Multiple sequence alignment - TraesCS4A01G281200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G281200 chr4A 100.000 5432 0 0 1 5432 589493063 589498494 0.000000e+00 10032.0
1 TraesCS4A01G281200 chr4A 91.667 84 4 3 367 449 700425501 700425582 4.450000e-21 113.0
2 TraesCS4A01G281200 chr4A 88.312 77 9 0 4796 4872 61025530 61025454 5.790000e-15 93.5
3 TraesCS4A01G281200 chr4A 83.696 92 12 2 4789 4880 67987357 67987445 3.490000e-12 84.2
4 TraesCS4A01G281200 chr4A 86.538 52 5 2 4740 4790 702637666 702637716 7.600000e-04 56.5
5 TraesCS4A01G281200 chr4D 96.492 4305 105 15 367 4642 13040489 13044776 0.000000e+00 7071.0
6 TraesCS4A01G281200 chr4D 82.692 260 31 10 4475 4730 13044894 13045143 9.160000e-53 219.0
7 TraesCS4A01G281200 chr4D 98.529 68 1 0 5048 5115 13055964 13056031 2.660000e-23 121.0
8 TraesCS4A01G281200 chr4D 81.553 103 13 6 4780 4879 358957885 358957786 4.510000e-11 80.5
9 TraesCS4A01G281200 chr4B 94.226 3637 155 20 906 4526 23656980 23660577 0.000000e+00 5502.0
10 TraesCS4A01G281200 chr4B 88.889 459 43 3 456 908 23656494 23656950 4.750000e-155 558.0
11 TraesCS4A01G281200 chr4B 94.007 267 8 5 4858 5117 23660855 23661120 1.100000e-106 398.0
12 TraesCS4A01G281200 chr4B 90.942 276 15 8 5116 5385 299556250 299555979 4.000000e-96 363.0
13 TraesCS4A01G281200 chr4B 89.286 168 12 2 4564 4729 23660583 23660746 7.130000e-49 206.0
14 TraesCS4A01G281200 chr4B 82.902 193 19 6 6 184 23656100 23656292 1.570000e-35 161.0
15 TraesCS4A01G281200 chr4B 81.553 103 13 6 4780 4879 29302223 29302322 4.510000e-11 80.5
16 TraesCS4A01G281200 chr4B 81.553 103 13 6 4780 4879 207516062 207516161 4.510000e-11 80.5
17 TraesCS4A01G281200 chr4B 100.000 29 0 0 4762 4790 487703082 487703054 3.000000e-03 54.7
18 TraesCS4A01G281200 chr2B 90.493 284 15 10 5116 5391 16197490 16197769 1.110000e-96 364.0
19 TraesCS4A01G281200 chr2B 100.000 29 0 0 4762 4790 257451741 257451713 3.000000e-03 54.7
20 TraesCS4A01G281200 chr7A 89.855 276 19 7 5116 5385 7705729 7705457 4.030000e-91 346.0
21 TraesCS4A01G281200 chr7A 91.743 109 9 0 167 275 299503429 299503537 9.420000e-33 152.0
22 TraesCS4A01G281200 chr7A 88.889 81 8 1 369 449 33028319 33028240 1.250000e-16 99.0
23 TraesCS4A01G281200 chr3B 88.581 289 19 11 5110 5387 726745186 726745471 6.740000e-89 339.0
24 TraesCS4A01G281200 chr2D 89.247 279 19 7 5116 5385 56256638 56256362 6.740000e-89 339.0
25 TraesCS4A01G281200 chr2D 88.333 60 5 2 4742 4800 192181586 192181528 2.710000e-08 71.3
26 TraesCS4A01G281200 chr2A 89.324 281 15 12 5114 5385 200213970 200214244 6.740000e-89 339.0
27 TraesCS4A01G281200 chr2A 87.654 81 6 4 4795 4873 623071257 623071335 2.080000e-14 91.6
28 TraesCS4A01G281200 chr2A 82.927 82 11 3 369 449 612841555 612841634 2.710000e-08 71.3
29 TraesCS4A01G281200 chr2A 86.667 60 1 6 4741 4797 469789680 469789735 5.880000e-05 60.2
30 TraesCS4A01G281200 chr1B 89.455 275 20 6 5116 5385 70240028 70239758 6.740000e-89 339.0
31 TraesCS4A01G281200 chr1B 89.831 118 7 2 163 275 646469109 646468992 4.380000e-31 147.0
32 TraesCS4A01G281200 chr1B 86.420 81 11 0 4795 4875 685093532 685093612 7.490000e-14 89.8
33 TraesCS4A01G281200 chr1D 89.416 274 19 7 5115 5383 58983389 58983121 2.420000e-88 337.0
34 TraesCS4A01G281200 chr7B 89.091 275 21 6 5116 5385 418045024 418044754 3.140000e-87 333.0
35 TraesCS4A01G281200 chr7B 85.882 85 10 1 4789 4873 736300472 736300554 7.490000e-14 89.8
36 TraesCS4A01G281200 chr7D 87.059 85 10 1 4791 4874 503994720 503994636 1.610000e-15 95.3
37 TraesCS4A01G281200 chr5B 87.952 83 7 2 367 449 572137895 572137816 1.610000e-15 95.3
38 TraesCS4A01G281200 chr3A 91.837 49 4 0 390 438 646576429 646576381 9.760000e-08 69.4
39 TraesCS4A01G281200 chr3A 100.000 29 0 0 4762 4790 346780796 346780824 3.000000e-03 54.7
40 TraesCS4A01G281200 chr6D 100.000 29 0 0 4762 4790 56969906 56969934 3.000000e-03 54.7
41 TraesCS4A01G281200 chr5D 100.000 29 0 0 4762 4790 305076932 305076960 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G281200 chr4A 589493063 589498494 5431 False 10032 10032 100.000 1 5432 1 chr4A.!!$F2 5431
1 TraesCS4A01G281200 chr4D 13040489 13045143 4654 False 3645 7071 89.592 367 4730 2 chr4D.!!$F2 4363
2 TraesCS4A01G281200 chr4B 23656100 23661120 5020 False 1365 5502 89.862 6 5117 5 chr4B.!!$F3 5111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 219 0.179189 GCCAATCTGCAACTACACGC 60.179 55.0 0.00 0.00 0.00 5.34 F
1429 1488 0.607489 TGCCAAGCTTGAAGAGGAGC 60.607 55.0 28.05 19.45 39.17 4.70 F
1750 1809 0.394216 TGGGAAACAGGCATGATCCG 60.394 55.0 4.84 0.00 37.05 4.18 F
2517 2579 2.583024 TTCAGGTGTCATTCATGGCA 57.417 45.0 0.00 0.00 40.61 4.92 F
4230 4309 0.402121 AAGGGCCTGTTGAGAAGGTC 59.598 55.0 6.92 0.00 38.80 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1565 0.526954 CAAGCGATCCAAGCCATTGC 60.527 55.0 0.00 0.00 34.91 3.56 R
2578 2640 0.529992 GCTCGTGGATTAACCCCTCG 60.530 60.0 11.68 11.68 40.73 4.63 R
2584 2646 1.009829 CAGCAGGCTCGTGGATTAAC 58.990 55.0 0.00 0.00 0.00 2.01 R
4415 4494 0.249868 GGCCTACATACATGCAGCGA 60.250 55.0 0.00 0.00 0.00 4.93 R
5334 5734 0.026027 CTTGAGAGAAAGATGCGCGC 59.974 55.0 27.26 27.26 0.00 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.730420 TTATTAACAGCTTGTTTCTTTCTGAAC 57.270 29.630 6.82 0.00 41.45 3.18
33 34 5.904362 ACAGCTTGTTTCTTTCTGAACTT 57.096 34.783 0.00 0.00 33.88 2.66
34 35 5.884771 ACAGCTTGTTTCTTTCTGAACTTC 58.115 37.500 0.00 0.00 33.88 3.01
40 41 6.147864 TGTTTCTTTCTGAACTTCCCATTG 57.852 37.500 0.00 0.00 33.88 2.82
41 42 5.890985 TGTTTCTTTCTGAACTTCCCATTGA 59.109 36.000 0.00 0.00 33.88 2.57
47 48 2.486982 CTGAACTTCCCATTGACAGCAG 59.513 50.000 0.00 0.00 0.00 4.24
50 51 0.809385 CTTCCCATTGACAGCAGCTG 59.191 55.000 21.54 21.54 37.52 4.24
57 58 0.598419 TTGACAGCAGCTGACAGTCG 60.598 55.000 29.70 0.08 37.44 4.18
60 61 1.213799 CAGCAGCTGACAGTCGCTA 59.786 57.895 20.43 0.00 34.58 4.26
74 75 6.871492 TGACAGTCGCTATCTGTGAAAATTAA 59.129 34.615 9.37 0.00 44.68 1.40
75 76 7.061752 ACAGTCGCTATCTGTGAAAATTAAC 57.938 36.000 4.89 0.00 43.32 2.01
92 98 7.972832 AAATTAACACTGTATTCTCCAACGA 57.027 32.000 0.00 0.00 0.00 3.85
115 124 7.861372 ACGATGTAGTACTCCATTTTAAGATCG 59.139 37.037 13.07 13.07 34.23 3.69
123 132 9.615295 GTACTCCATTTTAAGATCGATCTAGAC 57.385 37.037 27.52 13.68 35.76 2.59
124 133 8.239038 ACTCCATTTTAAGATCGATCTAGACA 57.761 34.615 27.52 12.79 35.76 3.41
127 136 8.138074 TCCATTTTAAGATCGATCTAGACACAG 58.862 37.037 27.52 14.67 35.76 3.66
184 199 2.095364 GCTCACAAGCCACATTCAGAAG 60.095 50.000 0.00 0.00 43.10 2.85
185 200 2.486982 CTCACAAGCCACATTCAGAAGG 59.513 50.000 0.00 0.00 0.00 3.46
188 203 4.421365 GCCACATTCAGAAGGCCA 57.579 55.556 5.01 0.00 41.25 5.36
