Multiple sequence alignment - TraesCS4A01G280400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G280400 chr4A 100.000 3036 0 0 1 3036 588930457 588933492 0.000000e+00 5607
1 TraesCS4A01G280400 chr4A 91.860 86 7 0 347 432 682798973 682798888 1.480000e-23 121
2 TraesCS4A01G280400 chr7A 81.344 1994 268 44 429 2359 142129724 142131676 0.000000e+00 1526
3 TraesCS4A01G280400 chr7A 80.779 2003 266 49 429 2359 140983154 140985109 0.000000e+00 1456
4 TraesCS4A01G280400 chr7A 81.171 1349 199 33 1042 2359 141260973 141262297 0.000000e+00 1033
5 TraesCS4A01G280400 chr7A 81.023 1349 201 32 1042 2359 141566646 141567970 0.000000e+00 1022
6 TraesCS4A01G280400 chr7A 80.935 1348 202 31 1042 2359 141847468 141848790 0.000000e+00 1014
7 TraesCS4A01G280400 chr7A 83.472 720 74 19 2352 3036 141567919 141568628 1.990000e-176 628
8 TraesCS4A01G280400 chr7A 83.333 720 75 19 2352 3036 140985058 140985767 9.240000e-175 623
9 TraesCS4A01G280400 chr7A 83.310 719 76 19 2352 3036 141262246 141262954 9.240000e-175 623
10 TraesCS4A01G280400 chr7A 83.356 721 73 21 2352 3036 142131625 142132334 9.240000e-175 623
11 TraesCS4A01G280400 chr7A 82.802 721 78 20 2352 3036 141848739 141849449 1.200000e-168 603
12 TraesCS4A01G280400 chr7A 84.185 626 65 7 429 1039 141565995 141566601 7.300000e-161 577
13 TraesCS4A01G280400 chr7A 83.696 644 72 6 429 1057 141846795 141847420 7.300000e-161 577
14 TraesCS4A01G280400 chr7A 83.178 642 76 11 429 1057 141260324 141260946 2.640000e-155 558
15 TraesCS4A01G280400 chr7A 92.997 357 22 3 2 356 141259864 141260219 4.490000e-143 518
16 TraesCS4A01G280400 chr7A 92.717 357 23 3 2 356 141846335 141846690 2.090000e-141 512
17 TraesCS4A01G280400 chr7A 91.870 369 27 3 2 368 142129264 142129631 2.090000e-141 512
18 TraesCS4A01G280400 chr7A 91.351 370 28 4 2 368 141565534 141565902 1.260000e-138 503
19 TraesCS4A01G280400 chr7A 92.157 357 24 4 2 356 140982695 140983049 4.520000e-138 501
20 TraesCS4A01G280400 chr2A 92.045 88 7 0 348 435 745552763 745552850 1.140000e-24 124
21 TraesCS4A01G280400 chr4D 89.000 100 8 3 339 436 456274782 456274880 1.480000e-23 121
22 TraesCS4A01G280400 chr7B 89.474 95 9 1 347 441 639796284 639796191 5.320000e-23 119
23 TraesCS4A01G280400 chr5A 89.362 94 10 0 347 440 218994217 218994310 5.320000e-23 119
24 TraesCS4A01G280400 chr3A 86.408 103 14 0 313 415 726304044 726303942 2.470000e-21 113
25 TraesCS4A01G280400 chr4B 85.455 110 13 3 335 443 90721478 90721585 8.900000e-21 111
