Multiple sequence alignment - TraesCS4A01G280600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G280600 chr4A 100.000 5788 0 0 1 5788 589010555 589016342 0.000000e+00 10689
1 TraesCS4A01G280600 chr4A 74.587 303 60 16 5469 5761 580477232 580476937 3.660000e-22 117
2 TraesCS4A01G280600 chr4A 84.874 119 15 2 5469 5584 588511821 588511703 3.660000e-22 117
3 TraesCS4A01G280600 chr4D 93.220 2124 97 18 372 2487 13248020 13245936 0.000000e+00 3081
4 TraesCS4A01G280600 chr4D 80.076 1054 122 51 4060 5071 13244086 13243079 0.000000e+00 702
5 TraesCS4A01G280600 chr4D 90.576 382 27 4 1 374 13248497 13248117 1.120000e-136 497
6 TraesCS4A01G280600 chr4D 93.171 205 14 0 5213 5417 469158440 469158644 9.430000e-78 302
7 TraesCS4A01G280600 chr4D 82.620 374 27 17 2569 2939 13245931 13245593 4.390000e-76 296
8 TraesCS4A01G280600 chr4D 97.479 119 3 0 2937 3055 55352559 55352441 2.730000e-48 204
9 TraesCS4A01G280600 chr4D 96.694 121 4 0 2938 3058 93458901 93458781 9.830000e-48 202
10 TraesCS4A01G280600 chr4D 93.939 132 6 2 2924 3055 27156408 27156537 1.270000e-46 198
11 TraesCS4A01G280600 chr4D 96.610 118 4 0 2938 3055 367720770 367720887 4.580000e-46 196
12 TraesCS4A01G280600 chr4D 91.262 103 8 1 3637 3738 13244687 13244585 7.820000e-29 139
13 TraesCS4A01G280600 chr4B 93.799 1645 76 19 861 2493 24015281 24013651 0.000000e+00 2449
14 TraesCS4A01G280600 chr4B 94.724 417 20 2 3376 3791 24012911 24012496 0.000000e+00 647
15 TraesCS4A01G280600 chr4B 94.920 374 16 3 2569 2939 24013659 24013286 3.010000e-162 582
16 TraesCS4A01G280600 chr4B 86.513 519 43 14 4631 5131 24011828 24011319 3.940000e-151 545
17 TraesCS4A01G280600 chr4B 91.867 332 20 1 3054 3378 24013287 24012956 1.900000e-124 457
18 TraesCS4A01G280600 chr4B 87.980 391 33 6 3949 4332 24012423 24012040 3.180000e-122 449
19 TraesCS4A01G280600 chr4B 95.402 87 3 1 2486 2571 315723274 315723360 2.810000e-28 137
20 TraesCS4A01G280600 chr3B 91.332 1246 64 24 861 2080 454667995 454669222 0.000000e+00 1663
21 TraesCS4A01G280600 chr3B 89.325 815 59 15 4625 5421 454671530 454672334 0.000000e+00 998
22 TraesCS4A01G280600 chr3B 94.964 417 19 2 3376 3791 454670348 454670763 0.000000e+00 652
23 TraesCS4A01G280600 chr3B 95.674 393 14 3 2102 2493 454669219 454669609 3.810000e-176 628
24 TraesCS4A01G280600 chr3B 94.906 373 17 2 2569 2939 454669601 454669973 3.010000e-162 582
25 TraesCS4A01G280600 chr3B 88.402 388 31 6 3949 4329 454670836 454671216 6.840000e-124 455
26 TraesCS4A01G280600 chr3B 91.566 332 21 1 3054 3378 454669972 454670303 8.840000e-123 451
27 TraesCS4A01G280600 chr3B 87.898 314 27 6 5459 5772 454672620 454672922 5.510000e-95 359
28 TraesCS4A01G280600 chr3B 92.718 206 15 0 5212 5417 762589071 762588866 1.220000e-76 298
29 TraesCS4A01G280600 chr3B 95.402 87 2 2 2486 2571 380679547 380679462 2.810000e-28 137
30 TraesCS4A01G280600 chr5B 93.750 208 10 3 5214 5421 477558031 477557827 5.630000e-80 309
31 TraesCS4A01G280600 chr5B 94.253 87 3 2 2486 2571 51843298 51843383 1.310000e-26 132
32 TraesCS4A01G280600 chr5B 91.753 97 5 1 2480 2573 472738517 472738613 1.310000e-26 132
33 TraesCS4A01G280600 chr5B 89.691 97 7 1 2480 2573 472738386 472738482 2.830000e-23 121
34 TraesCS4A01G280600 chr2D 92.891 211 14 1 5211 5421 640367309 640367518 7.290000e-79 305
35 TraesCS4A01G280600 chr2D 92.481 133 10 0 2928 3060 599946103 599946235 2.130000e-44 191
36 TraesCS4A01G280600 chr2D 84.967 153 19 3 52 202 27551859 27552009 1.000000e-32 152
37 TraesCS4A01G280600 chr6D 92.344 209 14 2 5214 5421 13964705 13964912 4.390000e-76 296
38 TraesCS4A01G280600 chr6D 89.922 129 10 2 73 200 431936463 431936337 4.640000e-36 163
39 TraesCS4A01G280600 chr7A 92.308 208 15 1 5214 5421 127763180 127762974 1.580000e-75 294
40 TraesCS4A01G280600 chr7A 90.909 77 6 1 5507 5582 287884762 287884686 1.030000e-17 102
41 TraesCS4A01G280600 chr1A 93.069 202 13 1 5214 5415 534625784 534625984 1.580000e-75 294
42 TraesCS4A01G280600 chr6A 92.647 204 14 1 5214 5417 89598637 89598839 5.670000e-75 292
43 TraesCS4A01G280600 chr6A 84.868 152 18 4 55 204 447626914 447627062 1.300000e-31 148
44 TraesCS4A01G280600 chr6A 74.679 312 61 17 5469 5773 610480828 610480528 7.880000e-24 122
45 TraesCS4A01G280600 chr5D 97.479 119 2 1 2938 3055 461071643 461071761 9.830000e-48 202
46 TraesCS4A01G280600 chr5D 86.429 140 16 3 65 202 110800156 110800294 3.610000e-32 150
47 TraesCS4A01G280600 chr1D 97.479 119 2 1 2938 3055 470620964 470620846 9.830000e-48 202
48 TraesCS4A01G280600 chr7B 96.639 119 4 0 2937 3055 589467041 589467159 1.270000e-46 198
49 TraesCS4A01G280600 chr7B 83.575 207 22 6 5 204 708102018 708102219 3.560000e-42 183
50 TraesCS4A01G280600 chr2B 78.448 348 44 16 5416 5751 651366425 651366097 1.270000e-46 198
51 TraesCS4A01G280600 chr2A 79.677 310 36 16 5429 5735 5649563 5649848 1.270000e-46 198
52 TraesCS4A01G280600 chr2A 92.941 85 4 1 2486 2570 166854868 166854950 7.880000e-24 122
53 TraesCS4A01G280600 chr7D 95.122 123 5 1 2938 3059 208816715 208816593 5.920000e-45 193
54 TraesCS4A01G280600 chr3D 78.305 295 38 16 5416 5703 229480103 229479828 3.590000e-37 167
55 TraesCS4A01G280600 chr3D 81.250 208 22 9 5 203 349639907 349639708 1.000000e-32 152
56 TraesCS4A01G280600 chr3D 92.222 90 6 1 2485 2573 537914133 537914044 6.090000e-25 126
57 TraesCS4A01G280600 chr5A 88.148 135 13 3 75 208 536903437 536903569 2.160000e-34 158
58 TraesCS4A01G280600 chr5A 92.045 88 6 1 2486 2572 55159064 55158977 7.880000e-24 122
59 TraesCS4A01G280600 chr5A 83.740 123 16 3 5469 5588 116569311 116569432 4.740000e-21 113
60 TraesCS4A01G280600 chr1B 83.333 168 22 6 37 202 334901607 334901444 3.610000e-32 150
61 TraesCS4A01G280600 chr3A 93.023 86 4 2 2486 2570 65949494 65949410 2.190000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G280600 chr4A 589010555 589016342 5787 False 10689.000000 10689 100.000000 1 5788 1 chr4A.!!$F1 5787
1 TraesCS4A01G280600 chr4D 13243079 13248497 5418 True 943.000000 3081 87.550800 1 5071 5 chr4D.!!$R3 5070
2 TraesCS4A01G280600 chr4B 24011319 24015281 3962 True 854.833333 2449 91.633833 861 5131 6 chr4B.!!$R1 4270
3 TraesCS4A01G280600 chr3B 454667995 454672922 4927 False 723.500000 1663 91.758375 861 5772 8 chr3B.!!$F1 4911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 343 0.037303 ACTGGTTGATCTGCACCCTG 59.963 55.0 6.79 0.00 34.73 4.45 F
353 362 0.172352 GGAGAGACCTCACTTGCTCG 59.828 60.0 0.00 0.00 41.20 5.03 F
1568 1682 0.036765 TGAATTAGGCGCCTCGTGTT 60.037 50.0 36.73 22.61 0.00 3.32 F
2964 3131 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 1653 1.062587 CGCCTAATTCAAACAGCGGAG 59.937 52.381 0.0 0.0 39.89 4.63 R
1807 1942 2.056985 CCCCCACACCACCAAATTG 58.943 57.895 0.0 0.0 0.00 2.32 R
2945 3112 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.0 0.0 0.00 4.79 R
4950 5893 0.037790 GGAGAGACAGCAGACCACAC 60.038 60.000 0.0 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.780413 TGGAAATGTTTGAAAATTTGTAAAAGC 57.220 25.926 0.00 0.00 0.00 3.51
118 123 9.899226 TGAAATTATGAGTGATAGTGTATCTCG 57.101 33.333 0.00 0.00 36.17 4.04
134 139 5.523552 TGTATCTCGGTGATGTAGCAAAATG 59.476 40.000 2.94 0.00 36.65 2.32
232 241 7.306953 TCAAAATATTTGGTTGCGGTTAGTAC 58.693 34.615 0.39 0.00 0.00 2.73
247 256 6.671641 GCGGTTAGTACTTTTAGTTAGCTTGC 60.672 42.308 0.00 0.00 0.00 4.01
258 267 1.422977 TTAGCTTGCAGTCCACCCCA 61.423 55.000 0.00 0.00 0.00 4.96
270 279 2.000048 TCCACCCCAGCTCCTAATTTT 59.000 47.619 0.00 0.00 0.00 1.82
272 281 2.760650 CCACCCCAGCTCCTAATTTTTC 59.239 50.000 0.00 0.00 0.00 2.29
273 282 2.760650 CACCCCAGCTCCTAATTTTTCC 59.239 50.000 0.00 0.00 0.00 3.13
299 308 1.818060 CCGCCATTGAATGTCTCCAAA 59.182 47.619 4.27 0.00 0.00 3.28
302 311 2.417787 GCCATTGAATGTCTCCAAAGGC 60.418 50.000 4.27 0.00 45.64 4.35
334 343 0.037303 ACTGGTTGATCTGCACCCTG 59.963 55.000 6.79 0.00 34.73 4.45
336 345 1.133181 TGGTTGATCTGCACCCTGGA 61.133 55.000 0.00 0.00 28.85 3.86
353 362 0.172352 GGAGAGACCTCACTTGCTCG 59.828 60.000 0.00 0.00 41.20 5.03
362 371 2.417933 CCTCACTTGCTCGAGATTTTGG 59.582 50.000 18.75 4.84 0.00 3.28
391 499 8.882415 AACATCGGAACAAATTATATAGTCGT 57.118 30.769 0.00 0.00 0.00 4.34
420 528 6.701841 CGTGCATGGTCTAGACTAATACAATT 59.298 38.462 21.88 0.00 0.00 2.32
427 535 8.421784 TGGTCTAGACTAATACAATTAGCAAGG 58.578 37.037 21.88 0.00 0.00 3.61
493 601 6.472887 ACACATATATTACATAGGGTGTGGC 58.527 40.000 0.00 0.00 42.24 5.01