189 204 2.657297 GCCACATTCAGAAGGCCAA 58.343 52.632 5.01 0.00 41.25 4.52
190 205 1.188863 GCCACATTCAGAAGGCCAAT 58.811 50.000 5.01 0.00 41.25 3.16
191 206 1.135721 GCCACATTCAGAAGGCCAATC 59.864 52.381 5.01 2.29 41.25 2.67
192 207 2.731572 CCACATTCAGAAGGCCAATCT 58.268 47.619 5.01 5.19 0.00 2.40
193 208 2.426024 CCACATTCAGAAGGCCAATCTG 59.574 50.000 25.13 25.13 44.53 2.90
194 209 2.097825 ACATTCAGAAGGCCAATCTGC 58.902 47.619 25.88 0.00 43.19 4.26
195 210 2.097036 CATTCAGAAGGCCAATCTGCA 58.903 47.619 25.88 19.35 43.19 4.41
196 211 2.291209 TTCAGAAGGCCAATCTGCAA 57.709 45.000 25.88 19.31 43.19 4.08
197 212 1.538047 TCAGAAGGCCAATCTGCAAC 58.462 50.000 25.88 0.22 43.19 4.17
198 213 1.074405 TCAGAAGGCCAATCTGCAACT 59.926 47.619 25.88 2.26 43.19 3.16
199 214 2.305635 TCAGAAGGCCAATCTGCAACTA 59.694 45.455 25.88 11.57 43.19 2.24
200 215 2.421424 CAGAAGGCCAATCTGCAACTAC 59.579 50.000 21.34 0.00 38.03 2.73
201 216 2.040278 AGAAGGCCAATCTGCAACTACA 59.960 45.455 5.01 0.00 0.00 2.74
202 217 1.826385 AGGCCAATCTGCAACTACAC 58.174 50.000 5.01 0.00 0.00 2.90
203 218 0.447801 GGCCAATCTGCAACTACACG 59.552 55.000 0.00 0.00 0.00 4.49
204 219 0.179189 GCCAATCTGCAACTACACGC 60.179 55.000 0.00 0.00 0.00 5.34
205 220 1.155889 CCAATCTGCAACTACACGCA 58.844 50.000 0.00 0.00 36.52 5.24
206 221 1.135972 CCAATCTGCAACTACACGCAC 60.136 52.381 0.00 0.00 33.75 5.34
207 222 0.790207 AATCTGCAACTACACGCACG 59.210 50.000 0.00 0.00 33.75 5.34
208 223 1.626654 ATCTGCAACTACACGCACGC 61.627 55.000 0.00 0.00 33.75 5.34
209 224 3.295228 CTGCAACTACACGCACGCC 62.295 63.158 0.00 0.00 33.75 5.68
210 225 3.041940 GCAACTACACGCACGCCT 61.042 61.111 0.00 0.00 0.00 5.52
211 226 1.735198 GCAACTACACGCACGCCTA 60.735 57.895 0.00 0.00 0.00 3.93
212 227 1.683790 GCAACTACACGCACGCCTAG 61.684 60.000 0.00 0.00 0.00 3.02
227 242 4.624024 CACGCCTAGTTTAATCTTGTTCGA 59.376 41.667 10.99 0.00 0.00 3.71
230 245 5.004535 CGCCTAGTTTAATCTTGTTCGAGTC 59.995 44.000 0.00 0.00 0.00 3.36
252 267 3.181511 CGTGATTTTCTCTGGCGCATTAA 60.182 43.478 10.83 0.00 0.00 1.40
273 288 7.823745 TTAATTTATTCCCTCAGAGAATGCC 57.176 36.000 0.00 0.00 35.59 4.40
296 311 4.991687 CACTTTCTCGTAAAGAGGCTTTCT 59.008 41.667 16.33 0.00 46.82 2.52
302 317 7.860461 TCTCGTAAAGAGGCTTTCTGATGCC 62.860 48.000 12.46 12.46 46.82 4.40
309 325 1.798735 CTTTCTGATGCCGCACCTG 59.201 57.895 0.00 0.00 0.00 4.00
316 332 3.210012 ATGCCGCACCTGGAAAGGT 62.210 57.895 0.00 0.00 44.23 3.50
344 360 4.143030 CCAGTATCGAGTTCAGCACTTTTG 60.143 45.833 0.00 0.00 35.01 2.44
346 362 4.686554 AGTATCGAGTTCAGCACTTTTGTC 59.313 41.667 0.00 0.00 35.01 3.18
348 364 1.264288 CGAGTTCAGCACTTTTGTCCC 59.736 52.381 0.00 0.00 35.01 4.46
353 369 4.222810 AGTTCAGCACTTTTGTCCCTTTTT 59.777 37.500 0.00 0.00 27.32 1.94
451 472 4.851558 CGGAAGTTTTCTCCGCAAAAATAG 59.148 41.667 0.00 0.00 40.25 1.73
685 712 5.640189 TGTGTTTCTGTAGTAGCTAGTCC 57.360 43.478 3.81 0.00 0.00 3.85
893 920 8.613060 TTTTATCTCTCCATCTTATGTGCATC 57.387 34.615 0.00 0.00 0.00 3.91
1053 1112 9.837525 CTTCTGTTCATTAAAATCCTCTTGAAG 57.162 33.333 0.00 0.00 0.00 3.02
1110 1169 4.843220 ACCAAAATTCTGAAGCACTGAG 57.157 40.909 0.00 0.00 0.00 3.35
1153 1212 5.590259 TCTTGGAAATTGTCTATAGCTTGGC 59.410 40.000 0.00 0.00 0.00 4.52
1307 1366 3.510753 TGACGTATTGCCACCTACTTACA 59.489 43.478 0.00 0.00 0.00 2.41
1429 1488 0.607489 TGCCAAGCTTGAAGAGGAGC 60.607 55.000 28.05 19.45 39.17 4.70
1475 1534 3.118884 GCCGTCAAAGTCTCCCTATTGTA 60.119 47.826 0.00 0.00 0.00 2.41
1506 1565 6.535150 ACATTTGATAATGACGTGGAGTACAG 59.465 38.462 0.00 0.00 43.12 2.74
1741 1800 4.102113 CCTGGCTTGGGAAACAGG 57.898 61.111 0.00 0.00 43.87 4.00
1750 1809 0.394216 TGGGAAACAGGCATGATCCG 60.394 55.000 4.84 0.00 37.05 4.18
1835 1897 3.393089 AGTTGGCTGAGTCTGTTGTAG 57.607 47.619 0.00 0.00 0.00 2.74
1848 1910 4.991056 GTCTGTTGTAGTGAGCAATGAGAA 59.009 41.667 0.00 0.00 0.00 2.87
1945 2007 5.567037 TCAATTCTCTGTCAAAGGGAGAA 57.433 39.130 7.01 7.01 45.89 2.87
2095 2157 3.561725 CCTTTCGGAAGTATGATGAAGGC 59.438 47.826 2.03 0.00 0.00 4.35
2191 2253 3.240069 GCATGCTCAGATTCAACACAAC 58.760 45.455 11.37 0.00 0.00 3.32
2195 2257 4.923893 TGCTCAGATTCAACACAACAAAG 58.076 39.130 0.00 0.00 0.00 2.77
2464 2526 4.098807 GTGGTAAAAAGTCTTGCCTTGGAA 59.901 41.667 0.00 0.00 32.66 3.53
2517 2579 2.583024 TTCAGGTGTCATTCATGGCA 57.417 45.000 0.00 0.00 40.61 4.92
2578 2640 2.847133 GAGAGTATTGTTCGCGACAGAC 59.153 50.000 9.15 5.15 39.94 3.51
2584 2646 3.744719 TTCGCGACAGACGAGGGG 61.745 66.667 9.15 0.00 45.77 4.79
2968 3032 7.375106 ACTCAATTCACTCATTCAGAATCAC 57.625 36.000 0.00 0.00 31.21 3.06
3517 3586 5.648092 AGACTAGTGCTTGTGTCTTTTTGTT 59.352 36.000 0.00 0.00 36.50 2.83
4070 4149 1.071605 CTTGAGAGCAAGTACGCCAC 58.928 55.000 0.00 0.00 45.10 5.01
4074 4153 2.076863 GAGAGCAAGTACGCCACAATT 58.923 47.619 0.00 0.00 0.00 2.32
4230 4309 0.402121 AAGGGCCTGTTGAGAAGGTC 59.598 55.000 6.92 0.00 38.80 3.85
4242 4321 4.038271 TGAGAAGGTCTGGCAAATGATT 57.962 40.909 0.00 0.00 0.00 2.57
4245 4324 3.760684 AGAAGGTCTGGCAAATGATTGTC 59.239 43.478 0.00 0.00 41.62 3.18
4331 4410 9.896645 GATGGAACTTGGTGATGACATATATAT 57.103 33.333 0.00 0.00 0.00 0.86
4398 4477 6.830324 TGGAAGAAGTCATATTGGAATTCCTG 59.170 38.462 24.73 14.67 41.45 3.86
4415 4494 0.896019 CTGTCACTCTCAGGGTCGGT 60.896 60.000 0.00 0.00 0.00 4.69
4432 4511 1.502231 GGTCGCTGCATGTATGTAGG 58.498 55.000 11.12 3.13 40.31 3.18
4433 4512 0.861837 GTCGCTGCATGTATGTAGGC 59.138 55.000 11.12 4.03 40.31 3.93
4438 4517 2.223572 GCTGCATGTATGTAGGCCAAAC 60.224 50.000 5.01 2.84 40.31 2.93
4503 4593 7.721399 AGTCTGAGTTAGTTTTTCCATGAACAT 59.279 33.333 0.00 0.00 0.00 2.71
4546 4639 2.364002 AGCGTTACCATTTGTTGCCTTT 59.636 40.909 0.00 0.00 0.00 3.11
4547 4640 2.729360 GCGTTACCATTTGTTGCCTTTC 59.271 45.455 0.00 0.00 0.00 2.62
4551 4644 5.356426 GTTACCATTTGTTGCCTTTCAAGT 58.644 37.500 0.00 0.00 34.91 3.16
4552 4645 3.795877 ACCATTTGTTGCCTTTCAAGTG 58.204 40.909 0.00 0.00 34.91 3.16
4553 4646 2.545106 CCATTTGTTGCCTTTCAAGTGC 59.455 45.455 0.00 0.00 34.91 4.40
4554 4647 3.196463 CATTTGTTGCCTTTCAAGTGCA 58.804 40.909 0.00 0.00 34.91 4.57
4555 4648 2.292103 TTGTTGCCTTTCAAGTGCAC 57.708 45.000 9.40 9.40 34.91 4.57
4556 4649 1.180907 TGTTGCCTTTCAAGTGCACA 58.819 45.000 21.04 0.00 34.91 4.57
4557 4650 1.134753 TGTTGCCTTTCAAGTGCACAG 59.865 47.619 21.04 11.41 34.91 3.66
4558 4651 1.405105 GTTGCCTTTCAAGTGCACAGA 59.595 47.619 21.04 13.78 34.91 3.41
4559 4652 1.985473 TGCCTTTCAAGTGCACAGAT 58.015 45.000 21.04 1.26 30.72 2.90
4561 4654 1.610522 GCCTTTCAAGTGCACAGATGT 59.389 47.619 21.04 0.00 0.00 3.06
4562 4655 2.813754 GCCTTTCAAGTGCACAGATGTA 59.186 45.455 21.04 6.09 0.00 2.29
4673 5044 3.492102 ACAGTAACCAAGATGTGCTGT 57.508 42.857 0.00 0.00 33.36 4.40
