTG 60.082 41.667 34.09 21.65 37.98 2.44
297 298 2.765122 CAAAATTTTGGCATGGTCGGT 58.235 42.857 21.00 0.00 34.59 4.69
298 299 3.137533 CAAAATTTTGGCATGGTCGGTT 58.862 40.909 21.00 0.00 34.59 4.44
299 300 3.483808 AAATTTTGGCATGGTCGGTTT 57.516 38.095 0.00 0.00 0.00 3.27
300 301 3.483808 AATTTTGGCATGGTCGGTTTT 57.516 38.095 0.00 0.00 0.00 2.43
301 302 2.231215 TTTTGGCATGGTCGGTTTTG 57.769 45.000 0.00 0.00 0.00 2.44
302 303 0.390860 TTTGGCATGGTCGGTTTTGG 59.609 50.000 0.00 0.00 0.00 3.28
303 304 0.757188 TTGGCATGGTCGGTTTTGGT 60.757 50.000 0.00 0.00 0.00 3.67
304 305 0.110678 TGGCATGGTCGGTTTTGGTA 59.889 50.000 0.00 0.00 0.00 3.25
305 306 0.808755 GGCATGGTCGGTTTTGGTAG 59.191 55.000 0.00 0.00 0.00 3.18
306 307 1.530323 GCATGGTCGGTTTTGGTAGT 58.470 50.000 0.00 0.00 0.00 2.73
307 308 2.616001 GGCATGGTCGGTTTTGGTAGTA 60.616 50.000 0.00 0.00 0.00 1.82
308 309 3.075884 GCATGGTCGGTTTTGGTAGTAA 58.924 45.455 0.00 0.00 0.00 2.24
309 310 3.692593 GCATGGTCGGTTTTGGTAGTAAT 59.307 43.478 0.00 0.00 0.00 1.89
310 311 4.157105 GCATGGTCGGTTTTGGTAGTAATT 59.843 41.667 0.00 0.00 0.00 1.40
311 312 5.675323 GCATGGTCGGTTTTGGTAGTAATTC 60.675 44.000 0.00 0.00 0.00 2.17
312 313 4.970711 TGGTCGGTTTTGGTAGTAATTCA 58.029 39.130 0.00 0.00 0.00 2.57
313 314 5.374921 TGGTCGGTTTTGGTAGTAATTCAA 58.625 37.500 0.00 0.00 0.00 2.69
314 315 5.826737 TGGTCGGTTTTGGTAGTAATTCAAA 59.173 36.000 0.00 0.00 0.00 2.69
315 316 6.144854 GGTCGGTTTTGGTAGTAATTCAAAC 58.855 40.000 0.00 0.00 31.21 2.93
316 317 6.238703 GGTCGGTTTTGGTAGTAATTCAAACA 60.239 38.462 0.00 0.00 31.21 2.83
317 318 6.854381 GTCGGTTTTGGTAGTAATTCAAACAG 59.146 38.462 0.00 0.00 31.21 3.16
318 319 5.627780 CGGTTTTGGTAGTAATTCAAACAGC 59.372 40.000 0.00 0.00 31.21 4.40
319 320 5.924254 GGTTTTGGTAGTAATTCAAACAGCC 59.076 40.000 0.00 0.00 31.21 4.85
320 321 5.715434 TTTGGTAGTAATTCAAACAGCCC 57.285 39.130 0.00 0.00 0.00 5.19
321 322 3.692690 TGGTAGTAATTCAAACAGCCCC 58.307 45.455 0.00 0.00 0.00 5.80
322 323 2.681344 GGTAGTAATTCAAACAGCCCCG 59.319 50.000 0.00 0.00 0.00 5.73
323 324 2.579410 AGTAATTCAAACAGCCCCGT 57.421 45.000 0.00 0.00 0.00 5.28
324 325 2.871453 AGTAATTCAAACAGCCCCGTT 58.129 42.857 0.00 0.00 0.00 4.44
329 330 1.816074 TCAAACAGCCCCGTTATCAC 58.184 50.000 0.00 0.00 0.00 3.06
343 344 8.030692 GCCCCGTTATCACTTTAAATTTAGTTT 58.969 33.333 0.00 0.00 0.00 2.66
419 420 3.894547 ATGTGTCGGGTCGTTGGGC 62.895 63.158 0.00 0.00 0.00 5.36
469 470 4.345859 ACACTCATGTCCTTTTTACCGA 57.654 40.909 0.00 0.00 31.55 4.69
480 481 3.547601 CTTTTTACCGACGCAAACGAAT 58.452 40.909 0.00 0.00 43.93 3.34
481 482 4.377226 CCTTTTTACCGACGCAAACGAATA 60.377 41.667 0.00 0.00 43.93 1.75
482 483 4.925061 TTTTACCGACGCAAACGAATAT 57.075 36.364 0.00 0.00 43.93 1.28
483 484 6.400579 TTTTTACCGACGCAAACGAATATA 57.599 33.333 0.00 0.00 43.93 0.86
484 485 6.400579 TTTTACCGACGCAAACGAATATAA 57.599 33.333 0.00 0.00 43.93 0.98
485 486 6.586868 TTTACCGACGCAAACGAATATAAT 57.413 33.333 0.00 0.00 43.93 1.28
486 487 4.703899 ACCGACGCAAACGAATATAATC 57.296 40.909 0.00 0.00 43.93 1.75
487 488 3.492011 ACCGACGCAAACGAATATAATCC 59.508 43.478 0.00 0.00 43.93 3.01
488 489 3.421312 CCGACGCAAACGAATATAATCCG 60.421 47.826 0.00 0.00 43.93 4.18
518 519 2.356330 GGATGTCCATTTACCGTTGGGA 60.356 50.000 0.00 0.00 34.70 4.37
528 529 0.179029 ACCGTTGGGAGTTGGAGTTG 60.179 55.000 0.00 0.00 36.97 3.16
529 530 0.889186 CCGTTGGGAGTTGGAGTTGG 60.889 60.000 0.00 0.00 34.06 3.77
530 531 0.179029 CGTTGGGAGTTGGAGTTGGT 60.179 55.000 0.00 0.00 0.00 3.67
531 532 1.605753 GTTGGGAGTTGGAGTTGGTC 58.394 55.000 0.00 0.00 0.00 4.02
533 534 2.370849 GTTGGGAGTTGGAGTTGGTCTA 59.629 50.000 0.00 0.00 0.00 2.59
534 535 2.696775 TGGGAGTTGGAGTTGGTCTAA 58.303 47.619 0.00 0.00 0.00 2.10
535 536 2.637872 TGGGAGTTGGAGTTGGTCTAAG 59.362 50.000 0.00 0.00 0.00 2.18
537 538 3.055747 GGGAGTTGGAGTTGGTCTAAGAG 60.056 52.174 0.00 0.00 0.00 2.85
540 541 3.584848 AGTTGGAGTTGGTCTAAGAGCAT 59.415 43.478 0.00 0.00 39.81 3.79
554 555 1.719600 GAGCATCTTCAACAGTCGCT 58.280 50.000 0.00 0.00 34.85 4.93
555 556 1.658095 GAGCATCTTCAACAGTCGCTC 59.342 52.381 0.00 0.00 39.26 5.03
556 557 1.001293 AGCATCTTCAACAGTCGCTCA 59.999 47.619 0.00 0.00 0.00 4.26
557 558 1.800586 GCATCTTCAACAGTCGCTCAA 59.199 47.619 0.00 0.00 0.00 3.02
558 559 2.224079 GCATCTTCAACAGTCGCTCAAA 59.776 45.455 0.00 0.00 0.00 2.69
559 560 3.303990 GCATCTTCAACAGTCGCTCAAAA 60.304 43.478 0.00 0.00 0.00 2.44
560 561 4.789481 GCATCTTCAACAGTCGCTCAAAAA 60.789 41.667 0.00 0.00 0.00 1.94
575 576 1.081242 AAAAATGCCTGACGCGCTG 60.081 52.632 5.73 3.03 42.08 5.18
576 577 1.514678 AAAAATGCCTGACGCGCTGA 61.515 50.000 5.73 0.00 42.08 4.26
578 579 1.514678 AAATGCCTGACGCGCTGAAA 61.515 50.000 5.73 0.00 42.08 2.69
579 580 1.514678 AATGCCTGACGCGCTGAAAA 61.515 50.000 5.73 0.00 42.08 2.29
581 582 2.556287 CCTGACGCGCTGAAAACC 59.444 61.111 5.73 0.00 0.00 3.27
582 583 2.250939 CCTGACGCGCTGAAAACCA 61.251 57.895 5.73 0.00 0.00 3.67
583 584 1.577328 CCTGACGCGCTGAAAACCAT 61.577 55.000 5.73 0.00 0.00 3.55
584 585 0.179215 CTGACGCGCTGAAAACCATC 60.179 55.000 5.73 0.00 0.00 3.51
585 586 1.225745 GACGCGCTGAAAACCATCG 60.226 57.895 5.73 0.00 37.45 3.84
587 588 1.206578 CGCGCTGAAAACCATCGTT 59.793 52.632 5.56 0.00 36.81 3.85
597 598 2.217429 AACCATCGTTTTTGTGTGCC 57.783 45.000 0.00 0.00 0.00 5.01
598 599 0.030101 ACCATCGTTTTTGTGTGCCG 59.970 50.000 0.00 0.00 0.00 5.69
599 600 0.662970 CCATCGTTTTTGTGTGCCGG 60.663 55.000 0.00 0.00 0.00 6.13
600 601 0.309302 CATCGTTTTTGTGTGCCGGA 59.691 50.000 5.05 0.00 0.00 5.14
602 603 0.462225 TCGTTTTTGTGTGCCGGAGA 60.462 50.000 5.05 0.00 0.00 3.71
603 604 0.316689 CGTTTTTGTGTGCCGGAGAC 60.317 55.000 5.05 0.15 0.00 3.36
604 605 0.736053 GTTTTTGTGTGCCGGAGACA 59.264 50.000 5.05 3.61 0.00 3.41
606 607 1.464734 TTTTGTGTGCCGGAGACAAA 58.535 45.000 18.63 18.63 43.98 2.83
607 608 1.464734 TTTGTGTGCCGGAGACAAAA 58.535 45.000 19.60 13.63 43.03 2.44
623 727 3.557207 AAAAACAGCGCTTCAGCAG 57.443 47.368 7.50 0.00 42.21 4.24
