Multiple sequence alignment - TraesCS4A01G280800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G280800 chr4A 100.000 5546 0 0 1 5546 589107224 589112769 0.000000e+00 10242.0
1 TraesCS4A01G280800 chr4B 91.441 2325 116 19 504 2757 23822986 23820674 0.000000e+00 3114.0
2 TraesCS4A01G280800 chr4B 90.366 1640 88 27 3441 5056 23820004 23818411 0.000000e+00 2089.0
3 TraesCS4A01G280800 chr4B 91.284 436 27 3 2806 3230 23820599 23820164 8.010000e-163 584.0
4 TraesCS4A01G280800 chr4B 85.606 264 30 6 5290 5546 602778558 602778296 2.550000e-68 270.0
5 TraesCS4A01G280800 chr4B 97.143 35 1 0 5230 5264 23818264 23818230 6.000000e-05 60.2
6 TraesCS4A01G280800 chr4B 100.000 29 0 0 5189 5217 23818275 23818247 3.000000e-03 54.7
7 TraesCS4A01G280800 chr4D 93.775 1735 66 12 1382 3075 13200110 13198377 0.000000e+00 2567.0
8 TraesCS4A01G280800 chr4D 90.561 1462 88 18 3312 4729 13198128 13196673 0.000000e+00 1890.0
9 TraesCS4A01G280800 chr4D 87.979 965 39 31 7 933 13201488 13200563 0.000000e+00 1068.0
10 TraesCS4A01G280800 chr4D 95.556 405 10 4 989 1389 13200547 13200147 4.680000e-180 641.0
11 TraesCS4A01G280800 chr4D 98.039 153 3 0 3078 3230 13198279 13198127 3.290000e-67 267.0
12 TraesCS4A01G280800 chr2B 91.473 774 38 6 1382 2130 17040434 17041204 0.000000e+00 1038.0
13 TraesCS4A01G280800 chr2B 94.502 582 22 3 818 1389 17039816 17040397 0.000000e+00 889.0
14 TraesCS4A01G280800 chr7D 89.272 261 22 6 5290 5546 553073494 553073236 6.930000e-84 322.0
15 TraesCS4A01G280800 chr7D 85.333 75 11 0 1282 1356 272601465 272601391 1.660000e-10 78.7
16 TraesCS4A01G280800 chr3D 88.806 268 19 7 5289 5546 596658084 596657818 8.970000e-83 318.0
17 TraesCS4A01G280800 chr3D 86.792 265 27 5 5290 5546 156198148 156198412 7.030000e-74 289.0
18 TraesCS4A01G280800 chr3D 92.308 104 8 0 3215 3318 6948863 6948760 1.240000e-31 148.0
19 TraesCS4A01G280800 chr5A 88.550 262 23 7 5290 5546 678262930 678263189 1.500000e-80 311.0
20 TraesCS4A01G280800 chr5A 88.258 264 21 9 5290 5546 523931377 523931117 1.940000e-79 307.0
21 TraesCS4A01G280800 chr1D 88.372 258 21 7 5286 5535 475956207 475956463 9.030000e-78 302.0
22 TraesCS4A01G280800 chr3A 87.356 261 26 5 5290 5546 22802933 22803190 5.430000e-75 292.0
23 TraesCS4A01G280800 chr3A 93.878 98 5 1 3216 3313 638994344 638994440 4.480000e-31 147.0
24 TraesCS4A01G280800 chr6A 86.038 265 28 7 5290 5546 419652239 419651976 5.470000e-70 276.0
25 TraesCS4A01G280800 chr5B 96.842 95 3 0 3228 3322 56586041 56585947 5.750000e-35 159.0
26 TraesCS4A01G280800 chr7A 97.778 90 2 0 3227 3316 689269374 689269285 7.440000e-34 156.0
27 TraesCS4A01G280800 chr7A 92.381 105 6 2 3213 3317 20733027 20732925 1.240000e-31 148.0
28 TraesCS4A01G280800 chr7A 85.333 75 11 0 1282 1356 306347940 306347866 1.660000e-10 78.7
29 TraesCS4A01G280800 chr6B 94.000 100 6 0 3224 3323 509544326 509544425 9.620000e-33 152.0
30 TraesCS4A01G280800 chr2A 94.059 101 5 1 3217 3317 597850409 597850508 9.620000e-33 152.0
31 TraesCS4A01G280800 chr1B 90.351 114 8 3 3219 3329 681293957 681293844 4.480000e-31 147.0
32 TraesCS4A01G280800 chr1A 93.814 97 4 2 3217 3313 548742995 548743089 1.610000e-30 145.0
33 TraesCS4A01G280800 chr7B 84.146 82 13 0 1279 1360 265430596 265430677 4.610000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G280800 chr4A 589107224 589112769 5545 False 10242.00 10242 100.0000 1 5546 1 chr4A.!!$F1 5545
1 TraesCS4A01G280800 chr4B 23818230 23822986 4756 True 1180.38 3114 94.0468 504 5264 5 chr4B.!!$R2 4760
2 TraesCS4A01G280800 chr4D 13196673 13201488 4815 True 1286.60 2567 93.1820 7 4729 5 chr4D.!!$R1 4722
3 TraesCS4A01G280800 chr2B 17039816 17041204 1388 False 963.50 1038 92.9875 818 2130 2 chr2B.!!$F1 1312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 480 0.028110 CGCGGCTCCAATAAAAGCTC 59.972 55.000 0.00 0.0 38.58 4.09 F
810 869 0.678366 TGTATTTTGTGCCGCCCGAT 60.678 50.000 0.00 0.0 0.00 4.18 F
1920 2073 1.079405 GGAGACAATGTCGCCGGAA 60.079 57.895 19.71 0.0 42.04 4.30 F
3016 3227 0.328258 AGTTGCGCATAGAAAGGGGT 59.672 50.000 12.75 0.0 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 1692 0.105246 AGGATCTCGGAGCCCTTGAT 60.105 55.000 11.43 0.0 39.17 2.57 R
2034 2187 0.107116 TCTCAGGTACTCTCCGAGCC 60.107 60.000 0.00 0.0 34.60 4.70 R
3496 3845 0.592637 TGCTTGCACCAATCTTCACG 59.407 50.000 0.00 0.0 0.00 4.35 R
4835 5221 1.273327 GCTTTGGCATTAACAGGCACT 59.727 47.619 5.61 0.0 41.56 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.188786 CCGCAGCAGTTACTCGCC 61.189 66.667 0.00 0.00 0.00 5.54
24 25 0.900647 AGCAGTTACTCGCCTGTCCT 60.901 55.000 3.84 0.00 0.00 3.85
84 86 2.778386 GCTCGATAAAAGTTCGCAATGC 59.222 45.455 0.00 0.00 36.56 3.56
85 87 3.727673 GCTCGATAAAAGTTCGCAATGCA 60.728 43.478 5.91 0.00 36.56 3.96
131 139 1.153469 CTTCCTTCCTCGGCAGCTC 60.153 63.158 0.00 0.00 0.00 4.09
132 140 1.610673 TTCCTTCCTCGGCAGCTCT 60.611 57.895 0.00 0.00 0.00 4.09
135 144 4.135153 TTCCTCGGCAGCTCTCGC 62.135 66.667 0.00 0.00 0.00 5.03
161 170 4.816984 TCCCCCTCCGTCTCGCTC 62.817 72.222 0.00 0.00 0.00 5.03
183 192 2.664851 TGTTGCCCTTCTCGTGCG 60.665 61.111 0.00 0.00 0.00 5.34
236 264 1.678970 CTTTTCCCCGGGCTTGGAG 60.679 63.158 17.73 4.75 30.91 3.86
335 363 4.390264 GAGCCACCCTCTTATTGTTATCC 58.610 47.826 0.00 0.00 37.60 2.59
352 380 3.791749 CCCCCTACTCCTCCTCCT 58.208 66.667 0.00 0.00 0.00 3.69
358 386 1.529744 CTACTCCTCCTCCTCCTCCT 58.470 60.000 0.00 0.00 0.00 3.69
365 393 2.612251 CTCCTCCTCCTCCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
366 394 2.204624 TCCTCCTCCTCCTCCCCA 60.205 66.667 0.00 0.00 0.00 4.96
367 395 1.630333 TCCTCCTCCTCCTCCCCAT 60.630 63.158 0.00 0.00 0.00 4.00
368 396 1.152139 CCTCCTCCTCCTCCCCATC 60.152 68.421 0.00 0.00 0.00 3.51
369 397 1.673928 CCTCCTCCTCCTCCCCATCT 61.674 65.000 0.00 0.00 0.00 2.90
370 398 0.178935 CTCCTCCTCCTCCCCATCTC 60.179 65.000 0.00 0.00 0.00 2.75
371 399 0.631998 TCCTCCTCCTCCCCATCTCT 60.632 60.000 0.00 0.00 0.00 3.10
372 400 0.178935 CCTCCTCCTCCCCATCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
373 401 0.859760 CTCCTCCTCCCCATCTCTCT 59.140 60.000 0.00 0.00 0.00 3.10
374 402 0.856982 TCCTCCTCCCCATCTCTCTC 59.143 60.000 0.00 0.00 0.00 3.20
386 414 3.181430 CCATCTCTCTCCTCTCTCATCCA 60.181 52.174 0.00 0.00 0.00 3.41
390 418 0.633378 TCTCCTCTCTCATCCAGCCA 59.367 55.000 0.00 0.00 0.00 4.75
392 420 1.039785 TCCTCTCTCATCCAGCCACG 61.040 60.000 0.00 0.00 0.00 4.94
399 427 4.115199 ATCCAGCCACGCTTCCCC 62.115 66.667 0.00 0.00 36.40 4.81
432 460 2.328099 CCTTGCTGTCCTCCGCAAC 61.328 63.158 0.00 0.00 40.84 4.17
452 480 0.028110 CGCGGCTCCAATAAAAGCTC 59.972 55.000 0.00 0.00 38.58 4.09
458 486 1.064654 CTCCAATAAAAGCTCCTGCGC 59.935 52.381 0.00 0.00 45.42 6.09
488 516 2.743718 CACTTCAGTCGCCCACCT 59.256 61.111 0.00 0.00 0.00 4.00
491 519 2.203788 TTCAGTCGCCCACCTCCT 60.204 61.111 0.00 0.00 0.00 3.69
501 530 3.052082 CACCTCCTGTGCGGCAAG 61.052 66.667 3.23 4.73 38.34 4.01
534 573 2.436824 GCCGGAGCCTTCAGGTTC 60.437 66.667 5.05 1.08 43.68 3.62
535 574 3.068881 CCGGAGCCTTCAGGTTCA 58.931 61.111 11.43 0.00 45.85 3.18
536 575 1.078848 CCGGAGCCTTCAGGTTCAG 60.079 63.158 11.43 7.35 45.85 3.02
537 576 1.743252 CGGAGCCTTCAGGTTCAGC 60.743 63.158 11.43 0.00 45.85 4.26
538 577 1.377856 GGAGCCTTCAGGTTCAGCC 60.378 63.158 11.43 0.00 45.85 4.85
539 578 1.377856 GAGCCTTCAGGTTCAGCCC 60.378 63.158 4.89 0.00 43.82 5.19
568 607 1.271982 CCTCTATCCAGCGCCTACCTA 60.272 57.143 2.29 0.00 0.00 3.08
572 611 1.749334 ATCCAGCGCCTACCTAGCAC 61.749 60.000 2.29 0.00 0.00 4.40
573 612 2.107141 CAGCGCCTACCTAGCACC 59.893 66.667 2.29 0.00 0.00 5.01
575 614 2.107141 GCGCCTACCTAGCACCAG 59.893 66.667 0.00 0.00 0.00 4.00
628 685 0.829333 TGCTCTCCTCTGATTGCTCC 59.171 55.000 0.00 0.00 0.00 4.70
632 689 1.836166 TCTCCTCTGATTGCTCCAAGG 59.164 52.381 0.00 0.00 0.00 3.61
683 742 0.839946 CCGGGTGATTCCTCCATTCT 59.160 55.000 0.00 0.00 36.25 2.40
810 869 0.678366 TGTATTTTGTGCCGCCCGAT 60.678 50.000 0.00 0.00 0.00 4.18
938 1003 1.153647 CCGCGATCTTGCAGGTGTA 60.154 57.895 8.23 0.00 34.15 2.90
967 1032 3.329889 TCTGCCATTGCCGAGGGT 61.330 61.111 0.00 0.00 36.33 4.34
978 1043 4.400251 CGAGGGTGGGGGAGAGGT 62.400 72.222 0.00 0.00 0.00 3.85
991 1056 2.507324 GAGGTGCTTCGGTCTCGC 60.507 66.667 0.00 0.00 36.13 5.03
1246 1314 2.916716 CAACTTGTGTAATGGCGATTGC 59.083 45.455 3.95 3.23 41.71 3.56