4675 5046 2.095567 CAGTAACCAAGATGTGCTGTGC 60.096 50.000 0.00 0.00 0.00 4.57
4686 5057 1.281577 TGTGCTGTGCTGGGATTGATA 59.718 47.619 0.00 0.00 0.00 2.15
4702 5073 9.342308 TGGGATTGATAGTAGAAATTTGATCAC 57.658 33.333 0.00 0.00 0.00 3.06
4710 5081 3.274288 AGAAATTTGATCACTCCGCCTC 58.726 45.455 0.00 0.00 0.00 4.70
4716 5087 1.202770 TGATCACTCCGCCTCGAGATA 60.203 52.381 15.71 0.00 33.83 1.98
4745 5138 4.644103 TTACCGCCACTGTTCTATACTC 57.356 45.455 0.00 0.00 0.00 2.59
4747 5140 1.068741 CCGCCACTGTTCTATACTCCC 59.931 57.143 0.00 0.00 0.00 4.30
4748 5141 2.032620 CGCCACTGTTCTATACTCCCT 58.967 52.381 0.00 0.00 0.00 4.20
4751 5144 3.643237 CCACTGTTCTATACTCCCTCCA 58.357 50.000 0.00 0.00 0.00 3.86
4752 5145 4.227197 CCACTGTTCTATACTCCCTCCAT 58.773 47.826 0.00 0.00 0.00 3.41
4754 5147 5.144100 CACTGTTCTATACTCCCTCCATCT 58.856 45.833 0.00 0.00 0.00 2.90
4755 5148 5.242838 CACTGTTCTATACTCCCTCCATCTC 59.757 48.000 0.00 0.00 0.00 2.75
4756 5149 4.399219 TGTTCTATACTCCCTCCATCTCG 58.601 47.826 0.00 0.00 0.00 4.04
4757 5150 4.104261 TGTTCTATACTCCCTCCATCTCGA 59.896 45.833 0.00 0.00 0.00 4.04
4758 5151 4.561500 TCTATACTCCCTCCATCTCGAG 57.438 50.000 5.93 5.93 0.00 4.04
4759 5152 3.911260 TCTATACTCCCTCCATCTCGAGT 59.089 47.826 13.13 0.00 38.97 4.18
4760 5153 5.092259 TCTATACTCCCTCCATCTCGAGTA 58.908 45.833 13.13 0.00 40.93 2.59
4762 5155 2.657143 ACTCCCTCCATCTCGAGTAAC 58.343 52.381 13.13 0.00 33.87 2.50
4764 5157 3.292460 CTCCCTCCATCTCGAGTAACTT 58.708 50.000 13.13 0.00 0.00 2.66
4765 5158 3.024547 TCCCTCCATCTCGAGTAACTTG 58.975 50.000 13.13 4.03 0.00 3.16
4766 5159 2.761208 CCCTCCATCTCGAGTAACTTGT 59.239 50.000 13.13 0.00 0.00 3.16
4767 5160 3.181485 CCCTCCATCTCGAGTAACTTGTC 60.181 52.174 13.13 0.00 0.00 3.18
4769 5162 2.159421 TCCATCTCGAGTAACTTGTCGC 60.159 50.000 13.13 0.00 36.11 5.19
4770 5163 2.159366 CCATCTCGAGTAACTTGTCGCT 60.159 50.000 13.13 0.00 36.11 4.93
4772 5165 2.148768 TCTCGAGTAACTTGTCGCTCA 58.851 47.619 13.13 0.00 36.11 4.26
4773 5166 2.551032 TCTCGAGTAACTTGTCGCTCAA 59.449 45.455 13.13 0.00 36.11 3.02
4774 5167 3.004002 TCTCGAGTAACTTGTCGCTCAAA 59.996 43.478 13.13 0.00 36.11 2.69
4776 5169 3.673338 TCGAGTAACTTGTCGCTCAAATG 59.327 43.478 0.00 0.00 36.11 2.32
4777 5170 3.673338 CGAGTAACTTGTCGCTCAAATGA 59.327 43.478 0.00 0.00 35.48 2.57
4778 5171 4.149922 CGAGTAACTTGTCGCTCAAATGAA 59.850 41.667 0.00 0.00 35.48 2.57
4779 5172 5.163953 CGAGTAACTTGTCGCTCAAATGAAT 60.164 40.000 0.00 0.00 35.48 2.57
4780 5173 5.931532 AGTAACTTGTCGCTCAAATGAATG 58.068 37.500 0.00 0.00 35.48 2.67
4781 5174 4.836125 AACTTGTCGCTCAAATGAATGT 57.164 36.364 0.00 0.00 35.48 2.71
4782 5175 5.940192 AACTTGTCGCTCAAATGAATGTA 57.060 34.783 0.00 0.00 35.48 2.29
4784 5177 6.111768 ACTTGTCGCTCAAATGAATGTATC 57.888 37.500 0.00 0.00 35.48 2.24
4785 5178 5.877012 ACTTGTCGCTCAAATGAATGTATCT 59.123 36.000 0.00 0.00 35.48 1.98
4787 5180 7.223582 ACTTGTCGCTCAAATGAATGTATCTAG 59.776 37.037 0.00 0.00 35.48 2.43
4790 5183 6.146837 GTCGCTCAAATGAATGTATCTAGCAT 59.853 38.462 0.00 0.00 0.00 3.79
4793 5186 7.307573 CGCTCAAATGAATGTATCTAGCATTGA 60.308 37.037 0.00 0.00 36.77 2.57
4794 5187 8.347771 GCTCAAATGAATGTATCTAGCATTGAA 58.652 33.333 0.00 0.00 36.77 2.69
4813 5206 8.749499 GCATTGAAAAATGAATGTATCTAGCAC 58.251 33.333 2.69 0.00 32.98 4.40
4843 5236 9.832445 TTTAGTGGTAGATAGATCCATTTGAAC 57.168 33.333 0.00 0.00 33.68 3.18
4844 5237 6.516718 AGTGGTAGATAGATCCATTTGAACG 58.483 40.000 0.00 0.00 33.68 3.95
4845 5238 6.323996 AGTGGTAGATAGATCCATTTGAACGA 59.676 38.462 0.00 0.00 33.68 3.85
4846 5239 6.421202 GTGGTAGATAGATCCATTTGAACGAC 59.579 42.308 0.00 0.00 33.68 4.34
4847 5240 6.097696 TGGTAGATAGATCCATTTGAACGACA 59.902 38.462 0.00 0.00 0.00 4.35
4848 5241 6.984474 GGTAGATAGATCCATTTGAACGACAA 59.016 38.462 0.00 0.00 36.65 3.18
4849 5242 7.169982 GGTAGATAGATCCATTTGAACGACAAG 59.830 40.741 0.00 0.00 39.77 3.16
4850 5243 6.644347 AGATAGATCCATTTGAACGACAAGT 58.356 36.000 0.00 0.00 39.77 3.16
4851 5244 7.782049 AGATAGATCCATTTGAACGACAAGTA 58.218 34.615 0.00 0.00 39.77 2.24
4852 5245 8.424918 AGATAGATCCATTTGAACGACAAGTAT 58.575 33.333 0.00 0.00 39.77 2.12
4853 5246 8.964476 ATAGATCCATTTGAACGACAAGTATT 57.036 30.769 0.00 0.00 39.77 1.89
4854 5247 7.687941 AGATCCATTTGAACGACAAGTATTT 57.312 32.000 0.00 0.00 39.77 1.40
4855 5248 7.752695 AGATCCATTTGAACGACAAGTATTTC 58.247 34.615 0.00 0.00 39.77 2.17
4856 5249 6.249035 TCCATTTGAACGACAAGTATTTCC 57.751 37.500 0.00 0.00 39.77 3.13
4875 5268 1.339291 CCGGACGGAGGGAGTATTAAC 59.661 57.143 4.40 0.00 37.50 2.01
4936 5329 5.990668 AGGCTAACAGGAAACTATACAAGG 58.009 41.667 0.00 0.00 40.21 3.61
4956 5355 7.616313 ACAAGGTAGTTAGAAAGAAGAGATGG 58.384 38.462 0.00 0.00 0.00 3.51
4960 5359 8.700973 AGGTAGTTAGAAAGAAGAGATGGAATC 58.299 37.037 0.00 0.00 46.04 2.52
4995 5394 5.221641 TGAGCAAGCTCTGGTTTTACTCTAA 60.222 40.000 21.35 0.00 43.12 2.10
5073 5472 6.381133 TGGTCTGATCTTCTCAAAGTAGCATA 59.619 38.462 0.00 0.00 32.14 3.14
5105 5505 0.896923 TCCAAATGTTCCATGCTGCC 59.103 50.000 0.00 0.00 0.00 4.85
5109 5509 3.139850 CAAATGTTCCATGCTGCCAAAA 58.860 40.909 0.00 0.00 0.00 2.44
5110 5510 3.706600 AATGTTCCATGCTGCCAAAAT 57.293 38.095 0.00 0.00 0.00 1.82
5112 5512 4.822685 ATGTTCCATGCTGCCAAAATAA 57.177 36.364 0.00 0.00 0.00 1.40
5113 5513 3.924144 TGTTCCATGCTGCCAAAATAAC 58.076 40.909 0.00 0.00 0.00 1.89
5115 5515 4.202295 TGTTCCATGCTGCCAAAATAACAA 60.202 37.500 0.00 0.00 0.00 2.83
5116 5516 4.822685 TCCATGCTGCCAAAATAACAAT 57.177 36.364 0.00 0.00 0.00 2.71
5117 5517 5.163281 TCCATGCTGCCAAAATAACAATT 57.837 34.783 0.00 0.00 0.00 2.32
5118 5518 6.291648 TCCATGCTGCCAAAATAACAATTA 57.708 33.333 0.00 0.00 0.00 1.40
5119 5519 6.705302 TCCATGCTGCCAAAATAACAATTAA 58.295 32.000 0.00 0.00 0.00 1.40
5120 5520 7.164122 TCCATGCTGCCAAAATAACAATTAAA 58.836 30.769 0.00 0.00 0.00 1.52
5121 5521 7.118971 TCCATGCTGCCAAAATAACAATTAAAC 59.881 33.333 0.00 0.00 0.00 2.01
5122 5522 6.793492 TGCTGCCAAAATAACAATTAAACC 57.207 33.333 0.00 0.00 0.00 3.27
5123 5523 5.703130 TGCTGCCAAAATAACAATTAAACCC 59.297 36.000 0.00 0.00 0.00 4.11
5124 5524 5.703130 GCTGCCAAAATAACAATTAAACCCA 59.297 36.000 0.00 0.00 0.00 4.51
5125 5525 6.374053 GCTGCCAAAATAACAATTAAACCCAT 59.626 34.615 0.00 0.00 0.00 4.00
5126 5526 7.094420 GCTGCCAAAATAACAATTAAACCCATT 60.094 33.333 0.00 0.00 0.00 3.16
5127 5527 9.442047 CTGCCAAAATAACAATTAAACCCATTA 57.558 29.630 0.00 0.00 0.00 1.90
5128 5528 9.793259 TGCCAAAATAACAATTAAACCCATTAA 57.207 25.926 0.00 0.00 37.86 1.40
5134 5534 8.710835 ATAACAATTAAACCCATTAAAAGGCG 57.289 30.769 0.00 0.00 37.06 5.52
5135 5535 4.932799 ACAATTAAACCCATTAAAAGGCGC 59.067 37.500 0.00 0.00 37.06 6.53
5136 5536 5.175127 CAATTAAACCCATTAAAAGGCGCT 58.825 37.500 7.64 0.00 37.06 5.92