627 731 0.308993 AACAGCGCTTCAGCAGAAAC 59.691 50.000 7.50 0.00 42.21 2.78
628 732 0.533755 ACAGCGCTTCAGCAGAAACT 60.534 50.000 7.50 0.00 42.21 2.66
629 733 0.110328 CAGCGCTTCAGCAGAAACTG 60.110 55.000 7.50 0.00 42.21 3.16
637 741 6.017933 CGCTTCAGCAGAAACTGTAAAATAG 58.982 40.000 0.00 0.00 42.21 1.73
639 743 7.239972 GCTTCAGCAGAAACTGTAAAATAGAG 58.760 38.462 0.00 0.00 41.59 2.43
641 745 6.467677 TCAGCAGAAACTGTAAAATAGAGCT 58.532 36.000 0.00 0.00 38.84 4.09
642 746 6.591834 TCAGCAGAAACTGTAAAATAGAGCTC 59.408 38.462 5.27 5.27 38.84 4.09
644 748 5.725316 GCAGAAACTGTAAAATAGAGCTCGC 60.725 44.000 8.37 0.00 33.43 5.03
646 750 6.036517 CAGAAACTGTAAAATAGAGCTCGCAT 59.963 38.462 8.37 2.87 0.00 4.73
647 751 7.222805 CAGAAACTGTAAAATAGAGCTCGCATA 59.777 37.037 8.37 0.00 0.00 3.14
650 754 7.843490 ACTGTAAAATAGAGCTCGCATAAAA 57.157 32.000 8.37 0.00 0.00 1.52
651 755 8.263940 ACTGTAAAATAGAGCTCGCATAAAAA 57.736 30.769 8.37 0.00 0.00 1.94
685 789 1.594331 GCTAAAAGCGGTATCCCAGG 58.406 55.000 0.00 0.00 0.00 4.45
687 791 1.141053 CTAAAAGCGGTATCCCAGGCT 59.859 52.381 0.00 0.00 37.33 4.58
689 793 0.107165 AAAGCGGTATCCCAGGCTTC 60.107 55.000 0.00 0.00 44.34 3.86
690 794 1.271840 AAGCGGTATCCCAGGCTTCA 61.272 55.000 0.00 0.00 41.57 3.02
694 798 1.065418 CGGTATCCCAGGCTTCAAACT 60.065 52.381 0.00 0.00 0.00 2.66
695 799 2.618045 CGGTATCCCAGGCTTCAAACTT 60.618 50.000 0.00 0.00 0.00 2.66
696 800 3.431415 GGTATCCCAGGCTTCAAACTTT 58.569 45.455 0.00 0.00 0.00 2.66
697 801 3.193479 GGTATCCCAGGCTTCAAACTTTG 59.807 47.826 0.00 0.00 0.00 2.77
698 802 1.703411 TCCCAGGCTTCAAACTTTGG 58.297 50.000 1.62 0.00 0.00 3.28
699 803 0.681175 CCCAGGCTTCAAACTTTGGG 59.319 55.000 1.62 0.00 39.31 4.12
700 804 0.033920 CCAGGCTTCAAACTTTGGGC 59.966 55.000 1.62 6.73 0.00 5.36
701 805 0.318955 CAGGCTTCAAACTTTGGGCG 60.319 55.000 1.62 0.00 33.19 6.13
702 806 1.664649 GGCTTCAAACTTTGGGCGC 60.665 57.895 0.00 0.00 33.19 6.53
703 807 1.664649 GCTTCAAACTTTGGGCGCC 60.665 57.895 21.18 21.18 0.00 6.53
704 808 1.371635 CTTCAAACTTTGGGCGCCG 60.372 57.895 22.54 9.21 0.00 6.46
705 809 2.747507 CTTCAAACTTTGGGCGCCGG 62.748 60.000 22.54 12.86 0.00 6.13
706 810 3.291383 CAAACTTTGGGCGCCGGA 61.291 61.111 22.54 8.55 0.00 5.14
707 811 2.282887 AAACTTTGGGCGCCGGAT 60.283 55.556 22.54 0.11 0.00 4.18
708 812 1.906333 AAACTTTGGGCGCCGGATT 60.906 52.632 22.54 7.31 0.00 3.01
709 813 2.153547 AAACTTTGGGCGCCGGATTG 62.154 55.000 22.54 11.78 0.00 2.67
710 814 3.061848 CTTTGGGCGCCGGATTGT 61.062 61.111 22.54 0.00 0.00 2.71
711 815 3.340953 CTTTGGGCGCCGGATTGTG 62.341 63.158 22.54 2.54 0.00 3.33
718 822 4.465512 GCCGGATTGTGCACGCTG 62.466 66.667 13.13 9.03 0.00 5.18
719 823 3.049674 CCGGATTGTGCACGCTGT 61.050 61.111 13.13 0.00 0.00 4.40
720 824 1.739929 CCGGATTGTGCACGCTGTA 60.740 57.895 13.13 0.00 0.00 2.74
721 825 1.295357 CCGGATTGTGCACGCTGTAA 61.295 55.000 13.13 0.01 0.00 2.41
722 826 0.515127 CGGATTGTGCACGCTGTAAA 59.485 50.000 13.13 0.00 0.00 2.01
723 827 1.069568 CGGATTGTGCACGCTGTAAAA 60.070 47.619 13.13 0.00 0.00 1.52
724 828 2.414029 CGGATTGTGCACGCTGTAAAAT 60.414 45.455 13.13 4.11 0.00 1.82
725 829 3.171277 GGATTGTGCACGCTGTAAAATC 58.829 45.455 13.13 12.97 36.39 2.17
727 831 0.515127 TGTGCACGCTGTAAAATCCG 59.485 50.000 13.13 0.00 0.00 4.18
730 834 1.427819 CACGCTGTAAAATCCGGGC 59.572 57.895 0.00 0.00 0.00 6.13
732 836 0.743345 ACGCTGTAAAATCCGGGCTC 60.743 55.000 0.00 0.00 0.00 4.70
734 838 0.743345 GCTGTAAAATCCGGGCTCGT 60.743 55.000 4.71 0.00 33.95 4.18
735 839 1.006832 CTGTAAAATCCGGGCTCGTG 58.993 55.000 4.71 0.00 33.95 4.35
737 841 1.022451 GTAAAATCCGGGCTCGTGCA 61.022 55.000 4.71 0.00 41.91 4.57
738 842 0.321741 TAAAATCCGGGCTCGTGCAA 60.322 50.000 4.71 0.00 41.91 4.08
741 845 1.895020 AATCCGGGCTCGTGCAAGTA 61.895 55.000 4.71 0.00 41.91 2.24
742 846 2.298158 ATCCGGGCTCGTGCAAGTAG 62.298 60.000 4.71 0.00 41.91 2.57
747 851 3.188786 CTCGTGCAAGTAGGGCGC 61.189 66.667 0.00 0.00 38.36 6.53
748 852 4.752879 TCGTGCAAGTAGGGCGCC 62.753 66.667 21.18 21.18 38.50 6.53
752 856 4.547367 GCAAGTAGGGCGCCGGAT 62.547 66.667 22.54 11.75 0.00 4.18
754 858 2.180204 CAAGTAGGGCGCCGGATTG 61.180 63.158 22.54 17.96 0.00 2.67
766 870 2.625823 CGGATTGGGCGCAGTGTTT 61.626 57.895 10.83 0.00 0.00 2.83
767 871 1.665442 GGATTGGGCGCAGTGTTTT 59.335 52.632 10.83 0.00 0.00 2.43
768 872 0.033366 GGATTGGGCGCAGTGTTTTT 59.967 50.000 10.83 0.00 0.00 1.94
769 873 1.139163 GATTGGGCGCAGTGTTTTTG 58.861 50.000 10.83 0.00 0.00 2.44
770 874 0.463620 ATTGGGCGCAGTGTTTTTGT 59.536 45.000 10.83 0.00 0.00 2.83
771 875 0.459237 TTGGGCGCAGTGTTTTTGTG 60.459 50.000 10.83 0.00 0.00 3.33
776 880 1.558741 CGCAGTGTTTTTGTGCATGT 58.441 45.000 0.00 0.00 37.01 3.21
777 881 1.255859 CGCAGTGTTTTTGTGCATGTG 59.744 47.619 0.00 0.00 37.01 3.21
778 882 2.538437 GCAGTGTTTTTGTGCATGTGA 58.462 42.857 0.00 0.00 37.16 3.58
779 883 2.928757 GCAGTGTTTTTGTGCATGTGAA 59.071 40.909 0.00 0.00 37.16 3.18
780 884 3.370366 GCAGTGTTTTTGTGCATGTGAAA 59.630 39.130 0.00 0.00 37.16 2.69
781 885 4.142945 GCAGTGTTTTTGTGCATGTGAAAA 60.143 37.500 0.00 0.00 37.16 2.29
782 886 5.616424 GCAGTGTTTTTGTGCATGTGAAAAA 60.616 36.000 0.00 1.35 37.16 1.94
783 887 5.789512 CAGTGTTTTTGTGCATGTGAAAAAC 59.210 36.000 22.03 22.03 44.39 2.43
784 888 5.700373 AGTGTTTTTGTGCATGTGAAAAACT 59.300 32.000 25.36 16.11 44.42 2.66
785 889 6.204495 AGTGTTTTTGTGCATGTGAAAAACTT 59.796 30.769 25.36 17.72 44.42 2.66
786 890 6.519419 GTGTTTTTGTGCATGTGAAAAACTTC 59.481 34.615 25.36 19.29 44.42 3.01
787 891 6.426328 TGTTTTTGTGCATGTGAAAAACTTCT 59.574 30.769 25.36 0.00 44.42 2.85
788 892 7.041508 TGTTTTTGTGCATGTGAAAAACTTCTT 60.042 29.630 25.36 0.00 44.42 2.52
789 893 6.645700 TTTGTGCATGTGAAAAACTTCTTC 57.354 33.333 0.00 0.00 0.00 2.87
790 894 4.350346 TGTGCATGTGAAAAACTTCTTCG 58.650 39.130 0.00 0.00 0.00 3.79
791 895 4.142491 TGTGCATGTGAAAAACTTCTTCGT 60.142 37.500 0.00 0.00 0.00 3.85
792 896 4.437820 GTGCATGTGAAAAACTTCTTCGTC 59.562 41.667 0.00 0.00 0.00 4.20