494 602 6.272324 ACACATATATTACATAGGGTGTGGCT 59.728 38.462 0.00 0.00 42.24 4.75
495 603 7.168219 CACATATATTACATAGGGTGTGGCTT 58.832 38.462 0.00 0.00 42.24 4.35
564 672 2.401967 GCAGTGAGCCACATCATCC 58.598 57.895 0.00 0.00 36.74 3.51
567 675 1.524621 GTGAGCCACATCATCCGGG 60.525 63.158 0.00 0.00 34.08 5.73
568 676 1.995066 TGAGCCACATCATCCGGGT 60.995 57.895 0.00 0.00 0.00 5.28
569 677 1.524621 GAGCCACATCATCCGGGTG 60.525 63.158 8.97 8.97 0.00 4.61
570 678 3.211963 GCCACATCATCCGGGTGC 61.212 66.667 10.80 0.00 0.00 5.01
571 679 2.516930 CCACATCATCCGGGTGCC 60.517 66.667 10.80 0.00 0.00 5.01
572 680 2.591753 CACATCATCCGGGTGCCT 59.408 61.111 10.80 0.00 0.00 4.75
573 681 1.524621 CACATCATCCGGGTGCCTC 60.525 63.158 10.80 0.00 0.00 4.70
574 682 2.280389 CATCATCCGGGTGCCTCG 60.280 66.667 10.80 0.00 0.00 4.63
575 683 2.443952 ATCATCCGGGTGCCTCGA 60.444 61.111 10.80 0.00 0.00 4.04
576 684 2.797278 ATCATCCGGGTGCCTCGAC 61.797 63.158 10.80 0.00 0.00 4.20
577 685 3.770040 CATCCGGGTGCCTCGACA 61.770 66.667 0.00 0.00 0.00 4.35
586 694 1.339929 GGTGCCTCGACAAAACCAATT 59.660 47.619 0.00 0.00 0.00 2.32
617 725 8.713708 TTAAAATAAATTTGGGAGTGGACTCA 57.286 30.769 8.99 0.00 37.30 3.41
624 732 2.295253 GGGAGTGGACTCACATTACG 57.705 55.000 8.99 0.00 45.53 3.18
641 749 2.568623 ACGAAATGTTTCTGGCTCCT 57.431 45.000 4.20 0.00 35.07 3.69
658 766 4.321974 GGCTCCTCAAAATTTTCCAATCGT 60.322 41.667 0.00 0.00 0.00 3.73
661 769 5.076873 TCCTCAAAATTTTCCAATCGTCCT 58.923 37.500 0.00 0.00 0.00 3.85
711 819 3.545633 GACAAATCGTTCTGACAACAGC 58.454 45.455 0.00 0.00 43.17 4.40
725 833 0.393808 AACAGCAGTGGTTGTTCGGT 60.394 50.000 0.00 0.00 43.85 4.69
726 834 1.095228 ACAGCAGTGGTTGTTCGGTG 61.095 55.000 0.00 0.00 34.53 4.94
731 839 0.253610 AGTGGTTGTTCGGTGGTTCA 59.746 50.000 0.00 0.00 0.00 3.18
732 840 1.096416 GTGGTTGTTCGGTGGTTCAA 58.904 50.000 0.00 0.00 0.00 2.69
733 841 1.473278 GTGGTTGTTCGGTGGTTCAAA 59.527 47.619 0.00 0.00 0.00 2.69
734 842 2.094649 GTGGTTGTTCGGTGGTTCAAAA 60.095 45.455 0.00 0.00 0.00 2.44
735 843 2.561419 TGGTTGTTCGGTGGTTCAAAAA 59.439 40.909 0.00 0.00 0.00 1.94
736 844 3.195825 TGGTTGTTCGGTGGTTCAAAAAT 59.804 39.130 0.00 0.00 0.00 1.82
737 845 3.799963 GGTTGTTCGGTGGTTCAAAAATC 59.200 43.478 0.00 0.00 0.00 2.17
738 846 4.440940 GGTTGTTCGGTGGTTCAAAAATCT 60.441 41.667 0.00 0.00 0.00 2.40
743 851 3.435327 TCGGTGGTTCAAAAATCTCGATG 59.565 43.478 0.00 0.00 0.00 3.84
746 854 5.445939 CGGTGGTTCAAAAATCTCGATGTAG 60.446 44.000 0.00 0.00 0.00 2.74
792 900 6.313905 GCATGTAGTACTTGTGATAAAGCTGT 59.686 38.462 15.40 0.00 0.00 4.40
850 958 4.963237 TGTTTTCAAAATACACATGCGC 57.037 36.364 0.00 0.00 0.00 6.09
924 1032 1.342674 ACCCTAGATAACGTCCTGCCA 60.343 52.381 0.00 0.00 0.00 4.92
977 1085 1.932511 CGCAAAGCAGAGAGAGAATCC 59.067 52.381 0.00 0.00 33.66 3.01
1018 1126 2.003548 ATGACTCCCCAAGCCCTCC 61.004 63.158 0.00 0.00 0.00 4.30
1019 1127 2.285743 GACTCCCCAAGCCCTCCT 60.286 66.667 0.00 0.00 0.00 3.69
1020 1128 2.285743 ACTCCCCAAGCCCTCCTC 60.286 66.667 0.00 0.00 0.00 3.71
1021 1129 3.093172 CTCCCCAAGCCCTCCTCC 61.093 72.222 0.00 0.00 0.00 4.30
1022 1130 3.626596 TCCCCAAGCCCTCCTCCT 61.627 66.667 0.00 0.00 0.00 3.69
1023 1131 3.093172 CCCCAAGCCCTCCTCCTC 61.093 72.222 0.00 0.00 0.00 3.71
1116 1230 1.987855 CCTGCTCCCCAAGTACGGA 60.988 63.158 0.00 0.00 0.00 4.69
1539 1653 3.426292 GGGATTCAGTCACTTTTTAGCGC 60.426 47.826 0.00 0.00 0.00 5.92
1568 1682 0.036765 TGAATTAGGCGCCTCGTGTT 60.037 50.000 36.73 22.61 0.00 3.32
1662 1779 6.679638 GCTTGATATCATGACATGTGCACTTT 60.680 38.462 19.41 2.38 0.00 2.66
1736 1867 7.284034 CCAGTAGATGTTTCATTCCTAGCATTT 59.716 37.037 0.00 0.00 0.00 2.32
1807 1942 2.373540 TTAGTCGTGGTGGCACATAC 57.626 50.000 20.82 16.06 44.52 2.39
1972 2115 6.077993 TCCATATGATACTTCACCTACTGCT 58.922 40.000 3.65 0.00 33.85 4.24
2070 2216 2.817901 CATCGTAAGTTCCTAACCCGG 58.182 52.381 0.00 0.00 39.48 5.73
2119 2265 6.152379 GCCTGTTGTCAAAATTAAAGGAGAG 58.848 40.000 0.00 0.00 0.00 3.20
2248 2395 8.377799 ACCTCTTTCTTTACTTAATCCCGTTTA 58.622 33.333 0.00 0.00 0.00 2.01
2249 2396 9.392259 CCTCTTTCTTTACTTAATCCCGTTTAT 57.608 33.333 0.00 0.00 0.00 1.40
2476 2636 5.412594 TGGAGAACAGAAGAAAAATGATCCG 59.587 40.000 0.00 0.00 0.00 4.18
2487 2653 8.911247 AAGAAAAATGATCCGCTGTATTTTAC 57.089 30.769 0.00 0.00 33.11 2.01
2489 2655 8.398665 AGAAAAATGATCCGCTGTATTTTACTC 58.601 33.333 0.00 0.00 33.11 2.59
2492 2658 3.709653 TGATCCGCTGTATTTTACTCCCT 59.290 43.478 0.00 0.00 0.00 4.20
2493 2659 3.814005 TCCGCTGTATTTTACTCCCTC 57.186 47.619 0.00 0.00 0.00 4.30
2494 2660 2.433239 TCCGCTGTATTTTACTCCCTCC 59.567 50.000 0.00 0.00 0.00 4.30
2496 2662 2.159142 CGCTGTATTTTACTCCCTCCGT 60.159 50.000 0.00 0.00 0.00 4.69
2497 2663 3.455327 GCTGTATTTTACTCCCTCCGTC 58.545 50.000 0.00 0.00 0.00 4.79
2498 2664 3.740452 GCTGTATTTTACTCCCTCCGTCC 60.740 52.174 0.00 0.00 0.00 4.79
2499 2665 2.767960 TGTATTTTACTCCCTCCGTCCC 59.232 50.000 0.00 0.00 0.00 4.46
2500 2666 1.961133 ATTTTACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
2501 2667 1.732117 TTTTACTCCCTCCGTCCCAA 58.268 50.000 0.00 0.00 0.00 4.12
2502 2668 1.732117 TTTACTCCCTCCGTCCCAAA 58.268 50.000 0.00 0.00 0.00 3.28
2503 2669 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
2504 2670 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2505 2671 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2506 2672 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2507 2673 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2508 2674 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2509 2675 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2510 2676 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2511 2677 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2512 2678 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2513 2679 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2514 2680 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
2515 2681 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
2516 2682 5.935789 TCCGTCCCAAAATAAGTGTCTTAAG 59.064 40.000 0.00 0.00 0.00 1.85
2517 2683 5.391629 CCGTCCCAAAATAAGTGTCTTAAGC 60.392 44.000 0.00 0.00 0.00 3.09
2518 2684 5.411669 CGTCCCAAAATAAGTGTCTTAAGCT 59.588 40.000 0.00 0.00 0.00 3.74
2519 2685 6.072673 CGTCCCAAAATAAGTGTCTTAAGCTT 60.073 38.462 3.48 3.48 0.00 3.74
2520 2686 7.118680 CGTCCCAAAATAAGTGTCTTAAGCTTA 59.881 37.037 0.86 0.86 0.00 3.09
2521 2687 8.451748 GTCCCAAAATAAGTGTCTTAAGCTTAG 58.548 37.037 6.24 1.77 0.00 2.18
2522 2688 8.161425 TCCCAAAATAAGTGTCTTAAGCTTAGT 58.839 33.333 6.24 0.00 0.00 2.24
2523 2689 9.444600 CCCAAAATAAGTGTCTTAAGCTTAGTA 57.555 33.333 6.24 0.00 0.00 1.82
2530 2696 8.959705 AAGTGTCTTAAGCTTAGTACAACTTT 57.040 30.769 18.98 13.13 0.00 2.66
2531 2697 8.366671 AGTGTCTTAAGCTTAGTACAACTTTG 57.633 34.615 18.98 0.00 0.00 2.77
2532 2698 7.985752 AGTGTCTTAAGCTTAGTACAACTTTGT 59.014 33.333 18.98 0.00 44.86 2.83
2533 2699 9.252962 GTGTCTTAAGCTTAGTACAACTTTGTA 57.747 33.333 18.98 0.00 42.35 2.41
2548 2714 8.179509 ACAACTTTGTACTATAGTGAGACACT 57.820 34.615 15.90 9.32 42.86 3.55
2549 2715 8.639761 ACAACTTTGTACTATAGTGAGACACTT 58.360 33.333 15.90 1.55 39.71 3.16
2557 2723 9.530633 GTACTATAGTGAGACACTTATTTTGGG 57.469 37.037 15.90 0.00 42.59 4.12
2558 2724 8.375493 ACTATAGTGAGACACTTATTTTGGGA 57.625 34.615 4.10 0.00 42.59 4.37
2559 2725 8.258708 ACTATAGTGAGACACTTATTTTGGGAC 58.741 37.037 4.10 0.00 42.59 4.46
2560 2726 4.315803 AGTGAGACACTTATTTTGGGACG 58.684 43.478 0.00 0.00 42.59 4.79
2561 2727 3.435671 GTGAGACACTTATTTTGGGACGG 59.564 47.826 0.00 0.00 0.00 4.79
2562 2728 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2563 2729 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2564 2730 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2565 2731 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2566 2732 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2567 2733 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2568 2734 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2569 2735 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2570 2736 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2571 2737 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
2572 2738 1.961133 TTGGGACGGAGGGAGTATTT 58.039 50.000 0.00 0.00 0.00 1.40
2573 2739 1.492764 TGGGACGGAGGGAGTATTTC 58.507 55.000 0.00 0.00 0.00 2.17