5137 5537 6.071278 ACAATTAAACCCATTAAAAGGCGCTA 60.071 34.615 7.64 0.00 37.06 4.26
5138 5538 5.570234 TTAAACCCATTAAAAGGCGCTAG 57.430 39.130 7.64 0.00 30.57 3.42
5139 5539 3.359695 AACCCATTAAAAGGCGCTAGA 57.640 42.857 7.64 0.00 0.00 2.43
5140 5540 3.359695 ACCCATTAAAAGGCGCTAGAA 57.640 42.857 7.64 0.00 0.00 2.10
5141 5541 3.898482 ACCCATTAAAAGGCGCTAGAAT 58.102 40.909 7.64 0.00 0.00 2.40
5142 5542 3.632145 ACCCATTAAAAGGCGCTAGAATG 59.368 43.478 7.64 10.24 0.00 2.67
5143 5543 3.004734 CCCATTAAAAGGCGCTAGAATGG 59.995 47.826 22.10 22.10 41.90 3.16
5144 5544 3.632145 CCATTAAAAGGCGCTAGAATGGT 59.368 43.478 21.37 1.41 38.88 3.55
5145 5545 4.498009 CCATTAAAAGGCGCTAGAATGGTG 60.498 45.833 21.37 9.15 38.88 4.17
5146 5546 1.463674 AAAAGGCGCTAGAATGGTGG 58.536 50.000 7.64 0.00 0.00 4.61
5148 5548 2.902343 GGCGCTAGAATGGTGGCC 60.902 66.667 7.64 0.00 46.79 5.36
5149 5549 2.124736 GCGCTAGAATGGTGGCCA 60.125 61.111 0.00 0.00 38.19 5.36
5150 5550 1.748879 GCGCTAGAATGGTGGCCAA 60.749 57.895 7.24 0.00 36.95 4.52
5151 5551 1.993369 GCGCTAGAATGGTGGCCAAC 61.993 60.000 15.99 15.99 36.95 3.77
5161 5561 4.715523 TGGCCAACCAGCTACGCC 62.716 66.667 0.61 0.00 42.67 5.68
5162 5562 4.715523 GGCCAACCAGCTACGCCA 62.716 66.667 0.00 0.00 39.50 5.69
5163 5563 2.438434 GCCAACCAGCTACGCCAT 60.438 61.111 0.00 0.00 0.00 4.40
5164 5564 2.764314 GCCAACCAGCTACGCCATG 61.764 63.158 0.00 0.00 0.00 3.66
5165 5565 1.377202 CCAACCAGCTACGCCATGT 60.377 57.895 0.00 0.00 0.00 3.21
5166 5566 1.647545 CCAACCAGCTACGCCATGTG 61.648 60.000 0.00 0.00 0.00 3.21
5167 5567 1.377202 AACCAGCTACGCCATGTGG 60.377 57.895 0.00 0.00 38.53 4.17
5179 5579 2.677524 ATGTGGCGCATGCTGGTT 60.678 55.556 17.13 0.00 42.25 3.67
5180 5580 2.997075 ATGTGGCGCATGCTGGTTG 61.997 57.895 17.13 0.00 42.25 3.77
5181 5581 4.424566 GTGGCGCATGCTGGTTGG 62.425 66.667 17.13 0.00 42.25 3.77
5182 5582 4.972733 TGGCGCATGCTGGTTGGT 62.973 61.111 17.13 0.00 42.25 3.67
5183 5583 4.120331 GGCGCATGCTGGTTGGTC 62.120 66.667 17.13 0.00 42.25 4.02
5184 5584 3.364441 GCGCATGCTGGTTGGTCA 61.364 61.111 17.13 0.00 38.39 4.02
5185 5585 2.562912 CGCATGCTGGTTGGTCAC 59.437 61.111 17.13 0.00 0.00 3.67
5186 5586 2.260154 CGCATGCTGGTTGGTCACA 61.260 57.895 17.13 0.00 0.00 3.58
5187 5587 1.582968 GCATGCTGGTTGGTCACAG 59.417 57.895 11.37 0.00 37.76 3.66
5188 5588 1.174712 GCATGCTGGTTGGTCACAGT 61.175 55.000 11.37 0.00 37.07 3.55
5189 5589 0.594602 CATGCTGGTTGGTCACAGTG 59.405 55.000 0.00 0.00 37.07 3.66
5190 5590 0.473755 ATGCTGGTTGGTCACAGTGA 59.526 50.000 0.00 0.00 37.07 3.41
5191 5591 0.179048 TGCTGGTTGGTCACAGTGAG 60.179 55.000 2.53 0.00 37.07 3.51
5192 5592 0.106708 GCTGGTTGGTCACAGTGAGA 59.893 55.000 2.53 0.00 37.07 3.27
5193 5593 1.475034 GCTGGTTGGTCACAGTGAGAA 60.475 52.381 2.53 0.00 37.07 2.87
5194 5594 2.917933 CTGGTTGGTCACAGTGAGAAA 58.082 47.619 2.53 0.00 0.00 2.52
5195 5595 2.874701 CTGGTTGGTCACAGTGAGAAAG 59.125 50.000 2.53 0.00 0.00 2.62
5196 5596 2.238646 TGGTTGGTCACAGTGAGAAAGT 59.761 45.455 2.53 0.00 0.00 2.66
5197 5597 3.452990 TGGTTGGTCACAGTGAGAAAGTA 59.547 43.478 2.53 0.00 0.00 2.24
5198 5598 4.102524 TGGTTGGTCACAGTGAGAAAGTAT 59.897 41.667 2.53 0.00 0.00 2.12
5199 5599 5.063880 GGTTGGTCACAGTGAGAAAGTATT 58.936 41.667 2.53 0.00 0.00 1.89
5200 5600 5.531287 GGTTGGTCACAGTGAGAAAGTATTT 59.469 40.000 2.53 0.00 43.98 1.40
5201 5601 6.039382 GGTTGGTCACAGTGAGAAAGTATTTT 59.961 38.462 2.53 0.00 39.27 1.82
5202 5602 7.416326 GGTTGGTCACAGTGAGAAAGTATTTTT 60.416 37.037 2.53 0.00 39.27 1.94
5286 5686 9.936759 TTCTTTTTCCTTTTAAGATTGTTGTGT 57.063 25.926 0.00 0.00 0.00 3.72
5287 5687 9.364989 TCTTTTTCCTTTTAAGATTGTTGTGTG 57.635 29.630 0.00 0.00 0.00 3.82
5288 5688 7.532682 TTTTCCTTTTAAGATTGTTGTGTGC 57.467 32.000 0.00 0.00 0.00 4.57
5289 5689 5.843673 TCCTTTTAAGATTGTTGTGTGCA 57.156 34.783 0.00 0.00 0.00 4.57
5290 5690 5.587289 TCCTTTTAAGATTGTTGTGTGCAC 58.413 37.500 10.75 10.75 0.00 4.57
5291 5691 4.440758 CCTTTTAAGATTGTTGTGTGCACG 59.559 41.667 13.13 0.00 0.00 5.34
5292 5692 4.624336 TTTAAGATTGTTGTGTGCACGT 57.376 36.364 13.13 0.00 0.00 4.49
5293 5693 2.473530 AAGATTGTTGTGTGCACGTG 57.526 45.000 12.28 12.28 0.00 4.49
5294 5694 1.662517 AGATTGTTGTGTGCACGTGA 58.337 45.000 22.23 1.04 0.00 4.35
5295 5695 2.221169 AGATTGTTGTGTGCACGTGAT 58.779 42.857 22.23 0.00 0.00 3.06
5296 5696 2.031769 AGATTGTTGTGTGCACGTGATG 60.032 45.455 22.23 0.00 0.00 3.07
5307 5707 3.592381 GCACGTGATGCGAGAATATTT 57.408 42.857 22.23 0.00 46.55 1.40
5308 5708 3.940303 GCACGTGATGCGAGAATATTTT 58.060 40.909 22.23 0.00 46.55 1.82
5309 5709 4.342772 GCACGTGATGCGAGAATATTTTT 58.657 39.130 22.23 0.00 46.55 1.94
5331 5731 7.670009 TTTTAATTTTTGGCATGATGGTGAG 57.330 32.000 0.00 0.00 0.00 3.51
5332 5732 3.899052 ATTTTTGGCATGATGGTGAGG 57.101 42.857 0.00 0.00 0.00 3.86
5333 5733 2.307496 TTTTGGCATGATGGTGAGGT 57.693 45.000 0.00 0.00 0.00 3.85
5334 5734 1.548081 TTTGGCATGATGGTGAGGTG 58.452 50.000 0.00 0.00 0.00 4.00
5335 5735 0.966875 TTGGCATGATGGTGAGGTGC 60.967 55.000 0.00 0.00 35.17 5.01
5336 5736 2.475466 GGCATGATGGTGAGGTGCG 61.475 63.158 0.00 0.00 36.70 5.34
5337 5737 3.104766 CATGATGGTGAGGTGCGC 58.895 61.111 0.00 0.00 0.00 6.09
5338 5738 2.512286 ATGATGGTGAGGTGCGCG 60.512 61.111 0.00 0.00 0.00 6.86
5341 5741 4.783621 ATGGTGAGGTGCGCGCAT 62.784 61.111 38.62 23.65 0.00 4.73
5344 5744 3.121030 GTGAGGTGCGCGCATCTT 61.121 61.111 43.65 28.91 37.55 2.40
5345 5745 2.358615 TGAGGTGCGCGCATCTTT 60.359 55.556 43.65 26.81 37.55 2.52
5346 5746 2.390599 TGAGGTGCGCGCATCTTTC 61.391 57.895 43.65 32.54 37.55 2.62
5347 5747 2.046892 AGGTGCGCGCATCTTTCT 60.047 55.556 39.62 25.17 32.77 2.52
5348 5748 2.029904 GAGGTGCGCGCATCTTTCTC 62.030 60.000 43.65 31.80 37.55 2.87
5349 5749 2.103042 GGTGCGCGCATCTTTCTCT 61.103 57.895 38.62 0.00 0.00 3.10
5350 5750 1.346538 GTGCGCGCATCTTTCTCTC 59.653 57.895 38.62 17.25 0.00 3.20
5351 5751 1.079888 TGCGCGCATCTTTCTCTCA 60.080 52.632 33.09 1.47 0.00 3.27
5352 5752 0.670239 TGCGCGCATCTTTCTCTCAA 60.670 50.000 33.09 1.22 0.00 3.02
5353 5753 0.026027 GCGCGCATCTTTCTCTCAAG 59.974 55.000 29.10 0.00 0.00 3.02
5354 5754 0.026027 CGCGCATCTTTCTCTCAAGC 59.974 55.000 8.75 0.00 0.00 4.01
5355 5755 0.026027 GCGCATCTTTCTCTCAAGCG 59.974 55.000 0.30 0.00 45.68 4.68
5356 5756 0.649475 CGCATCTTTCTCTCAAGCGG 59.351 55.000 0.00 0.00 40.00 5.52
5357 5757 0.376502 GCATCTTTCTCTCAAGCGGC 59.623 55.000 0.00 0.00 0.00 6.53
5358 5758 1.012841 CATCTTTCTCTCAAGCGGCC 58.987 55.000 0.00 0.00 0.00 6.13
5359 5759 0.107459 ATCTTTCTCTCAAGCGGCCC 60.107 55.000 0.00 0.00 0.00 5.80
5360 5760 1.003355 CTTTCTCTCAAGCGGCCCA 60.003 57.895 0.00 0.00 0.00 5.36
5361 5761 1.301677 CTTTCTCTCAAGCGGCCCAC 61.302 60.000 0.00 0.00 0.00 4.61
5362 5762 2.050836 TTTCTCTCAAGCGGCCCACA 62.051 55.000 0.00 0.00 0.00 4.17