26 TraesCS4A01G280400 chrUn 85.714 105 14 1 328 432 37029014 37028911 3.200000e-20 110
27 TraesCS4A01G280400 chr5B 87.500 96 11 1 328 423 655891140 655891234 3.200000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G280400 chr4A 588930457 588933492 3035 False 5607.0 5607 100.000000 1 3036 1 chr4A.!!$F1 3035
1 TraesCS4A01G280400 chr7A 142129264 142132334 3070 False 887.0 1526 85.523333 2 3036 3 chr7A.!!$F5 3034
2 TraesCS4A01G280400 chr7A 140982695 140985767 3072 False 860.0 1456 85.423000 2 3036 3 chr7A.!!$F1 3034
3 TraesCS4A01G280400 chr7A 141259864 141262954 3090 False 683.0 1033 85.164000 2 3036 4 chr7A.!!$F2 3034
4 TraesCS4A01G280400 chr7A 141565534 141568628 3094 False 682.5 1022 85.007750 2 3036 4 chr7A.!!$F3 3034
5 TraesCS4A01G280400 chr7A 141846335 141849449 3114 False 676.5 1014 85.037500 2 3036 4 chr7A.!!$F4 3034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 690 0.950836 TGTCCACAAATCTTGGCACG 59.049 50.0 0.00 0.00 33.71 5.34 F
1188 1305 0.179156 GACATTGCTGGCGTGGAATG 60.179 55.0 17.84 17.84 46.50 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1847 1979 0.329261 CCCTGGAATGACAGAAGCCA 59.671 55.0 0.00 0.00 40.97 4.75 R
2963 3137 0.259647 TGCTATGCAGGCCTGGATTT 59.740 50.0 40.06 23.81 41.85 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.177401 CTCATCCGACTCAGTCCACA 58.823 55.000 0.00 0.00 0.00 4.17
33 34 1.660355 GACTCAGTCCACAGCGTCA 59.340 57.895 0.00 0.00 0.00 4.35
216 219 2.681848 GAGTTGCTGACAGAATGGATGG 59.318 50.000 6.65 0.00 43.62 3.51
221 224 2.163010 GCTGACAGAATGGATGGTTGTG 59.837 50.000 6.65 0.00 43.62 3.33
224 227 1.888512 ACAGAATGGATGGTTGTGTGC 59.111 47.619 0.00 0.00 43.62 4.57
238 241 1.864711 TGTGTGCGTGCTTTACTTCTC 59.135 47.619 0.00 0.00 0.00 2.87
244 247 3.432252 TGCGTGCTTTACTTCTCTTAAGC 59.568 43.478 0.00 0.00 42.46 3.09
310 313 5.674052 ATGCATAGTTCTAGAGCTATGGG 57.326 43.478 37.10 24.08 46.27 4.00
324 327 7.775053 AGAGCTATGGGTTCACAAATTAAAA 57.225 32.000 0.00 0.00 0.00 1.52
427 463 7.546778 TGCTCTTATATTTTGTTACGCATGA 57.453 32.000 0.00 0.00 0.00 3.07
446 482 8.736244 ACGCATGAAGTATTTATGTAAAAACCT 58.264 29.630 0.00 0.00 43.27 3.50
462 498 2.710096 ACCTAGCGTGCATTTGGTAT 57.290 45.000 0.00 0.00 0.00 2.73
465 501 3.206150 CCTAGCGTGCATTTGGTATTCT 58.794 45.455 0.00 0.00 0.00 2.40
469 505 4.881920 AGCGTGCATTTGGTATTCTTTTT 58.118 34.783 0.00 0.00 0.00 1.94
480 516 9.783081 ATTTGGTATTCTTTTTGCTCAGAAAAT 57.217 25.926 0.00 0.00 32.76 1.82
484 520 8.703336 GGTATTCTTTTTGCTCAGAAAATGTTC 58.297 33.333 0.00 0.00 32.76 3.18