793 897 3.659444 GCATGTGAAAAACTTCTTCGTCG 59.341 43.478 0.00 0.00 0.00 5.12
794 898 3.313274 TGTGAAAAACTTCTTCGTCGC 57.687 42.857 0.00 0.00 0.00 5.19
795 899 2.933906 TGTGAAAAACTTCTTCGTCGCT 59.066 40.909 0.00 0.00 0.00 4.93
796 900 3.000925 TGTGAAAAACTTCTTCGTCGCTC 59.999 43.478 0.00 0.00 0.00 5.03
797 901 2.542595 TGAAAAACTTCTTCGTCGCTCC 59.457 45.455 0.00 0.00 0.00 4.70
798 902 1.509703 AAAACTTCTTCGTCGCTCCC 58.490 50.000 0.00 0.00 0.00 4.30
799 903 0.666577 AAACTTCTTCGTCGCTCCCG 60.667 55.000 0.00 0.00 0.00 5.14
800 904 2.881352 CTTCTTCGTCGCTCCCGC 60.881 66.667 0.00 0.00 0.00 6.13
801 905 3.343788 CTTCTTCGTCGCTCCCGCT 62.344 63.158 0.00 0.00 0.00 5.52
802 906 1.989966 CTTCTTCGTCGCTCCCGCTA 61.990 60.000 0.00 0.00 0.00 4.26
803 907 1.381928 TTCTTCGTCGCTCCCGCTAT 61.382 55.000 0.00 0.00 0.00 2.97
804 908 0.533531 TCTTCGTCGCTCCCGCTATA 60.534 55.000 0.00 0.00 0.00 1.31
805 909 0.309922 CTTCGTCGCTCCCGCTATAA 59.690 55.000 0.00 0.00 0.00 0.98
806 910 0.740149 TTCGTCGCTCCCGCTATAAA 59.260 50.000 0.00 0.00 0.00 1.40
807 911 0.740149 TCGTCGCTCCCGCTATAAAA 59.260 50.000 0.00 0.00 0.00 1.52
808 912 1.134753 TCGTCGCTCCCGCTATAAAAA 59.865 47.619 0.00 0.00 0.00 1.94
841 945 9.757859 TTTTAACGCTGTAAAAGAATTATACCG 57.242 29.630 0.00 0.00 31.10 4.02
842 946 5.399604 ACGCTGTAAAAGAATTATACCGC 57.600 39.130 0.00 0.00 0.00 5.68
843 947 4.442705 CGCTGTAAAAGAATTATACCGCG 58.557 43.478 0.00 0.00 43.21 6.46
844 948 4.209112 GCTGTAAAAGAATTATACCGCGC 58.791 43.478 0.00 0.00 0.00 6.86
845 949 4.769215 CTGTAAAAGAATTATACCGCGCC 58.231 43.478 0.00 0.00 0.00 6.53
846 950 3.245754 TGTAAAAGAATTATACCGCGCCG 59.754 43.478 0.00 0.00 0.00 6.46
847 951 2.228138 AAAGAATTATACCGCGCCGA 57.772 45.000 0.00 0.00 0.00 5.54
848 952 1.779569 AAGAATTATACCGCGCCGAG 58.220 50.000 0.00 0.00 0.00 4.63
849 953 0.956633 AGAATTATACCGCGCCGAGA 59.043 50.000 0.00 0.00 0.00 4.04
850 954 1.058404 GAATTATACCGCGCCGAGAC 58.942 55.000 0.00 0.00 0.00 3.36
851 955 0.662374 AATTATACCGCGCCGAGACG 60.662 55.000 0.00 0.00 0.00 4.18
852 956 1.509644 ATTATACCGCGCCGAGACGA 61.510 55.000 0.00 0.00 34.06 4.20
853 957 1.713937 TTATACCGCGCCGAGACGAA 61.714 55.000 0.00 0.00 34.06 3.85
854 958 1.713937 TATACCGCGCCGAGACGAAA 61.714 55.000 0.00 0.00 34.06 3.46
855 959 3.827788 TATACCGCGCCGAGACGAAAC 62.828 57.143 0.00 0.00 34.06 2.78
861 965 3.179265 CCGAGACGAAACGCGCAT 61.179 61.111 5.73 0.00 46.04 4.73
862 966 2.018670 CGAGACGAAACGCGCATG 59.981 61.111 5.73 0.00 46.04 4.06
863 967 2.716828 CGAGACGAAACGCGCATGT 61.717 57.895 5.73 0.00 46.04 3.21
864 968 1.491563 GAGACGAAACGCGCATGTT 59.508 52.632 5.73 0.54 46.04 2.71
865 969 0.110823 GAGACGAAACGCGCATGTTT 60.111 50.000 5.73 12.37 46.04 2.83
866 970 0.384230 AGACGAAACGCGCATGTTTG 60.384 50.000 16.54 8.86 46.04 2.93
867 971 1.327292 GACGAAACGCGCATGTTTGG 61.327 55.000 16.54 16.78 46.04 3.28
868 972 1.082431 CGAAACGCGCATGTTTGGA 60.082 52.632 16.54 0.00 41.89 3.53
869 973 1.059657 CGAAACGCGCATGTTTGGAG 61.060 55.000 16.54 5.90 41.89 3.86
870 974 0.237235 GAAACGCGCATGTTTGGAGA 59.763 50.000 16.54 0.00 41.89 3.71
871 975 0.881118 AAACGCGCATGTTTGGAGAT 59.119 45.000 5.73 0.00 40.40 2.75
872 976 0.168788 AACGCGCATGTTTGGAGATG 59.831 50.000 5.73 0.00 0.00 2.90
873 977 1.584483 CGCGCATGTTTGGAGATGC 60.584 57.895 8.75 0.00 46.11 3.91
930 1034 4.260784 GGTCAAATCACGATATCACCAAGC 60.261 45.833 3.12 0.00 0.00 4.01
935 1039 4.406648 TCACGATATCACCAAGCTTCAT 57.593 40.909 0.00 0.00 0.00 2.57
946 1050 1.400846 CAAGCTTCATTGCTGAGCGAT 59.599 47.619 0.16 0.16 43.24 4.58
949 1053 2.097142 AGCTTCATTGCTGAGCGATTTC 59.903 45.455 3.98 0.00 42.33 2.17
963 1067 5.007039 TGAGCGATTTCTTGATTGCTACATC 59.993 40.000 0.00 0.00 44.78 3.06
1049 1154 0.165511 CTGCTCGCTTTTCTGTCTGC 59.834 55.000 0.00 0.00 0.00 4.26
1155 1272 4.070552 GGCGTCTTCCAGCTCGGT 62.071 66.667 2.68 0.00 35.57 4.69
1322 1439 4.373116 GCTCCTCGACGCCACCAA 62.373 66.667 0.00 0.00 0.00 3.67
1329 1446 0.173935 TCGACGCCACCAACGATAAT 59.826 50.000 0.00 0.00 0.00 1.28
1358 1475 1.080705 GGTCGTCCAACTCCTCGTG 60.081 63.158 0.00 0.00 0.00 4.35
1359 1476 1.080705 GTCGTCCAACTCCTCGTGG 60.081 63.158 0.00 0.00 0.00 4.94
1360 1477 2.261671 CGTCCAACTCCTCGTGGG 59.738 66.667 3.23 0.00 38.15 4.61
1361 1478 2.047179 GTCCAACTCCTCGTGGGC 60.047 66.667 3.23 0.00 36.57 5.36
1362 1479 3.691342 TCCAACTCCTCGTGGGCG 61.691 66.667 3.23 0.00 36.57 6.13
2333 2491 7.201522 GCTTCGGATCCAAAATCCAAAATAAAC 60.202 37.037 13.41 0.00 38.08 2.01
2335 2493 5.518487 CGGATCCAAAATCCAAAATAAACCG 59.482 40.000 13.41 0.00 38.08 4.44
2463 2625 6.980051 ACAAGATCACCTTAATTTCCGTAC 57.020 37.500 0.00 0.00 32.86 3.67
2822 3597 6.954944 TGAAATCAGACTTTTTGAGTTACCG 58.045 36.000 0.00 0.00 39.19 4.02
2823 3598 5.941948 AATCAGACTTTTTGAGTTACCGG 57.058 39.130 0.00 0.00 39.19 5.28
3159 4038 2.582226 GTCGTGATCATCGCCGCA 60.582 61.111 0.00 0.00 0.00 5.69
3336 4260 5.415701 TGTATTTGTTGCTTCCTTCTCCATC 59.584 40.000 0.00 0.00 0.00 3.51
3376 4302 3.169512 TGACATGGTGAGAGGTGAGTA 57.830 47.619 0.00 0.00 0.00 2.59
3867 7074 5.126707 ACTGCAGTATACCAGTTACTACCAC 59.873 44.000 20.16 0.00 39.11 4.16
4054 7276 0.679002 ACGTTCTCCTCGATCGGGAA 60.679 55.000 18.72 12.30 38.75 3.97
4262 7521 6.033196 CGATTTCTTGACTGATTTTGCATGAC 59.967 38.462 0.00 0.00 0.00 3.06
4914 8451 2.350522 GTCGAGCTGACCATCACAAAT 58.649 47.619 0.00 0.00 42.04 2.32
4954 8491 0.541296 ATGCAAGGCAAGCTGGAACT 60.541 50.000 0.00 0.00 43.62 3.01
5005 8542 6.575244 TCTCAATGTTATTGGGTAGGACAT 57.425 37.500 1.74 0.00 32.70 3.06
5106 8772 6.942532 ATGCTATGTGGGTTTGTACTATTG 57.057 37.500 0.00 0.00 0.00 1.90
5243 8910 4.219725 CCTTATGTTGGGAATCGTTTTGGT 59.780 41.667 0.00 0.00 0.00 3.67
5302 8969 3.005155 GGGCCTTCATATCACTTCAATGC 59.995 47.826 0.84 0.00 0.00 3.56
5393 9061 0.396435 TGTCACGTTCATTGAGCCCT 59.604 50.000 0.00 0.00 0.00 5.19
5483 9152 4.714632 ACCTCTCTCTTATCTCTTCCTCG 58.285 47.826 0.00 0.00 0.00 4.63
5545 9228 2.423446 GCTATCAGGGAGGTGCGG 59.577 66.667 0.00 0.00 0.00 5.69