1258 1326 1.856597 GGCGATTGCTTGATTGATTGC 59.143 47.619 4.59 0.00 42.25 3.56
1259 1327 2.480759 GGCGATTGCTTGATTGATTGCT 60.481 45.455 4.59 0.00 42.25 3.91
1260 1328 3.184541 GCGATTGCTTGATTGATTGCTT 58.815 40.909 0.00 0.00 38.39 3.91
1261 1329 3.000078 GCGATTGCTTGATTGATTGCTTG 60.000 43.478 0.00 0.00 38.39 4.01
1262 1330 3.000078 CGATTGCTTGATTGATTGCTTGC 60.000 43.478 0.00 0.00 0.00 4.01
1293 1365 1.349627 GTGCGCAGATGTGATTCGG 59.650 57.895 12.22 0.00 0.00 4.30
1443 1572 1.388547 ACTTTGGCGAGCTTGACAAA 58.611 45.000 29.33 29.33 44.36 2.83
1546 1692 3.792047 CCGACGGCGAGTACGTGA 61.792 66.667 15.16 0.00 45.68 4.35
1632 1778 3.430895 CCATTTGCTCTTGTGAACATTGC 59.569 43.478 0.00 0.00 0.00 3.56
1639 1785 1.962807 CTTGTGAACATTGCCTGGGAA 59.037 47.619 2.20 2.20 0.00 3.97
1713 1866 1.404583 GCAGGTCAATTTCACCATGGC 60.405 52.381 13.04 3.49 36.23 4.40
1771 1924 1.907255 AGGGTAGTACAAGGTTGCCTC 59.093 52.381 2.06 0.00 30.89 4.70
1772 1925 1.405121 GGGTAGTACAAGGTTGCCTCG 60.405 57.143 2.06 0.00 30.89 4.63
1860 2013 4.735132 CCTTCGGTGCCTTCGCGA 62.735 66.667 3.71 3.71 38.08 5.87
1863 2016 3.626680 TTCGGTGCCTTCGCGAGAG 62.627 63.158 9.59 9.99 43.69 3.20
1920 2073 1.079405 GGAGACAATGTCGCCGGAA 60.079 57.895 19.71 0.00 42.04 4.30
2019 2172 1.086696 CCGCAACTCAAACCGATGAT 58.913 50.000 0.00 0.00 0.00 2.45
2034 2187 1.268352 GATGATCTCGGGAGAAGGTCG 59.732 57.143 2.00 0.00 41.36 4.79
2087 2240 1.134877 CCTGAGCACTGATCATGACGT 60.135 52.381 0.00 0.00 0.00 4.34
2088 2241 2.191802 CTGAGCACTGATCATGACGTC 58.808 52.381 9.11 9.11 0.00 4.34
2094 2253 1.133216 ACTGATCATGACGTCCGTGAG 59.867 52.381 20.67 12.69 43.44 3.51
2196 2355 2.937689 ACCCCACTGAGCATGGCT 60.938 61.111 0.00 0.00 43.88 4.75
2274 2433 1.747709 CCAACAGCTTCAGGATCCTG 58.252 55.000 32.60 32.60 44.86 3.86
2419 2578 1.342975 ACAAGCCAAGGTTCCCAAACT 60.343 47.619 0.00 0.00 35.61 2.66
2541 2700 5.717119 AGGAGTATTTTAGTGGGAGCATT 57.283 39.130 0.00 0.00 0.00 3.56
2544 2703 7.816411 AGGAGTATTTTAGTGGGAGCATTATT 58.184 34.615 0.00 0.00 0.00 1.40
2572 2731 1.863662 GACGCAGAGAGACGTTCCCA 61.864 60.000 0.00 0.00 43.71 4.37
2607 2766 1.732809 GTGCTTAAGCGGTCTTCTTCC 59.267 52.381 21.97 0.00 45.83 3.46
2642 2801 4.479158 AGGTAAAATTTCCAGTGCTTCCA 58.521 39.130 0.00 0.00 0.00 3.53
2772 2931 4.836125 AAACAGCACATTAGGTTCAGTG 57.164 40.909 0.00 0.00 35.19 3.66
2910 3121 5.391203 GGGTGCTTCATTTTGCAAAATCATC 60.391 40.000 29.92 23.81 41.10 2.92
2921 3132 7.697352 TTTGCAAAATCATCTGTACTTTGTG 57.303 32.000 10.02 0.00 31.19 3.33
3011 3222 3.135414 GCATTGAGTTGCGCATAGAAA 57.865 42.857 12.75 4.59 32.06 2.52
3012 3223 3.103738 GCATTGAGTTGCGCATAGAAAG 58.896 45.455 12.75 0.00 32.06 2.62
3013 3224 3.688272 CATTGAGTTGCGCATAGAAAGG 58.312 45.455 12.75 2.04 0.00 3.11
3014 3225 1.737838 TGAGTTGCGCATAGAAAGGG 58.262 50.000 12.75 0.00 0.00 3.95
3015 3226 1.017387 GAGTTGCGCATAGAAAGGGG 58.983 55.000 12.75 0.00 0.00 4.79
3016 3227 0.328258 AGTTGCGCATAGAAAGGGGT 59.672 50.000 12.75 0.00 0.00 4.95
3018 3229 0.679640 TTGCGCATAGAAAGGGGTGG 60.680 55.000 12.75 0.00 0.00 4.61
3019 3230 1.823899 GCGCATAGAAAGGGGTGGG 60.824 63.158 0.30 0.00 0.00 4.61
3020 3231 1.152963 CGCATAGAAAGGGGTGGGG 60.153 63.158 0.00 0.00 0.00 4.96
3022 3233 1.230212 CATAGAAAGGGGTGGGGGC 59.770 63.158 0.00 0.00 0.00 5.80
3228 3545 4.020396 TGGCATCCATGTAGCAAACAAAAT 60.020 37.500 0.00 0.00 42.70 1.82
3229 3546 5.186603 TGGCATCCATGTAGCAAACAAAATA 59.813 36.000 0.00 0.00 42.70 1.40
3230 3547 5.519927 GGCATCCATGTAGCAAACAAAATAC 59.480 40.000 0.00 0.00 42.70 1.89
3231 3548 6.332630 GCATCCATGTAGCAAACAAAATACT 58.667 36.000 0.00 0.00 42.70 2.12
3232 3549 6.473455 GCATCCATGTAGCAAACAAAATACTC 59.527 38.462 0.00 0.00 42.70 2.59
3233 3550 6.509418 TCCATGTAGCAAACAAAATACTCC 57.491 37.500 0.00 0.00 42.70 3.85
3234 3551 5.417580 TCCATGTAGCAAACAAAATACTCCC 59.582 40.000 0.00 0.00 42.70 4.30
3235 3552 5.418840 CCATGTAGCAAACAAAATACTCCCT 59.581 40.000 0.00 0.00 42.70 4.20
3236 3553 6.404734 CCATGTAGCAAACAAAATACTCCCTC 60.405 42.308 0.00 0.00 42.70 4.30
3237 3554 5.876357 TGTAGCAAACAAAATACTCCCTCT 58.124 37.500 0.00 0.00 34.29 3.69
3238 3555 5.705441 TGTAGCAAACAAAATACTCCCTCTG 59.295 40.000 0.00 0.00 34.29 3.35
3239 3556 4.729868 AGCAAACAAAATACTCCCTCTGT 58.270 39.130 0.00 0.00 0.00 3.41
3240 3557 5.876357 AGCAAACAAAATACTCCCTCTGTA 58.124 37.500 0.00 0.00 0.00 2.74
3241 3558 6.303839 AGCAAACAAAATACTCCCTCTGTAA 58.696 36.000 0.00 0.00 0.00 2.41
3242 3559 6.775629 AGCAAACAAAATACTCCCTCTGTAAA 59.224 34.615 0.00 0.00 0.00 2.01
3243 3560 6.861572 GCAAACAAAATACTCCCTCTGTAAAC 59.138 38.462 0.00 0.00 0.00 2.01
3244 3561 7.255486 GCAAACAAAATACTCCCTCTGTAAACT 60.255 37.037 0.00 0.00 0.00 2.66
3245 3562 9.280174 CAAACAAAATACTCCCTCTGTAAACTA 57.720 33.333 0.00 0.00 0.00 2.24
3246 3563 9.856162 AAACAAAATACTCCCTCTGTAAACTAA 57.144 29.630 0.00 0.00 0.00 2.24
3255 3572 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3256 3573 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3257 3574 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3258 3575 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3259 3576 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3274 3591 6.910536 AGAGCGTTTAGATCACTATTTTGG 57.089 37.500 0.00 0.00 37.82 3.28
3275 3592 6.407202 AGAGCGTTTAGATCACTATTTTGGT 58.593 36.000 0.00 0.00 37.82 3.67
3276 3593 7.553334 AGAGCGTTTAGATCACTATTTTGGTA 58.447 34.615 0.00 0.00 37.82 3.25
3277 3594 8.204836 AGAGCGTTTAGATCACTATTTTGGTAT 58.795 33.333 0.00 0.00 37.82 2.73
3278 3595 8.732746 AGCGTTTAGATCACTATTTTGGTATT 57.267 30.769 0.00 0.00 0.00 1.89
3279 3596 8.827677 AGCGTTTAGATCACTATTTTGGTATTC 58.172 33.333 0.00 0.00 0.00 1.75
3280 3597 8.827677 GCGTTTAGATCACTATTTTGGTATTCT 58.172 33.333 0.00 0.00 0.00 2.40
3286 3603 8.827677 AGATCACTATTTTGGTATTCTAAACGC 58.172 33.333 0.00 0.00 0.00 4.84
3287 3604 8.732746 ATCACTATTTTGGTATTCTAAACGCT 57.267 30.769 0.00 0.00 0.00 5.07
3288 3605 8.556213 TCACTATTTTGGTATTCTAAACGCTT 57.444 30.769 0.00 0.00 0.00 4.68
3289 3606 9.005777 TCACTATTTTGGTATTCTAAACGCTTT 57.994 29.630 0.00 0.00 0.00 3.51
3290 3607 9.620660 CACTATTTTGGTATTCTAAACGCTTTT 57.379 29.630 0.00 0.00 0.00 2.27
3307 3624 7.704789 ACGCTTTTATATTAGTTTACGGAGG 57.295 36.000 0.00 0.00 0.00 4.30
3308 3625 6.703165 ACGCTTTTATATTAGTTTACGGAGGG 59.297 38.462 0.00 0.00 0.00 4.30
3309 3626 6.925165 CGCTTTTATATTAGTTTACGGAGGGA 59.075 38.462 0.00 0.00 0.00 4.20
3310 3627 7.115947 CGCTTTTATATTAGTTTACGGAGGGAG 59.884 40.741 0.00 0.00 0.00 4.30
3387 3710 3.189702 GGTAGATGCGCCTACTAAGAGAG 59.810 52.174 19.08 0.00 39.11 3.20
3406 3729 4.556233 AGAGCGGAAATTTTACTTTTGCC 58.444 39.130 0.00 0.00 0.00 4.52
3408 3731 2.410392 GCGGAAATTTTACTTTTGCCCG 59.590 45.455 0.00 0.00 37.67 6.13
3413 3736 5.332732 GGAAATTTTACTTTTGCCCGTTTCG 60.333 40.000 0.00 0.00 0.00 3.46
3418 3741 0.939106 CTTTTGCCCGTTTCGCCTTG 60.939 55.000 0.00 0.00 0.00 3.61
3437 3760 5.348164 CCTTGGTAGTTTTGTTTTGGACAG 58.652 41.667 0.00 0.00 39.94 3.51
3439 3762 6.095720 CCTTGGTAGTTTTGTTTTGGACAGTA 59.904 38.462 0.00 0.00 39.94 2.74
3441 3764 5.357596 TGGTAGTTTTGTTTTGGACAGTACC 59.642 40.000 0.00 0.00 39.94 3.34
3444 3767 7.229106 GGTAGTTTTGTTTTGGACAGTACCATA 59.771 37.037 0.00 0.00 39.94 2.74
3449 3772 7.915293 TTGTTTTGGACAGTACCATACATAG 57.085 36.000 0.00 0.00 39.94 2.23
3453 3776 7.915293 TTTGGACAGTACCATACATAGTTTG 57.085 36.000 0.00 0.00 39.82 2.93
3454 3777 5.424757 TGGACAGTACCATACATAGTTTGC 58.575 41.667 0.00 0.00 34.77 3.68
3455 3778 4.814771 GGACAGTACCATACATAGTTTGCC 59.185 45.833 0.00 0.00 0.00 4.52
3456 3779 4.777463 ACAGTACCATACATAGTTTGCCC 58.223 43.478 0.00 0.00 0.00 5.36
3457 3780 4.473559 ACAGTACCATACATAGTTTGCCCT 59.526 41.667 0.00 0.00 0.00 5.19
3458 3781 4.816385 CAGTACCATACATAGTTTGCCCTG 59.184 45.833 0.00 0.00 0.00 4.45
3459 3782 4.473559 AGTACCATACATAGTTTGCCCTGT 59.526 41.667 0.00 0.00 0.00 4.00
3461 3784 2.358898 CCATACATAGTTTGCCCTGTGC 59.641 50.000 0.00 0.00 41.77 4.57
3462 3785 3.282021 CATACATAGTTTGCCCTGTGCT 58.718 45.455 0.00 0.00 42.00 4.40
3470 3819 4.148838 AGTTTGCCCTGTGCTACAAATTA 58.851 39.130 0.00 0.00 42.00 1.40
3471 3820 4.022329 AGTTTGCCCTGTGCTACAAATTAC 60.022 41.667 0.00 0.00 42.00 1.89
3472 3821 2.080693 TGCCCTGTGCTACAAATTACG 58.919 47.619 0.00 0.00 42.00 3.18
3480 3829 6.591062 CCTGTGCTACAAATTACGGTTAGTTA 59.409 38.462 0.00 0.00 0.00 2.24
3485 3834 8.522830 TGCTACAAATTACGGTTAGTTAGTAGT 58.477 33.333 13.11 0.00 0.00 2.73