486 522 8.953368 ATTCTTTTTGCTCAGAAAATGTTCTT 57.047 26.923 0.00 0.00 41.55 2.52
527 563 4.002906 TGTGCCTAAGTACTGAAGTTGG 57.997 45.455 0.00 0.00 0.00 3.77
532 568 5.529800 TGCCTAAGTACTGAAGTTGGTTTTC 59.470 40.000 0.00 0.00 0.00 2.29
534 570 6.293462 GCCTAAGTACTGAAGTTGGTTTTCTG 60.293 42.308 0.00 0.00 0.00 3.02
558 594 9.102757 CTGTATGATTATGCAAGTTTCTGTACT 57.897 33.333 0.00 0.00 0.00 2.73
559 595 9.448438 TGTATGATTATGCAAGTTTCTGTACTT 57.552 29.630 0.00 0.00 38.87 2.24
560 596 9.922305 GTATGATTATGCAAGTTTCTGTACTTC 57.078 33.333 0.00 0.00 36.24 3.01
563 599 9.665719 TGATTATGCAAGTTTCTGTACTTCATA 57.334 29.630 0.00 0.00 36.24 2.15
573 609 9.155975 AGTTTCTGTACTTCATATTGACATGAC 57.844 33.333 0.00 0.00 34.69 3.06
574 610 8.935844 GTTTCTGTACTTCATATTGACATGACA 58.064 33.333 0.00 0.00 34.69 3.58
577 613 8.935844 TCTGTACTTCATATTGACATGACAAAC 58.064 33.333 14.36 6.45 34.69 2.93
645 682 9.877137 GGTTCATTTTATTTTTGTCCACAAATC 57.123 29.630 5.72 0.00 44.30 2.17
649 686 9.881529 CATTTTATTTTTGTCCACAAATCTTGG 57.118 29.630 5.72 0.00 44.30 3.61
650 687 7.489574 TTTATTTTTGTCCACAAATCTTGGC 57.510 32.000 5.72 0.00 44.30 4.52
651 688 4.478206 TTTTTGTCCACAAATCTTGGCA 57.522 36.364 5.72 0.00 44.30 4.92
652 689 3.451141 TTTGTCCACAAATCTTGGCAC 57.549 42.857 0.55 0.00 40.55 5.01
653 690 0.950836 TGTCCACAAATCTTGGCACG 59.049 50.000 0.00 0.00 33.71 5.34
654 691 0.951558 GTCCACAAATCTTGGCACGT 59.048 50.000 0.00 0.00 33.71 4.49
655 692 2.147958 GTCCACAAATCTTGGCACGTA 58.852 47.619 0.00 0.00 33.71 3.57
656 693 2.159627 GTCCACAAATCTTGGCACGTAG 59.840 50.000 0.00 0.00 33.71 3.51
657 694 2.151202 CCACAAATCTTGGCACGTAGT 58.849 47.619 0.00 0.00 36.30 2.73
668 705 6.820335 TCTTGGCACGTAGTAGTACTAGATA 58.180 40.000 10.38 0.00 41.61 1.98
717 754 4.137543 CAACCCTATCCTGGTAATTGCTC 58.862 47.826 0.00 0.00 34.15 4.26
719 756 3.392616 ACCCTATCCTGGTAATTGCTCTG 59.607 47.826 0.00 0.00 33.26 3.35
736 773 1.946768 TCTGAAGCTGTGTTTTTCCCG 59.053 47.619 0.00 0.00 0.00 5.14
739 776 3.745799 TGAAGCTGTGTTTTTCCCGATA 58.254 40.909 0.00 0.00 0.00 2.92
765 802 4.300803 TGTGAAATGTTGAATTGCTGCTC 58.699 39.130 0.00 0.00 0.00 4.26
784 821 8.210946 TGCTGCTCTAATATGTGGTATACTTTT 58.789 33.333 2.25 0.00 0.00 2.27
789 826 8.378172 TCTAATATGTGGTATACTTTTGCTGC 57.622 34.615 2.25 0.00 0.00 5.25
834 871 6.721321 TGTTCAAATTCCGTCTTTTGAGTAC 58.279 36.000 0.00 0.00 41.42 2.73
846 883 7.957484 CCGTCTTTTGAGTACATTTTGATACTG 59.043 37.037 0.00 0.00 31.69 2.74
847 884 8.708742 CGTCTTTTGAGTACATTTTGATACTGA 58.291 33.333 0.00 0.00 31.69 3.41