5363 5763 2.032528 CTCTCAAGCGGCCCACAA 59.967 61.111 0.00 0.00 0.00 3.33
5364 5764 1.377725 CTCTCAAGCGGCCCACAAT 60.378 57.895 0.00 0.00 0.00 2.71
5365 5765 1.651240 CTCTCAAGCGGCCCACAATG 61.651 60.000 0.00 0.00 0.00 2.82
5366 5766 2.676121 TCAAGCGGCCCACAATGG 60.676 61.111 0.00 0.00 37.25 3.16
5383 5783 4.796495 GCGGGCCCCAACCACTAG 62.796 72.222 18.66 0.00 0.00 2.57
5384 5784 3.327404 CGGGCCCCAACCACTAGT 61.327 66.667 18.66 0.00 0.00 2.57
5385 5785 2.675371 GGGCCCCAACCACTAGTC 59.325 66.667 12.23 0.00 0.00 2.59
5386 5786 1.923909 GGGCCCCAACCACTAGTCT 60.924 63.158 12.23 0.00 0.00 3.24
5387 5787 1.602771 GGCCCCAACCACTAGTCTC 59.397 63.158 0.00 0.00 0.00 3.36
5388 5788 0.910088 GGCCCCAACCACTAGTCTCT 60.910 60.000 0.00 0.00 0.00 3.10
5389 5789 0.984995 GCCCCAACCACTAGTCTCTT 59.015 55.000 0.00 0.00 0.00 2.85
5390 5790 1.351350 GCCCCAACCACTAGTCTCTTT 59.649 52.381 0.00 0.00 0.00 2.52
5391 5791 2.615747 GCCCCAACCACTAGTCTCTTTC 60.616 54.545 0.00 0.00 0.00 2.62
5392 5792 2.637872 CCCCAACCACTAGTCTCTTTCA 59.362 50.000 0.00 0.00 0.00 2.69
5393 5793 3.072476 CCCCAACCACTAGTCTCTTTCAA 59.928 47.826 0.00 0.00 0.00 2.69
5394 5794 4.319177 CCCAACCACTAGTCTCTTTCAAG 58.681 47.826 0.00 0.00 0.00 3.02
5395 5795 4.040461 CCCAACCACTAGTCTCTTTCAAGA 59.960 45.833 0.00 0.00 0.00 3.02
5403 5803 3.566130 CTCTTTCAAGAGGGGGCTG 57.434 57.895 8.50 0.00 46.88 4.85
5404 5804 0.987294 CTCTTTCAAGAGGGGGCTGA 59.013 55.000 8.50 0.00 46.88 4.26
5405 5805 1.563410 CTCTTTCAAGAGGGGGCTGAT 59.437 52.381 8.50 0.00 46.88 2.90
5406 5806 1.283029 TCTTTCAAGAGGGGGCTGATG 59.717 52.381 0.00 0.00 0.00 3.07
5407 5807 0.323725 TTTCAAGAGGGGGCTGATGC 60.324 55.000 0.00 0.00 38.76 3.91
5419 5819 2.304751 GCTGATGCCATTCCTTTTGG 57.695 50.000 0.00 0.00 42.21 3.28
5420 5820 1.551883 GCTGATGCCATTCCTTTTGGT 59.448 47.619 0.00 0.00 41.38 3.67
5421 5821 2.417787 GCTGATGCCATTCCTTTTGGTC 60.418 50.000 0.00 0.00 41.38 4.02
5422 5822 2.167075 CTGATGCCATTCCTTTTGGTCC 59.833 50.000 0.00 0.00 41.38 4.46
5423 5823 2.178580 GATGCCATTCCTTTTGGTCCA 58.821 47.619 0.00 0.00 41.38 4.02
5424 5824 2.094100 TGCCATTCCTTTTGGTCCAA 57.906 45.000 0.00 0.00 41.38 3.53
5425 5825 2.618794 TGCCATTCCTTTTGGTCCAAT 58.381 42.857 4.80 0.00 41.38 3.16
5426 5826 2.978278 TGCCATTCCTTTTGGTCCAATT 59.022 40.909 4.80 0.00 41.38 2.32
5427 5827 3.007831 TGCCATTCCTTTTGGTCCAATTC 59.992 43.478 4.80 0.00 41.38 2.17
5428 5828 3.619733 GCCATTCCTTTTGGTCCAATTCC 60.620 47.826 4.80 0.00 41.38 3.01
5429 5829 3.368323 CCATTCCTTTTGGTCCAATTCCG 60.368 47.826 4.80 0.00 41.38 4.30
5430 5830 2.668144 TCCTTTTGGTCCAATTCCGT 57.332 45.000 4.80 0.00 41.38 4.69
5431 5831 2.510613 TCCTTTTGGTCCAATTCCGTC 58.489 47.619 4.80 0.00 41.38 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.391148 AGTTCAGAAAGAAACAAGCTGTTAA 57.609 32.000 0.00 0.00 40.14 2.01
14 15 4.097892 TGGGAAGTTCAGAAAGAAACAAGC 59.902 41.667 5.01 0.00 38.13 4.01
24 25 3.149196 GCTGTCAATGGGAAGTTCAGAA 58.851 45.455 5.01 0.00 0.00 3.02
31 32 0.809385 CAGCTGCTGTCAATGGGAAG 59.191 55.000 21.21 0.00 0.00 3.46
33 34 0.321919 GTCAGCTGCTGTCAATGGGA 60.322 55.000 27.24 4.44 32.61 4.37
34 35 0.607217 TGTCAGCTGCTGTCAATGGG 60.607 55.000 27.24 1.19 32.61 4.00
40 41 2.378858 GCGACTGTCAGCTGCTGTC 61.379 63.158 27.24 22.49 32.61 3.51
41 42 1.527433 TAGCGACTGTCAGCTGCTGT 61.527 55.000 27.24 13.92 44.32 4.40
47 48 1.133216 TCACAGATAGCGACTGTCAGC 59.867 52.381 8.73 11.81 45.15 4.26
50 51 5.786401 AATTTTCACAGATAGCGACTGTC 57.214 39.130 9.71 0.00 45.15 3.51
74 75 4.537135 ACATCGTTGGAGAATACAGTGT 57.463 40.909 0.00 0.00 0.00 3.55
75 76 5.651530 ACTACATCGTTGGAGAATACAGTG 58.348 41.667 12.74 0.00 35.62 3.66
92 98 9.915629 GATCGATCTTAAAATGGAGTACTACAT 57.084 33.333 15.29 15.29 35.14 2.29
115 124 0.173481 TGTGCGCCTGTGTCTAGATC 59.827 55.000 4.18 0.00 0.00 2.75
127 136 4.025401 CTTTGTCGGGTGTGCGCC 62.025 66.667 4.18 0.00 0.00 6.53
138 147 7.358683 GCTTATCAACTGCAATTGTTCTTTGTC 60.359 37.037 7.89 0.00 0.00 3.18
184 199 0.447801 CGTGTAGTTGCAGATTGGCC 59.552 55.000 0.00 0.00 0.00 5.36
185 200 0.179189 GCGTGTAGTTGCAGATTGGC 60.179 55.000 0.00 0.00 0.00 4.52
186 201 1.135972 GTGCGTGTAGTTGCAGATTGG 60.136 52.381 0.00 0.00 42.68 3.16
187 202 1.462378 CGTGCGTGTAGTTGCAGATTG 60.462 52.381 0.00 0.00 42.68 2.67
188 203 0.790207 CGTGCGTGTAGTTGCAGATT 59.210 50.000 0.00 0.00 42.68 2.40
189 204 1.626654 GCGTGCGTGTAGTTGCAGAT 61.627 55.000 0.00 0.00 42.68 2.90
190 205 2.307309 GCGTGCGTGTAGTTGCAGA 61.307 57.895 0.00 0.00 42.68 4.26
191 206 2.170985 GCGTGCGTGTAGTTGCAG 59.829 61.111 0.00 0.00 42.68 4.41
192 207 2.423290 TAGGCGTGCGTGTAGTTGCA 62.423 55.000 0.00 0.00 39.13 4.08
193 208 1.683790 CTAGGCGTGCGTGTAGTTGC 61.684 60.000 0.00 0.00 0.00 4.17
194 209 0.388134 ACTAGGCGTGCGTGTAGTTG 60.388 55.000 0.00 0.00 0.00 3.16
195 210 0.316204 AACTAGGCGTGCGTGTAGTT 59.684 50.000 11.93 11.93 32.13 2.24
196 211 0.316204 AAACTAGGCGTGCGTGTAGT 59.684 50.000 0.00 0.00 0.00 2.73
197 212 2.267188 TAAACTAGGCGTGCGTGTAG 57.733 50.000 0.00 0.00 0.00 2.74
198 213 2.721274 TTAAACTAGGCGTGCGTGTA 57.279 45.000 0.00 0.00 0.00 2.90
199 214 1.997606 GATTAAACTAGGCGTGCGTGT 59.002 47.619 0.00 0.00 0.00 4.49
200 215 2.268298 AGATTAAACTAGGCGTGCGTG 58.732 47.619 0.00 0.00 0.00 5.34
201 216 2.667473 AGATTAAACTAGGCGTGCGT 57.333 45.000 0.00 0.00 0.00 5.24
202 217 2.671396 ACAAGATTAAACTAGGCGTGCG 59.329 45.455 0.00 0.00 0.00 5.34
203 218 4.648970 GAACAAGATTAAACTAGGCGTGC 58.351 43.478 0.00 0.00 0.00 5.34
204 219 4.624024 TCGAACAAGATTAAACTAGGCGTG 59.376 41.667 0.00 0.00 0.00 5.34
205 220 4.813027 TCGAACAAGATTAAACTAGGCGT 58.187 39.130 0.00 0.00 0.00 5.68
206 221 4.863131 ACTCGAACAAGATTAAACTAGGCG 59.137 41.667 0.00 0.00 0.00 5.52
207 222 5.004535 CGACTCGAACAAGATTAAACTAGGC 59.995 44.000 0.00 0.00 0.00 3.93
208 223 6.033619 CACGACTCGAACAAGATTAAACTAGG 59.966 42.308 5.20 0.00 0.00 3.02
209 224 6.800408 TCACGACTCGAACAAGATTAAACTAG 59.200 38.462 5.20 0.00 0.00 2.57
210 225 6.671190 TCACGACTCGAACAAGATTAAACTA 58.329 36.000 5.20 0.00 0.00 2.24
211 226 5.526115 TCACGACTCGAACAAGATTAAACT 58.474 37.500 5.20 0.00 0.00 2.66
212 227 5.817616 TCACGACTCGAACAAGATTAAAC 57.182 39.130 5.20 0.00 0.00 2.01
227 242 1.714794 CGCCAGAGAAAATCACGACT 58.285 50.000 0.00 0.00 0.00 4.18
230 245 0.729116 ATGCGCCAGAGAAAATCACG 59.271 50.000 4.18 0.00 0.00 4.35
252 267 5.103771 AGTGGCATTCTCTGAGGGAATAAAT 60.104 40.000 7.34 0.00 32.86 1.40
273 288 4.991687 AGAAAGCCTCTTTACGAGAAAGTG 59.008 41.667 12.21 10.35 42.62 3.16
296 311 1.675310 CTTTCCAGGTGCGGCATCA 60.675 57.895 16.69 0.00 0.00 3.07
309 325 4.341520 ACTCGATACTGGATACACCTTTCC 59.658 45.833 0.00 0.00 46.17 3.13
316 332 6.382441 AGTGCTGAACTCGATACTGGATACA 61.382 44.000 0.00 0.00 38.88 2.29