5589 9272 2.761195 CGCGTCCCTCACATCGAGA 61.761 63.158 0.00 0.00 45.45 4.04
5598 9281 2.033424 CCTCACATCGAGATAAGACGCA 59.967 50.000 0.00 0.00 45.45 5.24
5622 9305 2.561569 GCCTAGTCGCACATGGTAATT 58.438 47.619 0.00 0.00 0.00 1.40
5655 9338 5.280499 TCTTCCAATCTCATCTAGGGTTCA 58.720 41.667 0.00 0.00 0.00 3.18
5675 9361 3.447586 TCAAGAAATCCAGTAGCGCTAGT 59.552 43.478 19.48 19.29 0.00 2.57
5703 9389 3.943137 TTCCTCCGCCACCTCCCAT 62.943 63.158 0.00 0.00 0.00 4.00
5775 9461 2.930887 GCTTTGGCGTACTCAGATCACA 60.931 50.000 0.00 0.00 0.00 3.58
5803 9489 0.325203 GAGAGGGGCAGGTCTCTTCT 60.325 60.000 0.00 0.00 40.12 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.811679 GTCAGCCAGCGCTTCTACC 60.812 63.158 7.50 0.00 45.55 3.18
3 4 1.811679 GGTCAGCCAGCGCTTCTAC 60.812 63.158 7.50 1.47 45.55 2.59
5 6 4.749310 CGGTCAGCCAGCGCTTCT 62.749 66.667 7.50 4.88 45.55 2.85
10 11 3.958147 AATCACCGGTCAGCCAGCG 62.958 63.158 2.59 0.00 46.00 5.18
11 12 1.675641 AAATCACCGGTCAGCCAGC 60.676 57.895 2.59 0.00 34.09 4.85
12 13 0.606401 ACAAATCACCGGTCAGCCAG 60.606 55.000 2.59 0.00 34.09 4.85
13 14 0.179004 AACAAATCACCGGTCAGCCA 60.179 50.000 2.59 0.00 34.09 4.75
14 15 1.467342 GTAACAAATCACCGGTCAGCC 59.533 52.381 2.59 0.00 0.00 4.85
15 16 2.147958 TGTAACAAATCACCGGTCAGC 58.852 47.619 2.59 0.00 0.00 4.26
16 17 2.159627 GCTGTAACAAATCACCGGTCAG 59.840 50.000 2.59 6.98 0.00 3.51
17 18 2.147958 GCTGTAACAAATCACCGGTCA 58.852 47.619 2.59 0.00 0.00 4.02
18 19 1.467342 GGCTGTAACAAATCACCGGTC 59.533 52.381 2.59 0.00 0.00 4.79
19 20 1.202830 TGGCTGTAACAAATCACCGGT 60.203 47.619 0.00 0.00 0.00 5.28
20 21 1.529226 TGGCTGTAACAAATCACCGG 58.471 50.000 0.00 0.00 0.00 5.28
21 22 2.292016 TGTTGGCTGTAACAAATCACCG 59.708 45.455 0.00 0.00 37.60 4.94
22 23 4.314740 TTGTTGGCTGTAACAAATCACC 57.685 40.909 10.50 0.00 44.84 4.02
28 29 3.381908 ACCGATTTTGTTGGCTGTAACAA 59.618 39.130 9.35 9.35 45.78 2.83
29 30 2.952978 ACCGATTTTGTTGGCTGTAACA 59.047 40.909 0.00 0.00 38.69 2.41
30 31 3.636282 ACCGATTTTGTTGGCTGTAAC 57.364 42.857 0.00 0.00 34.32 2.50
31 32 5.968528 ATAACCGATTTTGTTGGCTGTAA 57.031 34.783 0.00 0.00 34.32 2.41
32 33 6.824196 TGATATAACCGATTTTGTTGGCTGTA 59.176 34.615 0.00 0.00 34.32 2.74
33 34 5.650266 TGATATAACCGATTTTGTTGGCTGT 59.350 36.000 0.00 0.00 34.32 4.40
34 35 6.130298 TGATATAACCGATTTTGTTGGCTG 57.870 37.500 0.00 0.00 34.32 4.85
35 36 6.959639 ATGATATAACCGATTTTGTTGGCT 57.040 33.333 0.00 0.00 34.32 4.75
36 37 7.081976 GGTATGATATAACCGATTTTGTTGGC 58.918 38.462 0.00 0.00 34.32 4.52
48 49 4.960469 TCAGGGATCCGGTATGATATAACC 59.040 45.833 5.45 0.00 0.00 2.85
49 50 5.421056 TGTCAGGGATCCGGTATGATATAAC 59.579 44.000 5.45 0.00 0.00 1.89
50 51 5.585894 TGTCAGGGATCCGGTATGATATAA 58.414 41.667 5.45 0.00 0.00 0.98
51 52 5.201363 TGTCAGGGATCCGGTATGATATA 57.799 43.478 5.45 0.00 0.00 0.86
52 53 4.061131 TGTCAGGGATCCGGTATGATAT 57.939 45.455 5.45 0.00 0.00 1.63
53 54 3.536075 TGTCAGGGATCCGGTATGATA 57.464 47.619 5.45 3.19 0.00 2.15
54 55 2.398754 TGTCAGGGATCCGGTATGAT 57.601 50.000 5.45 0.00 0.00 2.45
55 56 2.168458 TTGTCAGGGATCCGGTATGA 57.832 50.000 5.45 4.63 0.00 2.15
56 57 3.275617 TTTTGTCAGGGATCCGGTATG 57.724 47.619 5.45 2.13 0.00 2.39
75 76 8.520351 GGTAGGAATAGCATAGTTGTTGTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
76 77 7.148306 CGGTAGGAATAGCATAGTTGTTGTTTT 60.148 37.037 0.00 0.00 0.00 2.43
77 78 6.315393 CGGTAGGAATAGCATAGTTGTTGTTT 59.685 38.462 0.00 0.00 0.00 2.83
78 79 5.815740 CGGTAGGAATAGCATAGTTGTTGTT 59.184 40.000 0.00 0.00 0.00 2.83
79 80 5.357257 CGGTAGGAATAGCATAGTTGTTGT 58.643 41.667 0.00 0.00 0.00 3.32
80 81 4.211374 GCGGTAGGAATAGCATAGTTGTTG 59.789 45.833 0.00 0.00 0.00 3.33
81 82 4.141801 TGCGGTAGGAATAGCATAGTTGTT 60.142 41.667 0.00 0.00 34.39 2.83
82 83 3.386726 TGCGGTAGGAATAGCATAGTTGT 59.613 43.478 0.00 0.00 34.39 3.32
83 84 3.990092 TGCGGTAGGAATAGCATAGTTG 58.010 45.455 0.00 0.00 34.39 3.16
84 85 4.891992 ATGCGGTAGGAATAGCATAGTT 57.108 40.909 0.00 0.00 46.93 2.24
89 90 0.467804 TGCATGCGGTAGGAATAGCA 59.532 50.000 14.09 0.00 44.13 3.49
90 91 0.868406 GTGCATGCGGTAGGAATAGC 59.132 55.000 14.09 0.00 0.00 2.97
91 92 1.070758 AGGTGCATGCGGTAGGAATAG 59.929 52.381 14.09 0.00 0.00 1.73
92 93 1.070134 GAGGTGCATGCGGTAGGAATA 59.930 52.381 14.09 0.00 0.00 1.75
93 94 0.179045 GAGGTGCATGCGGTAGGAAT 60.179 55.000 14.09 0.00 0.00 3.01
94 95 1.220749 GAGGTGCATGCGGTAGGAA 59.779 57.895 14.09 0.00 0.00 3.36
95 96 2.900273 GAGGTGCATGCGGTAGGA 59.100 61.111 14.09 0.00 0.00 2.94
96 97 2.011741 TACGAGGTGCATGCGGTAGG 62.012 60.000 14.09 4.76 0.00 3.18
97 98 0.595053 CTACGAGGTGCATGCGGTAG 60.595 60.000 14.09 14.10 0.00 3.18
98 99 1.435925 CTACGAGGTGCATGCGGTA 59.564 57.895 14.09 8.85 0.00 4.02
99 100 2.184322 CTACGAGGTGCATGCGGT 59.816 61.111 14.09 8.16 0.00 5.68
100 101 2.586079 CCTACGAGGTGCATGCGG 60.586 66.667 14.09 0.97 0.00 5.69
101 102 2.586079 CCCTACGAGGTGCATGCG 60.586 66.667 14.09 0.00 31.93 4.73
102 103 1.521681 GACCCTACGAGGTGCATGC 60.522 63.158 11.82 11.82 41.42 4.06
103 104 1.144057 GGACCCTACGAGGTGCATG 59.856 63.158 9.79 0.00 46.81 4.06
104 105 3.630289 GGACCCTACGAGGTGCAT 58.370 61.111 9.79 0.00 46.81 3.96
107 108 2.707849 CGGTGGACCCTACGAGGTG 61.708 68.421 1.34 0.00 41.42 4.00
108 109 2.362120 CGGTGGACCCTACGAGGT 60.362 66.667 0.00 0.00 45.12 3.85
109 110 2.044650 TCGGTGGACCCTACGAGG 60.045 66.667 0.00 0.00 34.30 4.63
110 111 3.510846 CTCGGTGGACCCTACGAG 58.489 66.667 13.02 13.02 45.34 4.18
111 112 0.251297 TTTCTCGGTGGACCCTACGA 60.251 55.000 0.00 2.86 0.00 3.43
112 113 0.108945 GTTTCTCGGTGGACCCTACG 60.109 60.000 0.00 0.00 0.00 3.51
113 114 0.108945 CGTTTCTCGGTGGACCCTAC 60.109 60.000 0.00 0.00 35.71 3.18
114 115 2.269978 CGTTTCTCGGTGGACCCTA 58.730 57.895 0.00 0.00 35.71 3.53
115 116 3.057337 CGTTTCTCGGTGGACCCT 58.943 61.111 0.00 0.00 35.71 4.34
124 125 2.563086 GATTGGCGTGCCGTTTCTCG 62.563 60.000 6.37 0.00 39.42 4.04
125 126 1.134694 GATTGGCGTGCCGTTTCTC 59.865 57.895 6.37 0.00 39.42 2.87