3548 3898 6.500041 TGAAAGTAAAGGGTGACAATTTTCG 58.500 36.000 0.00 0.00 0.00 3.46
3550 3900 5.432885 AGTAAAGGGTGACAATTTTCGTG 57.567 39.130 0.00 0.00 0.00 4.35
3561 3915 7.329582 GTGACAATTTTCGTGTGAAGATTTTG 58.670 34.615 0.00 0.00 36.94 2.44
3562 3916 6.019961 TGACAATTTTCGTGTGAAGATTTTGC 60.020 34.615 0.00 0.00 36.94 3.68
3618 3975 5.073311 TGTCACTACTCCAATTCTACAGC 57.927 43.478 0.00 0.00 0.00 4.40
3628 3985 8.273780 ACTCCAATTCTACAGCTTTAATTCTG 57.726 34.615 0.00 3.70 36.45 3.02
3637 3994 5.070001 ACAGCTTTAATTCTGTGGCAGTAA 58.930 37.500 8.72 0.00 41.53 2.24
3682 4039 5.043248 CACAACACGAGCATATGTCAGATA 58.957 41.667 4.29 0.00 0.00 1.98
3758 4115 5.091261 ACTGAAAATGTAGGAGTAGCAGG 57.909 43.478 0.00 0.00 0.00 4.85
3926 4291 8.167392 TCTGTTTCACCCTATTAGAATCCAAAA 58.833 33.333 0.00 0.00 0.00 2.44
3927 4292 8.348285 TGTTTCACCCTATTAGAATCCAAAAG 57.652 34.615 0.00 0.00 0.00 2.27
3995 4366 2.166829 TGGCACAACAGTTGTTTCAGT 58.833 42.857 16.70 0.00 43.23 3.41
3996 4367 2.560542 TGGCACAACAGTTGTTTCAGTT 59.439 40.909 16.70 0.00 43.23 3.16
3997 4368 3.179048 GGCACAACAGTTGTTTCAGTTC 58.821 45.455 16.70 0.73 43.23 3.01
3998 4369 3.366883 GGCACAACAGTTGTTTCAGTTCA 60.367 43.478 16.70 0.00 43.23 3.18
3999 4370 3.853671 GCACAACAGTTGTTTCAGTTCAG 59.146 43.478 16.70 3.42 43.23 3.02
4010 4381 4.141711 TGTTTCAGTTCAGAGGCAGTAACT 60.142 41.667 0.00 0.00 32.52 2.24
4019 4390 4.137543 CAGAGGCAGTAACTTTTCCTTGT 58.862 43.478 0.00 0.00 0.00 3.16
4029 4400 4.326504 ACTTTTCCTTGTCATTTGCCTG 57.673 40.909 0.00 0.00 0.00 4.85
4033 4404 0.890683 CCTTGTCATTTGCCTGGGAC 59.109 55.000 0.00 0.00 0.00 4.46
4041 4416 2.286365 TTTGCCTGGGACCTTACTTG 57.714 50.000 0.00 0.00 0.00 3.16
4114 4493 5.645067 GTGTTCTTGACCATGAATGATCTCA 59.355 40.000 0.00 0.00 0.00 3.27
4229 4608 1.302033 CTTGCTGCACCCGAAGAGT 60.302 57.895 0.00 0.00 0.00 3.24
4234 4613 0.534412 CTGCACCCGAAGAGTGAGAT 59.466 55.000 0.00 0.00 39.11 2.75
4462 4841 7.765695 ATATTCCCTTTGCAACATATCGAAT 57.234 32.000 0.00 3.90 0.00 3.34
4470 4849 3.000041 GCAACATATCGAATATCCCGCA 59.000 45.455 0.00 0.00 0.00 5.69
4509 4888 6.098982 TGGTATTGAGGTTTTTGTTGTGGATT 59.901 34.615 0.00 0.00 0.00 3.01
4521 4902 2.112928 TGGATTGTGTGCGCAGGT 59.887 55.556 12.22 0.00 0.00 4.00
4667 5051 9.671279 TTGCTTCTTTAGATGATGAATGAGTTA 57.329 29.630 0.00 0.00 0.00 2.24
4675 5059 6.867550 AGATGATGAATGAGTTACTGACGAA 58.132 36.000 0.00 0.00 0.00 3.85
4726 5110 9.819267 GTAGTATGTTAGCTTTATTCTTCAGGT 57.181 33.333 0.00 0.00 0.00 4.00
4776 5162 5.810095 TGGTTTGGTTGAAATTTTGTCCTT 58.190 33.333 0.00 0.00 0.00 3.36
4806 5192 6.649141 TCAGTTGTAGTAAGTGCCTGTTAATG 59.351 38.462 0.00 0.00 0.00 1.90
4825 5211 3.932545 TGCCATTTTGTGCTCGTTATT 57.067 38.095 0.00 0.00 0.00 1.40
4831 5217 5.799936 CCATTTTGTGCTCGTTATTAGTTGG 59.200 40.000 0.00 0.00 0.00 3.77
4832 5218 5.365403 TTTTGTGCTCGTTATTAGTTGGG 57.635 39.130 0.00 0.00 0.00 4.12
4833 5219 3.688694 TGTGCTCGTTATTAGTTGGGT 57.311 42.857 0.00 0.00 0.00 4.51
4834 5220 4.804868 TGTGCTCGTTATTAGTTGGGTA 57.195 40.909 0.00 0.00 0.00 3.69
4835 5221 5.149973 TGTGCTCGTTATTAGTTGGGTAA 57.850 39.130 0.00 0.00 0.00 2.85
4836 5222 5.172934 TGTGCTCGTTATTAGTTGGGTAAG 58.827 41.667 0.00 0.00 0.00 2.34
4837 5223 5.173664 GTGCTCGTTATTAGTTGGGTAAGT 58.826 41.667 0.00 0.00 0.00 2.24
4838 5224 5.063060 GTGCTCGTTATTAGTTGGGTAAGTG 59.937 44.000 0.00 0.00 0.00 3.16
4839 5225 4.033702 GCTCGTTATTAGTTGGGTAAGTGC 59.966 45.833 0.00 0.00 0.00 4.40
4840 5226 4.506758 TCGTTATTAGTTGGGTAAGTGCC 58.493 43.478 0.00 0.00 0.00 5.01
4841 5227 4.223477 TCGTTATTAGTTGGGTAAGTGCCT 59.777 41.667 0.00 0.00 0.00 4.75
4842 5228 4.331717 CGTTATTAGTTGGGTAAGTGCCTG 59.668 45.833 0.00 0.00 0.00 4.85
4843 5229 5.250982 GTTATTAGTTGGGTAAGTGCCTGT 58.749 41.667 0.00 0.00 0.00 4.00
4844 5230 3.868619 TTAGTTGGGTAAGTGCCTGTT 57.131 42.857 0.00 0.00 0.00 3.16
4845 5231 4.978438 TTAGTTGGGTAAGTGCCTGTTA 57.022 40.909 0.00 0.00 0.00 2.41
4846 5232 3.868619 AGTTGGGTAAGTGCCTGTTAA 57.131 42.857 0.00 0.00 0.00 2.01
4847 5233 4.382386 AGTTGGGTAAGTGCCTGTTAAT 57.618 40.909 0.00 0.00 0.00 1.40
4848 5234 4.079253 AGTTGGGTAAGTGCCTGTTAATG 58.921 43.478 0.00 0.00 0.00 1.90
4849 5235 2.442413 TGGGTAAGTGCCTGTTAATGC 58.558 47.619 0.00 0.00 0.00 3.56
4850 5236 1.749063 GGGTAAGTGCCTGTTAATGCC 59.251 52.381 0.00 0.00 0.00 4.40
4851 5237 2.442413 GGTAAGTGCCTGTTAATGCCA 58.558 47.619 0.00 0.00 0.00 4.92
4878 5264 7.762382 AGCTTTATGGTTTAATCTGTGCTTAC 58.238 34.615 0.00 0.00 0.00 2.34
4891 5277 4.635765 TCTGTGCTTACCAGAATTATGTGC 59.364 41.667 0.00 0.00 36.07 4.57
4893 5279 3.374058 GTGCTTACCAGAATTATGTGCGT 59.626 43.478 0.00 0.00 0.00 5.24
4895 5281 4.142708 TGCTTACCAGAATTATGTGCGTTG 60.143 41.667 0.00 0.00 0.00 4.10
4942 5328 5.564550 ACTCACTAGAAACAGGAAATGCAT 58.435 37.500 0.00 0.00 0.00 3.96
4954 5340 7.713764 ACAGGAAATGCATGTTTAACTTTTC 57.286 32.000 0.00 0.00 38.59 2.29
4978 5364 6.598850 TCTTCAGCATAAGAAATGCATGTGTA 59.401 34.615 12.12 0.00 46.77 2.90
4985 5371 8.019669 GCATAAGAAATGCATGTGTATTAGGAG 58.980 37.037 0.00 0.00 44.00 3.69
4988 5374 8.668510 AAGAAATGCATGTGTATTAGGAGTAG 57.331 34.615 0.00 0.00 30.21 2.57
4993 5379 8.807948 ATGCATGTGTATTAGGAGTAGTTTTT 57.192 30.769 0.00 0.00 0.00 1.94
5065 5481 9.968743 CAATAATAAGTAGACCGAAGAAAACAC 57.031 33.333 0.00 0.00 0.00 3.32
5066 5482 6.701432 AATAAGTAGACCGAAGAAAACACG 57.299 37.500 0.00 0.00 0.00 4.49
5082 5499 9.931210 AAGAAAACACGAATCAGTAAGTAAAAG 57.069 29.630 0.00 0.00 0.00 2.27
5119 5536 2.861147 GGCCAAACCTCTACAGAAGT 57.139 50.000 0.00 0.00 34.51 3.01
5123 5540 4.023107 GGCCAAACCTCTACAGAAGTTTTC 60.023 45.833 0.00 0.64 36.78 2.29
5144 5561 5.303747 TCTCGTTGTTGCTTTGAAGAAAA 57.696 34.783 0.00 0.00 0.00 2.29
5153 5570 8.489990 TGTTGCTTTGAAGAAAAATGAAATGA 57.510 26.923 0.00 0.00 0.00 2.57
5158 5575 8.440833 GCTTTGAAGAAAAATGAAATGATCCTG 58.559 33.333 0.00 0.00 0.00 3.86
5188 5605 2.787473 TTTTGAGAGCATGATCCCGT 57.213 45.000 7.49 0.00 0.00 5.28
5189 5606 3.904800 TTTTGAGAGCATGATCCCGTA 57.095 42.857 7.49 0.00 0.00 4.02
5190 5607 3.904800 TTTGAGAGCATGATCCCGTAA 57.095 42.857 7.49 0.00 0.00 3.18
5191 5608 3.459232 TTGAGAGCATGATCCCGTAAG 57.541 47.619 7.49 0.00 0.00 2.34
5192 5609 2.388735 TGAGAGCATGATCCCGTAAGT 58.611 47.619 7.49 0.00 0.00 2.24
5193 5610 2.766263 TGAGAGCATGATCCCGTAAGTT 59.234 45.455 7.49 0.00 0.00 2.66
5194 5611 3.197766 TGAGAGCATGATCCCGTAAGTTT 59.802 43.478 7.49 0.00 0.00 2.66
5195 5612 4.192317 GAGAGCATGATCCCGTAAGTTTT 58.808 43.478 7.49 0.00 0.00 2.43
5196 5613 4.192317 AGAGCATGATCCCGTAAGTTTTC 58.808 43.478 7.49 0.00 0.00 2.29
5197 5614 4.080863 AGAGCATGATCCCGTAAGTTTTCT 60.081 41.667 7.49 0.00 0.00 2.52
5198 5615 4.192317 AGCATGATCCCGTAAGTTTTCTC 58.808 43.478 0.00 0.00 0.00 2.87
5199 5616 3.938963 GCATGATCCCGTAAGTTTTCTCA 59.061 43.478 0.00 0.00 0.00 3.27
5200 5617 4.034510 GCATGATCCCGTAAGTTTTCTCAG 59.965 45.833 0.00 0.00 0.00 3.35
5201 5618 3.596214 TGATCCCGTAAGTTTTCTCAGC 58.404 45.455 0.00 0.00 0.00 4.26
5202 5619 3.007506 TGATCCCGTAAGTTTTCTCAGCA 59.992 43.478 0.00 0.00 0.00 4.41
5203 5620 2.762745 TCCCGTAAGTTTTCTCAGCAC 58.237 47.619 0.00 0.00 0.00 4.40
5204 5621 2.103432 TCCCGTAAGTTTTCTCAGCACA 59.897 45.455 0.00 0.00 0.00 4.57
5205 5622 2.480419 CCCGTAAGTTTTCTCAGCACAG 59.520 50.000 0.00 0.00 0.00 3.66
5206 5623 2.480419 CCGTAAGTTTTCTCAGCACAGG 59.520 50.000 0.00 0.00 0.00 4.00
5207 5624 3.390135 CGTAAGTTTTCTCAGCACAGGA 58.610 45.455 0.00 0.00 0.00 3.86
5208 5625 3.807622 CGTAAGTTTTCTCAGCACAGGAA 59.192 43.478 0.00 0.00 0.00 3.36
5209 5626 4.272504 CGTAAGTTTTCTCAGCACAGGAAA 59.727 41.667 0.00 0.00 0.00 3.13
5210 5627 5.049405 CGTAAGTTTTCTCAGCACAGGAAAT 60.049 40.000 0.00 0.00 0.00 2.17
5211 5628 4.843220 AGTTTTCTCAGCACAGGAAATG 57.157 40.909 0.00 0.00 0.00 2.32
5212 5629 4.210331 AGTTTTCTCAGCACAGGAAATGT 58.790 39.130 0.00 0.00 45.43 2.71
5213 5630 5.376625 AGTTTTCTCAGCACAGGAAATGTA 58.623 37.500 0.00 0.00 41.41 2.29
5214 5631 5.239525 AGTTTTCTCAGCACAGGAAATGTAC 59.760 40.000 0.00 0.00 41.41 2.90
5215 5632 4.623932 TTCTCAGCACAGGAAATGTACT 57.376 40.909 0.00 0.00 41.41 2.73
5216 5633 4.623932 TCTCAGCACAGGAAATGTACTT 57.376 40.909 0.00 0.00 41.41 2.24
5217 5634 4.569943 TCTCAGCACAGGAAATGTACTTC 58.430 43.478 0.00 0.00 41.41 3.01
5218 5635 4.284490 TCTCAGCACAGGAAATGTACTTCT 59.716 41.667 0.00 0.00 41.41 2.85
5219 5636 4.973168 TCAGCACAGGAAATGTACTTCTT 58.027 39.130 0.00 0.00 41.41 2.52