317 333 4.036971 AGTGCTGAACTCGATACTGGATAC 59.963 45.833 0.00 0.00 31.64 2.24
328 344 1.264288 GGGACAAAAGTGCTGAACTCG 59.736 52.381 0.00 0.00 38.56 4.18
344 360 2.620251 AGCAAAAGCCAAAAAGGGAC 57.380 45.000 0.00 0.00 38.09 4.46
346 362 3.563808 GGTAAAGCAAAAGCCAAAAAGGG 59.436 43.478 0.00 0.00 38.09 3.95
348 364 4.273235 CCAGGTAAAGCAAAAGCCAAAAAG 59.727 41.667 0.00 0.00 0.00 2.27
353 369 2.373335 TCCAGGTAAAGCAAAAGCCA 57.627 45.000 0.00 0.00 0.00 4.75
498 521 4.645535 ACTGTGACATGCTAACAACTCAT 58.354 39.130 0.00 0.00 0.00 2.90
577 604 6.646653 GCTATGTACTGCATGCAAAGTAGATA 59.353 38.462 23.80 23.80 38.47 1.98
685 712 1.399440 CCAATGCCATGTCAGAACTCG 59.601 52.381 0.00 0.00 0.00 4.18
1053 1112 9.722056 CAAGTTATAACTATGAAACCATTCAGC 57.278 33.333 18.31 0.00 42.74 4.26
1153 1212 3.854666 CCTGCACTCCTTATATCGATGG 58.145 50.000 8.54 0.00 0.00 3.51
1307 1366 7.902920 ATTGTTGATGTCTTTTATGGGCTAT 57.097 32.000 0.00 0.00 0.00 2.97
1475 1534 6.376864 TCCACGTCATTATCAAATGTTCCATT 59.623 34.615 0.00 0.00 42.66 3.16
1506 1565 0.526954 CAAGCGATCCAAGCCATTGC 60.527 55.000 0.00 0.00 34.91 3.56
1741 1800 2.611225 AAGAGTTCTCCGGATCATGC 57.389 50.000 3.57 0.00 0.00 4.06
1750 1809 4.065789 ACGACATGGAAAAAGAGTTCTCC 58.934 43.478 0.00 0.00 0.00 3.71
1835 1897 5.173774 TGTGAAACTTTCTCATTGCTCAC 57.826 39.130 3.22 0.00 38.04 3.51
1890 1952 9.495572 CACTAGTCAAGTATCTTTCTCCTTTTT 57.504 33.333 0.00 0.00 35.76 1.94
1895 1957 6.699642 GCATCACTAGTCAAGTATCTTTCTCC 59.300 42.308 0.00 0.00 35.76 3.71
1945 2007 6.785337 TTGAATTGATCAAATGATGGCTCT 57.215 33.333 13.09 0.00 44.94 4.09
2095 2157 1.600013 AGAGTTCTCGATCCGACATCG 59.400 52.381 9.69 9.69 42.38 3.84
2191 2253 1.069049 CCTTTGCCCTGGTCAACTTTG 59.931 52.381 0.00 0.00 0.00 2.77
2195 2257 3.051210 GCCTTTGCCCTGGTCAAC 58.949 61.111 0.00 0.00 0.00 3.18
2299 2361 3.254093 TCACTGTTAGGAGACCCTTCA 57.746 47.619 0.00 0.00 40.78 3.02
2464 2526 1.882989 GAGAAGCAGGTCTCCGCTGT 61.883 60.000 6.07 0.00 38.51 4.40
2517 2579 8.900781 CAGAAGTTGAAACATTATCAGATGGAT 58.099 33.333 0.00 0.00 40.14 3.41
2578 2640 0.529992 GCTCGTGGATTAACCCCTCG 60.530 60.000 11.68 11.68 40.73 4.63
2584 2646 1.009829 CAGCAGGCTCGTGGATTAAC 58.990 55.000 0.00 0.00 0.00 2.01
2958 3022 6.997655 ACAGTCTCATTACAGTGATTCTGAA 58.002 36.000 0.00 0.00 46.27 3.02
2968 3032 9.208022 TCAATAACTGAAACAGTCTCATTACAG 57.792 33.333 4.88 0.00 44.62 2.74
3454 3518 8.386264 AGCTATATTGTTATCTTACTGGGCATT 58.614 33.333 0.00 0.00 0.00 3.56
3468 3532 6.419484 TGCAGCCTTCTAGCTATATTGTTA 57.581 37.500 0.00 0.00 42.61 2.41
3517 3586 1.279496 AGGAGAGCTGGCAATGTACA 58.721 50.000 0.00 0.00 0.00 2.90
4182 4261 0.829333 AGATAGGCCTGCACTGTCTG 59.171 55.000 17.99 0.00 35.47 3.51
4230 4309 1.546923 TGCCTGACAATCATTTGCCAG 59.453 47.619 0.00 0.00 41.48 4.85
4242 4321 2.203832 TCCTCCTGCTGCCTGACA 60.204 61.111 0.00 0.00 0.00 3.58
4245 4324 3.400928 AGCTCCTCCTGCTGCCTG 61.401 66.667 0.00 0.00 39.56 4.85
4272 4351 3.276857 CAGAACCTTGTCATCAGGATGG 58.723 50.000 9.25 0.00 39.24 3.51
4306 4385 9.676861 CATATATATGTCATCACCAAGTTCCAT 57.323 33.333 13.69 0.00 0.00 3.41
4398 4477 1.884444 GACCGACCCTGAGAGTGAC 59.116 63.158 0.00 0.00 0.00 3.67
4415 4494 0.249868 GGCCTACATACATGCAGCGA 60.250 55.000 0.00 0.00 0.00 4.93
4503 4593 5.234329 GCTTACAGCATATACGCTTGAAGAA 59.766 40.000 13.14 0.00 41.38 2.52
4532 4625 2.545106 GCACTTGAAAGGCAACAAATGG 59.455 45.455 0.00 0.00 41.41 3.16
4533 4626 3.001533 GTGCACTTGAAAGGCAACAAATG 59.998 43.478 10.32 0.00 35.20 2.32
4534 4627 3.197265 GTGCACTTGAAAGGCAACAAAT 58.803 40.909 10.32 0.00 35.20 2.32
4546 4639 4.820897 CCTTACTACATCTGTGCACTTGA 58.179 43.478 19.41 16.11 0.00 3.02
4547 4640 3.372206 GCCTTACTACATCTGTGCACTTG 59.628 47.826 19.41 14.86 0.00 3.16
4551 4644 3.007940 ACAAGCCTTACTACATCTGTGCA 59.992 43.478 0.00 0.00 0.00 4.57
4552 4645 3.600388 ACAAGCCTTACTACATCTGTGC 58.400 45.455 0.00 0.00 0.00 4.57
4553 4646 5.237815 TCAACAAGCCTTACTACATCTGTG 58.762 41.667 0.00 0.00 0.00 3.66
4554 4647 5.483685 TCAACAAGCCTTACTACATCTGT 57.516 39.130 0.00 0.00 0.00 3.41
4555 4648 7.041721 TGTATCAACAAGCCTTACTACATCTG 58.958 38.462 0.00 0.00 30.91 2.90
4556 4649 7.124298 TCTGTATCAACAAGCCTTACTACATCT 59.876 37.037 0.00 0.00 34.49 2.90
4557 4650 7.222999 GTCTGTATCAACAAGCCTTACTACATC 59.777 40.741 0.00 0.00 34.49 3.06
4558 4651 7.042335 GTCTGTATCAACAAGCCTTACTACAT 58.958 38.462 0.00 0.00 34.49 2.29
4559 4652 6.395629 GTCTGTATCAACAAGCCTTACTACA 58.604 40.000 0.00 0.00 34.49 2.74
4561 4654 5.647589 CGTCTGTATCAACAAGCCTTACTA 58.352 41.667 0.00 0.00 34.49 1.82
4562 4655 4.495422 CGTCTGTATCAACAAGCCTTACT 58.505 43.478 0.00 0.00 34.49 2.24
4631 5002 8.093927 ACTGTTTCAAAGAAGAAAATTGTCCAA 58.906 29.630 0.00 0.00 39.05 3.53
4673 5044 7.345691 TCAAATTTCTACTATCAATCCCAGCA 58.654 34.615 0.00 0.00 0.00 4.41
4675 5046 9.565090 TGATCAAATTTCTACTATCAATCCCAG 57.435 33.333 0.00 0.00 0.00 4.45
4686 5057 4.080863 AGGCGGAGTGATCAAATTTCTACT 60.081 41.667 0.00 0.00 0.00 2.57
4702 5073 2.802787 AAACATATCTCGAGGCGGAG 57.197 50.000 13.56 2.04 35.32 4.63
4729 5100 2.365941 GGAGGGAGTATAGAACAGTGGC 59.634 54.545 0.00 0.00 0.00 5.01
4738 5131 4.295141 ACTCGAGATGGAGGGAGTATAG 57.705 50.000 21.68 0.00 37.94 1.31
4743 5136 2.938838 AGTTACTCGAGATGGAGGGAG 58.061 52.381 21.68 0.00 38.39 4.30
4745 5138 2.761208 ACAAGTTACTCGAGATGGAGGG 59.239 50.000 21.68 5.33 38.39 4.30
4747 5140 3.686128 CGACAAGTTACTCGAGATGGAG 58.314 50.000 21.68 6.71 39.97 3.86
4748 5141 2.159421 GCGACAAGTTACTCGAGATGGA 60.159 50.000 21.68 0.00 31.24 3.41
4751 5144 2.747989 TGAGCGACAAGTTACTCGAGAT 59.252 45.455 21.68 6.08 31.24 2.75
4752 5145 2.148768 TGAGCGACAAGTTACTCGAGA 58.851 47.619 21.68 0.00 31.24 4.04
4754 5147 3.358707 TTTGAGCGACAAGTTACTCGA 57.641 42.857 6.36 0.00 39.77 4.04
4755 5148 3.673338 TCATTTGAGCGACAAGTTACTCG 59.327 43.478 0.00 0.00 39.77 4.18
4756 5149 5.591643 TTCATTTGAGCGACAAGTTACTC 57.408 39.130 0.00 0.00 39.77 2.59
4757 5150 5.470098 ACATTCATTTGAGCGACAAGTTACT 59.530 36.000 0.00 0.00 39.77 2.24
4758 5151 5.689819 ACATTCATTTGAGCGACAAGTTAC 58.310 37.500 0.00 0.00 39.77 2.50
4759 5152 5.940192 ACATTCATTTGAGCGACAAGTTA 57.060 34.783 0.00 0.00 39.77 2.24
4760 5153 4.836125 ACATTCATTTGAGCGACAAGTT 57.164 36.364 0.00 0.00 39.77 2.66
4762 5155 6.355397 AGATACATTCATTTGAGCGACAAG 57.645 37.500 0.00 0.00 39.77 3.16
4764 5157 5.463392 GCTAGATACATTCATTTGAGCGACA 59.537 40.000 0.00 0.00 0.00 4.35
4765 5158 5.463392 TGCTAGATACATTCATTTGAGCGAC 59.537 40.000 0.00 0.00 0.00 5.19
4766 5159 5.600696 TGCTAGATACATTCATTTGAGCGA 58.399 37.500 0.00 0.00 0.00 4.93
4767 5160 5.912360 TGCTAGATACATTCATTTGAGCG 57.088 39.130 0.00 0.00 0.00 5.03
4787 5180 8.749499 GTGCTAGATACATTCATTTTTCAATGC 58.251 33.333 0.00 0.00 39.90 3.56