2574 2740 0.757512 GGGACGGAGGGAGTATTTCC 59.242 60.000 0.00 0.00 46.00 3.13
2653 2820 1.545582 CTTGAAACCGCCACCATTGAT 59.454 47.619 0.00 0.00 0.00 2.57
2757 2924 1.346068 CTGGAGACCCTATTAGGCAGC 59.654 57.143 4.01 0.00 32.73 5.25
2768 2935 2.472695 TTAGGCAGCGAGTCAACAAT 57.527 45.000 0.00 0.00 0.00 2.71
2792 2959 0.603707 ACTGCTGGTGACCATCAACG 60.604 55.000 4.03 0.00 36.73 4.10
2846 3013 6.183360 CGTTGGATGCATTTCTTTCCTTATCT 60.183 38.462 0.00 0.00 0.00 1.98
2847 3014 6.704289 TGGATGCATTTCTTTCCTTATCTG 57.296 37.500 0.00 0.00 0.00 2.90
2864 3031 6.095300 CCTTATCTGTGGCAAATTGTGATGTA 59.905 38.462 0.00 0.00 0.00 2.29
2930 3097 1.893808 CTGTGCAGGGTGACGCTTT 60.894 57.895 0.00 0.00 0.00 3.51
2934 3101 0.323302 TGCAGGGTGACGCTTTATGA 59.677 50.000 0.00 0.00 0.00 2.15
2937 3104 1.066143 CAGGGTGACGCTTTATGACCT 60.066 52.381 0.00 0.00 0.00 3.85
2938 3105 2.167693 CAGGGTGACGCTTTATGACCTA 59.832 50.000 0.00 0.00 0.00 3.08
2939 3106 2.167900 AGGGTGACGCTTTATGACCTAC 59.832 50.000 0.00 0.00 0.00 3.18
2940 3107 2.167900 GGGTGACGCTTTATGACCTACT 59.832 50.000 0.00 0.00 0.00 2.57
2941 3108 3.445857 GGTGACGCTTTATGACCTACTC 58.554 50.000 0.00 0.00 0.00 2.59
2942 3109 3.445857 GTGACGCTTTATGACCTACTCC 58.554 50.000 0.00 0.00 0.00 3.85
2943 3110 2.429610 TGACGCTTTATGACCTACTCCC 59.570 50.000 0.00 0.00 0.00 4.30
2944 3111 2.694109 GACGCTTTATGACCTACTCCCT 59.306 50.000 0.00 0.00 0.00 4.20
2945 3112 2.694109 ACGCTTTATGACCTACTCCCTC 59.306 50.000 0.00 0.00 0.00 4.30
2946 3113 2.036089 CGCTTTATGACCTACTCCCTCC 59.964 54.545 0.00 0.00 0.00 4.30
2947 3114 2.036089 GCTTTATGACCTACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
2948 3115 3.297736 CTTTATGACCTACTCCCTCCGT 58.702 50.000 0.00 0.00 0.00 4.69
2949 3116 2.653234 TATGACCTACTCCCTCCGTC 57.347 55.000 0.00 0.00 0.00 4.79
2950 3117 0.106116 ATGACCTACTCCCTCCGTCC 60.106 60.000 0.00 0.00 0.00 4.79
2951 3118 1.823041 GACCTACTCCCTCCGTCCG 60.823 68.421 0.00 0.00 0.00 4.79
2952 3119 2.262774 GACCTACTCCCTCCGTCCGA 62.263 65.000 0.00 0.00 0.00 4.55
2953 3120 1.077212 CCTACTCCCTCCGTCCGAA 60.077 63.158 0.00 0.00 0.00 4.30
2954 3121 0.682209 CCTACTCCCTCCGTCCGAAA 60.682 60.000 0.00 0.00 0.00 3.46
2955 3122 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
2956 3123 1.547372 CTACTCCCTCCGTCCGAAAAA 59.453 52.381 0.00 0.00 0.00 1.94
2957 3124 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
2958 3125 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
2959 3126 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2960 3127 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
2961 3128 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
2962 3129 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
2963 3130 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
2964 3131 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
2965 3132 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
2966 3133 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
2967 3134 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
2968 3135 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
2969 3136 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
2970 3137 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
2971 3138 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
2972 3139 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
2973 3140 4.261572 CGAAAAAGCTTGTCCCTCAAATGA 60.262 41.667 0.00 0.00 35.48 2.57
2974 3141 5.600696 GAAAAAGCTTGTCCCTCAAATGAA 58.399 37.500 0.00 0.00 35.48 2.57
2975 3142 5.813513 AAAAGCTTGTCCCTCAAATGAAT 57.186 34.783 0.00 0.00 35.48 2.57
2976 3143 4.796038 AAGCTTGTCCCTCAAATGAATG 57.204 40.909 0.00 0.00 35.48 2.67
2977 3144 3.771216 AGCTTGTCCCTCAAATGAATGT 58.229 40.909 0.00 0.00 35.48 2.71
2978 3145 4.922206 AGCTTGTCCCTCAAATGAATGTA 58.078 39.130 0.00 0.00 35.48 2.29
2979 3146 5.513233 AGCTTGTCCCTCAAATGAATGTAT 58.487 37.500 0.00 0.00 35.48 2.29
2980 3147 5.591877 AGCTTGTCCCTCAAATGAATGTATC 59.408 40.000 0.00 0.00 35.48 2.24
2981 3148 5.591877 GCTTGTCCCTCAAATGAATGTATCT 59.408 40.000 0.00 0.00 35.48 1.98
2982 3149 6.767902 GCTTGTCCCTCAAATGAATGTATCTA 59.232 38.462 0.00 0.00 35.48 1.98
2983 3150 7.041508 GCTTGTCCCTCAAATGAATGTATCTAG 60.042 40.741 0.00 0.00 35.48 2.43
2984 3151 6.291377 TGTCCCTCAAATGAATGTATCTAGC 58.709 40.000 0.00 0.00 0.00 3.42
2985 3152 6.126796 TGTCCCTCAAATGAATGTATCTAGCA 60.127 38.462 0.00 0.00 0.00 3.49
2986 3153 6.203723 GTCCCTCAAATGAATGTATCTAGCAC 59.796 42.308 0.00 0.00 0.00 4.40
2987 3154 5.471456 CCCTCAAATGAATGTATCTAGCACC 59.529 44.000 0.00 0.00 0.00 5.01
2988 3155 6.057533 CCTCAAATGAATGTATCTAGCACCA 58.942 40.000 0.00 0.00 0.00 4.17
2989 3156 6.543465 CCTCAAATGAATGTATCTAGCACCAA 59.457 38.462 0.00 0.00 0.00 3.67
2990 3157 7.255035 CCTCAAATGAATGTATCTAGCACCAAG 60.255 40.741 0.00 0.00 0.00 3.61
2991 3158 7.112122 TCAAATGAATGTATCTAGCACCAAGT 58.888 34.615 0.00 0.00 0.00 3.16
2992 3159 7.611467 TCAAATGAATGTATCTAGCACCAAGTT 59.389 33.333 0.00 0.00 0.00 2.66
2993 3160 8.892723 CAAATGAATGTATCTAGCACCAAGTTA 58.107 33.333 0.00 0.00 0.00 2.24
2994 3161 8.668510 AATGAATGTATCTAGCACCAAGTTAG 57.331 34.615 0.00 0.00 32.79 2.34
2995 3162 7.182817 TGAATGTATCTAGCACCAAGTTAGT 57.817 36.000 0.00 0.00 33.25 2.24
2996 3163 8.301252 TGAATGTATCTAGCACCAAGTTAGTA 57.699 34.615 0.00 0.00 33.25 1.82
2997 3164 8.195436 TGAATGTATCTAGCACCAAGTTAGTAC 58.805 37.037 0.00 0.00 33.25 2.73
2998 3165 7.899648 ATGTATCTAGCACCAAGTTAGTACT 57.100 36.000 0.00 0.00 33.25 2.73
2999 3166 8.991783 ATGTATCTAGCACCAAGTTAGTACTA 57.008 34.615 0.00 0.00 33.17 1.82
3000 3167 8.447924 TGTATCTAGCACCAAGTTAGTACTAG 57.552 38.462 2.23 3.10 34.00 2.57
3001 3168 8.270030 TGTATCTAGCACCAAGTTAGTACTAGA 58.730 37.037 12.12 12.12 41.93 2.43
3002 3169 9.287373 GTATCTAGCACCAAGTTAGTACTAGAT 57.713 37.037 20.88 20.88 46.01 1.98
3004 3171 8.674263 TCTAGCACCAAGTTAGTACTAGATAC 57.326 38.462 7.17 0.00 35.99 2.24
3005 3172 8.270030 TCTAGCACCAAGTTAGTACTAGATACA 58.730 37.037 7.17 0.00 35.99 2.29
3006 3173 7.899648 AGCACCAAGTTAGTACTAGATACAT 57.100 36.000 2.23 0.00 36.09 2.29
3007 3174 7.942990 AGCACCAAGTTAGTACTAGATACATC 58.057 38.462 2.23 0.00 36.09 3.06
3008 3175 7.014422 AGCACCAAGTTAGTACTAGATACATCC 59.986 40.741 2.23 0.00 36.09 3.51
3009 3176 7.201884 GCACCAAGTTAGTACTAGATACATCCA 60.202 40.741 2.23 0.00 36.09 3.41
3010 3177 8.861086 CACCAAGTTAGTACTAGATACATCCAT 58.139 37.037 2.23 0.00 36.09 3.41
3011 3178 9.435570 ACCAAGTTAGTACTAGATACATCCATT 57.564 33.333 2.23 0.00 36.09 3.16
3019 3186 9.073475 AGTACTAGATACATCCATTTGAGAGAC 57.927 37.037 0.00 0.00 36.09 3.36
3020 3187 7.904558 ACTAGATACATCCATTTGAGAGACA 57.095 36.000 0.00 0.00 0.00 3.41
3021 3188 8.311395 ACTAGATACATCCATTTGAGAGACAA 57.689 34.615 0.00 0.00 36.65 3.18
3022 3189 8.420222 ACTAGATACATCCATTTGAGAGACAAG 58.580 37.037 0.00 0.00 39.77 3.16
3023 3190 6.054295 AGATACATCCATTTGAGAGACAAGC 58.946 40.000 0.00 0.00 39.77 4.01
3024 3191 4.298103 ACATCCATTTGAGAGACAAGCT 57.702 40.909 0.00 0.00 39.77 3.74
3025 3192 4.660168 ACATCCATTTGAGAGACAAGCTT 58.340 39.130 0.00 0.00 39.77 3.74
3026 3193 4.458295 ACATCCATTTGAGAGACAAGCTTG 59.542 41.667 24.84 24.84 39.77 4.01
3027 3194 3.415212 TCCATTTGAGAGACAAGCTTGG 58.585 45.455 29.18 12.28 39.77 3.61
3028 3195 2.490903 CCATTTGAGAGACAAGCTTGGG 59.509 50.000 29.18 13.19 39.77 4.12
3029 3196 3.415212 CATTTGAGAGACAAGCTTGGGA 58.585 45.455 29.18 7.03 39.77 4.37
3030 3197 2.550830 TTGAGAGACAAGCTTGGGAC 57.449 50.000 29.18 19.11 34.20 4.46
3031 3198 1.423584 TGAGAGACAAGCTTGGGACA 58.576 50.000 29.18 17.71 0.00 4.02
3032 3199 2.172505 TTGAGAGACAAGCTTGGGACAA 59.827 45.455 29.18 21.59 37.48 3.18
3033 3200 3.745480 TTGAGAGACAAGCTTGGGACAAG 60.745 47.826 29.18 3.71 37.48 3.16
3043 3210 3.811031 TGGGACAAGCTTTTTCGGA 57.189 47.368 0.00 0.00 31.92 4.55
3044 3211 1.314730 TGGGACAAGCTTTTTCGGAC 58.685 50.000 0.00 0.00 31.92 4.79
3045 3212 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
3046 3213 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
3047 3214 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
3048 3215 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
3049 3216 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
3050 3217 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
3051 3218 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
3052 3219 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