126 127 0.889186 AAGATTGGCGTGCCGTTTCT 60.889 50.000 6.37 5.41 39.42 2.52
127 128 0.039527 AAAGATTGGCGTGCCGTTTC 60.040 50.000 6.37 3.12 39.42 2.78
128 129 0.387565 AAAAGATTGGCGTGCCGTTT 59.612 45.000 6.37 0.89 39.42 3.60
129 130 0.318614 CAAAAGATTGGCGTGCCGTT 60.319 50.000 6.37 0.00 39.42 4.44
130 131 1.285641 CAAAAGATTGGCGTGCCGT 59.714 52.632 6.37 0.00 39.42 5.68
131 132 4.151417 CAAAAGATTGGCGTGCCG 57.849 55.556 6.37 0.00 39.42 5.69
139 140 3.363280 GCAAAAGCTTCGCCAAAAGATTG 60.363 43.478 0.00 0.00 35.22 2.67
140 141 2.802247 GCAAAAGCTTCGCCAAAAGATT 59.198 40.909 0.00 0.00 36.48 2.40
141 142 2.036346 AGCAAAAGCTTCGCCAAAAGAT 59.964 40.909 15.21 0.00 0.00 2.40
142 143 1.408702 AGCAAAAGCTTCGCCAAAAGA 59.591 42.857 15.21 0.00 0.00 2.52
143 144 1.788886 GAGCAAAAGCTTCGCCAAAAG 59.211 47.619 15.21 0.00 0.00 2.27
144 145 1.851658 GAGCAAAAGCTTCGCCAAAA 58.148 45.000 15.21 0.00 0.00 2.44
145 146 0.317770 CGAGCAAAAGCTTCGCCAAA 60.318 50.000 15.21 0.00 0.00 3.28
146 147 1.282570 CGAGCAAAAGCTTCGCCAA 59.717 52.632 15.21 0.00 0.00 4.52
147 148 2.945984 CGAGCAAAAGCTTCGCCA 59.054 55.556 15.21 0.00 0.00 5.69
148 149 2.502726 GCGAGCAAAAGCTTCGCC 60.503 61.111 16.91 8.32 43.03 5.54
150 151 2.176792 GGGCGAGCAAAAGCTTCG 59.823 61.111 0.00 0.00 0.00 3.79
151 152 1.081175 GTGGGCGAGCAAAAGCTTC 60.081 57.895 0.00 0.00 0.00 3.86
152 153 2.908073 CGTGGGCGAGCAAAAGCTT 61.908 57.895 0.00 0.00 41.33 3.74
153 154 3.357079 CGTGGGCGAGCAAAAGCT 61.357 61.111 0.00 0.00 41.33 3.74
155 156 4.404654 GGCGTGGGCGAGCAAAAG 62.405 66.667 0.00 0.00 41.24 2.27
156 157 4.947147 AGGCGTGGGCGAGCAAAA 62.947 61.111 0.00 0.00 41.24 2.44
157 158 4.947147 AAGGCGTGGGCGAGCAAA 62.947 61.111 0.00 0.00 41.24 3.68
180 181 2.173964 GTGTAAATTTCGCCGATGTGC 58.826 47.619 0.00 0.00 0.00 4.57
181 182 2.427169 CGTGTAAATTTCGCCGATGTG 58.573 47.619 0.00 0.00 0.00 3.21
182 183 1.395608 CCGTGTAAATTTCGCCGATGT 59.604 47.619 0.00 0.00 0.00 3.06
183 184 1.661617 TCCGTGTAAATTTCGCCGATG 59.338 47.619 0.00 0.00 0.00 3.84
184 185 2.012937 TCCGTGTAAATTTCGCCGAT 57.987 45.000 0.00 0.00 0.00 4.18
185 186 1.661617 CATCCGTGTAAATTTCGCCGA 59.338 47.619 0.00 0.00 0.00 5.54
186 187 1.267832 CCATCCGTGTAAATTTCGCCG 60.268 52.381 0.00 0.00 0.00 6.46
187 188 2.011222 TCCATCCGTGTAAATTTCGCC 58.989 47.619 0.00 0.00 0.00 5.54
188 189 2.536130 CGTCCATCCGTGTAAATTTCGC 60.536 50.000 0.00 0.00 0.00 4.70
189 190 2.536130 GCGTCCATCCGTGTAAATTTCG 60.536 50.000 0.00 0.00 0.00 3.46
190 191 2.223180 GGCGTCCATCCGTGTAAATTTC 60.223 50.000 0.00 0.00 0.00 2.17
191 192 1.741145 GGCGTCCATCCGTGTAAATTT 59.259 47.619 0.00 0.00 0.00 1.82
192 193 1.375551 GGCGTCCATCCGTGTAAATT 58.624 50.000 0.00 0.00 0.00 1.82
193 194 0.463116 GGGCGTCCATCCGTGTAAAT 60.463 55.000 0.00 0.00 0.00 1.40
194 195 1.078988 GGGCGTCCATCCGTGTAAA 60.079 57.895 0.00 0.00 0.00 2.01
195 196 2.233605 CTGGGCGTCCATCCGTGTAA 62.234 60.000 10.40 0.00 43.11 2.41
196 197 2.680707 TGGGCGTCCATCCGTGTA 60.681 61.111 3.51 0.00 38.32 2.90
197 198 4.082523 CTGGGCGTCCATCCGTGT 62.083 66.667 10.40 0.00 43.11 4.49
198 199 4.838152 CCTGGGCGTCCATCCGTG 62.838 72.222 10.40 0.00 43.11 4.94
200 201 4.530857 GACCTGGGCGTCCATCCG 62.531 72.222 10.40 2.21 43.11 4.18
201 202 4.530857 CGACCTGGGCGTCCATCC 62.531 72.222 15.33 0.04 43.11 3.51
220 221 4.489771 AGGGATTTGGCTCGCCCG 62.490 66.667 5.33 0.00 45.40 6.13
221 222 2.830370 CAGGGATTTGGCTCGCCC 60.830 66.667 5.33 0.00 41.00 6.13
222 223 2.830370 CCAGGGATTTGGCTCGCC 60.830 66.667 0.00 0.00 0.00 5.54
228 229 1.242076 GATCGATGCCAGGGATTTGG 58.758 55.000 0.54 0.00 41.35 3.28
229 230 1.242076 GGATCGATGCCAGGGATTTG 58.758 55.000 0.54 0.00 0.00 2.32
230 231 0.846015 TGGATCGATGCCAGGGATTT 59.154 50.000 14.82 0.00 0.00 2.17
231 232 0.846015 TTGGATCGATGCCAGGGATT 59.154 50.000 14.82 0.00 36.64 3.01
232 233 0.846015 TTTGGATCGATGCCAGGGAT 59.154 50.000 14.82 0.00 36.64 3.85
233 234 0.107214 GTTTGGATCGATGCCAGGGA 60.107 55.000 14.82 4.16 36.64 4.20
234 235 1.439353 CGTTTGGATCGATGCCAGGG 61.439 60.000 14.82 5.74 36.64 4.45
235 236 0.461870 TCGTTTGGATCGATGCCAGG 60.462 55.000 14.82 6.97 36.64 4.45
236 237 0.652592 GTCGTTTGGATCGATGCCAG 59.347 55.000 14.82 3.34 39.45 4.85
237 238 0.742990 GGTCGTTTGGATCGATGCCA 60.743 55.000 14.82 12.73 39.45 4.92
238 239 0.742990 TGGTCGTTTGGATCGATGCC 60.743 55.000 14.82 10.30 39.45 4.40
239 240 0.373716 GTGGTCGTTTGGATCGATGC 59.626 55.000 10.37 10.37 39.45 3.91
240 241 1.006832 GGTGGTCGTTTGGATCGATG 58.993 55.000 0.54 0.00 39.45 3.84
241 242 0.611200 TGGTGGTCGTTTGGATCGAT 59.389 50.000 0.00 0.00 39.45 3.59
242 243 0.393448 TTGGTGGTCGTTTGGATCGA 59.607 50.000 0.00 0.00 34.91 3.59
243 244 1.231221 TTTGGTGGTCGTTTGGATCG 58.769 50.000 0.00 0.00 0.00 3.69
244 245 3.081804 AGATTTGGTGGTCGTTTGGATC 58.918 45.455 0.00 0.00 0.00 3.36
245 246 3.081804 GAGATTTGGTGGTCGTTTGGAT 58.918 45.455 0.00 0.00 0.00 3.41
246 247 2.158740 TGAGATTTGGTGGTCGTTTGGA 60.159 45.455 0.00 0.00 0.00 3.53
247 248 2.226330 TGAGATTTGGTGGTCGTTTGG 58.774 47.619 0.00 0.00 0.00 3.28
248 249 3.366273 CCATGAGATTTGGTGGTCGTTTG 60.366 47.826 0.00 0.00 0.00 2.93
249 250 2.819608 CCATGAGATTTGGTGGTCGTTT 59.180 45.455 0.00 0.00 0.00 3.60
250 251 2.436417 CCATGAGATTTGGTGGTCGTT 58.564 47.619 0.00 0.00 0.00 3.85
251 252 1.340017 CCCATGAGATTTGGTGGTCGT 60.340 52.381 0.00 0.00 31.99 4.34
252 253 1.382522 CCCATGAGATTTGGTGGTCG 58.617 55.000 0.00 0.00 31.99 4.79
253 254 1.106285 GCCCATGAGATTTGGTGGTC 58.894 55.000 0.00 0.00 31.99 4.02
254 255 0.706433 AGCCCATGAGATTTGGTGGT 59.294 50.000 0.00 0.00 31.99 4.16
255 256 2.579873 CTAGCCCATGAGATTTGGTGG 58.420 52.381 0.00 0.00 31.99 4.61
256 257 1.952296 GCTAGCCCATGAGATTTGGTG 59.048 52.381 2.29 0.00 31.99 4.17
257 258 1.133668 GGCTAGCCCATGAGATTTGGT 60.134 52.381 24.19 0.00 31.99 3.67
258 259 1.133699 TGGCTAGCCCATGAGATTTGG 60.134 52.381 30.81 0.00 39.18 3.28
259 260 2.353357 TGGCTAGCCCATGAGATTTG 57.647 50.000 30.81 0.00 39.18 2.32
260 261 3.386932 TTTGGCTAGCCCATGAGATTT 57.613 42.857 30.81 0.00 44.89 2.17