4817 5210 9.832445 GTTCAAATGGATCTATCTACCACTAAA 57.168 33.333 0.00 0.00 36.49 1.85
4818 5211 8.141909 CGTTCAAATGGATCTATCTACCACTAA 58.858 37.037 0.00 0.00 36.49 2.24
4819 5212 7.504574 TCGTTCAAATGGATCTATCTACCACTA 59.495 37.037 0.00 0.00 36.49 2.74
4820 5213 6.323996 TCGTTCAAATGGATCTATCTACCACT 59.676 38.462 0.00 0.00 36.49 4.00
4821 5214 6.421202 GTCGTTCAAATGGATCTATCTACCAC 59.579 42.308 0.00 0.00 36.49 4.16
4822 5215 6.097696 TGTCGTTCAAATGGATCTATCTACCA 59.902 38.462 0.00 0.00 38.09 3.25
4823 5216 6.513180 TGTCGTTCAAATGGATCTATCTACC 58.487 40.000 0.00 0.00 0.00 3.18
4824 5217 7.707035 ACTTGTCGTTCAAATGGATCTATCTAC 59.293 37.037 0.00 0.00 35.48 2.59
4825 5218 7.782049 ACTTGTCGTTCAAATGGATCTATCTA 58.218 34.615 0.00 0.00 35.48 1.98
4826 5219 6.644347 ACTTGTCGTTCAAATGGATCTATCT 58.356 36.000 0.00 0.00 35.48 1.98
4827 5220 6.910536 ACTTGTCGTTCAAATGGATCTATC 57.089 37.500 0.00 0.00 35.48 2.08
4828 5221 8.964476 AATACTTGTCGTTCAAATGGATCTAT 57.036 30.769 0.00 0.00 35.48 1.98
4829 5222 8.786826 AAATACTTGTCGTTCAAATGGATCTA 57.213 30.769 0.00 0.00 35.48 1.98
4830 5223 7.148239 GGAAATACTTGTCGTTCAAATGGATCT 60.148 37.037 0.00 0.00 35.48 2.75
4831 5224 6.967199 GGAAATACTTGTCGTTCAAATGGATC 59.033 38.462 0.00 0.00 35.48 3.36
4832 5225 6.403200 CGGAAATACTTGTCGTTCAAATGGAT 60.403 38.462 0.00 0.00 35.48 3.41
4833 5226 5.106869 CGGAAATACTTGTCGTTCAAATGGA 60.107 40.000 0.00 0.00 35.48 3.41
4834 5227 5.086058 CGGAAATACTTGTCGTTCAAATGG 58.914 41.667 0.00 0.00 35.48 3.16
4835 5228 5.086058 CCGGAAATACTTGTCGTTCAAATG 58.914 41.667 0.00 0.00 35.48 2.32
4836 5229 4.998672 TCCGGAAATACTTGTCGTTCAAAT 59.001 37.500 0.00 0.00 35.48 2.32
4837 5230 4.211794 GTCCGGAAATACTTGTCGTTCAAA 59.788 41.667 5.23 0.00 35.48 2.69
4838 5231 3.742369 GTCCGGAAATACTTGTCGTTCAA 59.258 43.478 5.23 0.00 34.61 2.69
4839 5232 3.319755 GTCCGGAAATACTTGTCGTTCA 58.680 45.455 5.23 0.00 0.00 3.18
4840 5233 2.343544 CGTCCGGAAATACTTGTCGTTC 59.656 50.000 5.23 0.00 0.00 3.95
4841 5234 2.331194 CGTCCGGAAATACTTGTCGTT 58.669 47.619 5.23 0.00 0.00 3.85
4842 5235 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
4843 5236 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4844 5237 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4845 5238 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4846 5239 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4847 5240 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4848 5241 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4849 5242 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4850 5243 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4851 5244 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4852 5245 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4853 5246 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
4854 5247 0.846015 TAATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
4855 5248 1.339291 GTTAATACTCCCTCCGTCCGG 59.661 57.143 0.00 0.00 0.00 5.14
4856 5249 2.305009 AGTTAATACTCCCTCCGTCCG 58.695 52.381 0.00 0.00 0.00 4.79
4875 5268 7.492524 TGAGGACATGTAAATACTCTGCTAAG 58.507 38.462 0.00 0.00 0.00 2.18
4915 5308 7.554211 ACTACCTTGTATAGTTTCCTGTTAGC 58.446 38.462 0.00 0.00 28.03 3.09
4936 5329 7.168469 GCGATTCCATCTCTTCTTTCTAACTAC 59.832 40.741 0.00 0.00 0.00 2.73
4956 5355 4.207841 GCTTGCTCAATTTATTGGCGATTC 59.792 41.667 0.00 0.00 38.30 2.52
4960 5359 3.111098 GAGCTTGCTCAATTTATTGGCG 58.889 45.455 16.71 0.00 38.30 5.69
4972 5371 3.669536 AGAGTAAAACCAGAGCTTGCTC 58.330 45.455 14.16 14.16 33.50 4.26
4995 5394 3.030291 CTGACCTAGACATCCTCAAGCT 58.970 50.000 0.00 0.00 0.00 3.74
5109 5509 7.279090 GCGCCTTTTAATGGGTTTAATTGTTAT 59.721 33.333 0.00 0.00 30.03 1.89
5110 5510 6.590677 GCGCCTTTTAATGGGTTTAATTGTTA 59.409 34.615 0.00 0.00 30.03 2.41
5112 5512 4.932799 GCGCCTTTTAATGGGTTTAATTGT 59.067 37.500 0.00 0.00 30.03 2.71
5113 5513 5.175127 AGCGCCTTTTAATGGGTTTAATTG 58.825 37.500 2.29 0.00 30.03 2.32
5115 5515 5.889289 TCTAGCGCCTTTTAATGGGTTTAAT 59.111 36.000 2.29 0.00 30.03 1.40
5116 5516 5.254901 TCTAGCGCCTTTTAATGGGTTTAA 58.745 37.500 2.29 0.00 0.00 1.52
5117 5517 4.846040 TCTAGCGCCTTTTAATGGGTTTA 58.154 39.130 2.29 0.00 0.00 2.01
5118 5518 3.692690 TCTAGCGCCTTTTAATGGGTTT 58.307 40.909 2.29 0.00 0.00 3.27
5119 5519 3.359695 TCTAGCGCCTTTTAATGGGTT 57.640 42.857 2.29 0.00 0.00 4.11
5120 5520 3.359695 TTCTAGCGCCTTTTAATGGGT 57.640 42.857 2.29 0.00 0.00 4.51
5121 5521 3.004734 CCATTCTAGCGCCTTTTAATGGG 59.995 47.826 20.99 4.91 39.65 4.00
5122 5522 3.632145 ACCATTCTAGCGCCTTTTAATGG 59.368 43.478 24.40 24.40 45.67 3.16
5123 5523 4.498009 CCACCATTCTAGCGCCTTTTAATG 60.498 45.833 2.29 7.63 0.00 1.90
5124 5524 3.632145 CCACCATTCTAGCGCCTTTTAAT 59.368 43.478 2.29 0.00 0.00 1.40
5125 5525 3.013921 CCACCATTCTAGCGCCTTTTAA 58.986 45.455 2.29 0.00 0.00 1.52
5126 5526 2.639065 CCACCATTCTAGCGCCTTTTA 58.361 47.619 2.29 0.00 0.00 1.52
5127 5527 1.463674 CCACCATTCTAGCGCCTTTT 58.536 50.000 2.29 0.00 0.00 2.27
5128 5528 1.032114 GCCACCATTCTAGCGCCTTT 61.032 55.000 2.29 0.00 0.00 3.11
5129 5529 1.452108 GCCACCATTCTAGCGCCTT 60.452 57.895 2.29 0.00 0.00 4.35
5130 5530 2.190578 GCCACCATTCTAGCGCCT 59.809 61.111 2.29 0.00 0.00 5.52
5131 5531 2.902343 GGCCACCATTCTAGCGCC 60.902 66.667 2.29 0.00 0.00 6.53
5132 5532 1.748879 TTGGCCACCATTCTAGCGC 60.749 57.895 3.88 0.00 31.53 5.92
5133 5533 1.376609 GGTTGGCCACCATTCTAGCG 61.377 60.000 3.88 0.00 46.42 4.26
5134 5534 2.493547 GGTTGGCCACCATTCTAGC 58.506 57.895 3.88 0.00 46.42 3.42
5162 5562 2.677524 AACCAGCATGCGCCACAT 60.678 55.556 13.01 0.00 40.66 3.21
5163 5563 3.672447 CAACCAGCATGCGCCACA 61.672 61.111 13.01 0.00 39.83 4.17
5164 5564 4.424566 CCAACCAGCATGCGCCAC 62.425 66.667 13.01 0.00 39.83 5.01
5165 5565 4.972733 ACCAACCAGCATGCGCCA 62.973 61.111 13.01 0.00 39.83 5.69
5166 5566 4.120331 GACCAACCAGCATGCGCC 62.120 66.667 13.01 0.00 39.83 6.53
5167 5567 3.364441 TGACCAACCAGCATGCGC 61.364 61.111 13.01 0.00 38.99 6.09
5168 5568 2.191354 CTGTGACCAACCAGCATGCG 62.191 60.000 13.01 7.31 31.97 4.73
5169 5569 1.174712 ACTGTGACCAACCAGCATGC 61.175 55.000 10.51 10.51 31.97 4.06
5170 5570 0.594602 CACTGTGACCAACCAGCATG 59.405 55.000 0.32 0.00 0.00 4.06
5171 5571 0.473755 TCACTGTGACCAACCAGCAT 59.526 50.000 6.36 0.00 0.00 3.79
5172 5572 0.179048 CTCACTGTGACCAACCAGCA 60.179 55.000 6.36 0.00 0.00 4.41
5173 5573 0.106708 TCTCACTGTGACCAACCAGC 59.893 55.000 6.36 0.00 0.00 4.85
5174 5574 2.620251 TTCTCACTGTGACCAACCAG 57.380 50.000 6.36 0.00 0.00 4.00
5175 5575 2.238646 ACTTTCTCACTGTGACCAACCA 59.761 45.455 6.36 0.00 0.00 3.67
5176 5576 2.919228 ACTTTCTCACTGTGACCAACC 58.081 47.619 6.36 0.00 0.00 3.77
5177 5577 6.619801 AAATACTTTCTCACTGTGACCAAC 57.380 37.500 6.36 0.00 0.00 3.77