3132 3304 9.675464 AATAAAATCAAATCTTCCATGCATGTT 57.325 25.926 24.58 9.64 0.00 2.71
3136 3308 6.099159 TCAAATCTTCCATGCATGTTTGAA 57.901 33.333 27.12 21.02 32.93 2.69
3153 3325 3.750639 TGAACAAACAACACTTCCGTC 57.249 42.857 0.00 0.00 0.00 4.79
3167 3339 1.416243 TCCGTCCACTACACCAACTT 58.584 50.000 0.00 0.00 0.00 2.66
3187 3359 1.064825 CCCTTGGACCTACAAGTGGT 58.935 55.000 5.37 0.00 44.89 4.16
3264 3443 1.846124 GTGTGGGAGGGAGGGTCAA 60.846 63.158 0.00 0.00 0.00 3.18
3275 3454 1.363744 GAGGGTCAACATGAAGAGCG 58.636 55.000 0.00 0.00 33.28 5.03
3303 3482 7.641411 GTGCAACATGTATCATGACTTCATAAC 59.359 37.037 15.25 0.00 36.32 1.89
3338 3517 2.423947 GGCAGATGATTGGGAATCCTGT 60.424 50.000 0.00 0.00 37.09 4.00
3361 3540 0.877649 GGCACGTCGAGATGCATGAT 60.878 55.000 19.48 0.00 43.93 2.45
3421 3647 1.376553 GCAAGAGGCAGTCCCACTC 60.377 63.158 0.00 0.00 43.97 3.51
3437 3664 1.533731 CACTCGCAAAAATGTACCCGT 59.466 47.619 0.00 0.00 0.00 5.28
3462 3689 4.452114 TCGCAATATCATATGCCTGTGAAC 59.548 41.667 0.00 0.00 39.39 3.18
3477 3704 2.434884 AACCTGTGATCCTGCGCG 60.435 61.111 0.00 0.00 0.00 6.86
3534 4022 5.014202 GTGAGGACTTTCTAGAGGTCTTCT 58.986 45.833 25.29 16.65 37.12 2.85
3613 4107 6.569737 ACATCTTAGATCTCCATGGTATCCT 58.430 40.000 19.75 12.80 0.00 3.24
3731 4287 2.097110 TCCTGTGTGGTGACCTTACT 57.903 50.000 2.11 0.00 37.07 2.24
3807 4473 4.783764 AGGAAATTTAAAACCGCCAGAG 57.216 40.909 0.00 0.00 0.00 3.35
3814 4480 1.398692 AAAACCGCCAGAGAAGCAAA 58.601 45.000 0.00 0.00 0.00 3.68
3835 4501 7.588512 GCAAAATTGCGAATATATCCTTCTCT 58.411 34.615 1.90 0.00 45.11 3.10
3836 4502 8.078596 GCAAAATTGCGAATATATCCTTCTCTT 58.921 33.333 1.90 0.00 45.11 2.85
3837 4503 9.390795 CAAAATTGCGAATATATCCTTCTCTTG 57.609 33.333 0.00 0.00 0.00 3.02
3838 4504 7.678947 AATTGCGAATATATCCTTCTCTTGG 57.321 36.000 0.00 0.00 0.00 3.61
3839 4505 5.152623 TGCGAATATATCCTTCTCTTGGG 57.847 43.478 0.00 0.00 0.00 4.12
3840 4506 4.838423 TGCGAATATATCCTTCTCTTGGGA 59.162 41.667 0.00 0.00 35.96 4.37
3841 4507 5.485353 TGCGAATATATCCTTCTCTTGGGAT 59.515 40.000 0.00 0.00 43.77 3.85
3842 4508 5.814705 GCGAATATATCCTTCTCTTGGGATG 59.185 44.000 4.91 0.00 41.78 3.51
3850 4516 3.380637 CCTTCTCTTGGGATGCATTCTTG 59.619 47.826 4.63 0.00 0.00 3.02
3908 4579 2.869101 TGGCATGTTGGCTACTTACA 57.131 45.000 0.01 0.00 44.10 2.41
3936 4625 8.715998 GCCCAAAAACTAGTTAACTACTTCTAC 58.284 37.037 11.38 0.00 38.33 2.59
4016 4739 2.508361 GGGTTGGATCCCAGCATTG 58.492 57.895 16.17 0.00 46.30 2.82
4049 4772 9.515226 ACTAGACATTTTTACCAGAAATTGCTA 57.485 29.630 0.00 0.00 0.00 3.49
4052 4775 9.643693 AGACATTTTTACCAGAAATTGCTAATG 57.356 29.630 3.68 3.68 0.00 1.90
4082 4863 8.156994 GGTTGTGTACCACAGTATTAAAAAGA 57.843 34.615 0.00 0.00 45.39 2.52
4185 4973 7.009357 GGCTAAATAAGACTACAACTTCTGTCG 59.991 40.741 0.00 0.00 39.64 4.35
4197 4985 0.544357 TTCTGTCGGGACCCACATCT 60.544 55.000 12.15 0.00 0.00 2.90
4242 5030 9.241919 TCCATGTTATTATAAGTAATGCCATGG 57.758 33.333 20.71 20.71 46.22 3.66
4249 5037 5.689383 ATAAGTAATGCCATGGCTTAACG 57.311 39.130 35.53 0.00 42.51 3.18
4250 5038 1.676006 AGTAATGCCATGGCTTAACGC 59.324 47.619 35.53 20.21 42.51 4.84
4257 5045 2.741878 GCCATGGCTTAACGCTCTCTTA 60.742 50.000 29.98 0.00 39.13 2.10
4290 5078 3.126858 TCTTGAAACAGAATATGGCGCAC 59.873 43.478 10.83 0.00 0.00 5.34
4310 5098 4.618927 GCACACTGCATGGTTCAATTGTAT 60.619 41.667 5.13 0.00 44.26 2.29
4357 5145 5.897377 ATTGTCAAATGGCAGTTAGGTAC 57.103 39.130 0.00 0.00 0.00 3.34
4358 5146 4.359434 TGTCAAATGGCAGTTAGGTACA 57.641 40.909 0.00 0.27 0.00 2.90
4370 5158 6.560253 CAGTTAGGTACACTGCAATTTCTT 57.440 37.500 0.00 0.00 35.52 2.52
4374 5162 4.460263 AGGTACACTGCAATTTCTTGTCA 58.540 39.130 0.00 0.00 34.69 3.58
4455 5243 7.548196 TCATTTGTTTTGGATATACCGACTC 57.452 36.000 0.00 0.00 42.61 3.36
4456 5244 7.335627 TCATTTGTTTTGGATATACCGACTCT 58.664 34.615 0.00 0.00 42.61 3.24
4457 5245 7.827236 TCATTTGTTTTGGATATACCGACTCTT 59.173 33.333 0.00 0.00 42.61 2.85
4458 5246 7.605410 TTTGTTTTGGATATACCGACTCTTC 57.395 36.000 0.00 0.00 42.61 2.87
4459 5247 6.540438 TGTTTTGGATATACCGACTCTTCT 57.460 37.500 0.00 0.00 42.61 2.85
4460 5248 6.338146 TGTTTTGGATATACCGACTCTTCTG 58.662 40.000 0.00 0.00 42.61 3.02
4461 5249 6.070995 TGTTTTGGATATACCGACTCTTCTGT 60.071 38.462 0.00 0.00 42.61 3.41
4462 5250 5.515797 TTGGATATACCGACTCTTCTGTG 57.484 43.478 0.00 0.00 42.61 3.66
4463 5251 3.889538 TGGATATACCGACTCTTCTGTGG 59.110 47.826 0.00 0.00 42.61 4.17
4464 5252 4.142790 GGATATACCGACTCTTCTGTGGA 58.857 47.826 0.00 0.00 0.00 4.02
4465 5253 4.023021 GGATATACCGACTCTTCTGTGGAC 60.023 50.000 0.00 0.00 0.00 4.02
4466 5254 1.542492 TACCGACTCTTCTGTGGACC 58.458 55.000 0.00 0.00 0.00 4.46
4467 5255 1.186267 ACCGACTCTTCTGTGGACCC 61.186 60.000 0.00 0.00 0.00 4.46
4468 5256 0.900647 CCGACTCTTCTGTGGACCCT 60.901 60.000 0.00 0.00 0.00 4.34
4525 5325 1.735198 CGCGTCGTGAGGCCTTTTA 60.735 57.895 6.77 0.00 38.86 1.52
4527 5327 1.084289 GCGTCGTGAGGCCTTTTAAT 58.916 50.000 6.77 0.00 36.30 1.40
4530 5330 3.311596 GCGTCGTGAGGCCTTTTAATATT 59.688 43.478 6.77 0.00 36.30 1.28
4540 5340 8.099537 TGAGGCCTTTTAATATTTTGATTGCAA 58.900 29.630 6.77 0.00 0.00 4.08
4567 5480 7.236529 AGGTCGTTGGTAGAATATGTAGGATA 58.763 38.462 0.00 0.00 0.00 2.59
4576 5489 9.523168 GGTAGAATATGTAGGATAGAAGAGTGT 57.477 37.037 0.00 0.00 0.00 3.55
4584 5497 7.907389 TGTAGGATAGAAGAGTGTTCAATGTT 58.093 34.615 2.50 0.00 0.00 2.71
4586 5499 7.913674 AGGATAGAAGAGTGTTCAATGTTTC 57.086 36.000 2.50 0.00 0.00 2.78
4587 5500 7.453393 AGGATAGAAGAGTGTTCAATGTTTCA 58.547 34.615 2.50 0.00 0.00 2.69
4589 5502 8.233190 GGATAGAAGAGTGTTCAATGTTTCAAG 58.767 37.037 2.50 0.00 0.00 3.02
4590 5503 8.908786 ATAGAAGAGTGTTCAATGTTTCAAGA 57.091 30.769 2.50 0.00 0.00 3.02
4593 5506 7.500227 AGAAGAGTGTTCAATGTTTCAAGATCA 59.500 33.333 2.50 0.00 0.00 2.92
4594 5507 7.199541 AGAGTGTTCAATGTTTCAAGATCAG 57.800 36.000 0.00 0.00 0.00 2.90
4596 5509 7.933577 AGAGTGTTCAATGTTTCAAGATCAGTA 59.066 33.333 0.00 0.00 0.00 2.74
4598 5511 6.798959 GTGTTCAATGTTTCAAGATCAGTAGC 59.201 38.462 0.00 0.00 0.00 3.58
4599 5512 6.072508 TGTTCAATGTTTCAAGATCAGTAGCC 60.073 38.462 0.00 0.00 0.00 3.93
4601 5514 6.182627 TCAATGTTTCAAGATCAGTAGCCAT 58.817 36.000 0.00 0.00 0.00 4.40
4603 5516 5.164620 TGTTTCAAGATCAGTAGCCATGA 57.835 39.130 0.00 0.00 0.00 3.07
4608 5521 2.756907 AGATCAGTAGCCATGACACCT 58.243 47.619 0.00 0.00 0.00 4.00
4609 5522 3.110705 AGATCAGTAGCCATGACACCTT 58.889 45.455 0.00 0.00 0.00 3.50
4611 5524 4.716784 AGATCAGTAGCCATGACACCTTTA 59.283 41.667 0.00 0.00 0.00 1.85
4612 5525 5.367937 AGATCAGTAGCCATGACACCTTTAT 59.632 40.000 0.00 0.00 0.00 1.40
4613 5526 5.435686 TCAGTAGCCATGACACCTTTATT 57.564 39.130 0.00 0.00 0.00 1.40
4614 5527 5.815581 TCAGTAGCCATGACACCTTTATTT 58.184 37.500 0.00 0.00 0.00 1.40
4615 5528 5.880332 TCAGTAGCCATGACACCTTTATTTC 59.120 40.000 0.00 0.00 0.00 2.17
4616 5529 5.647658 CAGTAGCCATGACACCTTTATTTCA 59.352 40.000 0.00 0.00 0.00 2.69
4617 5530 5.882557 AGTAGCCATGACACCTTTATTTCAG 59.117 40.000 0.00 0.00 0.00 3.02
4618 5531 3.445096 AGCCATGACACCTTTATTTCAGC 59.555 43.478 0.00 0.00 0.00 4.26
4620 5533 3.763360 CCATGACACCTTTATTTCAGCCA 59.237 43.478 0.00 0.00 0.00 4.75
4623 5536 4.469657 TGACACCTTTATTTCAGCCAGTT 58.530 39.130 0.00 0.00 0.00 3.16
4624 5537 4.892934 TGACACCTTTATTTCAGCCAGTTT 59.107 37.500 0.00 0.00 0.00 2.66
4625 5538 5.009610 TGACACCTTTATTTCAGCCAGTTTC 59.990 40.000 0.00 0.00 0.00 2.78
4626 5539 4.892934 ACACCTTTATTTCAGCCAGTTTCA 59.107 37.500 0.00 0.00 0.00 2.69
4628 5541 5.691754 CACCTTTATTTCAGCCAGTTTCAAC 59.308 40.000 0.00 0.00 0.00 3.18
4629 5542 4.917415 CCTTTATTTCAGCCAGTTTCAACG 59.083 41.667 0.00 0.00 0.00 4.10
4648 5570 9.810545 TTTCAACGTCTGTCAACATATATATCA 57.189 29.630 0.00 0.00 0.00 2.15
4677 5599 2.305928 CACCAATGTTCACCTGGTCAA 58.694 47.619 0.00 0.00 41.60 3.18
4707 5631 3.568007 CGAGGATCCAAACTTGAAACCAA 59.432 43.478 15.82 0.00 0.00 3.67
4713 5637 6.936335 GGATCCAAACTTGAAACCAATGATTT 59.064 34.615 6.95 0.00 0.00 2.17
4714 5638 7.118245 GGATCCAAACTTGAAACCAATGATTTC 59.882 37.037 6.95 0.00 36.73 2.17
4719 5644 6.254281 ACTTGAAACCAATGATTTCTACCG 57.746 37.500 1.38 0.00 37.05 4.02
4726 5651 4.216257 ACCAATGATTTCTACCGCATATGC 59.784 41.667 18.08 18.08 37.78 3.14
4731 5656 4.826733 TGATTTCTACCGCATATGCCAAAT 59.173 37.500 21.77 16.10 37.91 2.32
4736 5661 5.616270 TCTACCGCATATGCCAAATTCTAA 58.384 37.500 21.77 0.00 37.91 2.10
4739 5664 5.072741 ACCGCATATGCCAAATTCTAATCT 58.927 37.500 21.77 0.00 37.91 2.40