261 262 3.386932 TTTTGGCTAGCCCATGAGATT 57.613 42.857 30.81 0.00 44.89 2.40
262 263 3.607490 ATTTTGGCTAGCCCATGAGAT 57.393 42.857 30.81 12.89 44.89 2.75
263 264 3.386932 AATTTTGGCTAGCCCATGAGA 57.613 42.857 30.81 8.34 44.89 3.27
264 265 4.186159 CAAAATTTTGGCTAGCCCATGAG 58.814 43.478 30.81 9.43 44.89 2.90
265 266 4.205065 CAAAATTTTGGCTAGCCCATGA 57.795 40.909 30.81 14.38 44.89 3.07
277 278 2.765122 ACCGACCATGCCAAAATTTTG 58.235 42.857 21.65 21.65 37.90 2.44
278 279 3.483808 AACCGACCATGCCAAAATTTT 57.516 38.095 0.00 0.00 0.00 1.82
279 280 3.483808 AAACCGACCATGCCAAAATTT 57.516 38.095 0.00 0.00 0.00 1.82
280 281 3.137533 CAAAACCGACCATGCCAAAATT 58.862 40.909 0.00 0.00 0.00 1.82
281 282 2.549778 CCAAAACCGACCATGCCAAAAT 60.550 45.455 0.00 0.00 0.00 1.82
282 283 1.202580 CCAAAACCGACCATGCCAAAA 60.203 47.619 0.00 0.00 0.00 2.44
283 284 0.390860 CCAAAACCGACCATGCCAAA 59.609 50.000 0.00 0.00 0.00 3.28
284 285 0.757188 ACCAAAACCGACCATGCCAA 60.757 50.000 0.00 0.00 0.00 4.52
285 286 0.110678 TACCAAAACCGACCATGCCA 59.889 50.000 0.00 0.00 0.00 4.92
286 287 0.808755 CTACCAAAACCGACCATGCC 59.191 55.000 0.00 0.00 0.00 4.40
287 288 1.530323 ACTACCAAAACCGACCATGC 58.470 50.000 0.00 0.00 0.00 4.06
288 289 5.413213 TGAATTACTACCAAAACCGACCATG 59.587 40.000 0.00 0.00 0.00 3.66
289 290 5.562635 TGAATTACTACCAAAACCGACCAT 58.437 37.500 0.00 0.00 0.00 3.55
290 291 4.970711 TGAATTACTACCAAAACCGACCA 58.029 39.130 0.00 0.00 0.00 4.02
291 292 5.945466 TTGAATTACTACCAAAACCGACC 57.055 39.130 0.00 0.00 0.00 4.79
292 293 6.727215 TGTTTGAATTACTACCAAAACCGAC 58.273 36.000 0.00 0.00 32.44 4.79
293 294 6.513720 GCTGTTTGAATTACTACCAAAACCGA 60.514 38.462 0.00 0.00 32.44 4.69
294 295 5.627780 GCTGTTTGAATTACTACCAAAACCG 59.372 40.000 0.00 0.00 32.44 4.44
295 296 5.924254 GGCTGTTTGAATTACTACCAAAACC 59.076 40.000 0.00 0.00 32.44 3.27
296 297 5.924254 GGGCTGTTTGAATTACTACCAAAAC 59.076 40.000 0.00 0.00 32.44 2.43
297 298 5.011227 GGGGCTGTTTGAATTACTACCAAAA 59.989 40.000 0.00 0.00 32.44 2.44
298 299 4.525100 GGGGCTGTTTGAATTACTACCAAA 59.475 41.667 0.00 0.00 0.00 3.28
299 300 4.083565 GGGGCTGTTTGAATTACTACCAA 58.916 43.478 0.00 0.00 0.00 3.67
300 301 3.692690 GGGGCTGTTTGAATTACTACCA 58.307 45.455 0.00 0.00 0.00 3.25
301 302 2.681344 CGGGGCTGTTTGAATTACTACC 59.319 50.000 0.00 0.00 0.00 3.18
302 303 3.340928 ACGGGGCTGTTTGAATTACTAC 58.659 45.455 0.00 0.00 0.00 2.73
303 304 3.706600 ACGGGGCTGTTTGAATTACTA 57.293 42.857 0.00 0.00 0.00 1.82
304 305 2.579410 ACGGGGCTGTTTGAATTACT 57.421 45.000 0.00 0.00 0.00 2.24
305 306 4.396790 TGATAACGGGGCTGTTTGAATTAC 59.603 41.667 1.31 0.00 33.32 1.89
306 307 4.396790 GTGATAACGGGGCTGTTTGAATTA 59.603 41.667 1.31 0.00 33.32 1.40
307 308 3.192633 GTGATAACGGGGCTGTTTGAATT 59.807 43.478 1.31 0.00 33.32 2.17
308 309 2.752903 GTGATAACGGGGCTGTTTGAAT 59.247 45.455 1.31 0.00 33.32 2.57
309 310 2.156098 GTGATAACGGGGCTGTTTGAA 58.844 47.619 1.31 0.00 33.32 2.69
310 311 1.349688 AGTGATAACGGGGCTGTTTGA 59.650 47.619 1.31 0.00 33.32 2.69
311 312 1.821216 AGTGATAACGGGGCTGTTTG 58.179 50.000 1.31 0.00 33.32 2.93
312 313 2.579410 AAGTGATAACGGGGCTGTTT 57.421 45.000 1.31 0.00 33.32 2.83
313 314 2.579410 AAAGTGATAACGGGGCTGTT 57.421 45.000 0.00 0.00 35.86 3.16
314 315 3.706600 TTAAAGTGATAACGGGGCTGT 57.293 42.857 0.00 0.00 0.00 4.40
315 316 5.576447 AATTTAAAGTGATAACGGGGCTG 57.424 39.130 0.00 0.00 0.00 4.85
316 317 6.888088 ACTAAATTTAAAGTGATAACGGGGCT 59.112 34.615 0.00 0.00 0.00 5.19
317 318 7.092137 ACTAAATTTAAAGTGATAACGGGGC 57.908 36.000 0.00 0.00 0.00 5.80
318 319 9.563898 GAAACTAAATTTAAAGTGATAACGGGG 57.436 33.333 0.00 0.00 0.00 5.73
386 387 5.335897 CCCGACACATTTGACAAAATCATCT 60.336 40.000 4.41 0.00 37.11 2.90
391 392 3.304391 CGACCCGACACATTTGACAAAAT 60.304 43.478 4.41 0.00 36.39 1.82
419 420 2.102357 CGTCCTCCGGTCATCACG 59.898 66.667 0.00 0.31 0.00 4.35
421 422 2.050350 GGTCGTCCTCCGGTCATCA 61.050 63.158 0.00 0.00 37.11 3.07
460 461 3.605743 ATTCGTTTGCGTCGGTAAAAA 57.394 38.095 0.00 0.00 39.49 1.94
468 469 3.737266 TCCGGATTATATTCGTTTGCGTC 59.263 43.478 0.00 0.00 39.49 5.19
469 470 3.492011 GTCCGGATTATATTCGTTTGCGT 59.508 43.478 7.81 0.00 39.49 5.24
503 504 1.816224 CCAACTCCCAACGGTAAATGG 59.184 52.381 0.00 0.00 36.42 3.16
514 515 2.409064 TAGACCAACTCCAACTCCCA 57.591 50.000 0.00 0.00 0.00 4.37
518 519 2.972713 TGCTCTTAGACCAACTCCAACT 59.027 45.455 0.00 0.00 0.00 3.16
528 529 4.826556 ACTGTTGAAGATGCTCTTAGACC 58.173 43.478 0.00 0.00 36.73 3.85
529 530 4.560819 CGACTGTTGAAGATGCTCTTAGAC 59.439 45.833 0.00 2.84 36.73 2.59
530 531 4.738124 CGACTGTTGAAGATGCTCTTAGA 58.262 43.478 0.00 0.00 36.73 2.10
531 532 3.305629 GCGACTGTTGAAGATGCTCTTAG 59.694 47.826 0.00 0.00 36.73 2.18
533 534 2.072298 GCGACTGTTGAAGATGCTCTT 58.928 47.619 0.00 0.00 39.87 2.85
534 535 1.274728 AGCGACTGTTGAAGATGCTCT 59.725 47.619 0.00 0.00 35.83 4.09
535 536 1.658095 GAGCGACTGTTGAAGATGCTC 59.342 52.381 0.00 0.00 43.82 4.26
537 538 1.432514 TGAGCGACTGTTGAAGATGC 58.567 50.000 0.00 0.00 0.00 3.91
557 558 1.081242 CAGCGCGTCAGGCATTTTT 60.081 52.632 8.43 0.00 43.84 1.94
558 559 1.514678 TTCAGCGCGTCAGGCATTTT 61.515 50.000 8.43 0.00 43.84 1.82
559 560 1.514678 TTTCAGCGCGTCAGGCATTT 61.515 50.000 8.43 0.00 43.84 2.32
560 561 1.514678 TTTTCAGCGCGTCAGGCATT 61.515 50.000 8.43 0.00 43.84 3.56
563 564 2.127232 GTTTTCAGCGCGTCAGGC 60.127 61.111 8.43 0.00 38.69 4.85
565 566 0.179215 GATGGTTTTCAGCGCGTCAG 60.179 55.000 8.43 0.00 0.00 3.51
567 568 4.745549 GATGGTTTTCAGCGCGTC 57.254 55.556 8.43 0.00 0.00 5.19
578 579 1.535015 CGGCACACAAAAACGATGGTT 60.535 47.619 0.00 0.00 38.22 3.67
579 580 0.030101 CGGCACACAAAAACGATGGT 59.970 50.000 0.00 0.00 0.00 3.55
581 582 0.309302 TCCGGCACACAAAAACGATG 59.691 50.000 0.00 0.00 0.00 3.84
582 583 0.591170 CTCCGGCACACAAAAACGAT 59.409 50.000 0.00 0.00 0.00 3.73
583 584 0.462225 TCTCCGGCACACAAAAACGA 60.462 50.000 0.00 0.00 0.00 3.85
584 585 0.316689 GTCTCCGGCACACAAAAACG 60.317 55.000 0.00 0.00 0.00 3.60