885 922 9.848172 GTGTGTTGATTGTTTGATTTCAAATAC 57.152 29.630 8.82 0.00 46.12 1.89
889 926 8.751335 GTTGATTGTTTGATTTCAAATACGTGT 58.249 29.630 8.82 0.00 46.12 4.49
896 933 5.448438 TGATTTCAAATACGTGTTGACTGC 58.552 37.500 14.06 8.26 34.78 4.40
897 934 5.238432 TGATTTCAAATACGTGTTGACTGCT 59.762 36.000 14.06 2.61 34.78 4.24
898 935 4.466567 TTCAAATACGTGTTGACTGCTG 57.533 40.909 14.06 1.67 34.78 4.41
948 1002 8.642908 AATAAGTGTTGGCTTACTTGTTTTTC 57.357 30.769 10.41 0.00 35.57 2.29
959 1013 6.303259 GCTTACTTGTTTTTCTGCTTATGTCG 59.697 38.462 0.00 0.00 0.00 4.35
1010 1064 5.653769 TCTGCTTTTAAGGAATGGATCAAGG 59.346 40.000 0.00 0.00 0.00 3.61
1015 1069 2.925966 AGGAATGGATCAAGGCCAAA 57.074 45.000 5.01 0.00 39.21 3.28
1032 1086 2.554032 CCAAACCTTCGACTTCTTGCAT 59.446 45.455 0.00 0.00 0.00 3.96
1039 1093 3.333029 TCGACTTCTTGCATTGGATCA 57.667 42.857 0.00 0.00 0.00 2.92
1040 1094 3.002791 TCGACTTCTTGCATTGGATCAC 58.997 45.455 0.00 0.00 0.00 3.06
1043 1097 2.086869 CTTCTTGCATTGGATCACCGT 58.913 47.619 0.00 0.00 39.42 4.83
1046 1100 1.024046 TTGCATTGGATCACCGTCCG 61.024 55.000 0.00 0.00 41.35 4.79
1049 1103 2.665089 ATTGGATCACCGTCCGCCA 61.665 57.895 0.00 0.00 41.35 5.69
1062 1179 2.046285 CCGCCAGACCCAATTGACC 61.046 63.158 7.12 0.00 0.00 4.02
1067 1184 2.682563 GCCAGACCCAATTGACCGAATA 60.683 50.000 7.12 0.00 0.00 1.75
1070 1187 4.036734 CCAGACCCAATTGACCGAATATTG 59.963 45.833 7.12 0.00 0.00 1.90
1072 1189 5.820423 CAGACCCAATTGACCGAATATTGTA 59.180 40.000 7.12 0.00 0.00 2.41
1073 1190 5.820947 AGACCCAATTGACCGAATATTGTAC 59.179 40.000 7.12 0.00 0.00 2.90
1096 1213 3.257375 TCTTTACTTTGGAGACGCTGCTA 59.743 43.478 0.00 0.00 0.00 3.49
1104 1221 2.893489 TGGAGACGCTGCTATCATATGT 59.107 45.455 1.90 0.00 0.00 2.29
1111 1228 2.848887 GCTGCTATCATATGTAGCGACG 59.151 50.000 21.69 16.48 45.82 5.12
1137 1254 2.493675 TCGCAACTATCTGAAGAGTGCT 59.506 45.455 0.00 0.00 32.48 4.40
1158 1275 4.634443 GCTTACCGGTTTGTCATTGATACT 59.366 41.667 15.04 0.00 0.00 2.12
1181 1298 0.962356 AAAGGAGGACATTGCTGGCG 60.962 55.000 0.00 0.00 0.00 5.69
1186 1303 1.971167 GGACATTGCTGGCGTGGAA 60.971 57.895 0.00 0.00 0.00 3.53
1187 1304 1.315257 GGACATTGCTGGCGTGGAAT 61.315 55.000 0.00 0.00 0.00 3.01
1188 1305 0.179156 GACATTGCTGGCGTGGAATG 60.179 55.000 17.84 17.84 46.50 2.67
1191 1308 0.527565 ATTGCTGGCGTGGAATGTTC 59.472 50.000 0.00 0.00 0.00 3.18
1194 1311 1.970917 GCTGGCGTGGAATGTTCTCG 61.971 60.000 0.00 0.79 0.00 4.04
1197 1314 1.635663 GGCGTGGAATGTTCTCGGTG 61.636 60.000 10.65 0.00 0.00 4.94