5220 5637 5.376625 TCAGCACAGGAAATGTACTTCTTT 58.623 37.500 0.00 0.00 41.41 2.52
5221 5638 5.827797 TCAGCACAGGAAATGTACTTCTTTT 59.172 36.000 0.00 0.00 41.41 2.27
5222 5639 6.321181 TCAGCACAGGAAATGTACTTCTTTTT 59.679 34.615 0.00 0.00 41.41 1.94
5261 5678 9.180678 GGAAATGTACTTGTAAGTGTGATTTTG 57.819 33.333 7.50 0.00 40.07 2.44
5264 5681 8.677148 ATGTACTTGTAAGTGTGATTTTGAGT 57.323 30.769 7.50 0.00 40.07 3.41
5265 5682 8.500753 TGTACTTGTAAGTGTGATTTTGAGTT 57.499 30.769 7.50 0.00 40.07 3.01
5266 5683 8.952278 TGTACTTGTAAGTGTGATTTTGAGTTT 58.048 29.630 7.50 0.00 40.07 2.66
5267 5684 9.783256 GTACTTGTAAGTGTGATTTTGAGTTTT 57.217 29.630 7.50 0.00 40.07 2.43
5269 5686 9.139174 ACTTGTAAGTGTGATTTTGAGTTTTTG 57.861 29.630 0.00 0.00 37.98 2.44
5270 5687 9.352784 CTTGTAAGTGTGATTTTGAGTTTTTGA 57.647 29.630 0.00 0.00 0.00 2.69
5271 5688 9.868277 TTGTAAGTGTGATTTTGAGTTTTTGAT 57.132 25.926 0.00 0.00 0.00 2.57
5280 5697 9.288124 TGATTTTGAGTTTTTGATATACATGCG 57.712 29.630 0.00 0.00 0.00 4.73
5281 5698 7.504922 TTTTGAGTTTTTGATATACATGCGC 57.495 32.000 0.00 0.00 0.00 6.09
5282 5699 6.435430 TTGAGTTTTTGATATACATGCGCT 57.565 33.333 9.73 0.00 0.00 5.92
5283 5700 6.435430 TGAGTTTTTGATATACATGCGCTT 57.565 33.333 9.73 0.00 0.00 4.68
5284 5701 6.851609 TGAGTTTTTGATATACATGCGCTTT 58.148 32.000 9.73 0.00 0.00 3.51
5285 5702 7.312154 TGAGTTTTTGATATACATGCGCTTTT 58.688 30.769 9.73 0.00 0.00 2.27
5286 5703 8.454894 TGAGTTTTTGATATACATGCGCTTTTA 58.545 29.630 9.73 0.00 0.00 1.52
5287 5704 9.284594 GAGTTTTTGATATACATGCGCTTTTAA 57.715 29.630 9.73 0.00 0.00 1.52
5288 5705 9.289303 AGTTTTTGATATACATGCGCTTTTAAG 57.711 29.630 9.73 0.00 0.00 1.85
5289 5706 8.531530 GTTTTTGATATACATGCGCTTTTAAGG 58.468 33.333 9.73 0.00 0.00 2.69
5290 5707 5.940192 TGATATACATGCGCTTTTAAGGG 57.060 39.130 9.73 2.47 41.45 3.95
5291 5708 4.759693 TGATATACATGCGCTTTTAAGGGG 59.240 41.667 9.73 0.00 39.18 4.79
5292 5709 2.791347 TACATGCGCTTTTAAGGGGA 57.209 45.000 9.73 6.01 42.95 4.81
5293 5710 1.463674 ACATGCGCTTTTAAGGGGAG 58.536 50.000 9.73 3.39 42.14 4.30
5294 5711 0.101219 CATGCGCTTTTAAGGGGAGC 59.899 55.000 9.73 0.00 42.14 4.70
5295 5712 0.323360 ATGCGCTTTTAAGGGGAGCA 60.323 50.000 9.73 0.00 42.14 4.26
5296 5713 0.538516 TGCGCTTTTAAGGGGAGCAA 60.539 50.000 9.73 0.00 39.18 3.91
5297 5714 0.109272 GCGCTTTTAAGGGGAGCAAC 60.109 55.000 0.00 0.00 39.18 4.17
5298 5715 1.534729 CGCTTTTAAGGGGAGCAACT 58.465 50.000 0.00 0.00 36.22 3.16
5299 5716 2.706890 CGCTTTTAAGGGGAGCAACTA 58.293 47.619 0.00 0.00 36.22 2.24
5300 5717 2.678336 CGCTTTTAAGGGGAGCAACTAG 59.322 50.000 0.00 0.00 36.22 2.57
5301 5718 3.687125 GCTTTTAAGGGGAGCAACTAGT 58.313 45.455 0.00 0.00 36.45 2.57
5302 5719 4.079970 GCTTTTAAGGGGAGCAACTAGTT 58.920 43.478 1.12 1.12 36.45 2.24
5303 5720 5.250982 GCTTTTAAGGGGAGCAACTAGTTA 58.749 41.667 8.04 0.00 36.45 2.24
5304 5721 5.708697 GCTTTTAAGGGGAGCAACTAGTTAA 59.291 40.000 8.04 0.00 36.45 2.01
5305 5722 6.349115 GCTTTTAAGGGGAGCAACTAGTTAAC 60.349 42.308 8.04 3.72 36.45 2.01
5306 5723 5.829062 TTAAGGGGAGCAACTAGTTAACA 57.171 39.130 8.04 0.00 0.00 2.41
5307 5724 4.717279 AAGGGGAGCAACTAGTTAACAA 57.283 40.909 8.04 0.00 0.00 2.83
5308 5725 4.287766 AGGGGAGCAACTAGTTAACAAG 57.712 45.455 8.04 0.00 0.00 3.16
5309 5726 2.747989 GGGGAGCAACTAGTTAACAAGC 59.252 50.000 8.04 7.28 0.00 4.01
5310 5727 2.415512 GGGAGCAACTAGTTAACAAGCG 59.584 50.000 8.04 0.00 0.00 4.68
5311 5728 2.159693 GGAGCAACTAGTTAACAAGCGC 60.160 50.000 8.04 8.78 0.00 5.92
5312 5729 2.737252 GAGCAACTAGTTAACAAGCGCT 59.263 45.455 2.64 2.64 0.00 5.92
5313 5730 2.737252 AGCAACTAGTTAACAAGCGCTC 59.263 45.455 12.06 0.00 0.00 5.03
5314 5731 2.159693 GCAACTAGTTAACAAGCGCTCC 60.160 50.000 12.06 0.00 0.00 4.70
5315 5732 3.326747 CAACTAGTTAACAAGCGCTCCT 58.673 45.455 12.06 0.00 0.00 3.69
5316 5733 3.679824 ACTAGTTAACAAGCGCTCCTT 57.320 42.857 12.06 7.64 0.00 3.36
5317 5734 3.586892 ACTAGTTAACAAGCGCTCCTTC 58.413 45.455 12.06 0.00 0.00 3.46
5318 5735 1.429463 AGTTAACAAGCGCTCCTTCG 58.571 50.000 12.06 0.00 0.00 3.79
5319 5736 0.442699 GTTAACAAGCGCTCCTTCGG 59.557 55.000 12.06 0.00 0.00 4.30
5320 5737 0.672401 TTAACAAGCGCTCCTTCGGG 60.672 55.000 12.06 0.00 0.00 5.14
5321 5738 1.537814 TAACAAGCGCTCCTTCGGGA 61.538 55.000 12.06 0.00 42.74 5.14
5329 5746 2.927856 TCCTTCGGGAGCCTTGCA 60.928 61.111 0.00 0.00 39.58 4.08
5330 5747 2.034066 CCTTCGGGAGCCTTGCAA 59.966 61.111 0.00 0.00 37.25 4.08
5331 5748 2.335712 CCTTCGGGAGCCTTGCAAC 61.336 63.158 0.00 0.00 37.25 4.17
5332 5749 2.668212 TTCGGGAGCCTTGCAACG 60.668 61.111 0.00 0.00 0.00 4.10
5333 5750 3.171828 TTCGGGAGCCTTGCAACGA 62.172 57.895 0.00 0.00 0.00 3.85
5334 5751 2.436646 CGGGAGCCTTGCAACGAT 60.437 61.111 0.00 0.00 0.00 3.73
5335 5752 2.464459 CGGGAGCCTTGCAACGATC 61.464 63.158 5.28 5.28 0.00 3.69
5336 5753 1.377202 GGGAGCCTTGCAACGATCA 60.377 57.895 14.21 0.00 0.00 2.92
5337 5754 1.372087 GGGAGCCTTGCAACGATCAG 61.372 60.000 14.21 0.00 0.00 2.90
5338 5755 1.427020 GAGCCTTGCAACGATCAGC 59.573 57.895 8.54 0.00 0.00 4.26
5348 5765 3.084579 CGATCAGCGTCACTTGGC 58.915 61.111 0.00 0.00 34.64 4.52
5356 5773 3.482783 GTCACTTGGCGCGCTCTC 61.483 66.667 32.29 15.45 0.00 3.20
5357 5774 3.989787 TCACTTGGCGCGCTCTCA 61.990 61.111 32.29 18.24 0.00 3.27
5358 5775 3.485431 CACTTGGCGCGCTCTCAG 61.485 66.667 32.29 21.96 0.00 3.35
5364 5781 3.934684 GCGCGCTCTCAGCCATTC 61.935 66.667 26.67 0.00 38.18 2.67
5365 5782 3.624300 CGCGCTCTCAGCCATTCG 61.624 66.667 5.56 0.00 38.18 3.34
5366 5783 3.934684 GCGCTCTCAGCCATTCGC 61.935 66.667 0.00 0.00 38.18 4.70
5367 5784 3.267860 CGCTCTCAGCCATTCGCC 61.268 66.667 0.00 0.00 38.18 5.54
5368 5785 2.124983 GCTCTCAGCCATTCGCCA 60.125 61.111 0.00 0.00 38.78 5.69
5369 5786 2.467826 GCTCTCAGCCATTCGCCAC 61.468 63.158 0.00 0.00 38.78 5.01
5370 5787 2.125552 TCTCAGCCATTCGCCACG 60.126 61.111 0.00 0.00 38.78 4.94
5371 5788 2.434884 CTCAGCCATTCGCCACGT 60.435 61.111 0.00 0.00 38.78 4.49
5372 5789 2.741985 TCAGCCATTCGCCACGTG 60.742 61.111 9.08 9.08 38.78 4.49
5373 5790 3.049674 CAGCCATTCGCCACGTGT 61.050 61.111 15.65 0.00 38.78 4.49
5374 5791 2.742372 AGCCATTCGCCACGTGTC 60.742 61.111 15.65 0.00 38.78 3.67
5375 5792 4.147322 GCCATTCGCCACGTGTCG 62.147 66.667 13.61 13.61 0.00 4.35
5376 5793 4.147322 CCATTCGCCACGTGTCGC 62.147 66.667 15.09 10.47 0.00 5.19
5384 5801 4.700365 CACGTGTCGCGCTCTGGA 62.700 66.667 7.58 0.00 46.11 3.86
5385 5802 4.702081 ACGTGTCGCGCTCTGGAC 62.702 66.667 5.56 5.97 46.11 4.02
5393 5810 2.262915 CGCTCTGGACGCTTCCTT 59.737 61.111 11.01 0.00 43.31 3.36
5394 5811 1.807573 CGCTCTGGACGCTTCCTTC 60.808 63.158 11.01 0.00 43.31 3.46
5395 5812 1.807573 GCTCTGGACGCTTCCTTCG 60.808 63.158 11.01 0.00 43.31 3.79
5396 5813 1.153745 CTCTGGACGCTTCCTTCGG 60.154 63.158 11.01 0.00 43.31 4.30
5397 5814 1.595993 CTCTGGACGCTTCCTTCGGA 61.596 60.000 11.01 3.28 43.31 4.55
5398 5815 0.970937 TCTGGACGCTTCCTTCGGAT 60.971 55.000 11.01 0.00 43.31 4.18
5399 5816 0.108138 CTGGACGCTTCCTTCGGATT 60.108 55.000 11.01 0.00 43.31 3.01
5400 5817 0.323629 TGGACGCTTCCTTCGGATTT 59.676 50.000 11.01 0.00 43.31 2.17
5401 5818 1.271163 TGGACGCTTCCTTCGGATTTT 60.271 47.619 11.01 0.00 43.31 1.82
5402 5819 1.130561 GGACGCTTCCTTCGGATTTTG 59.869 52.381 1.07 0.00 39.13 2.44
5403 5820 1.804748 GACGCTTCCTTCGGATTTTGT 59.195 47.619 0.00 0.00 0.00 2.83
5404 5821 2.225727 GACGCTTCCTTCGGATTTTGTT 59.774 45.455 0.00 0.00 0.00 2.83
5405 5822 2.621526 ACGCTTCCTTCGGATTTTGTTT 59.378 40.909 0.00 0.00 0.00 2.83
5406 5823 3.067601 ACGCTTCCTTCGGATTTTGTTTT 59.932 39.130 0.00 0.00 0.00 2.43
5407 5824 4.048504 CGCTTCCTTCGGATTTTGTTTTT 58.951 39.130 0.00 0.00 0.00 1.94
5435 5852 0.994737 AAAATCGCACGCGTTTTCGG 60.995 50.000 10.22 0.00 44.29 4.30
5436 5853 3.921606 AATCGCACGCGTTTTCGGC 62.922 57.895 10.22 9.05 44.29 5.54
5438 5855 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
5439 5856 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
5440 5857 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
5441 5858 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
5442 5859 1.744374 CACGCGTTTTCGGCTTTTTA 58.256 45.000 10.22 0.00 44.29 1.52
5443 5860 2.110226 CACGCGTTTTCGGCTTTTTAA 58.890 42.857 10.22 0.00 44.29 1.52
5444 5861 2.530700 CACGCGTTTTCGGCTTTTTAAA 59.469 40.909 10.22 0.00 44.29 1.52
5445 5862 2.531103 ACGCGTTTTCGGCTTTTTAAAC 59.469 40.909 5.58 0.00 44.29 2.01