5178 5578 7.639113 AAAAATACTTTCTCACTGTGACCAA 57.361 32.000 6.36 0.00 0.00 3.67
5260 5660 9.936759 ACACAACAATCTTAAAAGGAAAAAGAA 57.063 25.926 0.00 0.00 33.26 2.52
5261 5661 9.364989 CACACAACAATCTTAAAAGGAAAAAGA 57.635 29.630 0.00 0.00 34.00 2.52
5262 5662 8.116136 GCACACAACAATCTTAAAAGGAAAAAG 58.884 33.333 0.00 0.00 0.00 2.27
5263 5663 7.604164 TGCACACAACAATCTTAAAAGGAAAAA 59.396 29.630 0.00 0.00 0.00 1.94
5264 5664 7.064016 GTGCACACAACAATCTTAAAAGGAAAA 59.936 33.333 13.17 0.00 0.00 2.29
5265 5665 6.533367 GTGCACACAACAATCTTAAAAGGAAA 59.467 34.615 13.17 0.00 0.00 3.13
5266 5666 6.039616 GTGCACACAACAATCTTAAAAGGAA 58.960 36.000 13.17 0.00 0.00 3.36
5267 5667 5.587289 GTGCACACAACAATCTTAAAAGGA 58.413 37.500 13.17 0.00 0.00 3.36
5268 5668 4.440758 CGTGCACACAACAATCTTAAAAGG 59.559 41.667 18.64 0.00 0.00 3.11
5269 5669 5.034152 ACGTGCACACAACAATCTTAAAAG 58.966 37.500 18.64 0.00 0.00 2.27
5270 5670 4.795795 CACGTGCACACAACAATCTTAAAA 59.204 37.500 18.64 0.00 0.00 1.52
5271 5671 4.095036 TCACGTGCACACAACAATCTTAAA 59.905 37.500 18.64 0.00 0.00 1.52
5272 5672 3.623510 TCACGTGCACACAACAATCTTAA 59.376 39.130 18.64 0.00 0.00 1.85
5273 5673 3.198872 TCACGTGCACACAACAATCTTA 58.801 40.909 18.64 0.00 0.00 2.10
5274 5674 2.013400 TCACGTGCACACAACAATCTT 58.987 42.857 18.64 0.00 0.00 2.40
5275 5675 1.662517 TCACGTGCACACAACAATCT 58.337 45.000 18.64 0.00 0.00 2.40
5276 5676 2.309693 CATCACGTGCACACAACAATC 58.690 47.619 18.64 0.00 0.00 2.67
5277 5677 2.404265 CATCACGTGCACACAACAAT 57.596 45.000 18.64 0.00 0.00 2.71
5278 5678 3.914024 CATCACGTGCACACAACAA 57.086 47.368 18.64 0.00 0.00 2.83
5306 5706 7.174599 CCTCACCATCATGCCAAAAATTAAAAA 59.825 33.333 0.00 0.00 0.00 1.94
5307 5707 6.654161 CCTCACCATCATGCCAAAAATTAAAA 59.346 34.615 0.00 0.00 0.00 1.52
5308 5708 6.171921 CCTCACCATCATGCCAAAAATTAAA 58.828 36.000 0.00 0.00 0.00 1.52
5309 5709 5.248020 ACCTCACCATCATGCCAAAAATTAA 59.752 36.000 0.00 0.00 0.00 1.40
5310 5710 4.776837 ACCTCACCATCATGCCAAAAATTA 59.223 37.500 0.00 0.00 0.00 1.40
5311 5711 3.583966 ACCTCACCATCATGCCAAAAATT 59.416 39.130 0.00 0.00 0.00 1.82
5312 5712 3.055675 CACCTCACCATCATGCCAAAAAT 60.056 43.478 0.00 0.00 0.00 1.82
5313 5713 2.299582 CACCTCACCATCATGCCAAAAA 59.700 45.455 0.00 0.00 0.00 1.94
5314 5714 1.894466 CACCTCACCATCATGCCAAAA 59.106 47.619 0.00 0.00 0.00 2.44
5315 5715 1.548081 CACCTCACCATCATGCCAAA 58.452 50.000 0.00 0.00 0.00 3.28
5316 5716 0.966875 GCACCTCACCATCATGCCAA 60.967 55.000 0.00 0.00 0.00 4.52
5317 5717 1.378911 GCACCTCACCATCATGCCA 60.379 57.895 0.00 0.00 0.00 4.92
5318 5718 2.475466 CGCACCTCACCATCATGCC 61.475 63.158 0.00 0.00 32.55 4.40
5319 5719 3.104766 CGCACCTCACCATCATGC 58.895 61.111 0.00 0.00 0.00 4.06
5320 5720 2.816360 CGCGCACCTCACCATCATG 61.816 63.158 8.75 0.00 0.00 3.07
5321 5721 2.512286 CGCGCACCTCACCATCAT 60.512 61.111 8.75 0.00 0.00 2.45
5324 5724 4.783621 ATGCGCGCACCTCACCAT 62.784 61.111 39.05 15.90 0.00 3.55
5327 5727 2.568935 GAAAGATGCGCGCACCTCAC 62.569 60.000 39.05 24.80 0.00 3.51
5328 5728 2.358615 AAAGATGCGCGCACCTCA 60.359 55.556 39.05 14.49 0.00 3.86
5329 5729 2.029904 GAGAAAGATGCGCGCACCTC 62.030 60.000 39.05 30.31 0.00 3.85
5330 5730 2.046892 AGAAAGATGCGCGCACCT 60.047 55.556 39.05 32.68 0.00 4.00
5331 5731 2.029904 GAGAGAAAGATGCGCGCACC 62.030 60.000 39.05 30.45 0.00 5.01
5332 5732 1.346538 GAGAGAAAGATGCGCGCAC 59.653 57.895 39.05 28.32 0.00 5.34
5333 5733 0.670239 TTGAGAGAAAGATGCGCGCA 60.670 50.000 38.27 38.27 0.00 6.09
5334 5734 0.026027 CTTGAGAGAAAGATGCGCGC 59.974 55.000 27.26 27.26 0.00 6.86
5335 5735 0.026027 GCTTGAGAGAAAGATGCGCG 59.974 55.000 0.00 0.00 0.00 6.86
5336 5736 0.026027 CGCTTGAGAGAAAGATGCGC 59.974 55.000 0.00 0.00 35.77 6.09
5337 5737 0.649475 CCGCTTGAGAGAAAGATGCG 59.351 55.000 0.00 0.00 41.30 4.73
5338 5738 0.376502 GCCGCTTGAGAGAAAGATGC 59.623 55.000 0.00 0.00 0.00 3.91
5339 5739 1.012841 GGCCGCTTGAGAGAAAGATG 58.987 55.000 0.00 0.00 0.00 2.90
5340 5740 0.107459 GGGCCGCTTGAGAGAAAGAT 60.107 55.000 0.00 0.00 0.00 2.40
5341 5741 1.296715 GGGCCGCTTGAGAGAAAGA 59.703 57.895 0.00 0.00 0.00 2.52
5342 5742 1.003355 TGGGCCGCTTGAGAGAAAG 60.003 57.895 0.00 0.00 0.00 2.62
5343 5743 1.302511 GTGGGCCGCTTGAGAGAAA 60.303 57.895 10.52 0.00 0.00 2.52
5344 5744 2.050836 TTGTGGGCCGCTTGAGAGAA 62.051 55.000 19.39 0.00 0.00 2.87
5345 5745 1.841302 ATTGTGGGCCGCTTGAGAGA 61.841 55.000 19.39 0.00 0.00 3.10
5346 5746 1.377725 ATTGTGGGCCGCTTGAGAG 60.378 57.895 19.39 0.00 0.00 3.20
5347 5747 1.675310 CATTGTGGGCCGCTTGAGA 60.675 57.895 19.39 0.00 0.00 3.27
5348 5748 2.703798 CCATTGTGGGCCGCTTGAG 61.704 63.158 19.39 5.59 32.67 3.02
5349 5749 2.676121 CCATTGTGGGCCGCTTGA 60.676 61.111 19.39 4.73 32.67 3.02
5366 5766 4.796495 CTAGTGGTTGGGGCCCGC 62.796 72.222 19.83 13.46 0.00 6.13
5367 5767 3.325201 GACTAGTGGTTGGGGCCCG 62.325 68.421 19.83 2.78 0.00 6.13
5368 5768 1.911702 GAGACTAGTGGTTGGGGCCC 61.912 65.000 18.17 18.17 0.00 5.80
5369 5769 0.910088 AGAGACTAGTGGTTGGGGCC 60.910 60.000 0.00 0.00 0.00 5.80
5370 5770 0.984995 AAGAGACTAGTGGTTGGGGC 59.015 55.000 0.00 0.00 0.00 5.80
5371 5771 2.637872 TGAAAGAGACTAGTGGTTGGGG 59.362 50.000 0.00 0.00 0.00 4.96
5372 5772 4.040461 TCTTGAAAGAGACTAGTGGTTGGG 59.960 45.833 0.00 0.00 0.00 4.12
5373 5773 5.215252 TCTTGAAAGAGACTAGTGGTTGG 57.785 43.478 0.00 0.00 0.00 3.77
5386 5786 1.283029 CATCAGCCCCCTCTTGAAAGA 59.717 52.381 0.00 0.00 0.00 2.52
5387 5787 1.760192 CATCAGCCCCCTCTTGAAAG 58.240 55.000 0.00 0.00 0.00 2.62
5388 5788 0.323725 GCATCAGCCCCCTCTTGAAA 60.324 55.000 0.00 0.00 33.58 2.69
5389 5789 1.304282 GCATCAGCCCCCTCTTGAA 59.696 57.895 0.00 0.00 33.58 2.69
5390 5790 3.001514 GCATCAGCCCCCTCTTGA 58.998 61.111 0.00 0.00 33.58 3.02
5400 5800 1.551883 ACCAAAAGGAATGGCATCAGC 59.448 47.619 0.00 0.00 41.89 4.26
5401 5801 2.167075 GGACCAAAAGGAATGGCATCAG 59.833 50.000 0.00 0.00 41.89 2.90
5402 5802 2.178580 GGACCAAAAGGAATGGCATCA 58.821 47.619 0.00 0.00 41.89 3.07
5403 5803 2.178580 TGGACCAAAAGGAATGGCATC 58.821 47.619 0.00 0.00 41.89 3.91
5404 5804 2.323999 TGGACCAAAAGGAATGGCAT 57.676 45.000 0.00 0.00 41.89 4.40
5405 5805 2.094100 TTGGACCAAAAGGAATGGCA 57.906 45.000 3.84 0.00 41.89 4.92
5406 5806 3.599343 GAATTGGACCAAAAGGAATGGC 58.401 45.455 11.82 0.00 41.89 4.40
5407 5807 3.368323 CGGAATTGGACCAAAAGGAATGG 60.368 47.826 11.82 0.00 43.84 3.16
5408 5808 3.258123 ACGGAATTGGACCAAAAGGAATG 59.742 43.478 11.82 0.68 0.00 2.67
5409 5809 3.506398 ACGGAATTGGACCAAAAGGAAT 58.494 40.909 11.82 0.00 0.00 3.01
5410 5810 2.888414 GACGGAATTGGACCAAAAGGAA 59.112 45.455 11.82 0.00 0.00 3.36
5411 5811 2.510613 GACGGAATTGGACCAAAAGGA 58.489 47.619 11.82 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.