1198 1315 0.669318 GCGTGGAATGTTCTCGGTGA 60.669 55.000 10.65 0.00 0.00 4.02
1200 1317 1.726853 GTGGAATGTTCTCGGTGAGG 58.273 55.000 0.00 0.00 0.00 3.86
1207 1324 3.762407 TGTTCTCGGTGAGGAATTTCA 57.238 42.857 0.00 0.00 0.00 2.69
1212 1329 3.009033 TCTCGGTGAGGAATTTCATGGTT 59.991 43.478 0.00 0.00 0.00 3.67
1214 1331 2.819608 CGGTGAGGAATTTCATGGTTGT 59.180 45.455 0.00 0.00 0.00 3.32
1216 1333 4.457603 CGGTGAGGAATTTCATGGTTGTTA 59.542 41.667 0.00 0.00 0.00 2.41
1217 1334 5.048364 CGGTGAGGAATTTCATGGTTGTTAA 60.048 40.000 0.00 0.00 0.00 2.01
1220 1337 6.813152 GTGAGGAATTTCATGGTTGTTAATGG 59.187 38.462 0.00 0.00 0.00 3.16
1221 1338 6.070881 TGAGGAATTTCATGGTTGTTAATGGG 60.071 38.462 0.00 0.00 0.00 4.00
1227 1344 9.665719 AATTTCATGGTTGTTAATGGGTTATTC 57.334 29.630 0.00 0.00 0.00 1.75
1235 1352 7.069331 GGTTGTTAATGGGTTATTCATGATGGA 59.931 37.037 0.00 0.00 0.00 3.41
1247 1364 2.158769 TCATGATGGACATACCTGCACC 60.159 50.000 0.00 0.00 37.46 5.01
1248 1365 1.284313 TGATGGACATACCTGCACCA 58.716 50.000 0.00 0.00 39.86 4.17
1249 1366 1.845791 TGATGGACATACCTGCACCAT 59.154 47.619 2.60 2.60 42.00 3.55
1250 1367 2.241941 TGATGGACATACCTGCACCATT 59.758 45.455 4.43 0.00 40.52 3.16
1253 1370 2.017049 GGACATACCTGCACCATTCAC 58.983 52.381 0.00 0.00 35.41 3.18
1258 1375 0.973632 ACCTGCACCATTCACGACTA 59.026 50.000 0.00 0.00 0.00 2.59
1263 1380 2.290008 TGCACCATTCACGACTATTGGT 60.290 45.455 0.00 0.00 41.27 3.67
1265 1382 3.973206 ACCATTCACGACTATTGGTGA 57.027 42.857 0.00 0.00 39.18 4.02
1272 1389 6.869315 TTCACGACTATTGGTGATTTTCAA 57.131 33.333 0.00 0.00 42.27 2.69
1279 1396 6.542821 ACTATTGGTGATTTTCAAGACCTCA 58.457 36.000 0.00 0.00 0.00 3.86
1281 1398 5.710513 TTGGTGATTTTCAAGACCTCATG 57.289 39.130 0.00 0.00 0.00 3.07
1283 1400 4.761739 TGGTGATTTTCAAGACCTCATGAC 59.238 41.667 0.00 0.00 0.00 3.06
1288 1405 6.373495 TGATTTTCAAGACCTCATGACTGATG 59.627 38.462 0.00 0.00 0.00 3.07
1291 1408 4.572909 TCAAGACCTCATGACTGATGTTG 58.427 43.478 0.00 0.00 31.34 3.33
1297 1414 1.065199 TCATGACTGATGTTGGAGCCC 60.065 52.381 0.00 0.00 33.29 5.19
1324 1441 4.974591 CAATGCTTTGCTGAAGTACTACC 58.025 43.478 0.00 0.00 37.69 3.18
1327 1444 2.666994 GCTTTGCTGAAGTACTACCGTC 59.333 50.000 0.00 0.00 37.69 4.79
1332 1449 2.416972 GCTGAAGTACTACCGTCAAGGG 60.417 54.545 0.00 0.00 46.96 3.95
1336 1453 2.880443 AGTACTACCGTCAAGGGAACA 58.120 47.619 0.00 0.00 46.96 3.18
1337 1454 3.438183 AGTACTACCGTCAAGGGAACAT 58.562 45.455 0.00 0.00 46.96 2.71