585 586 0.736053 TGTCTCCGGCACACAAAAAC 59.264 50.000 0.00 0.00 0.00 2.43
587 588 1.464734 TTTGTCTCCGGCACACAAAA 58.535 45.000 17.88 4.57 37.14 2.44
589 590 1.464734 TTTTTGTCTCCGGCACACAA 58.535 45.000 5.61 7.02 0.00 3.33
590 591 3.176728 TTTTTGTCTCCGGCACACA 57.823 47.368 5.61 0.99 0.00 3.72
606 607 1.024271 TTCTGCTGAAGCGCTGTTTT 58.976 45.000 12.58 0.00 45.83 2.43
607 608 1.024271 TTTCTGCTGAAGCGCTGTTT 58.976 45.000 12.58 0.00 45.83 2.83
610 714 0.110328 CAGTTTCTGCTGAAGCGCTG 60.110 55.000 12.58 14.11 45.83 5.18
616 720 6.936900 AGCTCTATTTTACAGTTTCTGCTGAA 59.063 34.615 1.33 1.33 39.62 3.02
619 723 5.578727 CGAGCTCTATTTTACAGTTTCTGCT 59.421 40.000 12.85 0.00 34.37 4.24
620 724 5.725316 GCGAGCTCTATTTTACAGTTTCTGC 60.725 44.000 12.85 0.00 34.37 4.26
622 726 5.479306 TGCGAGCTCTATTTTACAGTTTCT 58.521 37.500 12.85 0.00 0.00 2.52
623 727 5.779806 TGCGAGCTCTATTTTACAGTTTC 57.220 39.130 12.85 0.00 0.00 2.78
676 780 3.193479 CCAAAGTTTGAAGCCTGGGATAC 59.807 47.826 17.33 0.00 0.00 2.24
677 781 3.430453 CCAAAGTTTGAAGCCTGGGATA 58.570 45.455 17.33 0.00 0.00 2.59
678 782 2.250924 CCAAAGTTTGAAGCCTGGGAT 58.749 47.619 17.33 0.00 0.00 3.85
679 783 1.703411 CCAAAGTTTGAAGCCTGGGA 58.297 50.000 17.33 0.00 0.00 4.37
680 784 0.681175 CCCAAAGTTTGAAGCCTGGG 59.319 55.000 17.33 4.64 37.74 4.45
682 786 0.318955 CGCCCAAAGTTTGAAGCCTG 60.319 55.000 17.33 4.54 0.00 4.85
684 788 1.664649 GCGCCCAAAGTTTGAAGCC 60.665 57.895 17.33 9.41 0.00 4.35
685 789 1.664649 GGCGCCCAAAGTTTGAAGC 60.665 57.895 18.11 16.75 0.00 3.86
687 791 2.725008 CGGCGCCCAAAGTTTGAA 59.275 55.556 23.46 0.00 0.00 2.69
689 793 2.153547 AATCCGGCGCCCAAAGTTTG 62.154 55.000 23.46 8.73 0.00 2.93
690 794 1.906333 AATCCGGCGCCCAAAGTTT 60.906 52.632 23.46 5.91 0.00 2.66
694 798 3.369400 CACAATCCGGCGCCCAAA 61.369 61.111 23.46 6.70 0.00 3.28
701 805 4.465512 CAGCGTGCACAATCCGGC 62.466 66.667 18.64 10.86 0.00 6.13
702 806 1.295357 TTACAGCGTGCACAATCCGG 61.295 55.000 18.64 0.00 0.00 5.14
703 807 0.515127 TTTACAGCGTGCACAATCCG 59.485 50.000 18.64 3.11 0.00 4.18
704 808 2.697431 TTTTACAGCGTGCACAATCC 57.303 45.000 18.64 1.57 0.00 3.01
705 809 3.171277 GGATTTTACAGCGTGCACAATC 58.829 45.455 18.64 15.17 0.00 2.67
706 810 2.414029 CGGATTTTACAGCGTGCACAAT 60.414 45.455 18.64 6.84 0.00 2.71
707 811 1.069568 CGGATTTTACAGCGTGCACAA 60.070 47.619 18.64 1.41 0.00 3.33
708 812 0.515127 CGGATTTTACAGCGTGCACA 59.485 50.000 18.64 0.00 0.00 4.57
709 813 0.179200 CCGGATTTTACAGCGTGCAC 60.179 55.000 6.82 6.82 0.00 4.57
710 814 1.302383 CCCGGATTTTACAGCGTGCA 61.302 55.000 0.73 0.00 0.00 4.57
711 815 1.427819 CCCGGATTTTACAGCGTGC 59.572 57.895 0.73 0.00 0.00 5.34
712 816 1.024579 AGCCCGGATTTTACAGCGTG 61.025 55.000 0.73 0.00 0.00 5.34
713 817 0.743345 GAGCCCGGATTTTACAGCGT 60.743 55.000 0.73 0.00 0.00 5.07
714 818 1.762222 CGAGCCCGGATTTTACAGCG 61.762 60.000 0.73 0.00 0.00 5.18
715 819 0.743345 ACGAGCCCGGATTTTACAGC 60.743 55.000 0.73 0.00 40.78 4.40
716 820 1.006832 CACGAGCCCGGATTTTACAG 58.993 55.000 0.73 0.00 40.78 2.74
717 821 1.022451 GCACGAGCCCGGATTTTACA 61.022 55.000 0.73 0.00 40.78 2.41
718 822 1.022451 TGCACGAGCCCGGATTTTAC 61.022 55.000 0.73 0.00 41.13 2.01
719 823 0.321741 TTGCACGAGCCCGGATTTTA 60.322 50.000 0.73 0.00 41.13 1.52
720 824 1.586154 CTTGCACGAGCCCGGATTTT 61.586 55.000 0.73 0.00 41.13 1.82
721 825 2.033448 TTGCACGAGCCCGGATTT 59.967 55.556 0.73 0.00 41.13 2.17
722 826 1.895020 TACTTGCACGAGCCCGGATT 61.895 55.000 0.73 0.00 41.13 3.01
723 827 2.298158 CTACTTGCACGAGCCCGGAT 62.298 60.000 0.73 0.00 41.13 4.18
724 828 2.992689 TACTTGCACGAGCCCGGA 60.993 61.111 0.73 0.00 41.13 5.14
725 829 2.509336 CTACTTGCACGAGCCCGG 60.509 66.667 1.39 0.00 41.13 5.73
727 831 2.125106 CCCTACTTGCACGAGCCC 60.125 66.667 1.39 0.00 41.13 5.19
730 834 3.188786 GCGCCCTACTTGCACGAG 61.189 66.667 0.00 0.00 0.00 4.18
735 839 4.547367 ATCCGGCGCCCTACTTGC 62.547 66.667 23.46 0.00 0.00 4.01
737 841 2.189521 CAATCCGGCGCCCTACTT 59.810 61.111 23.46 6.61 0.00 2.24
738 842 3.861797 CCAATCCGGCGCCCTACT 61.862 66.667 23.46 0.00 0.00 2.57
748 852 2.141122 AAAACACTGCGCCCAATCCG 62.141 55.000 4.18 0.00 0.00 4.18
752 856 0.459237 CACAAAAACACTGCGCCCAA 60.459 50.000 4.18 0.00 0.00 4.12
754 858 2.237066 GCACAAAAACACTGCGCCC 61.237 57.895 4.18 0.00 0.00 6.13
758 862 2.538437 TCACATGCACAAAAACACTGC 58.462 42.857 0.00 0.00 0.00 4.40
761 865 5.925907 AGTTTTTCACATGCACAAAAACAC 58.074 33.333 26.24 13.18 45.93 3.32
762 866 6.426328 AGAAGTTTTTCACATGCACAAAAACA 59.574 30.769 26.24 4.83 45.93 2.83
766 870 5.288232 CGAAGAAGTTTTTCACATGCACAAA 59.712 36.000 6.91 0.00 35.70 2.83
767 871 4.797868 CGAAGAAGTTTTTCACATGCACAA 59.202 37.500 6.91 0.00 35.70 3.33
768 872 4.142491 ACGAAGAAGTTTTTCACATGCACA 60.142 37.500 6.91 0.00 35.70 4.57
769 873 4.351192 ACGAAGAAGTTTTTCACATGCAC 58.649 39.130 6.91 0.00 35.70 4.57
770 874 4.597079 GACGAAGAAGTTTTTCACATGCA 58.403 39.130 6.91 0.00 35.70 3.96
771 875 3.659444 CGACGAAGAAGTTTTTCACATGC 59.341 43.478 6.91 0.00 35.70 4.06
772 876 3.659444 GCGACGAAGAAGTTTTTCACATG 59.341 43.478 0.00 0.00 35.70 3.21
773 877 3.560068 AGCGACGAAGAAGTTTTTCACAT 59.440 39.130 0.00 0.00 35.70 3.21
774 878 2.933906 AGCGACGAAGAAGTTTTTCACA 59.066 40.909 0.00 0.00 35.70 3.58
775 879 3.532950 GAGCGACGAAGAAGTTTTTCAC 58.467 45.455 0.00 0.08 35.70 3.18
776 880 2.542595 GGAGCGACGAAGAAGTTTTTCA 59.457 45.455 0.00 0.00 35.70 2.69
777 881 2.096367 GGGAGCGACGAAGAAGTTTTTC 60.096 50.000 0.00 0.00 0.00 2.29
778 882 1.871676 GGGAGCGACGAAGAAGTTTTT 59.128 47.619 0.00 0.00 0.00 1.94
779 883 1.509703 GGGAGCGACGAAGAAGTTTT 58.490 50.000 0.00 0.00 0.00 2.43
780 884 0.666577 CGGGAGCGACGAAGAAGTTT 60.667 55.000 0.00 0.00 0.00 2.66
781 885 1.080705 CGGGAGCGACGAAGAAGTT 60.081 57.895 0.00 0.00 0.00 2.66
782 886 2.567049 CGGGAGCGACGAAGAAGT 59.433 61.111 0.00 0.00 0.00 3.01
815 919 9.757859 CGGTATAATTCTTTTACAGCGTTAAAA 57.242 29.630 5.69 5.69 0.00 1.52
816 920 7.904461 GCGGTATAATTCTTTTACAGCGTTAAA 59.096 33.333 0.00 0.00 29.84 1.52