5447 5864 3.739484 CGTTTTCGGCTTTTTAAACGG 57.261 42.857 10.17 0.00 45.26 4.44
5448 5865 3.107407 CGTTTTCGGCTTTTTAAACGGT 58.893 40.909 10.17 0.00 45.26 4.83
5449 5866 3.547068 CGTTTTCGGCTTTTTAAACGGTT 59.453 39.130 10.17 0.00 45.26 4.44
5450 5867 4.031539 CGTTTTCGGCTTTTTAAACGGTTT 59.968 37.500 11.33 11.33 45.26 3.27
5451 5868 5.444350 CGTTTTCGGCTTTTTAAACGGTTTT 60.444 36.000 11.87 0.00 45.26 2.43
5452 5869 6.305639 GTTTTCGGCTTTTTAAACGGTTTTT 58.694 32.000 11.87 0.00 0.00 1.94
5469 5886 3.372660 TTTTTCCGGGGTTTTTCGATG 57.627 42.857 0.00 0.00 0.00 3.84
5470 5887 1.984066 TTTCCGGGGTTTTTCGATGT 58.016 45.000 0.00 0.00 0.00 3.06
5471 5888 1.984066 TTCCGGGGTTTTTCGATGTT 58.016 45.000 0.00 0.00 0.00 2.71
5472 5889 1.984066 TCCGGGGTTTTTCGATGTTT 58.016 45.000 0.00 0.00 0.00 2.83
5473 5890 2.308690 TCCGGGGTTTTTCGATGTTTT 58.691 42.857 0.00 0.00 0.00 2.43
5474 5891 2.034812 TCCGGGGTTTTTCGATGTTTTG 59.965 45.455 0.00 0.00 0.00 2.44
5475 5892 2.399448 CGGGGTTTTTCGATGTTTTGG 58.601 47.619 0.00 0.00 0.00 3.28
5476 5893 2.223852 CGGGGTTTTTCGATGTTTTGGT 60.224 45.455 0.00 0.00 0.00 3.67
5477 5894 3.738590 CGGGGTTTTTCGATGTTTTGGTT 60.739 43.478 0.00 0.00 0.00 3.67
5478 5895 4.193090 GGGGTTTTTCGATGTTTTGGTTT 58.807 39.130 0.00 0.00 0.00 3.27
5479 5896 4.271533 GGGGTTTTTCGATGTTTTGGTTTC 59.728 41.667 0.00 0.00 0.00 2.78
5480 5897 5.113383 GGGTTTTTCGATGTTTTGGTTTCT 58.887 37.500 0.00 0.00 0.00 2.52
5481 5898 5.233476 GGGTTTTTCGATGTTTTGGTTTCTC 59.767 40.000 0.00 0.00 0.00 2.87
5482 5899 5.233476 GGTTTTTCGATGTTTTGGTTTCTCC 59.767 40.000 0.00 0.00 0.00 3.71
5483 5900 4.577834 TTTCGATGTTTTGGTTTCTCCC 57.422 40.909 0.00 0.00 34.77 4.30
5484 5901 2.510613 TCGATGTTTTGGTTTCTCCCC 58.489 47.619 0.00 0.00 34.77 4.81
5485 5902 1.199097 CGATGTTTTGGTTTCTCCCCG 59.801 52.381 0.00 0.00 34.77 5.73
5486 5903 1.544246 GATGTTTTGGTTTCTCCCCGG 59.456 52.381 0.00 0.00 34.77 5.73
5487 5904 0.259356 TGTTTTGGTTTCTCCCCGGT 59.741 50.000 0.00 0.00 34.77 5.28
5488 5905 0.956633 GTTTTGGTTTCTCCCCGGTC 59.043 55.000 0.00 0.00 34.77 4.79
5489 5906 0.848053 TTTTGGTTTCTCCCCGGTCT 59.152 50.000 0.00 0.00 34.77 3.85
5490 5907 0.848053 TTTGGTTTCTCCCCGGTCTT 59.152 50.000 0.00 0.00 34.77 3.01
5491 5908 0.848053 TTGGTTTCTCCCCGGTCTTT 59.152 50.000 0.00 0.00 34.77 2.52
5492 5909 0.399075 TGGTTTCTCCCCGGTCTTTC 59.601 55.000 0.00 0.00 34.77 2.62
5493 5910 0.691332 GGTTTCTCCCCGGTCTTTCT 59.309 55.000 0.00 0.00 0.00 2.52
5494 5911 1.073444 GGTTTCTCCCCGGTCTTTCTT 59.927 52.381 0.00 0.00 0.00 2.52
5495 5912 2.303890 GGTTTCTCCCCGGTCTTTCTTA 59.696 50.000 0.00 0.00 0.00 2.10
5496 5913 3.597255 GTTTCTCCCCGGTCTTTCTTAG 58.403 50.000 0.00 0.00 0.00 2.18
5497 5914 1.192428 TCTCCCCGGTCTTTCTTAGC 58.808 55.000 0.00 0.00 0.00 3.09
5498 5915 1.196012 CTCCCCGGTCTTTCTTAGCT 58.804 55.000 0.00 0.00 0.00 3.32
5499 5916 1.555533 CTCCCCGGTCTTTCTTAGCTT 59.444 52.381 0.00 0.00 0.00 3.74
5500 5917 1.982958 TCCCCGGTCTTTCTTAGCTTT 59.017 47.619 0.00 0.00 0.00 3.51
5501 5918 2.374170 TCCCCGGTCTTTCTTAGCTTTT 59.626 45.455 0.00 0.00 0.00 2.27
5502 5919 2.747989 CCCCGGTCTTTCTTAGCTTTTC 59.252 50.000 0.00 0.00 0.00 2.29
5503 5920 2.415512 CCCGGTCTTTCTTAGCTTTTCG 59.584 50.000 0.00 0.00 0.00 3.46
5504 5921 3.323243 CCGGTCTTTCTTAGCTTTTCGA 58.677 45.455 0.00 0.00 0.00 3.71
5505 5922 3.933332 CCGGTCTTTCTTAGCTTTTCGAT 59.067 43.478 0.00 0.00 0.00 3.59
5506 5923 5.107133 CCGGTCTTTCTTAGCTTTTCGATA 58.893 41.667 0.00 0.00 0.00 2.92
5507 5924 5.579511 CCGGTCTTTCTTAGCTTTTCGATAA 59.420 40.000 0.00 0.00 0.00 1.75
5508 5925 6.091713 CCGGTCTTTCTTAGCTTTTCGATAAA 59.908 38.462 0.00 0.00 0.00 1.40
5509 5926 7.360607 CCGGTCTTTCTTAGCTTTTCGATAAAA 60.361 37.037 0.00 0.00 33.58 1.52
5510 5927 8.013378 CGGTCTTTCTTAGCTTTTCGATAAAAA 58.987 33.333 0.00 0.00 34.26 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.188786 GCGAGTAACTGCTGCGGG 61.189 66.667 13.87 2.03 0.00 6.13
1 2 3.188786 GGCGAGTAACTGCTGCGG 61.189 66.667 6.98 6.98 0.00 5.69
2 3 2.125912 AGGCGAGTAACTGCTGCG 60.126 61.111 0.00 0.00 0.00 5.18
3 4 1.355066 GACAGGCGAGTAACTGCTGC 61.355 60.000 0.00 0.00 38.25 5.25
4 5 0.737715 GGACAGGCGAGTAACTGCTG 60.738 60.000 0.00 0.00 38.25 4.41
5 6 0.900647 AGGACAGGCGAGTAACTGCT 60.901 55.000 0.00 0.00 38.25 4.24
30 31 3.556004 CGAGGGCTCAGAGAGAACTTTTT 60.556 47.826 0.00 0.00 0.00 1.94
84 86 2.963928 TAATGGCGGGCATGGAGCTG 62.964 60.000 18.40 0.00 44.79 4.24
85 87 2.283143 TTAATGGCGGGCATGGAGCT 62.283 55.000 18.40 4.36 44.79 4.09
131 139 0.758685 AGGGGGAATCTCTGAGCGAG 60.759 60.000 0.00 0.00 41.30 5.03
132 140 0.757188 GAGGGGGAATCTCTGAGCGA 60.757 60.000 0.00 0.00 0.00 4.93
135 144 0.397816 ACGGAGGGGGAATCTCTGAG 60.398 60.000 6.89 0.00 39.36 3.35
161 170 2.747855 GAGAAGGGCAACAGCGGG 60.748 66.667 0.00 0.00 39.74 6.13
173 182 1.467556 GATCGAGCACGCACGAGAAG 61.468 60.000 16.15 0.00 41.66 2.85
183 192 0.459934 AAGCAGAGCAGATCGAGCAC 60.460 55.000 2.38 8.78 36.61 4.40
236 264 1.078848 ACGAGGACAAGCAGATGGC 60.079 57.895 0.00 0.00 45.30 4.40
288 316 5.535753 AGATTGAAACTTTTTGGACAGGG 57.464 39.130 0.00 0.00 0.00 4.45
335 363 1.544703 GAGGAGGAGGAGTAGGGGG 59.455 68.421 0.00 0.00 0.00 5.40
347 375 2.612251 GGGAGGAGGAGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
348 376 1.673928 ATGGGGAGGAGGAGGAGGAG 61.674 65.000 0.00 0.00 0.00 3.69
349 377 1.630333 ATGGGGAGGAGGAGGAGGA 60.630 63.158 0.00 0.00 0.00 3.71
352 380 0.631998 AGAGATGGGGAGGAGGAGGA 60.632 60.000 0.00 0.00 0.00 3.71
358 386 0.856982 GAGGAGAGAGATGGGGAGGA 59.143 60.000 0.00 0.00 0.00 3.71
365 393 4.077108 CTGGATGAGAGAGGAGAGAGATG 58.923 52.174 0.00 0.00 0.00 2.90
366 394 3.499202 GCTGGATGAGAGAGGAGAGAGAT 60.499 52.174 0.00 0.00 0.00 2.75
367 395 2.158623 GCTGGATGAGAGAGGAGAGAGA 60.159 54.545 0.00 0.00 0.00 3.10
368 396 2.233271 GCTGGATGAGAGAGGAGAGAG 58.767 57.143 0.00 0.00 0.00 3.20
369 397 1.133513 GGCTGGATGAGAGAGGAGAGA 60.134 57.143 0.00 0.00 0.00 3.10
370 398 1.331214 GGCTGGATGAGAGAGGAGAG 58.669 60.000 0.00 0.00 0.00 3.20
371 399 0.633378 TGGCTGGATGAGAGAGGAGA 59.367 55.000 0.00 0.00 0.00 3.71
372 400 0.752054 GTGGCTGGATGAGAGAGGAG 59.248 60.000 0.00 0.00 0.00 3.69
373 401 1.039785 CGTGGCTGGATGAGAGAGGA 61.040 60.000 0.00 0.00 0.00 3.71
374 402 1.440893 CGTGGCTGGATGAGAGAGG 59.559 63.158 0.00 0.00 0.00 3.69
390 418 2.032071 CAAACGAGGGGGAAGCGT 59.968 61.111 0.00 0.00 40.35 5.07
392 420 1.603739 AAGCAAACGAGGGGGAAGC 60.604 57.895 0.00 0.00 0.00 3.86
399 427 1.903404 AAGGGCCAAGCAAACGAGG 60.903 57.895 6.18 0.00 0.00 4.63
432 460 1.064134 GCTTTTATTGGAGCCGCGG 59.936 57.895 24.05 24.05 32.80 6.46
458 486 4.379243 AAGTGGAGACGGCTGCGG 62.379 66.667 4.93 5.60 34.84 5.69
466 494 1.079750 GGGCGACTGAAGTGGAGAC 60.080 63.158 0.00 0.00 0.00 3.36
469 497 2.741092 GTGGGCGACTGAAGTGGA 59.259 61.111 0.00 0.00 0.00 4.02
495 524 0.173255 AAATTCAATCCCGCTTGCCG 59.827 50.000 0.00 0.00 0.00 5.69
501 530 0.805711 CGGCCAAAATTCAATCCCGC 60.806 55.000 2.24 0.00 0.00 6.13
527 566 0.768221 ACCTGAAGGGCTGAACCTGA 60.768 55.000 0.56 0.00 40.87 3.86
528 567 0.984230 TACCTGAAGGGCTGAACCTG 59.016 55.000 0.56 0.00 40.87 4.00
529 568 0.984995 GTACCTGAAGGGCTGAACCT 59.015 55.000 0.56 0.00 44.56 3.50
530 569 0.035343 GGTACCTGAAGGGCTGAACC 60.035 60.000 4.06 0.00 40.27 3.62
531 570 0.984995 AGGTACCTGAAGGGCTGAAC 59.015 55.000 15.42 0.00 40.27 3.18
532 571 1.203313 AGAGGTACCTGAAGGGCTGAA 60.203 52.381 22.10 0.00 40.27 3.02
533 572 0.413832 AGAGGTACCTGAAGGGCTGA 59.586 55.000 22.10 0.00 40.27 4.26
534 573 2.160721 TAGAGGTACCTGAAGGGCTG 57.839 55.000 22.10 0.00 40.27 4.85
535 574 2.426561 GGATAGAGGTACCTGAAGGGCT 60.427 54.545 22.10 11.54 40.27 5.19
536 575 1.972075 GGATAGAGGTACCTGAAGGGC 59.028 57.143 22.10 3.12 40.27 5.19
537 576 3.235200 CTGGATAGAGGTACCTGAAGGG 58.765 54.545 22.10 0.00 40.27 3.95
538 577 2.630580 GCTGGATAGAGGTACCTGAAGG 59.369 54.545 22.10 3.92 42.17 3.46
539 578 2.294791 CGCTGGATAGAGGTACCTGAAG 59.705 54.545 22.10 8.29 0.00 3.02
568 607 1.808945 CAAGAAGAAATCGCTGGTGCT 59.191 47.619 0.00 0.00 36.97 4.40
572 611 2.704572 ACTCCAAGAAGAAATCGCTGG 58.295 47.619 0.00 0.00 37.30 4.85
573 612 3.308323 GCTACTCCAAGAAGAAATCGCTG 59.692 47.826 0.00 0.00 0.00 5.18
575 614 3.262420 TGCTACTCCAAGAAGAAATCGC 58.738 45.455 0.00 0.00 0.00 4.58
628 685 7.095102 CCAGAACCTGCATTTTTATTTTCCTTG 60.095 37.037 0.00 0.00 0.00 3.61
632 689 6.591448 CCTCCAGAACCTGCATTTTTATTTTC 59.409 38.462 0.00 0.00 0.00 2.29