1347 1476 2.375174 TCAAGGGAACATACCTGCACTT 59.625 45.455 0.00 0.00 38.63 3.16
1349 1478 4.042311 TCAAGGGAACATACCTGCACTTTA 59.958 41.667 0.00 0.00 38.63 1.85
1350 1479 4.862641 AGGGAACATACCTGCACTTTAT 57.137 40.909 0.00 0.00 36.85 1.40
1353 1482 5.428783 AGGGAACATACCTGCACTTTATACT 59.571 40.000 0.00 0.00 36.85 2.12
1405 1534 3.887716 CCCATCAGGAATTGGATCTTCAC 59.112 47.826 0.00 0.00 38.24 3.18
1410 1539 5.248640 TCAGGAATTGGATCTTCACTTGTC 58.751 41.667 0.00 0.00 0.00 3.18
1422 1551 6.918067 TCTTCACTTGTCTTCCAATCTAGA 57.082 37.500 0.00 0.00 31.20 2.43
1429 1558 8.954350 CACTTGTCTTCCAATCTAGATTCATTT 58.046 33.333 15.24 0.00 31.20 2.32
1437 1566 9.690913 TTCCAATCTAGATTCATTTGTCTGATT 57.309 29.630 15.24 0.00 0.00 2.57
1469 1598 7.447545 TCATTTCTCATTCTCATTGATGGATCC 59.552 37.037 4.20 4.20 0.00 3.36
1470 1599 5.238624 TCTCATTCTCATTGATGGATCCC 57.761 43.478 9.90 0.00 0.00 3.85
1471 1600 4.912133 TCTCATTCTCATTGATGGATCCCT 59.088 41.667 9.90 0.00 0.00 4.20
1472 1601 4.981812 TCATTCTCATTGATGGATCCCTG 58.018 43.478 9.90 0.00 0.00 4.45
1474 1603 3.064773 TCTCATTGATGGATCCCTGGA 57.935 47.619 9.90 0.00 0.00 3.86
1475 1604 2.707791 TCTCATTGATGGATCCCTGGAC 59.292 50.000 9.90 0.00 0.00 4.02
1478 1607 3.528905 TCATTGATGGATCCCTGGACTTT 59.471 43.478 9.90 0.00 0.00 2.66
1483 1612 1.034292 GGATCCCTGGACTTTGCTGC 61.034 60.000 0.00 0.00 0.00 5.25
1486 1615 0.538057 TCCCTGGACTTTGCTGCTTG 60.538 55.000 0.00 0.00 0.00 4.01
1506 1635 2.046283 CATCACTTGCAACAGCACAG 57.954 50.000 0.00 0.00 38.15 3.66
1508 1637 1.302366 TCACTTGCAACAGCACAGAG 58.698 50.000 0.00 0.00 38.15 3.35
1509 1638 0.317603 CACTTGCAACAGCACAGAGC 60.318 55.000 0.00 0.00 46.19 4.09
1519 1648 1.751927 GCACAGAGCCATCTTGGGG 60.752 63.158 0.00 0.00 38.19 4.96
1521 1650 0.549950 CACAGAGCCATCTTGGGGAT 59.450 55.000 0.00 0.00 38.19 3.85
1533 1662 5.919348 ATCTTGGGGATGATGATGTACTT 57.081 39.130 0.00 0.00 32.69 2.24
1534 1663 5.296151 TCTTGGGGATGATGATGTACTTC 57.704 43.478 1.85 1.85 0.00 3.01
1535 1664 4.721274 TCTTGGGGATGATGATGTACTTCA 59.279 41.667 13.28 13.28 37.15 3.02
1574 1703 7.273381 CCTTAAACAAGCTTGGAATGATTTACG 59.727 37.037 29.18 18.55 0.00 3.18
1575 1704 5.705609 AACAAGCTTGGAATGATTTACGT 57.294 34.783 29.18 1.39 0.00 3.57
1580 1709 4.821805 AGCTTGGAATGATTTACGTATGGG 59.178 41.667 0.00 0.00 0.00 4.00
1581 1710 4.578928 GCTTGGAATGATTTACGTATGGGT 59.421 41.667 0.00 0.00 0.00 4.51
1584 1713 5.746284 TGGAATGATTTACGTATGGGTCAA 58.254 37.500 0.00 0.00 0.00 3.18
1585 1714 6.361433 TGGAATGATTTACGTATGGGTCAAT 58.639 36.000 0.00 0.00 0.00 2.57