817 921 7.401080 GCGGTATAATTCTTTTACAGCGTTAA 58.599 34.615 0.00 0.00 29.84 2.01
818 922 6.936374 GCGGTATAATTCTTTTACAGCGTTA 58.064 36.000 0.00 0.00 29.84 3.18
819 923 5.803118 GCGGTATAATTCTTTTACAGCGTT 58.197 37.500 0.00 0.00 29.84 4.84
820 924 5.399604 GCGGTATAATTCTTTTACAGCGT 57.600 39.130 0.00 0.00 29.84 5.07
822 926 4.209112 GCGCGGTATAATTCTTTTACAGC 58.791 43.478 8.83 0.00 34.87 4.40
823 927 4.607557 CGGCGCGGTATAATTCTTTTACAG 60.608 45.833 8.83 0.00 0.00 2.74
824 928 3.245754 CGGCGCGGTATAATTCTTTTACA 59.754 43.478 8.83 0.00 0.00 2.41
825 929 3.490526 TCGGCGCGGTATAATTCTTTTAC 59.509 43.478 15.06 0.00 0.00 2.01
826 930 3.715495 TCGGCGCGGTATAATTCTTTTA 58.285 40.909 15.06 0.00 0.00 1.52
827 931 2.542595 CTCGGCGCGGTATAATTCTTTT 59.457 45.455 15.06 0.00 0.00 2.27
828 932 2.132762 CTCGGCGCGGTATAATTCTTT 58.867 47.619 15.06 0.00 0.00 2.52
829 933 1.338973 TCTCGGCGCGGTATAATTCTT 59.661 47.619 15.06 0.00 0.00 2.52
830 934 0.956633 TCTCGGCGCGGTATAATTCT 59.043 50.000 15.06 0.00 0.00 2.40
831 935 1.058404 GTCTCGGCGCGGTATAATTC 58.942 55.000 15.06 0.00 0.00 2.17
832 936 0.662374 CGTCTCGGCGCGGTATAATT 60.662 55.000 15.06 0.00 0.00 1.40
833 937 1.081641 CGTCTCGGCGCGGTATAAT 60.082 57.895 15.06 0.00 0.00 1.28
834 938 1.713937 TTCGTCTCGGCGCGGTATAA 61.714 55.000 15.06 1.55 0.00 0.98
835 939 1.713937 TTTCGTCTCGGCGCGGTATA 61.714 55.000 15.06 0.00 0.00 1.47
836 940 3.055080 TTTCGTCTCGGCGCGGTAT 62.055 57.895 15.06 0.00 0.00 2.73
837 941 3.736100 TTTCGTCTCGGCGCGGTA 61.736 61.111 15.06 1.82 0.00 4.02
844 948 3.179265 ATGCGCGTTTCGTCTCGG 61.179 61.111 8.43 0.00 41.07 4.63
845 949 2.018670 CATGCGCGTTTCGTCTCG 59.981 61.111 8.43 0.00 41.07 4.04
846 950 0.110823 AAACATGCGCGTTTCGTCTC 60.111 50.000 8.43 0.00 41.07 3.36
847 951 0.384230 CAAACATGCGCGTTTCGTCT 60.384 50.000 8.43 0.00 36.98 4.18
848 952 1.327292 CCAAACATGCGCGTTTCGTC 61.327 55.000 8.43 0.00 36.98 4.20
849 953 1.369930 CCAAACATGCGCGTTTCGT 60.370 52.632 8.43 0.00 36.98 3.85
850 954 1.059657 CTCCAAACATGCGCGTTTCG 61.060 55.000 8.43 5.06 36.98 3.46
851 955 0.237235 TCTCCAAACATGCGCGTTTC 59.763 50.000 8.43 0.00 36.98 2.78
852 956 0.881118 ATCTCCAAACATGCGCGTTT 59.119 45.000 8.43 3.05 39.67 3.60
853 957 0.168788 CATCTCCAAACATGCGCGTT 59.831 50.000 8.43 0.00 0.00 4.84
854 958 1.796151 CATCTCCAAACATGCGCGT 59.204 52.632 8.43 0.00 0.00 6.01
855 959 1.584483 GCATCTCCAAACATGCGCG 60.584 57.895 0.00 0.00 36.33 6.86
856 960 4.389772 GCATCTCCAAACATGCGC 57.610 55.556 0.00 0.00 36.33 6.09
869 973 0.467384 TCCTGCTGCCTTAGAGCATC 59.533 55.000 0.00 0.00 45.27 3.91
870 974 0.179936 GTCCTGCTGCCTTAGAGCAT 59.820 55.000 0.00 0.00 45.27 3.79
871 975 1.599047 GTCCTGCTGCCTTAGAGCA 59.401 57.895 0.00 0.00 44.22 4.26
872 976 1.153269 GGTCCTGCTGCCTTAGAGC 60.153 63.158 0.00 0.00 36.95 4.09
873 977 0.177604 CTGGTCCTGCTGCCTTAGAG 59.822 60.000 0.00 0.00 0.00 2.43
874 978 0.545309 ACTGGTCCTGCTGCCTTAGA 60.545 55.000 0.00 0.00 0.00 2.10
875 979 0.326264 AACTGGTCCTGCTGCCTTAG 59.674 55.000 0.00 0.00 0.00 2.18
876 980 0.324943 GAACTGGTCCTGCTGCCTTA 59.675 55.000 0.00 0.00 0.00 2.69
877 981 1.073897 GAACTGGTCCTGCTGCCTT 59.926 57.895 0.00 0.00 0.00 4.35
878 982 2.753029 GAACTGGTCCTGCTGCCT 59.247 61.111 0.00 0.00 0.00 4.75
930 1034 4.096311 CAAGAAATCGCTCAGCAATGAAG 58.904 43.478 0.00 0.00 0.00 3.02
935 1039 3.671433 GCAATCAAGAAATCGCTCAGCAA 60.671 43.478 0.00 0.00 0.00 3.91
946 1050 5.441718 AGAGGGATGTAGCAATCAAGAAA 57.558 39.130 0.00 0.00 0.00 2.52
949 1053 5.304101 AGAGTAGAGGGATGTAGCAATCAAG 59.696 44.000 0.00 0.00 0.00 3.02
963 1067 0.741915 GCTTCACCGAGAGTAGAGGG 59.258 60.000 0.00 0.00 0.00 4.30
1049 1154 1.144565 CGAGGATGTGAGAAGCAGCG 61.145 60.000 0.00 0.00 0.00 5.18
1155 1272 1.176619 TGTTGGCGACGGAGAAGAGA 61.177 55.000 0.00 0.00 0.00 3.10
1318 1435 4.640201 CCAGATGGTTTCATTATCGTTGGT 59.360 41.667 0.00 0.00 32.98 3.67
2388 2549 6.318900 TCTCTGCGTAAGATCAATGACTTAGA 59.681 38.462 0.00 2.63 43.02 2.10
2402 2563 4.224715 TCCATACGAATCTCTGCGTAAG 57.775 45.455 0.00 0.00 44.80 2.34
2550 2712 2.560542 CCATCCTTCTCCTACCTCATCG 59.439 54.545 0.00 0.00 0.00 3.84
2612 2776 6.660887 AAGTTGTGCCATTTTTGTAACTTG 57.339 33.333 0.00 0.00 36.06 3.16
2613 2777 8.956533 AATAAGTTGTGCCATTTTTGTAACTT 57.043 26.923 0.00 0.00 39.41 2.66
3159 4038 4.178540 GCAATGCAAATGCTGTTATCACT 58.821 39.130 17.78 0.00 42.66 3.41
3376 4302 1.671979 TTCGAGATGGTACGTCGGAT 58.328 50.000 0.00 0.00 34.43 4.18
4054 7276 1.774254 TCCGATATCTTGGCCACCATT 59.226 47.619 3.88 0.00 31.53 3.16
4112 7334 4.583871 ACAATCCTTTCTGTGACCTGATC 58.416 43.478 0.00 0.00 0.00 2.92
4517 8052 4.126437 GGTTCAAACAAATTGGTTGGGAG 58.874 43.478 21.86 0.00 44.78 4.30
4914 8451 3.910989 TCCATCCTATCGTCCTTCAAGA 58.089 45.455 0.00 0.00 0.00 3.02
4954 8491 7.033791 GTCATCAGTAACGTCTCCAATCTTTA 58.966 38.462 0.00 0.00 0.00 1.85
5005 8542 1.142531 TTTTTGGCGTGCATGCACA 59.857 47.368 40.95 25.19 46.47 4.57
5302 8969 9.903682 AGAATATCACAAAAGTTTCATCTGTTG 57.096 29.630 0.00 0.00 38.29 3.33
5393 9061 1.001888 TCTACCATGGGCCGGTGTA 59.998 57.895 18.09 6.09 37.33 2.90
5502 9180 6.202954 GCATACATGCGGTAGTTTAGATCTTT 59.797 38.462 0.00 0.00 44.67 2.52
5545 9228 1.621814 TGTTATATGGAGTAGGGGCGC 59.378 52.381 0.00 0.00 0.00 6.53
5589 9272 1.269998 GACTAGGCGGATGCGTCTTAT 59.730 52.381 21.42 7.96 44.10 1.73
5598 9281 1.068083 CATGTGCGACTAGGCGGAT 59.932 57.895 21.78 0.00 33.30 4.18
5622 9305 3.052566 TGAGATTGGAAGAGGAGGCTCTA 60.053 47.826 15.23 0.00 32.66 2.43
5655 9338 3.702045 AGACTAGCGCTACTGGATTTCTT 59.298 43.478 14.45 0.00 0.00 2.52
5675 9361 1.330655 GGCGGAGGAAGACATGGAGA 61.331 60.000 0.00 0.00 0.00 3.71
5803 9489 0.469494 ATGGTGCCATCGACATAGCA 59.531 50.000 0.00 0.00 29.42 3.49
5827 9513 0.251341 ACAAGAAGGGGCGCTGATTT 60.251 50.000 7.64 0.00 0.00 2.17
5830 9516 2.347490 GACAAGAAGGGGCGCTGA 59.653 61.111 7.64 0.00 0.00 4.26
5906 9592 3.406200 CCTGCTGGTCCTCCCTGG 61.406 72.222 0.51 0.00 32.93 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.