810 869 0.541392 CTGTTCCGTCCATCCATCCA 59.459 55.000 0.00 0.00 0.00 3.41
967 1032 3.003173 CGAAGCACCTCTCCCCCA 61.003 66.667 0.00 0.00 0.00 4.96
1200 1268 0.096628 CAAGCAGACTGATTGCGCTC 59.903 55.000 19.59 0.00 45.98 5.03
1246 1314 5.445939 GCAATCAAGCAAGCAATCAATCAAG 60.446 40.000 0.00 0.00 0.00 3.02
1258 1326 1.796459 GCACCAAAGCAATCAAGCAAG 59.204 47.619 0.00 0.00 36.85 4.01
1259 1327 1.868469 GCACCAAAGCAATCAAGCAA 58.132 45.000 0.00 0.00 36.85 3.91
1260 1328 0.318869 CGCACCAAAGCAATCAAGCA 60.319 50.000 0.00 0.00 36.85 3.91
1261 1329 1.620413 GCGCACCAAAGCAATCAAGC 61.620 55.000 0.30 0.00 0.00 4.01
1262 1330 0.318869 TGCGCACCAAAGCAATCAAG 60.319 50.000 5.66 0.00 40.78 3.02
1443 1572 9.154847 CTCCTGTTCAAAAATTCAGAAAACTTT 57.845 29.630 0.00 0.00 0.00 2.66
1494 1640 2.124860 TCGTCCTCGGCGAGATCA 60.125 61.111 36.47 17.75 37.69 2.92
1546 1692 0.105246 AGGATCTCGGAGCCCTTGAT 60.105 55.000 11.43 0.00 39.17 2.57
1632 1778 0.397941 TCAGCACTCAAGTTCCCAGG 59.602 55.000 0.00 0.00 0.00 4.45
1639 1785 2.620115 CAACACCAATCAGCACTCAAGT 59.380 45.455 0.00 0.00 0.00 3.16
1713 1866 2.161855 TGCTTCTGGTTGCCATTACTG 58.838 47.619 0.00 0.00 30.82 2.74
1771 1924 3.787001 GGAGGCCTCCCTTGACCG 61.787 72.222 38.25 0.00 43.12 4.79
1920 2073 0.754957 CAGTCCTCTGAGGCTCCGAT 60.755 60.000 19.08 0.00 43.76 4.18
2019 2172 2.754658 GCCGACCTTCTCCCGAGA 60.755 66.667 0.00 0.00 35.27 4.04
2031 2184 1.451747 AGGTACTCTCCGAGCCGAC 60.452 63.158 0.00 0.00 32.04 4.79
2034 2187 0.107116 TCTCAGGTACTCTCCGAGCC 60.107 60.000 0.00 0.00 34.60 4.70
2196 2355 1.422024 TCGGACTTTCCATGGGTTGAA 59.578 47.619 13.02 0.00 35.91 2.69
2208 2367 1.273886 GACTCCAAGCTCTCGGACTTT 59.726 52.381 0.00 0.00 0.00 2.66
2256 2415 1.280133 TCCAGGATCCTGAAGCTGTTG 59.720 52.381 38.37 20.98 46.30 3.33
2419 2578 2.038269 GCGGCGATGGGAACTTCAA 61.038 57.895 12.98 0.00 34.30 2.69
2541 2700 3.089284 TCTCTGCGTCTTGGTCTCAATA 58.911 45.455 0.00 0.00 31.75 1.90
2544 2703 0.884514 CTCTCTGCGTCTTGGTCTCA 59.115 55.000 0.00 0.00 0.00 3.27
2595 2754 1.666189 GCATTGTAGGAAGAAGACCGC 59.334 52.381 0.00 0.00 0.00 5.68
2596 2755 2.932614 CTGCATTGTAGGAAGAAGACCG 59.067 50.000 0.00 0.00 0.00 4.79
2607 2766 8.087750 TGGAAATTTTACCTTTCTGCATTGTAG 58.912 33.333 0.00 0.00 33.93 2.74
2642 2801 4.846779 AAGCACAACCGAAATGTAATGT 57.153 36.364 0.00 0.00 0.00 2.71
2694 2853 7.976135 ATAGCCTTAAATTATCTGAGCACAG 57.024 36.000 4.57 4.57 44.66 3.66
2910 3121 5.240891 ACATCTCATGACCACAAAGTACAG 58.759 41.667 0.00 0.00 0.00 2.74
2921 3132 3.932710 TCAAACGCTAACATCTCATGACC 59.067 43.478 0.00 0.00 0.00 4.02
3008 3219 1.306633 CTAAGCCCCCACCCCTTTC 59.693 63.158 0.00 0.00 0.00 2.62
3009 3220 2.246126 CCTAAGCCCCCACCCCTTT 61.246 63.158 0.00 0.00 0.00 3.11
3013 3224 4.129148 CAGCCTAAGCCCCCACCC 62.129 72.222 0.00 0.00 41.25 4.61
3014 3225 4.129148 CCAGCCTAAGCCCCCACC 62.129 72.222 0.00 0.00 41.25 4.61
3015 3226 4.129148 CCCAGCCTAAGCCCCCAC 62.129 72.222 0.00 0.00 41.25 4.61
3018 3229 4.196778 GAGCCCAGCCTAAGCCCC 62.197 72.222 0.00 0.00 41.25 5.80
3019 3230 4.554036 CGAGCCCAGCCTAAGCCC 62.554 72.222 0.00 0.00 41.25 5.19
3020 3231 4.554036 CCGAGCCCAGCCTAAGCC 62.554 72.222 0.00 0.00 41.25 4.35
3022 3233 1.330655 TTCTCCGAGCCCAGCCTAAG 61.331 60.000 0.00 0.00 0.00 2.18
3229 3546 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3230 3547 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3231 3548 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3232 3549 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3233 3550 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3248 3565 9.046296 CCAAAATAGTGATCTAAACGCTCTTAT 57.954 33.333 0.00 0.00 0.00 1.73
3249 3566 8.038944 ACCAAAATAGTGATCTAAACGCTCTTA 58.961 33.333 0.00 0.00 0.00 2.10
3250 3567 6.879458 ACCAAAATAGTGATCTAAACGCTCTT 59.121 34.615 0.00 0.00 0.00 2.85
3251 3568 6.407202 ACCAAAATAGTGATCTAAACGCTCT 58.593 36.000 0.00 0.00 0.00 4.09
3252 3569 6.663944 ACCAAAATAGTGATCTAAACGCTC 57.336 37.500 0.00 0.00 0.00 5.03
3253 3570 8.732746 AATACCAAAATAGTGATCTAAACGCT 57.267 30.769 0.00 0.00 0.00 5.07
3254 3571 8.827677 AGAATACCAAAATAGTGATCTAAACGC 58.172 33.333 0.00 0.00 0.00 4.84
3260 3577 8.827677 GCGTTTAGAATACCAAAATAGTGATCT 58.172 33.333 0.00 0.00 0.00 2.75
3261 3578 8.827677 AGCGTTTAGAATACCAAAATAGTGATC 58.172 33.333 0.00 0.00 0.00 2.92
3262 3579 8.732746 AGCGTTTAGAATACCAAAATAGTGAT 57.267 30.769 0.00 0.00 0.00 3.06
3263 3580 8.556213 AAGCGTTTAGAATACCAAAATAGTGA 57.444 30.769 0.00 0.00 0.00 3.41
3264 3581 9.620660 AAAAGCGTTTAGAATACCAAAATAGTG 57.379 29.630 0.00 0.00 0.00 2.74
3281 3598 8.606602 CCTCCGTAAACTAATATAAAAGCGTTT 58.393 33.333 2.53 2.53 0.00 3.60
3282 3599 7.225341 CCCTCCGTAAACTAATATAAAAGCGTT 59.775 37.037 0.00 0.00 0.00 4.84
3283 3600 6.703165 CCCTCCGTAAACTAATATAAAAGCGT 59.297 38.462 0.00 0.00 0.00 5.07
3284 3601 6.925165 TCCCTCCGTAAACTAATATAAAAGCG 59.075 38.462 0.00 0.00 0.00 4.68
3285 3602 7.930325 ACTCCCTCCGTAAACTAATATAAAAGC 59.070 37.037 0.00 0.00 0.00 3.51
3289 3606 9.420118 TGTTACTCCCTCCGTAAACTAATATAA 57.580 33.333 0.00 0.00 0.00 0.98
3290 3607 8.995027 TGTTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
3291 3608 7.902920 TGTTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
3292 3609 7.716799 TTGTTACTCCCTCCGTAAACTAATA 57.283 36.000 0.00 0.00 0.00 0.98
3293 3610 6.610075 TTGTTACTCCCTCCGTAAACTAAT 57.390 37.500 0.00 0.00 0.00 1.73
3294 3611 6.041979 ACTTTGTTACTCCCTCCGTAAACTAA 59.958 38.462 0.00 0.00 0.00 2.24
3295 3612 5.539955 ACTTTGTTACTCCCTCCGTAAACTA 59.460 40.000 0.00 0.00 0.00 2.24
3296 3613 4.346127 ACTTTGTTACTCCCTCCGTAAACT 59.654 41.667 0.00 0.00 0.00 2.66
3297 3614 4.635223 ACTTTGTTACTCCCTCCGTAAAC 58.365 43.478 0.00 0.00 0.00 2.01
3298 3615 4.961438 ACTTTGTTACTCCCTCCGTAAA 57.039 40.909 0.00 0.00 0.00 2.01
3299 3616 4.832266 TGTACTTTGTTACTCCCTCCGTAA 59.168 41.667 0.00 0.00 0.00 3.18
3300 3617 4.406456 TGTACTTTGTTACTCCCTCCGTA 58.594 43.478 0.00 0.00 0.00 4.02
3301 3618 3.233507 TGTACTTTGTTACTCCCTCCGT 58.766 45.455 0.00 0.00 0.00 4.69
3302 3619 3.368116 CCTGTACTTTGTTACTCCCTCCG 60.368 52.174 0.00 0.00 0.00 4.63
3303 3620 3.055312 CCCTGTACTTTGTTACTCCCTCC 60.055 52.174 0.00 0.00 0.00 4.30
3304 3621 3.836562 TCCCTGTACTTTGTTACTCCCTC 59.163 47.826 0.00 0.00 0.00 4.30
3305 3622 3.865571 TCCCTGTACTTTGTTACTCCCT 58.134 45.455 0.00 0.00 0.00 4.20
3306 3623 4.628963 TTCCCTGTACTTTGTTACTCCC 57.371 45.455 0.00 0.00 0.00 4.30
3307 3624 6.051179 AGATTCCCTGTACTTTGTTACTCC 57.949 41.667 0.00 0.00 0.00 3.85
3308 3625 7.760340 CAGTAGATTCCCTGTACTTTGTTACTC 59.240 40.741 0.00 0.00 31.84 2.59
3309 3626 7.310485 CCAGTAGATTCCCTGTACTTTGTTACT 60.310 40.741 0.00 0.00 31.84 2.24
3310 3627 6.817140 CCAGTAGATTCCCTGTACTTTGTTAC 59.183 42.308 0.00 0.00 31.84 2.50
3352 3670 4.175516 CGCATCTACCAATTTTGCAATGT 58.824 39.130 0.00 0.00 32.94 2.71
3387 3710 2.410392 CGGGCAAAAGTAAAATTTCCGC 59.590 45.455 0.00 0.00 0.00 5.54
3406 3729 1.232119 AAACTACCAAGGCGAAACGG 58.768 50.000 0.00 0.00 0.00 4.44
3408 3731 3.703286 ACAAAACTACCAAGGCGAAAC 57.297 42.857 0.00 0.00 0.00 2.78
3413 3736 4.116961 GTCCAAAACAAAACTACCAAGGC 58.883 43.478 0.00 0.00 0.00 4.35
3418 3741 5.357596 TGGTACTGTCCAAAACAAAACTACC 59.642 40.000 0.00 0.00 37.45 3.18
3437 3760 4.574828 CACAGGGCAAACTATGTATGGTAC 59.425 45.833 0.00 0.00 0.00 3.34
3439 3762 3.620488 CACAGGGCAAACTATGTATGGT 58.380 45.455 0.00 0.00 0.00 3.55
3441 3764 3.698029 GCACAGGGCAAACTATGTATG 57.302 47.619 0.00 0.00 43.97 2.39
3453 3776 1.400494 CCGTAATTTGTAGCACAGGGC 59.600 52.381 0.00 0.00 45.30 5.19
3454 3777 2.706890 ACCGTAATTTGTAGCACAGGG 58.293 47.619 0.00 0.00 0.00 4.45
3455 3778 4.933400 ACTAACCGTAATTTGTAGCACAGG 59.067 41.667 0.00 0.00 0.00 4.00
3456 3779 6.476243 AACTAACCGTAATTTGTAGCACAG 57.524 37.500 0.00 0.00 0.00 3.66
3457 3780 7.153985 ACTAACTAACCGTAATTTGTAGCACA 58.846 34.615 0.00 0.00 0.00 4.57
3458 3781 7.586714 ACTAACTAACCGTAATTTGTAGCAC 57.413 36.000 0.00 0.00 0.00 4.40
3459 3782 8.522830 ACTACTAACTAACCGTAATTTGTAGCA 58.477 33.333 0.00 0.00 35.27 3.49
3471 3820 9.643652 CGTTCTTTATCTACTACTAACTAACCG 57.356 37.037 0.00 0.00 0.00 4.44
3480 3829 9.790389 CAATCTTCACGTTCTTTATCTACTACT 57.210 33.333 0.00 0.00 0.00 2.57
3485 3834 6.312918 GCACCAATCTTCACGTTCTTTATCTA 59.687 38.462 0.00 0.00 0.00 1.98
3486 3835 5.122396 GCACCAATCTTCACGTTCTTTATCT 59.878 40.000 0.00 0.00 0.00 1.98
3489 3838 4.130857 TGCACCAATCTTCACGTTCTTTA 58.869 39.130 0.00 0.00 0.00 1.85