1588 1717 8.842280 GGAATGATTTACGTATGGGTCAATTTA 58.158 33.333 0.00 0.00 0.00 1.40
1589 1718 9.878599 GAATGATTTACGTATGGGTCAATTTAG 57.121 33.333 0.00 0.00 0.00 1.85
1591 1720 8.428186 TGATTTACGTATGGGTCAATTTAGAC 57.572 34.615 0.00 0.00 37.80 2.59
1613 1742 4.959839 ACCTGTTGGTAAAAATTGGACTGT 59.040 37.500 0.00 0.00 46.43 3.55
1620 1749 5.362430 TGGTAAAAATTGGACTGTTCAAGCT 59.638 36.000 7.68 0.00 0.00 3.74
1624 1753 5.596836 AAATTGGACTGTTCAAGCTGAAA 57.403 34.783 7.68 0.00 38.22 2.69
1626 1755 4.637483 TTGGACTGTTCAAGCTGAAAAG 57.363 40.909 12.07 12.07 45.12 2.27
1632 1761 4.889409 ACTGTTCAAGCTGAAAAGAATCCA 59.111 37.500 17.70 4.17 42.89 3.41
1657 1786 9.123902 CAATCTTTTATGAGGTTATGATGTGGA 57.876 33.333 0.00 0.00 0.00 4.02
1659 1788 8.506168 TCTTTTATGAGGTTATGATGTGGAAC 57.494 34.615 0.00 0.00 37.35 3.62
1746 1878 4.712122 TGGAAGAAACAACAAGGTTCAC 57.288 40.909 0.00 0.00 46.70 3.18
1749 1881 1.063469 AGAAACAACAAGGTTCACGCG 59.937 47.619 3.53 3.53 46.70 6.01
1819 1951 6.302269 AGATTGTTATATTTGGGCTGGAGAG 58.698 40.000 0.00 0.00 0.00 3.20
1820 1952 4.437682 TGTTATATTTGGGCTGGAGAGG 57.562 45.455 0.00 0.00 0.00 3.69
1821 1953 4.044308 TGTTATATTTGGGCTGGAGAGGA 58.956 43.478 0.00 0.00 0.00 3.71
1827 1959 1.136329 TGGGCTGGAGAGGAAAAGCT 61.136 55.000 0.00 0.00 35.93 3.74
1828 1960 0.393673 GGGCTGGAGAGGAAAAGCTC 60.394 60.000 0.00 0.00 35.93 4.09
1829 1961 0.617935 GGCTGGAGAGGAAAAGCTCT 59.382 55.000 0.00 0.00 35.93 4.09
1830 1962 1.834263 GGCTGGAGAGGAAAAGCTCTA 59.166 52.381 0.00 0.00 35.93 2.43
1861 1993 6.500684 TTTTACATCTGGCTTCTGTCATTC 57.499 37.500 0.00 0.00 0.00 2.67
1870 2002 0.846427 TTCTGTCATTCCAGGGGCCT 60.846 55.000 0.84 0.00 33.14 5.19
1881 2013 4.499116 GGGGCCTAGGGGAGCTCA 62.499 72.222 17.19 0.00 33.58 4.26
1889 2021 2.664835 TAGGGGAGCTCAGCTAGGGC 62.665 65.000 17.19 0.27 39.88 5.19
1894 2026 0.033781 GAGCTCAGCTAGGGCAGATG 59.966 60.000 9.40 0.00 39.88 2.90
1895 2027 1.071128 GCTCAGCTAGGGCAGATGG 59.929 63.158 3.49 0.00 41.20 3.51
1897 2029 1.126488 CTCAGCTAGGGCAGATGGAA 58.874 55.000 0.00 0.00 41.20 3.53
1899 2031 0.179034 CAGCTAGGGCAGATGGAACC 60.179 60.000 0.00 0.00 37.00 3.62
1903 2035 2.398588 CTAGGGCAGATGGAACCAGTA 58.601 52.381 0.00 0.00 0.00 2.74
1904 2036 1.207791 AGGGCAGATGGAACCAGTAG 58.792 55.000 0.00 0.00 0.00 2.57
1910 2042 0.618458 GATGGAACCAGTAGCACCCA 59.382 55.000 0.00 0.00 0.00 4.51
1935 2067 2.124151 AGGGCATTGGCGATGGAC 60.124 61.111 16.33 0.54 42.47 4.02
1943 2075 2.036958 TTGGCGATGGACGATCATTT 57.963 45.000 0.00 0.00 45.77 2.32