4740 5665 6.237901 ACCGCATATGCCAAATTCTAATCTA 58.762 36.000 21.77 0.00 37.91 1.98
4741 5666 6.149474 ACCGCATATGCCAAATTCTAATCTAC 59.851 38.462 21.77 0.00 37.91 2.59
4742 5667 6.372659 CCGCATATGCCAAATTCTAATCTACT 59.627 38.462 21.77 0.00 37.91 2.57
4743 5668 7.413438 CCGCATATGCCAAATTCTAATCTACTC 60.413 40.741 21.77 0.00 37.91 2.59
4744 5669 7.459486 GCATATGCCAAATTCTAATCTACTCG 58.541 38.462 17.26 0.00 34.31 4.18
4745 5670 7.413438 GCATATGCCAAATTCTAATCTACTCGG 60.413 40.741 17.26 0.00 34.31 4.63
4746 5671 5.353394 TGCCAAATTCTAATCTACTCGGT 57.647 39.130 0.00 0.00 0.00 4.69
4747 5672 6.474140 TGCCAAATTCTAATCTACTCGGTA 57.526 37.500 0.00 0.00 0.00 4.02
4761 5690 2.424956 ACTCGGTAGTATTTGACGGTCC 59.575 50.000 5.55 0.00 32.84 4.46
4765 5694 3.861689 CGGTAGTATTTGACGGTCCTTTC 59.138 47.826 5.55 0.00 0.00 2.62
4767 5696 5.485620 GGTAGTATTTGACGGTCCTTTCTT 58.514 41.667 5.55 0.00 0.00 2.52
4768 5697 5.350640 GGTAGTATTTGACGGTCCTTTCTTG 59.649 44.000 5.55 0.00 0.00 3.02
4839 5773 4.578105 CAGCAAATTCTCCTTGGATCCTAC 59.422 45.833 14.23 0.00 0.00 3.18
4852 5786 2.841881 GGATCCTACTGTGGGGTTGTTA 59.158 50.000 10.52 0.00 0.00 2.41
4853 5787 3.370209 GGATCCTACTGTGGGGTTGTTAC 60.370 52.174 10.52 0.00 0.00 2.50
4855 5789 2.369532 TCCTACTGTGGGGTTGTTACAC 59.630 50.000 10.52 0.00 35.75 2.90
4856 5790 2.409975 CTACTGTGGGGTTGTTACACG 58.590 52.381 0.00 0.00 37.92 4.49
4857 5791 0.831966 ACTGTGGGGTTGTTACACGA 59.168 50.000 0.00 0.00 37.92 4.35
4858 5792 1.202604 ACTGTGGGGTTGTTACACGAG 60.203 52.381 0.00 0.00 37.92 4.18
4859 5793 0.831966 TGTGGGGTTGTTACACGAGT 59.168 50.000 0.00 0.00 37.92 4.18
4860 5794 2.036217 CTGTGGGGTTGTTACACGAGTA 59.964 50.000 0.00 0.00 37.92 2.59
4862 5796 3.071312 TGTGGGGTTGTTACACGAGTAAT 59.929 43.478 8.69 0.00 41.86 1.89
4863 5797 3.434299 GTGGGGTTGTTACACGAGTAATG 59.566 47.826 8.69 0.00 41.86 1.90
4887 5821 7.679783 TGAATGATGATAATAAGATGTCCGGT 58.320 34.615 0.00 0.00 0.00 5.28
5012 5955 9.515020 CTGTGTAGAATTGTACATTTGTTTTGT 57.485 29.630 17.46 0.00 35.40 2.83
5060 6007 6.588756 TGTATGTAGTTCATGTCTTCGTTTCC 59.411 38.462 0.00 0.00 37.91 3.13
5125 6072 3.253188 TCTGGTGCTGCATTTGTAAGTTC 59.747 43.478 5.27 0.00 0.00 3.01
5165 6114 2.048603 GGCTGCCGGCTGATCTTTT 61.049 57.895 34.52 0.00 41.46 2.27
5215 6164 6.479001 GCAGTTAGATTTCACCTATTAAGCGA 59.521 38.462 0.00 0.00 0.00 4.93
5221 6170 8.281212 AGATTTCACCTATTAAGCGAAAATGT 57.719 30.769 0.00 0.00 30.82 2.71
5230 6179 7.645340 CCTATTAAGCGAAAATGTCAAATGGAG 59.355 37.037 0.00 0.00 0.00 3.86
5234 6183 3.747193 CGAAAATGTCAAATGGAGACCG 58.253 45.455 0.00 0.00 35.15 4.79
5239 6188 1.066858 TGTCAAATGGAGACCGAGCTC 60.067 52.381 2.73 2.73 35.15 4.09
5249 6198 3.160047 CCGAGCTCCATGGAGGCT 61.160 66.667 36.92 32.13 42.19 4.58
5257 6206 3.703052 AGCTCCATGGAGGCTTTTATTTG 59.297 43.478 36.92 13.51 42.19 2.32
5259 6208 4.160252 GCTCCATGGAGGCTTTTATTTGAA 59.840 41.667 36.92 1.17 42.19 2.69
5261 6210 6.678568 TCCATGGAGGCTTTTATTTGAAAA 57.321 33.333 11.44 0.00 37.29 2.29
5349 6298 8.464770 ACATAATGTACATGTGTGCAAATTTC 57.535 30.769 20.33 0.00 43.49 2.17
5352 6301 5.268118 TGTACATGTGTGCAAATTTCCAA 57.732 34.783 9.11 0.00 37.70 3.53
5356 6305 4.141981 ACATGTGTGCAAATTTCCAAGTCA 60.142 37.500 0.00 0.00 0.00 3.41
5427 6591 2.301346 AGCATATGTAGCTGGCCAAAC 58.699 47.619 7.01 6.22 41.61 2.93
5465 6661 4.175337 GCCCGGTAGCATGCAGGA 62.175 66.667 21.98 1.02 38.53 3.86
5468 6664 2.173669 CCGGTAGCATGCAGGAACG 61.174 63.158 21.98 18.12 38.53 3.95
5495 6691 3.391382 GAGCTACACGGGCCAGGT 61.391 66.667 8.08 2.87 0.00 4.00
5496 6692 2.928396 AGCTACACGGGCCAGGTT 60.928 61.111 8.08 0.00 0.00 3.50
5497 6693 2.746277 GCTACACGGGCCAGGTTG 60.746 66.667 8.08 2.84 0.00 3.77
5498 6694 2.046314 CTACACGGGCCAGGTTGG 60.046 66.667 8.08 0.00 41.55 3.77
5578 6774 4.201930 CGGCACAACCCGCTTATTTATTTA 60.202 41.667 0.00 0.00 42.03 1.40
5579 6775 5.506649 CGGCACAACCCGCTTATTTATTTAT 60.507 40.000 0.00 0.00 42.03 1.40
5580 6776 6.277605 GGCACAACCCGCTTATTTATTTATT 58.722 36.000 0.00 0.00 0.00 1.40
5581 6777 6.759356 GGCACAACCCGCTTATTTATTTATTT 59.241 34.615 0.00 0.00 0.00 1.40
5582 6778 7.279090 GGCACAACCCGCTTATTTATTTATTTT 59.721 33.333 0.00 0.00 0.00 1.82
5583 6779 8.661257 GCACAACCCGCTTATTTATTTATTTTT 58.339 29.630 0.00 0.00 0.00 1.94
5648 6844 4.220602 CCCAATATGCCTAAATAACAGCCC 59.779 45.833 0.00 0.00 0.00 5.19
5685 6881 1.595093 GCAGCCCAACCGTGCTAAAT 61.595 55.000 0.00 0.00 35.69 1.40
5686 6882 0.171007 CAGCCCAACCGTGCTAAATG 59.829 55.000 0.00 0.00 35.69 2.32
5712 6908 3.489391 GGCCAGCCCGTTTATTAGT 57.511 52.632 0.00 0.00 0.00 2.24
5719 6915 1.667212 GCCCGTTTATTAGTTGGGTCG 59.333 52.381 0.00 0.00 42.10 4.79
5772 6968 0.459899 CACGACACAGCCTGGCTATA 59.540 55.000 22.90 0.00 36.40 1.31
5773 6969 1.134818 CACGACACAGCCTGGCTATAA 60.135 52.381 22.90 0.00 36.40 0.98
5774 6970 1.137086 ACGACACAGCCTGGCTATAAG 59.863 52.381 22.90 11.69 36.40 1.73
5775 6971 1.137086 CGACACAGCCTGGCTATAAGT 59.863 52.381 22.90 16.57 36.40 2.24
5776 6972 2.418746 CGACACAGCCTGGCTATAAGTT 60.419 50.000 22.90 6.14 36.40 2.66
5777 6973 3.198872 GACACAGCCTGGCTATAAGTTC 58.801 50.000 22.90 11.02 36.40 3.01
5778 6974 2.205074 CACAGCCTGGCTATAAGTTCG 58.795 52.381 22.90 8.91 36.40 3.95
5779 6975 1.139058 ACAGCCTGGCTATAAGTTCGG 59.861 52.381 22.90 8.13 36.40 4.30
5780 6976 0.106894 AGCCTGGCTATAAGTTCGGC 59.893 55.000 21.98 0.00 36.99 5.54
5781 6977 0.885150 GCCTGGCTATAAGTTCGGCC 60.885 60.000 12.43 0.00 44.31 6.13
5784 6980 3.307379 GGCTATAAGTTCGGCCAGG 57.693 57.895 2.24 0.00 43.59 4.45
5785 6981 0.468648 GGCTATAAGTTCGGCCAGGT 59.531 55.000 2.24 0.00 43.59 4.00
5786 6982 1.134189 GGCTATAAGTTCGGCCAGGTT 60.134 52.381 2.24 0.00 43.59 3.50
5787 6983 2.640184 GCTATAAGTTCGGCCAGGTTT 58.360 47.619 2.24 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 97 9.899226 CGAGATACACTATCACTCATAATTTCA 57.101 33.333 0.00 0.00 37.65 2.69
118 123 7.134815 GTCATGATACATTTTGCTACATCACC 58.865 38.462 0.00 0.00 0.00 4.02
232 241 4.083271 GGTGGACTGCAAGCTAACTAAAAG 60.083 45.833 0.00 0.00 37.60 2.27
247 256 0.909610 TTAGGAGCTGGGGTGGACTG 60.910 60.000 0.00 0.00 0.00 3.51
258 267 3.625853 GAGCCAGGAAAAATTAGGAGCT 58.374 45.455 0.00 0.00 0.00 4.09
283 292 3.367703 GGTGCCTTTGGAGACATTCAATG 60.368 47.826 0.00 0.00 42.32 2.82
284 293 2.827921 GGTGCCTTTGGAGACATTCAAT 59.172 45.455 0.00 0.00 42.32 2.57
285 294 2.238521 GGTGCCTTTGGAGACATTCAA 58.761 47.619 0.00 0.00 42.32 2.69
291 300 0.690762 TAGTGGGTGCCTTTGGAGAC 59.309 55.000 0.00 0.00 0.00 3.36
293 302 1.281867 TCATAGTGGGTGCCTTTGGAG 59.718 52.381 0.00 0.00 0.00 3.86
299 308 0.615331 CAGTGTCATAGTGGGTGCCT 59.385 55.000 0.00 0.00 0.00 4.75
334 343 0.172352 CGAGCAAGTGAGGTCTCTCC 59.828 60.000 0.00 0.00 39.23 3.71
336 345 1.173043 CTCGAGCAAGTGAGGTCTCT 58.827 55.000 0.00 0.00 34.00 3.10
353 362 5.123820 TGTTCCGATGTTCATCCAAAATCTC 59.876 40.000 7.14 0.00 0.00 2.75
391 499 3.678056 AGTCTAGACCATGCACGAAAA 57.322 42.857 19.38 0.00 0.00 2.29
395 503 5.183014 TGTATTAGTCTAGACCATGCACG 57.817 43.478 19.38 0.00 0.00 5.34
427 535 2.858745 TGTTTGTCCCTCTTGTAAGCC 58.141 47.619 0.00 0.00 0.00 4.35
495 603 7.291182 TCCTTCTTGAATAACATTGGGGAAAAA 59.709 33.333 0.00 0.00 0.00 1.94
531 639 5.163683 GGCTCACTGCTAATATATGGCATTG 60.164 44.000 4.78 17.41 42.39 2.82
546 654 1.434622 CGGATGATGTGGCTCACTGC 61.435 60.000 6.83 0.00 41.94 4.40
562 670 2.809307 TTTTGTCGAGGCACCCGGA 61.809 57.895 0.73 0.00 0.00 5.14
564 672 2.613506 GGTTTTGTCGAGGCACCCG 61.614 63.158 0.00 0.00 0.00 5.28
567 675 2.223711 ACAATTGGTTTTGTCGAGGCAC 60.224 45.455 10.83 0.00 34.83 5.01
568 676 2.028130 ACAATTGGTTTTGTCGAGGCA 58.972 42.857 10.83 0.00 34.83 4.75
569 677 2.793278 ACAATTGGTTTTGTCGAGGC 57.207 45.000 10.83 0.00 34.83 4.70
586 694 9.771534 CCACTCCCAAATTTATTTTAAGAAACA 57.228 29.630 0.00 0.00 0.00 2.83
624 732 4.853924 TTTGAGGAGCCAGAAACATTTC 57.146 40.909 0.00 0.00 37.45 2.17
641 749 6.588719 ATCAGGACGATTGGAAAATTTTGA 57.411 33.333 8.47 0.00 0.00 2.69
658 766 0.821517 TCGCCGCTTTTCTATCAGGA 59.178 50.000 0.00 0.00 0.00 3.86
661 769 1.640428 CTGTCGCCGCTTTTCTATCA 58.360 50.000 0.00 0.00 0.00 2.15
683 791 0.782384 AGAACGATTTGTCGACACGC 59.218 50.000 19.90 9.51 36.85 5.34
698 806 1.668419 ACCACTGCTGTTGTCAGAAC 58.332 50.000 0.00 0.00 43.76 3.01
700 808 1.667236 CAACCACTGCTGTTGTCAGA 58.333 50.000 0.84 0.00 43.76 3.27
705 813 0.029300 CCGAACAACCACTGCTGTTG 59.971 55.000 7.97 7.97 46.60 3.33
711 819 0.661020 GAACCACCGAACAACCACTG 59.339 55.000 0.00 0.00 0.00 3.66