3490 3839 2.948979 TGCACCAATCTTCACGTTCTTT 59.051 40.909 0.00 0.00 0.00 2.52
3493 3842 2.918131 GCTTGCACCAATCTTCACGTTC 60.918 50.000 0.00 0.00 0.00 3.95
3495 3844 0.593128 GCTTGCACCAATCTTCACGT 59.407 50.000 0.00 0.00 0.00 4.49
3496 3845 0.592637 TGCTTGCACCAATCTTCACG 59.407 50.000 0.00 0.00 0.00 4.35
3498 3847 1.202915 TCCTGCTTGCACCAATCTTCA 60.203 47.619 0.00 0.00 0.00 3.02
3499 3848 1.471684 CTCCTGCTTGCACCAATCTTC 59.528 52.381 0.00 0.00 0.00 2.87
3500 3849 1.202976 ACTCCTGCTTGCACCAATCTT 60.203 47.619 0.00 0.00 0.00 2.40
3618 3975 7.041098 AGTGAAGTTACTGCCACAGAATTAAAG 60.041 37.037 16.44 0.00 35.18 1.85
3628 3985 3.625764 TGAACAAGTGAAGTTACTGCCAC 59.374 43.478 9.22 9.22 0.00 5.01
3637 3994 2.035066 GCTGGCAATGAACAAGTGAAGT 59.965 45.455 0.00 0.00 0.00 3.01
3746 4103 5.017490 GCAATAGGATACCTGCTACTCCTA 58.983 45.833 0.00 0.01 42.85 2.94
3749 4106 5.011125 TGAAGCAATAGGATACCTGCTACTC 59.989 44.000 0.00 0.00 44.17 2.59
3937 4302 6.313905 CCTGCTAACAAAATTCAGACGTATCT 59.686 38.462 0.00 0.00 34.57 1.98
3938 4303 6.312918 TCCTGCTAACAAAATTCAGACGTATC 59.687 38.462 0.00 0.00 0.00 2.24
3995 4366 4.706842 AGGAAAAGTTACTGCCTCTGAA 57.293 40.909 0.00 0.00 0.00 3.02
3996 4367 4.141482 ACAAGGAAAAGTTACTGCCTCTGA 60.141 41.667 2.88 0.00 0.00 3.27
3997 4368 4.137543 ACAAGGAAAAGTTACTGCCTCTG 58.862 43.478 2.88 6.20 0.00 3.35
3998 4369 4.141482 TGACAAGGAAAAGTTACTGCCTCT 60.141 41.667 2.88 0.00 0.00 3.69
3999 4370 4.134563 TGACAAGGAAAAGTTACTGCCTC 58.865 43.478 2.88 0.00 0.00 4.70
4010 4381 2.368221 CCCAGGCAAATGACAAGGAAAA 59.632 45.455 0.00 0.00 0.00 2.29
4019 4390 1.992557 AGTAAGGTCCCAGGCAAATGA 59.007 47.619 0.00 0.00 0.00 2.57
4029 4400 3.279434 CATGGTAAGCAAGTAAGGTCCC 58.721 50.000 0.00 0.00 0.00 4.46
4033 4404 2.609459 CTCGCATGGTAAGCAAGTAAGG 59.391 50.000 0.00 0.00 0.00 2.69
4041 4416 2.285834 CGATGAAACTCGCATGGTAAGC 60.286 50.000 0.00 0.00 0.00 3.09
4229 4608 1.617018 CCGGGGACTTCTGCATCTCA 61.617 60.000 0.00 0.00 0.00 3.27
4234 4613 2.847234 ACACCGGGGACTTCTGCA 60.847 61.111 12.96 0.00 0.00 4.41
4470 4849 5.072040 TCAATACCATCATCGCATATCGT 57.928 39.130 0.00 0.00 39.67 3.73
4509 4888 3.268603 CGACAACCTGCGCACACA 61.269 61.111 5.66 0.00 0.00 3.72
4521 4902 4.415332 GCGAGCTCCCGACGACAA 62.415 66.667 8.47 0.00 0.00 3.18
4574 4955 2.674852 GCTTCAGAATGCATCTTCGTCA 59.325 45.455 0.00 0.00 35.73 4.35
4622 5003 3.764049 GAGAACGCCACGTCACGC 61.764 66.667 0.00 0.00 39.99 5.34
4667 5051 6.852664 AGAAAGAAAACACAAATTCGTCAGT 58.147 32.000 0.00 0.00 0.00 3.41
4675 5059 8.253113 ACACATCTCAAGAAAGAAAACACAAAT 58.747 29.630 0.00 0.00 0.00 2.32
4743 5129 4.712122 TCAACCAAACCAAAGAACAGAC 57.288 40.909 0.00 0.00 0.00 3.51
4759 5145 7.926018 ACTGATAACAAGGACAAAATTTCAACC 59.074 33.333 0.00 0.00 0.00 3.77
4776 5162 6.163476 CAGGCACTTACTACAACTGATAACA 58.837 40.000 0.00 0.00 34.60 2.41
4806 5192 4.981794 ACTAATAACGAGCACAAAATGGC 58.018 39.130 0.00 0.00 0.00 4.40
4825 5211 4.978438 TTAACAGGCACTTACCCAACTA 57.022 40.909 0.00 0.00 34.60 2.24
4831 5217 2.442413 TGGCATTAACAGGCACTTACC 58.558 47.619 2.33 0.00 34.60 2.85
4832 5218 4.485163 CTTTGGCATTAACAGGCACTTAC 58.515 43.478 5.61 0.00 41.56 2.34
4833 5219 3.056891 GCTTTGGCATTAACAGGCACTTA 60.057 43.478 5.61 0.00 41.56 2.24
4834 5220 2.289010 GCTTTGGCATTAACAGGCACTT 60.289 45.455 5.61 0.00 41.56 3.16
4835 5221 1.273327 GCTTTGGCATTAACAGGCACT 59.727 47.619 5.61 0.00 41.56 4.40
4836 5222 1.273327 AGCTTTGGCATTAACAGGCAC 59.727 47.619 5.61 0.00 41.56 5.01
4837 5223 1.631405 AGCTTTGGCATTAACAGGCA 58.369 45.000 2.33 2.33 41.70 4.75
4838 5224 2.749280 AAGCTTTGGCATTAACAGGC 57.251 45.000 0.00 0.00 41.70 4.85
4839 5225 5.111293 CCATAAAGCTTTGGCATTAACAGG 58.889 41.667 22.02 0.00 41.70 4.00
4840 5226 5.723295 ACCATAAAGCTTTGGCATTAACAG 58.277 37.500 22.02 1.78 41.70 3.16
4841 5227 5.736951 ACCATAAAGCTTTGGCATTAACA 57.263 34.783 22.02 0.00 41.70 2.41
4842 5228 8.541133 TTAAACCATAAAGCTTTGGCATTAAC 57.459 30.769 22.02 0.00 41.70 2.01
4843 5229 9.377312 GATTAAACCATAAAGCTTTGGCATTAA 57.623 29.630 22.02 20.86 41.70 1.40
4844 5230 8.757877 AGATTAAACCATAAAGCTTTGGCATTA 58.242 29.630 22.02 14.73 41.70 1.90
4845 5231 7.550196 CAGATTAAACCATAAAGCTTTGGCATT 59.450 33.333 22.02 15.62 41.70 3.56
4846 5232 7.043565 CAGATTAAACCATAAAGCTTTGGCAT 58.956 34.615 22.02 10.58 41.70 4.40
4847 5233 6.014669 ACAGATTAAACCATAAAGCTTTGGCA 60.015 34.615 22.02 1.88 41.70 4.92
4848 5234 6.311200 CACAGATTAAACCATAAAGCTTTGGC 59.689 38.462 22.02 2.42 36.41 4.52
4849 5235 6.311200 GCACAGATTAAACCATAAAGCTTTGG 59.689 38.462 22.02 17.99 39.02 3.28
4850 5236 7.092716 AGCACAGATTAAACCATAAAGCTTTG 58.907 34.615 22.02 6.56 0.00 2.77
4851 5237 7.232118 AGCACAGATTAAACCATAAAGCTTT 57.768 32.000 17.30 17.30 0.00 3.51
4878 5264 4.816385 ACCTATCAACGCACATAATTCTGG 59.184 41.667 0.00 0.00 0.00 3.86
4925 5311 8.177119 AGTTAAACATGCATTTCCTGTTTCTA 57.823 30.769 16.42 6.20 41.01 2.10
4954 5340 5.647589 ACACATGCATTTCTTATGCTGAAG 58.352 37.500 10.67 7.56 44.79 3.02
5034 5420 8.523915 TCTTCGGTCTACTTATTATTGTACCA 57.476 34.615 0.00 0.00 0.00 3.25
5038 5424 9.715121 TGTTTTCTTCGGTCTACTTATTATTGT 57.285 29.630 0.00 0.00 0.00 2.71
5039 5425 9.968743 GTGTTTTCTTCGGTCTACTTATTATTG 57.031 33.333 0.00 0.00 0.00 1.90
5062 5478 8.428186 TTTCACTTTTACTTACTGATTCGTGT 57.572 30.769 0.00 0.00 0.00 4.49
5082 5499 6.509418 TTGGCCTAATGACATAACTTTCAC 57.491 37.500 3.32 0.00 0.00 3.18
5111 5528 4.873827 AGCAACAACGAGAAAACTTCTGTA 59.126 37.500 0.00 0.00 40.87 2.74
5114 5531 4.965119 AAGCAACAACGAGAAAACTTCT 57.035 36.364 0.00 0.00 44.21 2.85
5119 5536 5.303747 TCTTCAAAGCAACAACGAGAAAA 57.696 34.783 0.00 0.00 0.00 2.29
5123 5540 6.253298 TCATTTTTCTTCAAAGCAACAACGAG 59.747 34.615 0.00 0.00 0.00 4.18
5169 5586 2.787473 ACGGGATCATGCTCTCAAAA 57.213 45.000 0.00 0.00 0.00 2.44
5170 5587 3.197766 ACTTACGGGATCATGCTCTCAAA 59.802 43.478 0.00 0.00 0.00 2.69
5171 5588 2.766263 ACTTACGGGATCATGCTCTCAA 59.234 45.455 0.00 0.00 0.00 3.02
5172 5589 2.388735 ACTTACGGGATCATGCTCTCA 58.611 47.619 0.00 0.00 0.00 3.27
5173 5590 3.460857 AACTTACGGGATCATGCTCTC 57.539 47.619 0.00 0.00 0.00 3.20
5174 5591 3.914426 AAACTTACGGGATCATGCTCT 57.086 42.857 0.00 0.00 0.00 4.09
5175 5592 4.192317 AGAAAACTTACGGGATCATGCTC 58.808 43.478 0.00 0.00 0.00 4.26
5176 5593 4.192317 GAGAAAACTTACGGGATCATGCT 58.808 43.478 0.00 0.00 0.00 3.79
5177 5594 3.938963 TGAGAAAACTTACGGGATCATGC 59.061 43.478 0.00 0.00 0.00 4.06
5178 5595 4.034510 GCTGAGAAAACTTACGGGATCATG 59.965 45.833 0.00 0.00 0.00 3.07
5179 5596 4.192317 GCTGAGAAAACTTACGGGATCAT 58.808 43.478 0.00 0.00 0.00 2.45
5180 5597 3.007506 TGCTGAGAAAACTTACGGGATCA 59.992 43.478 0.00 0.00 0.00 2.92
5181 5598 3.371285 GTGCTGAGAAAACTTACGGGATC 59.629 47.826 0.00 0.00 0.00 3.36
5182 5599 3.244422 TGTGCTGAGAAAACTTACGGGAT 60.244 43.478 0.00 0.00 0.00 3.85
5183 5600 2.103432 TGTGCTGAGAAAACTTACGGGA 59.897 45.455 0.00 0.00 0.00 5.14
5184 5601 2.480419 CTGTGCTGAGAAAACTTACGGG 59.520 50.000 0.00 0.00 0.00 5.28
5185 5602 2.480419 CCTGTGCTGAGAAAACTTACGG 59.520 50.000 0.00 0.00 0.00 4.02
5186 5603 3.390135 TCCTGTGCTGAGAAAACTTACG 58.610 45.455 0.00 0.00 0.00 3.18
5187 5604 5.751243 TTTCCTGTGCTGAGAAAACTTAC 57.249 39.130 0.00 0.00 0.00 2.34
5188 5605 5.827797 ACATTTCCTGTGCTGAGAAAACTTA 59.172 36.000 0.00 0.00 36.48 2.24
5189 5606 4.646492 ACATTTCCTGTGCTGAGAAAACTT 59.354 37.500 0.00 0.00 36.48 2.66
5190 5607 4.210331 ACATTTCCTGTGCTGAGAAAACT 58.790 39.130 0.00 0.00 36.48 2.66
5191 5608 4.574599 ACATTTCCTGTGCTGAGAAAAC 57.425 40.909 0.00 0.00 36.48 2.43
5192 5609 5.689383 GTACATTTCCTGTGCTGAGAAAA 57.311 39.130 0.00 0.00 38.92 2.29
5219 5636 6.463995 ACATTTCCTGTGCTTGTCTAAAAA 57.536 33.333 0.00 0.00 36.48 1.94
5220 5637 6.966021 GTACATTTCCTGTGCTTGTCTAAAA 58.034 36.000 0.00 0.00 38.92 1.52
5221 5638 6.554334 GTACATTTCCTGTGCTTGTCTAAA 57.446 37.500 0.00 0.00 38.92 1.85
5261 5678 7.740519 AAAAGCGCATGTATATCAAAAACTC 57.259 32.000 11.47 0.00 0.00 3.01
5264 5681 7.704472 CCCTTAAAAGCGCATGTATATCAAAAA 59.296 33.333 11.47 0.00 0.00 1.94
5265 5682 7.199766 CCCTTAAAAGCGCATGTATATCAAAA 58.800 34.615 11.47 0.00 0.00 2.44
5266 5683 6.238897 CCCCTTAAAAGCGCATGTATATCAAA 60.239 38.462 11.47 0.00 0.00 2.69
5267 5684 5.240623 CCCCTTAAAAGCGCATGTATATCAA 59.759 40.000 11.47 0.00 0.00 2.57
5268 5685 4.759693 CCCCTTAAAAGCGCATGTATATCA 59.240 41.667 11.47 0.00 0.00 2.15