725 833 7.504924 AAACTACATCGAGATTTTTGAACCA 57.495 32.000 0.00 0.00 0.00 3.67
726 834 9.887406 TTAAAACTACATCGAGATTTTTGAACC 57.113 29.630 0.00 0.00 0.00 3.62
746 854 9.316730 ACATGCCACATCAAATATGATTAAAAC 57.683 29.630 0.00 0.00 43.89 2.43
835 943 2.719798 GCTAGGCGCATGTGTATTTTG 58.280 47.619 10.83 0.00 38.92 2.44
973 1081 0.325577 GCTGGGGTTTGGGATGGATT 60.326 55.000 0.00 0.00 0.00 3.01
975 1083 2.770130 GCTGGGGTTTGGGATGGA 59.230 61.111 0.00 0.00 0.00 3.41
976 1084 2.755469 CGCTGGGGTTTGGGATGG 60.755 66.667 0.00 0.00 0.00 3.51
977 1085 2.046285 GTCGCTGGGGTTTGGGATG 61.046 63.158 0.00 0.00 0.00 3.51
1018 1126 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1019 1127 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1020 1128 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1021 1129 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1022 1130 3.063197 GCGAGGAGGAGGAGGAGGA 62.063 68.421 0.00 0.00 0.00 3.71
1023 1131 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
1101 1215 1.516423 GAGTCCGTACTTGGGGAGC 59.484 63.158 0.00 0.00 35.56 4.70
1122 1236 2.768344 TCCGGGATGAGGCCCTTC 60.768 66.667 0.00 0.00 46.44 3.46
1362 1476 2.637383 GCCGACCTGGAACTCGAGT 61.637 63.158 13.58 13.58 42.00 4.18
1539 1653 1.062587 CGCCTAATTCAAACAGCGGAG 59.937 52.381 0.00 0.00 39.89 4.63
1662 1779 3.756082 AAATTGGCTATCCAGGGTTCA 57.244 42.857 0.00 0.00 44.53 3.18
1736 1867 8.856103 CCTAAAAATTCCAGACCAAAACTAAGA 58.144 33.333 0.00 0.00 0.00 2.10
1807 1942 2.056985 CCCCCACACCACCAAATTG 58.943 57.895 0.00 0.00 0.00 2.32
1972 2115 4.986054 AGATTAGTTGTTGGGTGTGGTA 57.014 40.909 0.00 0.00 0.00 3.25
2070 2216 7.624344 GCACCACATTTTAGTAAGACATGACTC 60.624 40.741 0.00 0.00 0.00 3.36
2119 2265 2.764010 ACCAACAAAGAAAGGTGTTCCC 59.236 45.455 0.00 0.00 35.81 3.97
2431 2591 4.410228 CCAGAGGGAAATCAGATAGTCCAA 59.590 45.833 12.97 0.00 35.59 3.53
2476 2636 3.455327 GACGGAGGGAGTAAAATACAGC 58.545 50.000 0.00 0.00 0.00 4.40
2487 2653 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2489 2655 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2492 2658 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
2493 2659 5.391629 GCTTAAGACACTTATTTTGGGACGG 60.392 44.000 6.67 0.00 0.00 4.79
2494 2660 5.411669 AGCTTAAGACACTTATTTTGGGACG 59.588 40.000 6.67 0.00 0.00 4.79
2496 2662 8.161425 ACTAAGCTTAAGACACTTATTTTGGGA 58.839 33.333 6.67 0.00 0.00 4.37
2497 2663 8.336801 ACTAAGCTTAAGACACTTATTTTGGG 57.663 34.615 6.67 0.00 0.00 4.12
2505 2671 8.827677 CAAAGTTGTACTAAGCTTAAGACACTT 58.172 33.333 16.07 17.10 0.00 3.16
2506 2672 7.985752 ACAAAGTTGTACTAAGCTTAAGACACT 59.014 33.333 16.07 13.78 40.16 3.55
2507 2673 8.139521 ACAAAGTTGTACTAAGCTTAAGACAC 57.860 34.615 16.07 12.36 40.16 3.67
2522 2688 9.293404 AGTGTCTCACTATAGTACAAAGTTGTA 57.707 33.333 4.74 0.00 43.46 2.41
2523 2689 8.179509 AGTGTCTCACTATAGTACAAAGTTGT 57.820 34.615 4.74 1.75 43.46 3.32
2531 2697 9.530633 CCCAAAATAAGTGTCTCACTATAGTAC 57.469 37.037 4.74 1.03 44.62 2.73
2532 2698 9.483489 TCCCAAAATAAGTGTCTCACTATAGTA 57.517 33.333 4.74 0.00 44.62 1.82
2533 2699 8.258708 GTCCCAAAATAAGTGTCTCACTATAGT 58.741 37.037 0.00 0.00 44.62 2.12
2534 2700 7.435488 CGTCCCAAAATAAGTGTCTCACTATAG 59.565 40.741 0.00 0.00 44.62 1.31
2535 2701 7.262772 CGTCCCAAAATAAGTGTCTCACTATA 58.737 38.462 2.80 0.11 44.62 1.31
2536 2702 6.106673 CGTCCCAAAATAAGTGTCTCACTAT 58.893 40.000 2.80 0.00 44.62 2.12
2537 2703 5.475719 CGTCCCAAAATAAGTGTCTCACTA 58.524 41.667 2.80 0.00 44.62 2.74
2539 2705 3.435671 CCGTCCCAAAATAAGTGTCTCAC 59.564 47.826 0.00 0.00 34.10 3.51
2540 2706 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2541 2707 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2542 2708 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2543 2709 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2544 2710 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2545 2711 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2546 2712 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2547 2713 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2548 2714 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2549 2715 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2550 2716 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2551 2717 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2552 2718 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2553 2719 1.835531 GAAATACTCCCTCCGTCCCAA 59.164 52.381 0.00 0.00 0.00 4.12
2554 2720 1.492764 GAAATACTCCCTCCGTCCCA 58.507 55.000 0.00 0.00 0.00 4.37
2555 2721 0.757512 GGAAATACTCCCTCCGTCCC 59.242 60.000 0.00 0.00 38.44 4.46
2564 2730 3.385115 TGGGAGAGAAGGGAAATACTCC 58.615 50.000 0.00 0.00 44.54 3.85
2565 2731 5.368230 AGAATGGGAGAGAAGGGAAATACTC 59.632 44.000 0.00 0.00 0.00 2.59
2566 2732 5.292815 AGAATGGGAGAGAAGGGAAATACT 58.707 41.667 0.00 0.00 0.00 2.12
2567 2733 5.638530 AGAATGGGAGAGAAGGGAAATAC 57.361 43.478 0.00 0.00 0.00 1.89
2568 2734 6.658555 AAAGAATGGGAGAGAAGGGAAATA 57.341 37.500 0.00 0.00 0.00 1.40
2569 2735 5.542848 AAAGAATGGGAGAGAAGGGAAAT 57.457 39.130 0.00 0.00 0.00 2.17
2570 2736 5.075067 AGAAAAGAATGGGAGAGAAGGGAAA 59.925 40.000 0.00 0.00 0.00 3.13
2571 2737 4.603610 AGAAAAGAATGGGAGAGAAGGGAA 59.396 41.667 0.00 0.00 0.00 3.97
2572 2738 4.179133 AGAAAAGAATGGGAGAGAAGGGA 58.821 43.478 0.00 0.00 0.00 4.20
2573 2739 4.582973 AGAAAAGAATGGGAGAGAAGGG 57.417 45.455 0.00 0.00 0.00 3.95
2574 2740 4.633565 CGAAGAAAAGAATGGGAGAGAAGG 59.366 45.833 0.00 0.00 0.00 3.46
2575 2741 5.241662 ACGAAGAAAAGAATGGGAGAGAAG 58.758 41.667 0.00 0.00 0.00 2.85
2576 2742 5.228945 ACGAAGAAAAGAATGGGAGAGAA 57.771 39.130 0.00 0.00 0.00 2.87
2653 2820 0.463204 GGCTGCAGTGCTATCTCAGA 59.537 55.000 17.60 0.00 0.00 3.27
2757 2924 3.308053 CAGCAGTGGATATTGTTGACTCG 59.692 47.826 0.00 0.00 28.33 4.18
2768 2935 3.158185 TGATGGTCACCAGCAGTGGATA 61.158 50.000 11.81 0.00 45.45 2.59
2792 2959 2.205074 CAGACGGTCACTAATGATGCC 58.795 52.381 11.27 0.00 37.14 4.40
2846 3013 4.082300 GGACATACATCACAATTTGCCACA 60.082 41.667 0.00 0.00 0.00 4.17
2847 3014 4.423732 GGACATACATCACAATTTGCCAC 58.576 43.478 0.00 0.00 0.00 5.01
2864 3031 6.461648 CGATATTAGACACAAGACTGGGACAT 60.462 42.308 0.00 0.00 38.20 3.06
2925 3092 2.036089 GGAGGGAGTAGGTCATAAAGCG 59.964 54.545 0.00 0.00 0.00 4.68
2930 3097 1.144503 GGACGGAGGGAGTAGGTCATA 59.855 57.143 0.00 0.00 0.00 2.15
2934 3101 1.856539 TTCGGACGGAGGGAGTAGGT 61.857 60.000 0.00 0.00 0.00 3.08
2937 3104 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
2938 3105 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
2939 3106 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
2940 3107 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
2941 3108 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
2942 3109 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
2943 3110 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
2944 3111 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
2945 3112 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
2946 3113 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
2947 3114 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
2948 3115 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
2949 3116 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
2950 3117 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
2951 3118 5.200368 TCATTTGAGGGACAAGCTTTTTC 57.800 39.130 0.00 0.00 39.77 2.29
2952 3119 5.612725 TTCATTTGAGGGACAAGCTTTTT 57.387 34.783 0.00 0.00 39.77 1.94
2953 3120 5.070847 ACATTCATTTGAGGGACAAGCTTTT 59.929 36.000 0.00 0.00 39.77 2.27
2954 3121 4.590222 ACATTCATTTGAGGGACAAGCTTT 59.410 37.500 0.00 0.00 39.77 3.51
2955 3122 4.154942 ACATTCATTTGAGGGACAAGCTT 58.845 39.130 0.00 0.00 39.77 3.74
2956 3123 3.771216 ACATTCATTTGAGGGACAAGCT 58.229 40.909 0.00 0.00 39.77 3.74
2957 3124 5.591877 AGATACATTCATTTGAGGGACAAGC 59.408 40.000 0.00 0.00 39.77 4.01
2958 3125 7.041508 GCTAGATACATTCATTTGAGGGACAAG 60.042 40.741 0.00 0.00 39.77 3.16
2959 3126 6.767902 GCTAGATACATTCATTTGAGGGACAA 59.232 38.462 0.00 0.00 36.65 3.18
2960 3127 6.126796 TGCTAGATACATTCATTTGAGGGACA 60.127 38.462 0.00 0.00 0.00 4.02
2961 3128 6.203723 GTGCTAGATACATTCATTTGAGGGAC 59.796 42.308 0.00 0.00 0.00 4.46
2962 3129 6.291377 GTGCTAGATACATTCATTTGAGGGA 58.709 40.000 0.00 0.00 0.00 4.20
2963 3130 5.471456 GGTGCTAGATACATTCATTTGAGGG 59.529 44.000 0.00 0.00 0.00 4.30
2964 3131 6.057533 TGGTGCTAGATACATTCATTTGAGG 58.942 40.000 0.00 0.00 0.00 3.86
2965 3132 7.281774 ACTTGGTGCTAGATACATTCATTTGAG 59.718 37.037 0.00 0.00 0.00 3.02
2966 3133 7.112122 ACTTGGTGCTAGATACATTCATTTGA 58.888 34.615 0.00 0.00 0.00 2.69
2967 3134 7.325660 ACTTGGTGCTAGATACATTCATTTG 57.674 36.000 0.00 0.00 0.00 2.32
2968 3135 7.944729 AACTTGGTGCTAGATACATTCATTT 57.055 32.000 0.00 0.00 0.00 2.32
2969 3136 8.267894 ACTAACTTGGTGCTAGATACATTCATT 58.732 33.333 0.00 0.00 0.00 2.57
2970 3137 7.796054 ACTAACTTGGTGCTAGATACATTCAT 58.204 34.615 0.00 0.00 0.00 2.57
2971 3138 7.182817 ACTAACTTGGTGCTAGATACATTCA 57.817 36.000 0.00 0.00 0.00 2.57
2972 3139 8.414778 AGTACTAACTTGGTGCTAGATACATTC 58.585 37.037 0.00 0.00 29.00 2.67
2973 3140 8.307582 AGTACTAACTTGGTGCTAGATACATT 57.692 34.615 0.00 0.00 29.00 2.71
2974 3141 7.899648 AGTACTAACTTGGTGCTAGATACAT 57.100 36.000 0.00 0.00 29.00 2.29
2975 3142 8.270030 TCTAGTACTAACTTGGTGCTAGATACA 58.730 37.037 21.47 7.04 46.22 2.29
2976 3143 8.674263 TCTAGTACTAACTTGGTGCTAGATAC 57.326 38.462 21.47 0.00 46.22 2.24
2980 3147 8.447924 TGTATCTAGTACTAACTTGGTGCTAG 57.552 38.462 18.53 18.53 45.06 3.42
2981 3148 8.991783 ATGTATCTAGTACTAACTTGGTGCTA 57.008 34.615 3.76 3.64 37.15 3.49
2982 3149 7.014422 GGATGTATCTAGTACTAACTTGGTGCT 59.986 40.741 3.76 1.68 37.15 4.40
2983 3150 7.146648 GGATGTATCTAGTACTAACTTGGTGC 58.853 42.308 3.76 0.00 37.15 5.01
2984 3151 8.234136 TGGATGTATCTAGTACTAACTTGGTG 57.766 38.462 3.76 0.00 37.15 4.17
2985 3152 9.435570 AATGGATGTATCTAGTACTAACTTGGT 57.564 33.333 3.76 0.00 37.15 3.67
2993 3160 9.073475 GTCTCTCAAATGGATGTATCTAGTACT 57.927 37.037 0.00 0.00 34.27 2.73
2994 3161 8.851145 TGTCTCTCAAATGGATGTATCTAGTAC 58.149 37.037 0.00 0.00 0.00 2.73
2995 3162 8.996651 TGTCTCTCAAATGGATGTATCTAGTA 57.003 34.615 0.00 0.00 0.00 1.82
2996 3163 7.904558 TGTCTCTCAAATGGATGTATCTAGT 57.095 36.000 0.00 0.00 0.00 2.57
2997 3164 7.384660 GCTTGTCTCTCAAATGGATGTATCTAG 59.615 40.741 0.00 0.00 35.48 2.43
2998 3165 7.070447 AGCTTGTCTCTCAAATGGATGTATCTA 59.930 37.037 0.00 0.00 35.48 1.98
2999 3166 6.054295 GCTTGTCTCTCAAATGGATGTATCT 58.946 40.000 0.00 0.00 35.48 1.98
3000 3167 6.054295 AGCTTGTCTCTCAAATGGATGTATC 58.946 40.000 0.00 0.00 35.48 2.24
3001 3168 5.999044 AGCTTGTCTCTCAAATGGATGTAT 58.001 37.500 0.00 0.00 35.48 2.29
3002 3169 5.426689 AGCTTGTCTCTCAAATGGATGTA 57.573 39.130 0.00 0.00 35.48 2.29
3003 3170 4.298103 AGCTTGTCTCTCAAATGGATGT 57.702 40.909 0.00 0.00 35.48 3.06
3004 3171 4.142447 CCAAGCTTGTCTCTCAAATGGATG 60.142 45.833 24.35 0.00 36.92 3.51
3005 3172 4.015084 CCAAGCTTGTCTCTCAAATGGAT 58.985 43.478 24.35 0.00 36.92 3.41
3006 3173 3.415212 CCAAGCTTGTCTCTCAAATGGA 58.585 45.455 24.35 0.00 36.92 3.41
3007 3174 2.490903 CCCAAGCTTGTCTCTCAAATGG 59.509 50.000 24.35 10.71 35.48 3.16
3008 3175 3.190118 GTCCCAAGCTTGTCTCTCAAATG 59.810 47.826 24.35 5.47 35.48 2.32
3009 3176 3.181440 TGTCCCAAGCTTGTCTCTCAAAT 60.181 43.478 24.35 0.00 35.48 2.32
3010 3177 2.172505 TGTCCCAAGCTTGTCTCTCAAA 59.827 45.455 24.35 0.00 35.48 2.69
3011 3178 1.768275 TGTCCCAAGCTTGTCTCTCAA 59.232 47.619 24.35 1.41 34.61 3.02
3012 3179 1.423584 TGTCCCAAGCTTGTCTCTCA 58.576 50.000 24.35 12.85 0.00 3.27
3013 3180 2.421619 CTTGTCCCAAGCTTGTCTCTC 58.578 52.381 24.35 10.65 0.00 3.20
3014 3181 1.544314 GCTTGTCCCAAGCTTGTCTCT 60.544 52.381 24.35 0.00 40.01 3.10
3015 3182 0.877743 GCTTGTCCCAAGCTTGTCTC 59.122 55.000 24.35 13.85 40.01 3.36
3016 3183 3.027419 GCTTGTCCCAAGCTTGTCT 57.973 52.632 24.35 0.00 40.01 3.41
3022 3189 1.602920 CCGAAAAAGCTTGTCCCAAGC 60.603 52.381 18.69 18.69 43.31 4.01
3023 3190 1.953686 TCCGAAAAAGCTTGTCCCAAG 59.046 47.619 0.00 0.00 0.00 3.61
3024 3191 1.679153 GTCCGAAAAAGCTTGTCCCAA 59.321 47.619 0.00 0.00 0.00 4.12
3025 3192 1.314730 GTCCGAAAAAGCTTGTCCCA 58.685 50.000 0.00 0.00 0.00 4.37
3026 3193 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
3027 3194 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
3028 3195 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
3029 3196 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
3030 3197 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
3031 3198 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
3032 3199 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
3033 3200 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
3034 3201 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
3035 3202 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
3036 3203 1.631405 TTACTCCCTCCGTCCGAAAA 58.369 50.000 0.00 0.00 0.00 2.29
3037 3204 1.856629 ATTACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
3038 3205 1.753073 GAATTACTCCCTCCGTCCGAA 59.247 52.381 0.00 0.00 0.00 4.30
3039 3206 1.064166 AGAATTACTCCCTCCGTCCGA 60.064 52.381 0.00 0.00 0.00 4.55
3040 3207 1.400737 AGAATTACTCCCTCCGTCCG 58.599 55.000 0.00 0.00 0.00 4.79
3041 3208 2.764572 TCAAGAATTACTCCCTCCGTCC 59.235 50.000 0.00 0.00 0.00 4.79
3042 3209 3.447944 ACTCAAGAATTACTCCCTCCGTC 59.552 47.826 0.00 0.00 0.00 4.79
3043 3210 3.442076 ACTCAAGAATTACTCCCTCCGT 58.558 45.455 0.00 0.00 0.00 4.69
3044 3211 5.793030 ATACTCAAGAATTACTCCCTCCG 57.207 43.478 0.00 0.00 0.00 4.63
3045 3212 6.987404 GTCAATACTCAAGAATTACTCCCTCC 59.013 42.308 0.00 0.00 0.00 4.30
3046 3213 7.492994 GTGTCAATACTCAAGAATTACTCCCTC 59.507 40.741 0.00 0.00 0.00 4.30
3047 3214 7.181125 AGTGTCAATACTCAAGAATTACTCCCT 59.819 37.037 0.00 0.00 0.00 4.20
3048 3215 7.331791 AGTGTCAATACTCAAGAATTACTCCC 58.668 38.462 0.00 0.00 0.00 4.30
3051 3218 9.319143 GCATAGTGTCAATACTCAAGAATTACT 57.681 33.333 0.00 0.00 32.19 2.24
3052 3219 9.098355 TGCATAGTGTCAATACTCAAGAATTAC 57.902 33.333 0.00 0.00 32.19 1.89
3129 3301 4.230657 CGGAAGTGTTGTTTGTTCAAACA 58.769 39.130 21.96 21.96 40.54 2.83
3153 3325 2.504367 CAAGGGAAGTTGGTGTAGTGG 58.496 52.381 0.00 0.00 0.00 4.00
3167 3339 1.358152 CCACTTGTAGGTCCAAGGGA 58.642 55.000 4.80 0.00 46.62 4.20
3187 3359 0.885196 GTTGCAAAAGATGGGGCGTA 59.115 50.000 0.00 0.00 0.00 4.42
3264 3443 0.588252 GTTGCACACGCTCTTCATGT 59.412 50.000 0.00 0.00 39.64 3.21
3275 3454 4.952262 AGTCATGATACATGTTGCACAC 57.048 40.909 2.30 3.88 0.00 3.82
3287 3466 7.348080 ACTTCTCCGTTATGAAGTCATGATA 57.652 36.000 0.00 0.00 46.70 2.15
3303 3482 2.048222 TGCCAAGCGACTTCTCCG 60.048 61.111 0.00 0.00 0.00 4.63
3311 3490 0.749091 CCCAATCATCTGCCAAGCGA 60.749 55.000 0.00 0.00 0.00 4.93
3312 3491 0.749091 TCCCAATCATCTGCCAAGCG 60.749 55.000 0.00 0.00 0.00 4.68
3338 3517 2.885113 CATCTCGACGTGCCTCCA 59.115 61.111 0.00 0.00 0.00 3.86
3361 3540 0.546122 ACAAAGCCTCACTGACCACA 59.454 50.000 0.00 0.00 0.00 4.17
3408 3634 2.337879 TTTTGCGAGTGGGACTGCCT 62.338 55.000 0.00 0.00 0.00 4.75
3421 3647 2.848002 GCGATACGGGTACATTTTTGCG 60.848 50.000 0.00 0.00 0.00 4.85
3437 3664 5.976458 TCACAGGCATATGATATTGCGATA 58.024 37.500 6.97 0.00 39.78 2.92
3462 3689 4.827087 AGCGCGCAGGATCACAGG 62.827 66.667 35.10 0.00 0.00 4.00
3477 3704 1.538950 CTTCTTTCACCCTTGAGCAGC 59.461 52.381 0.00 0.00 31.71 5.25
3566 4054 9.730420 ATGTAATTCAGTTTAACAAGTTCACAC 57.270 29.630 0.00 0.00 0.00 3.82
3796 4462 1.398692 TTTTGCTTCTCTGGCGGTTT 58.601 45.000 0.00 0.00 0.00 3.27
3814 4480 6.656693 CCCAAGAGAAGGATATATTCGCAATT 59.343 38.462 6.64 0.00 0.00 2.32
3819 4485 5.814705 GCATCCCAAGAGAAGGATATATTCG 59.185 44.000 0.00 0.00 41.05 3.34
3827 4493 2.848694 AGAATGCATCCCAAGAGAAGGA 59.151 45.455 0.00 0.00 36.36 3.36
3829 4495 4.634184 CAAGAATGCATCCCAAGAGAAG 57.366 45.455 0.00 0.00 0.00 2.85
3850 4516 8.848474 AGTGTATATCCATATTTGTACTTGGC 57.152 34.615 0.00 0.00 0.00 4.52
3884 4555 3.874392 AGTAGCCAACATGCCATTTTC 57.126 42.857 0.00 0.00 0.00 2.29
3908 4579 7.942894 AGAAGTAGTTAACTAGTTTTTGGGCAT 59.057 33.333 28.21 10.18 40.96 4.40
4015 4738 7.446931 TCTGGTAAAAATGTCTAGTCATTTGCA 59.553 33.333 22.90 13.80 44.10 4.08
4016 4739 7.816640 TCTGGTAAAAATGTCTAGTCATTTGC 58.183 34.615 22.90 16.82 44.10 3.68
4082 4863 9.251440 AGTTGGTTCCTTCTAGTAAAACTTTTT 57.749 29.630 0.00 0.00 0.00 1.94
4185 4973 3.933861 AGTTATTGAGATGTGGGTCCC 57.066 47.619 0.00 0.00 0.00 4.46
4197 4985 8.463930 ACATGGAAGTTTTCTCAAGTTATTGA 57.536 30.769 0.00 0.00 43.20 2.57
4249 5037 7.840342 TCAAGATCAGACATTTTAAGAGAGC 57.160 36.000 0.00 0.00 0.00 4.09
4290 5078 4.400251 AGGATACAATTGAACCATGCAGTG 59.600 41.667 13.59 0.00 41.41 3.66
4333 5121 6.597672 TGTACCTAACTGCCATTTGACAATAG 59.402 38.462 0.00 0.00 0.00 1.73