5269 5686 5.001232 TCCCCTTAAAAGCGCATGTATATC 58.999 41.667 11.47 0.00 0.00 1.63
5270 5687 4.980573 TCCCCTTAAAAGCGCATGTATAT 58.019 39.130 11.47 0.00 0.00 0.86
5271 5688 4.385825 CTCCCCTTAAAAGCGCATGTATA 58.614 43.478 11.47 0.00 0.00 1.47
5272 5689 3.214328 CTCCCCTTAAAAGCGCATGTAT 58.786 45.455 11.47 0.00 0.00 2.29
5273 5690 2.639065 CTCCCCTTAAAAGCGCATGTA 58.361 47.619 11.47 0.00 0.00 2.29
5274 5691 1.463674 CTCCCCTTAAAAGCGCATGT 58.536 50.000 11.47 0.00 0.00 3.21
5275 5692 0.101219 GCTCCCCTTAAAAGCGCATG 59.899 55.000 11.47 0.00 0.00 4.06
5276 5693 0.323360 TGCTCCCCTTAAAAGCGCAT 60.323 50.000 11.47 0.00 38.90 4.73
5277 5694 0.538516 TTGCTCCCCTTAAAAGCGCA 60.539 50.000 11.47 0.00 38.90 6.09
5278 5695 0.109272 GTTGCTCCCCTTAAAAGCGC 60.109 55.000 0.00 0.00 38.90 5.92
5279 5696 1.534729 AGTTGCTCCCCTTAAAAGCG 58.465 50.000 0.00 0.00 38.90 4.68
5280 5697 3.687125 ACTAGTTGCTCCCCTTAAAAGC 58.313 45.455 0.00 0.00 36.56 3.51
5281 5698 6.713450 TGTTAACTAGTTGCTCCCCTTAAAAG 59.287 38.462 18.56 0.00 0.00 2.27
5282 5699 6.603224 TGTTAACTAGTTGCTCCCCTTAAAA 58.397 36.000 18.56 0.00 0.00 1.52
5283 5700 6.190346 TGTTAACTAGTTGCTCCCCTTAAA 57.810 37.500 18.56 0.00 0.00 1.52
5284 5701 5.829062 TGTTAACTAGTTGCTCCCCTTAA 57.171 39.130 18.56 0.00 0.00 1.85
5285 5702 5.801380 CTTGTTAACTAGTTGCTCCCCTTA 58.199 41.667 18.56 0.00 0.00 2.69
5286 5703 4.652822 CTTGTTAACTAGTTGCTCCCCTT 58.347 43.478 18.56 0.00 0.00 3.95
5287 5704 3.559384 GCTTGTTAACTAGTTGCTCCCCT 60.559 47.826 18.56 0.00 0.00 4.79
5288 5705 2.747989 GCTTGTTAACTAGTTGCTCCCC 59.252 50.000 18.56 0.00 0.00 4.81
5289 5706 2.415512 CGCTTGTTAACTAGTTGCTCCC 59.584 50.000 18.56 2.19 0.00 4.30
5290 5707 2.159693 GCGCTTGTTAACTAGTTGCTCC 60.160 50.000 18.56 3.87 0.00 4.70
5291 5708 2.737252 AGCGCTTGTTAACTAGTTGCTC 59.263 45.455 22.71 7.49 31.54 4.26
5292 5709 2.737252 GAGCGCTTGTTAACTAGTTGCT 59.263 45.455 25.90 25.90 36.20 3.91
5293 5710 2.159693 GGAGCGCTTGTTAACTAGTTGC 60.160 50.000 18.56 20.12 0.00 4.17
5294 5711 3.326747 AGGAGCGCTTGTTAACTAGTTG 58.673 45.455 18.56 11.43 0.00 3.16
5295 5712 3.679824 AGGAGCGCTTGTTAACTAGTT 57.320 42.857 13.26 13.68 0.00 2.24
5296 5713 3.586892 GAAGGAGCGCTTGTTAACTAGT 58.413 45.455 13.26 0.00 0.00 2.57
5297 5714 2.599082 CGAAGGAGCGCTTGTTAACTAG 59.401 50.000 13.26 12.07 0.00 2.57
5298 5715 2.602878 CGAAGGAGCGCTTGTTAACTA 58.397 47.619 13.26 0.00 0.00 2.24
5299 5716 1.429463 CGAAGGAGCGCTTGTTAACT 58.571 50.000 13.26 0.25 0.00 2.24
5300 5717 3.949313 CGAAGGAGCGCTTGTTAAC 57.051 52.632 13.26 0.00 0.00 2.01
5314 5731 2.680913 CGTTGCAAGGCTCCCGAAG 61.681 63.158 6.16 0.00 0.00 3.79
5315 5732 2.463589 ATCGTTGCAAGGCTCCCGAA 62.464 55.000 14.22 0.00 0.00 4.30
5316 5733 2.852495 GATCGTTGCAAGGCTCCCGA 62.852 60.000 14.22 11.74 0.00 5.14
5317 5734 2.436646 ATCGTTGCAAGGCTCCCG 60.437 61.111 14.22 6.41 0.00 5.14
5318 5735 1.372087 CTGATCGTTGCAAGGCTCCC 61.372 60.000 17.51 6.71 0.00 4.30
5319 5736 1.986575 GCTGATCGTTGCAAGGCTCC 61.987 60.000 17.51 8.73 0.00 4.70
5320 5737 1.427020 GCTGATCGTTGCAAGGCTC 59.573 57.895 14.22 14.31 0.00 4.70
5321 5738 2.393768 CGCTGATCGTTGCAAGGCT 61.394 57.895 14.22 4.59 0.00 4.58
5322 5739 2.099062 CGCTGATCGTTGCAAGGC 59.901 61.111 14.22 2.25 0.00 4.35
5331 5748 2.792290 CGCCAAGTGACGCTGATCG 61.792 63.158 0.00 0.00 45.38 3.69
5332 5749 3.084579 CGCCAAGTGACGCTGATC 58.915 61.111 0.00 0.00 0.00 2.92
5339 5756 3.482783 GAGAGCGCGCCAAGTGAC 61.483 66.667 30.33 10.54 0.00 3.67
5340 5757 3.921767 CTGAGAGCGCGCCAAGTGA 62.922 63.158 30.33 6.19 0.00 3.41
5341 5758 3.485431 CTGAGAGCGCGCCAAGTG 61.485 66.667 30.33 12.20 0.00 3.16
5347 5764 3.934684 GAATGGCTGAGAGCGCGC 61.935 66.667 26.66 26.66 43.62 6.86
5348 5765 3.624300 CGAATGGCTGAGAGCGCG 61.624 66.667 0.00 0.00 43.62 6.86
5349 5766 3.934684 GCGAATGGCTGAGAGCGC 61.935 66.667 0.00 0.00 43.62 5.92
5350 5767 3.267860 GGCGAATGGCTGAGAGCG 61.268 66.667 0.00 0.00 43.62 5.03
5351 5768 2.124983 TGGCGAATGGCTGAGAGC 60.125 61.111 0.00 0.00 42.94 4.09
5352 5769 2.169789 CGTGGCGAATGGCTGAGAG 61.170 63.158 0.00 0.00 42.94 3.20
5353 5770 2.125552 CGTGGCGAATGGCTGAGA 60.126 61.111 0.00 0.00 42.94 3.27
5354 5771 2.434884 ACGTGGCGAATGGCTGAG 60.435 61.111 0.00 0.00 42.94 3.35
5355 5772 2.741985 CACGTGGCGAATGGCTGA 60.742 61.111 7.95 0.00 42.94 4.26
5356 5773 3.027170 GACACGTGGCGAATGGCTG 62.027 63.158 21.57 0.00 42.94 4.85
5357 5774 2.742372 GACACGTGGCGAATGGCT 60.742 61.111 21.57 0.00 42.94 4.75
5367 5784 4.700365 TCCAGAGCGCGACACGTG 62.700 66.667 15.48 15.48 46.11 4.49
5368 5785 4.702081 GTCCAGAGCGCGACACGT 62.702 66.667 12.10 0.00 46.11 4.49
5415 5832 0.767687 CGAAAACGCGTGCGATTTTT 59.232 45.000 22.32 16.97 42.71 1.94
5416 5833 0.994737 CCGAAAACGCGTGCGATTTT 60.995 50.000 24.61 20.57 42.71 1.82
5417 5834 1.439693 CCGAAAACGCGTGCGATTT 60.440 52.632 24.61 20.98 44.68 2.17
5418 5835 2.172419 CCGAAAACGCGTGCGATT 59.828 55.556 24.61 12.92 42.83 3.34
5419 5836 4.439472 GCCGAAAACGCGTGCGAT 62.439 61.111 24.61 6.15 42.83 4.58
5421 5838 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
5422 5839 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
5423 5840 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
5424 5841 2.471862 TTAAAAAGCCGAAAACGCGT 57.528 40.000 5.58 5.58 0.00 6.01
5425 5842 2.406245 CGTTTAAAAAGCCGAAAACGCG 60.406 45.455 3.53 3.53 44.94 6.01
5426 5843 3.130797 CGTTTAAAAAGCCGAAAACGC 57.869 42.857 6.30 0.00 44.94 4.84
5428 5845 5.453281 AAACCGTTTAAAAAGCCGAAAAC 57.547 34.783 0.00 0.00 0.00 2.43
5429 5846 6.477669 AAAAACCGTTTAAAAAGCCGAAAA 57.522 29.167 0.00 0.00 0.00 2.29
5449 5866 2.694109 ACATCGAAAAACCCCGGAAAAA 59.306 40.909 0.73 0.00 0.00 1.94
5450 5867 2.308690 ACATCGAAAAACCCCGGAAAA 58.691 42.857 0.73 0.00 0.00 2.29
5451 5868 1.984066 ACATCGAAAAACCCCGGAAA 58.016 45.000 0.73 0.00 0.00 3.13
5452 5869 1.984066 AACATCGAAAAACCCCGGAA 58.016 45.000 0.73 0.00 0.00 4.30
5453 5870 1.984066 AAACATCGAAAAACCCCGGA 58.016 45.000 0.73 0.00 0.00 5.14
5454 5871 2.399448 CAAAACATCGAAAAACCCCGG 58.601 47.619 0.00 0.00 0.00 5.73
5455 5872 2.223852 ACCAAAACATCGAAAAACCCCG 60.224 45.455 0.00 0.00 0.00 5.73
5456 5873 3.462483 ACCAAAACATCGAAAAACCCC 57.538 42.857 0.00 0.00 0.00 4.95
5457 5874 5.113383 AGAAACCAAAACATCGAAAAACCC 58.887 37.500 0.00 0.00 0.00 4.11
5458 5875 5.233476 GGAGAAACCAAAACATCGAAAAACC 59.767 40.000 0.00 0.00 38.79 3.27
5459 5876 5.233476 GGGAGAAACCAAAACATCGAAAAAC 59.767 40.000 0.00 0.00 41.20 2.43
5460 5877 5.353111 GGGAGAAACCAAAACATCGAAAAA 58.647 37.500 0.00 0.00 41.20 1.94
5461 5878 4.202172 GGGGAGAAACCAAAACATCGAAAA 60.202 41.667 0.00 0.00 41.20 2.29
5462 5879 3.319689 GGGGAGAAACCAAAACATCGAAA 59.680 43.478 0.00 0.00 41.20 3.46
5463 5880 2.888414 GGGGAGAAACCAAAACATCGAA 59.112 45.455 0.00 0.00 41.20 3.71
5464 5881 2.510613 GGGGAGAAACCAAAACATCGA 58.489 47.619 0.00 0.00 41.20 3.59
5465 5882 1.199097 CGGGGAGAAACCAAAACATCG 59.801 52.381 0.00 0.00 41.20 3.84
5466 5883 1.544246 CCGGGGAGAAACCAAAACATC 59.456 52.381 0.00 0.00 41.20 3.06
5467 5884 1.133294 ACCGGGGAGAAACCAAAACAT 60.133 47.619 6.32 0.00 41.20 2.71
5468 5885 0.259356 ACCGGGGAGAAACCAAAACA 59.741 50.000 6.32 0.00 41.20 2.83
5469 5886 0.956633 GACCGGGGAGAAACCAAAAC 59.043 55.000 6.32 0.00 41.20 2.43
5470 5887 0.848053 AGACCGGGGAGAAACCAAAA 59.152 50.000 6.32 0.00 41.20 2.44
5471 5888 0.848053 AAGACCGGGGAGAAACCAAA 59.152 50.000 6.32 0.00 41.20 3.28
5472 5889 0.848053 AAAGACCGGGGAGAAACCAA 59.152 50.000 6.32 0.00 41.20 3.67
5473 5890 0.399075 GAAAGACCGGGGAGAAACCA 59.601 55.000 6.32 0.00 41.20 3.67
5474 5891 0.691332 AGAAAGACCGGGGAGAAACC 59.309 55.000 6.32 0.00 38.08 3.27
5475 5892 2.563261 AAGAAAGACCGGGGAGAAAC 57.437 50.000 6.32 0.00 0.00 2.78
5476 5893 2.027469 GCTAAGAAAGACCGGGGAGAAA 60.027 50.000 6.32 0.00 0.00 2.52
5477 5894 1.553704 GCTAAGAAAGACCGGGGAGAA 59.446 52.381 6.32 0.00 0.00 2.87
5478 5895 1.192428 GCTAAGAAAGACCGGGGAGA 58.808 55.000 6.32 0.00 0.00 3.71
5479 5896 1.196012 AGCTAAGAAAGACCGGGGAG 58.804 55.000 6.32 0.00 0.00 4.30
5480 5897 1.652947 AAGCTAAGAAAGACCGGGGA 58.347 50.000 6.32 0.00 0.00 4.81
5481 5898 2.491675 AAAGCTAAGAAAGACCGGGG 57.508 50.000 6.32 0.00 0.00 5.73
5482 5899 2.415512 CGAAAAGCTAAGAAAGACCGGG 59.584 50.000 6.32 0.00 0.00 5.73
5483 5900 3.323243 TCGAAAAGCTAAGAAAGACCGG 58.677 45.455 0.00 0.00 0.00 5.28
5484 5901 6.642683 TTATCGAAAAGCTAAGAAAGACCG 57.357 37.500 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.