4370 5158 9.409918 AGTACTAATAGACTAGCATTTCTGACA 57.590 33.333 0.00 0.00 0.00 3.58
4416 5204 3.446873 ACAAATGAGCACTTGTTTCACCA 59.553 39.130 0.00 0.00 31.76 4.17
4455 5243 1.974236 ACAGAAGAGGGTCCACAGAAG 59.026 52.381 0.00 0.00 0.00 2.85
4456 5244 2.103153 ACAGAAGAGGGTCCACAGAA 57.897 50.000 0.00 0.00 0.00 3.02
4457 5245 2.103153 AACAGAAGAGGGTCCACAGA 57.897 50.000 0.00 0.00 0.00 3.41
4458 5246 2.938956 AAACAGAAGAGGGTCCACAG 57.061 50.000 0.00 0.00 0.00 3.66
4459 5247 3.056107 CGATAAACAGAAGAGGGTCCACA 60.056 47.826 0.00 0.00 0.00 4.17
4460 5248 3.194968 TCGATAAACAGAAGAGGGTCCAC 59.805 47.826 0.00 0.00 0.00 4.02
4461 5249 3.437213 TCGATAAACAGAAGAGGGTCCA 58.563 45.455 0.00 0.00 0.00 4.02
4462 5250 3.447944 ACTCGATAAACAGAAGAGGGTCC 59.552 47.826 0.00 0.00 33.58 4.46
4463 5251 4.425520 CACTCGATAAACAGAAGAGGGTC 58.574 47.826 0.00 0.00 33.58 4.46
4464 5252 3.368531 GCACTCGATAAACAGAAGAGGGT 60.369 47.826 0.00 0.00 35.01 4.34
4465 5253 3.190874 GCACTCGATAAACAGAAGAGGG 58.809 50.000 0.00 0.00 35.60 4.30
4466 5254 3.190874 GGCACTCGATAAACAGAAGAGG 58.809 50.000 0.00 0.00 33.58 3.69
4467 5255 3.849911 TGGCACTCGATAAACAGAAGAG 58.150 45.455 0.00 0.00 35.28 2.85
4468 5256 3.953712 TGGCACTCGATAAACAGAAGA 57.046 42.857 0.00 0.00 0.00 2.87
4525 5325 7.706179 CCAACGACCTATTGCAATCAAAATATT 59.294 33.333 16.86 1.21 35.56 1.28
4527 5327 6.151985 ACCAACGACCTATTGCAATCAAAATA 59.848 34.615 16.86 0.00 35.56 1.40
4530 5330 3.823873 ACCAACGACCTATTGCAATCAAA 59.176 39.130 16.86 0.00 35.56 2.69
4540 5340 7.236529 TCCTACATATTCTACCAACGACCTAT 58.763 38.462 0.00 0.00 0.00 2.57
4544 5344 8.332996 TCTATCCTACATATTCTACCAACGAC 57.667 38.462 0.00 0.00 0.00 4.34
4546 5346 9.011095 TCTTCTATCCTACATATTCTACCAACG 57.989 37.037 0.00 0.00 0.00 4.10
4567 5480 7.500227 TGATCTTGAAACATTGAACACTCTTCT 59.500 33.333 0.00 0.00 0.00 2.85
4576 5489 6.003326 TGGCTACTGATCTTGAAACATTGAA 58.997 36.000 0.00 0.00 0.00 2.69
4584 5497 4.507710 GTGTCATGGCTACTGATCTTGAA 58.492 43.478 0.00 0.00 0.00 2.69
4586 5499 3.118482 AGGTGTCATGGCTACTGATCTTG 60.118 47.826 0.00 0.00 0.00 3.02
4587 5500 3.110705 AGGTGTCATGGCTACTGATCTT 58.889 45.455 0.00 0.00 0.00 2.40
4589 5502 3.550437 AAGGTGTCATGGCTACTGATC 57.450 47.619 0.00 0.00 0.00 2.92
4590 5503 5.636903 ATAAAGGTGTCATGGCTACTGAT 57.363 39.130 0.00 0.00 0.00 2.90
4593 5506 5.815581 TGAAATAAAGGTGTCATGGCTACT 58.184 37.500 0.00 0.00 0.00 2.57
4594 5507 5.449177 GCTGAAATAAAGGTGTCATGGCTAC 60.449 44.000 0.00 0.00 0.00 3.58
4596 5509 3.445096 GCTGAAATAAAGGTGTCATGGCT 59.555 43.478 0.00 0.00 0.00 4.75
4598 5511 3.763360 TGGCTGAAATAAAGGTGTCATGG 59.237 43.478 0.00 0.00 0.00 3.66
4599 5512 4.460382 ACTGGCTGAAATAAAGGTGTCATG 59.540 41.667 0.00 0.00 0.00 3.07
4601 5514 4.098914 ACTGGCTGAAATAAAGGTGTCA 57.901 40.909 0.00 0.00 0.00 3.58
4603 5516 4.892934 TGAAACTGGCTGAAATAAAGGTGT 59.107 37.500 0.00 0.00 0.00 4.16
4608 5521 5.298276 AGACGTTGAAACTGGCTGAAATAAA 59.702 36.000 0.00 0.00 0.00 1.40
4609 5522 4.819630 AGACGTTGAAACTGGCTGAAATAA 59.180 37.500 0.00 0.00 0.00 1.40
4611 5524 3.003689 CAGACGTTGAAACTGGCTGAAAT 59.996 43.478 12.57 0.00 39.35 2.17
4612 5525 2.354510 CAGACGTTGAAACTGGCTGAAA 59.645 45.455 12.57 0.00 39.35 2.69
4613 5526 1.939934 CAGACGTTGAAACTGGCTGAA 59.060 47.619 12.57 0.00 39.35 3.02
4614 5527 1.134521 ACAGACGTTGAAACTGGCTGA 60.135 47.619 20.25 0.00 39.35 4.26
4615 5528 1.261619 GACAGACGTTGAAACTGGCTG 59.738 52.381 14.95 14.95 41.26 4.85
4616 5529 1.134521 TGACAGACGTTGAAACTGGCT 60.135 47.619 8.36 0.00 40.00 4.75
4617 5530 1.295792 TGACAGACGTTGAAACTGGC 58.704 50.000 6.21 3.39 39.78 4.85
4618 5531 2.675844 TGTTGACAGACGTTGAAACTGG 59.324 45.455 6.21 0.00 36.17 4.00
4620 5533 9.817809 ATATATATGTTGACAGACGTTGAAACT 57.182 29.630 0.00 0.00 32.10 2.66
4623 5536 9.981114 ATGATATATATGTTGACAGACGTTGAA 57.019 29.630 0.00 0.00 0.00 2.69
4624 5537 9.981114 AATGATATATATGTTGACAGACGTTGA 57.019 29.630 0.00 0.00 0.00 3.18
4648 5570 6.152661 CCAGGTGAACATTGGTGTACATAAAT 59.847 38.462 0.00 0.00 37.67 1.40
4652 5574 3.181434 ACCAGGTGAACATTGGTGTACAT 60.181 43.478 0.00 0.00 43.32 2.29
4707 5631 4.019792 TGGCATATGCGGTAGAAATCAT 57.980 40.909 21.04 0.00 43.26 2.45
4713 5637 4.085357 AGAATTTGGCATATGCGGTAGA 57.915 40.909 21.04 6.30 43.26 2.59
4714 5638 5.940192 TTAGAATTTGGCATATGCGGTAG 57.060 39.130 21.04 0.00 43.26 3.18
4719 5644 7.413438 CCGAGTAGATTAGAATTTGGCATATGC 60.413 40.741 19.79 19.79 41.14 3.14
4731 5656 8.554528 CGTCAAATACTACCGAGTAGATTAGAA 58.445 37.037 15.28 0.00 41.50 2.10
4736 5661 5.128919 ACCGTCAAATACTACCGAGTAGAT 58.871 41.667 15.28 4.89 41.50 1.98
4739 5664 3.627577 GGACCGTCAAATACTACCGAGTA 59.372 47.826 0.00 0.00 42.41 2.59
4740 5665 2.424956 GGACCGTCAAATACTACCGAGT 59.575 50.000 0.00 0.00 39.92 4.18
4741 5666 2.686915 AGGACCGTCAAATACTACCGAG 59.313 50.000 0.00 0.00 0.00 4.63
4742 5667 2.726821 AGGACCGTCAAATACTACCGA 58.273 47.619 0.00 0.00 0.00 4.69
4743 5668 3.515330 AAGGACCGTCAAATACTACCG 57.485 47.619 0.00 0.00 0.00 4.02
4744 5669 5.082251 AGAAAGGACCGTCAAATACTACC 57.918 43.478 0.00 0.00 0.00 3.18
4745 5670 5.930569 ACAAGAAAGGACCGTCAAATACTAC 59.069 40.000 0.00 0.00 0.00 2.73
4746 5671 6.105397 ACAAGAAAGGACCGTCAAATACTA 57.895 37.500 0.00 0.00 0.00 1.82
4747 5672 4.969484 ACAAGAAAGGACCGTCAAATACT 58.031 39.130 0.00 0.00 0.00 2.12
4761 5690 4.051237 GCCTGCAAAGGTAAACAAGAAAG 58.949 43.478 0.00 0.00 0.00 2.62
4765 5694 3.068024 TCAAGCCTGCAAAGGTAAACAAG 59.932 43.478 0.00 0.00 0.00 3.16
4767 5696 2.622942 CTCAAGCCTGCAAAGGTAAACA 59.377 45.455 0.00 0.00 0.00 2.83
4768 5697 2.608016 GCTCAAGCCTGCAAAGGTAAAC 60.608 50.000 0.00 0.00 34.31 2.01
4797 5727 2.663852 AAGTGGAACGAACGCCCG 60.664 61.111 0.00 0.00 45.86 6.13
4839 5773 1.202604 ACTCGTGTAACAACCCCACAG 60.203 52.381 0.00 0.00 35.74 3.66
4860 5794 9.170734 CCGGACATCTTATTATCATCATTCATT 57.829 33.333 0.00 0.00 0.00 2.57
4862 5796 7.603784 CACCGGACATCTTATTATCATCATTCA 59.396 37.037 9.46 0.00 0.00 2.57
4863 5797 7.413438 GCACCGGACATCTTATTATCATCATTC 60.413 40.741 9.46 0.00 0.00 2.67
4917 5852 2.037687 CACACCACCATGGCCCAT 59.962 61.111 13.04 0.00 42.67 4.00
4921 5856 2.202395 AACAGCACACCACCATGGC 61.202 57.895 13.04 0.00 42.67 4.40
4950 5893 0.037790 GGAGAGACAGCAGACCACAC 60.038 60.000 0.00 0.00 0.00 3.82
5004 5947 2.354203 GGTCCCAGTTGCAACAAAACAA 60.354 45.455 30.11 8.61 0.00 2.83
5012 5955 0.840617 TACACAGGTCCCAGTTGCAA 59.159 50.000 0.00 0.00 0.00 4.08
5086 6033 4.469945 CACCAGACTTTCCATAGGAGGTAA 59.530 45.833 0.00 0.00 31.21 2.85
5125 6072 1.971167 TAGCACGCCCCAAAGCTTG 60.971 57.895 0.00 0.00 38.47 4.01
5179 6128 1.080093 CTAACTGCTTGCGGTCCGA 60.080 57.895 17.49 0.00 0.00 4.55
5188 6137 7.011482 CGCTTAATAGGTGAAATCTAACTGCTT 59.989 37.037 0.00 0.00 0.00 3.91
5215 6164 3.191371 GCTCGGTCTCCATTTGACATTTT 59.809 43.478 0.00 0.00 36.26 1.82
5230 6179 2.818132 CCTCCATGGAGCTCGGTC 59.182 66.667 32.97 0.00 40.69 4.79
5234 6183 2.717639 TAAAAGCCTCCATGGAGCTC 57.282 50.000 32.97 25.25 40.69 4.09
5239 6188 6.466812 AGTTTTCAAATAAAAGCCTCCATGG 58.533 36.000 4.97 4.97 39.35 3.66
5318 6267 8.816640 TGCACACATGTACATTATGTATCTAG 57.183 34.615 17.98 9.67 36.67 2.43
5325 6274 7.544915 TGGAAATTTGCACACATGTACATTATG 59.455 33.333 8.47 10.25 0.00 1.90
5427 6591 3.209097 CCCATTTAGCACGGCCCG 61.209 66.667 0.00 0.00 0.00 6.13
5432 6596 2.774799 GGCCAGCCCATTTAGCACG 61.775 63.158 0.00 0.00 0.00 5.34
5468 6664 3.755628 TGTAGCTCGGGTCGTGCC 61.756 66.667 10.10 0.00 45.54 5.01
5479 6675 2.928396 AACCTGGCCCGTGTAGCT 60.928 61.111 0.00 0.00 0.00 3.32
5555 6751 1.088306 TAAATAAGCGGGTTGTGCCG 58.912 50.000 2.08 0.00 38.44 5.69
5606 6802 9.985730 ATATTGGGCTGTATTTTTGAACATATG 57.014 29.630 0.00 0.00 0.00 1.78
5609 6805 6.762661 GCATATTGGGCTGTATTTTTGAACAT 59.237 34.615 0.00 0.00 0.00 2.71
5648 6844 3.777478 CTGCATATTTTCAGCCTGTTGG 58.223 45.455 0.00 0.00 0.00 3.77
5698 6894 2.678769 CGACCCAACTAATAAACGGGCT 60.679 50.000 0.00 0.00 40.87 5.19
5712 6908 2.606519 AGCCTAGGCACGACCCAA 60.607 61.111 34.70 0.00 44.88 4.12
5719 6915 1.990060 TGTCCTCCAGCCTAGGCAC 60.990 63.158 34.70 22.54 44.88 5.01
5751 6947 2.434658 TAGCCAGGCTGTGTCGTGTG 62.435 60.000 25.59 0.00 40.10 3.82
5752 6948 1.544825 ATAGCCAGGCTGTGTCGTGT 61.545 55.000 25.59 0.00 40.10 4.49
5757 6953 2.418746 CGAACTTATAGCCAGGCTGTGT 60.419 50.000 25.59 9.83 40.10 3.72
5760 6956 1.871080 CCGAACTTATAGCCAGGCTG 58.129 55.000 25.59 9.75 40.10 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.