1946 2078 1.528586 GGCGATGGACGATCATTTCTG 59.471 52.381 0.00 0.00 45.77 3.02
1947 2079 2.205074 GCGATGGACGATCATTTCTGT 58.795 47.619 0.00 0.00 45.77 3.41
1950 2082 3.544834 CGATGGACGATCATTTCTGTTGC 60.545 47.826 0.00 0.00 45.77 4.17
1951 2083 2.777094 TGGACGATCATTTCTGTTGCA 58.223 42.857 0.00 0.00 0.00 4.08
1953 2085 2.096496 GGACGATCATTTCTGTTGCAGG 59.904 50.000 0.00 0.00 31.51 4.85
1954 2086 2.086869 ACGATCATTTCTGTTGCAGGG 58.913 47.619 0.00 0.00 31.51 4.45
1955 2087 1.202222 CGATCATTTCTGTTGCAGGGC 60.202 52.381 0.00 0.00 31.51 5.19
1956 2088 1.820519 GATCATTTCTGTTGCAGGGCA 59.179 47.619 0.00 0.00 36.47 5.36
1957 2089 1.702182 TCATTTCTGTTGCAGGGCAA 58.298 45.000 0.00 0.00 46.80 4.52
1990 2122 3.054503 GTGTGGCAGCCTGCTCAG 61.055 66.667 17.55 0.00 44.28 3.35
2011 2143 1.837051 TCAGTGGTTCTGGCCGACT 60.837 57.895 0.00 0.00 43.76 4.18
2014 2146 0.830444 AGTGGTTCTGGCCGACTGTA 60.830 55.000 0.00 0.00 0.00 2.74
2025 2157 1.687123 GCCGACTGTACCAGGTGATAT 59.313 52.381 0.76 0.00 35.51 1.63
2026 2158 2.545952 GCCGACTGTACCAGGTGATATG 60.546 54.545 0.76 0.00 35.51 1.78
2033 2165 1.289160 ACCAGGTGATATGCAGTGGT 58.711 50.000 0.00 0.00 39.25 4.16
2040 2172 3.562973 GGTGATATGCAGTGGTGAATGAG 59.437 47.826 0.00 0.00 0.00 2.90
2056 2191 0.823356 TGAGCAAGTGGCCAACTTCC 60.823 55.000 7.24 3.73 46.60 3.46
2059 2194 2.115266 AAGTGGCCAACTTCCCCG 59.885 61.111 7.24 0.00 46.60 5.73
2078 2213 1.078848 GTGCTGCCTCCACTACCAG 60.079 63.158 0.00 0.00 0.00 4.00
2079 2214 2.124942 GCTGCCTCCACTACCAGC 60.125 66.667 0.00 0.00 43.10 4.85
2080 2215 2.586792 CTGCCTCCACTACCAGCC 59.413 66.667 0.00 0.00 0.00 4.85
2081 2216 3.009115 TGCCTCCACTACCAGCCC 61.009 66.667 0.00 0.00 0.00 5.19
2082 2217 3.009115 GCCTCCACTACCAGCCCA 61.009 66.667 0.00 0.00 0.00 5.36
2083 2218 3.036429 GCCTCCACTACCAGCCCAG 62.036 68.421 0.00 0.00 0.00 4.45
2085 2220 1.613630 CTCCACTACCAGCCCAGGT 60.614 63.158 0.00 0.00 45.72 4.00
2086 2221 0.325296 CTCCACTACCAGCCCAGGTA 60.325 60.000 0.00 0.00 43.08 3.08
2091 2231 0.541863 CTACCAGCCCAGGTAAGTGG 59.458 60.000 2.44 0.00 43.24 4.00
2092 2232 0.117541 TACCAGCCCAGGTAAGTGGA 59.882 55.000 0.00 0.00 41.05 4.02
2098 2238 1.408822 GCCCAGGTAAGTGGAATGAGG 60.409 57.143 0.00 0.00 40.44 3.86
2101 2241 2.840651 CCAGGTAAGTGGAATGAGGTCT 59.159 50.000 0.00 0.00 40.44 3.85
2162 2302 5.422666 TTGAACAGTGTCTTTACATGCAG 57.577 39.130 0.00 0.00 38.08 4.41
2163 2303 3.814842 TGAACAGTGTCTTTACATGCAGG 59.185 43.478 0.00 0.00 38.08 4.85
2167 2307 4.194640 CAGTGTCTTTACATGCAGGCTAT 58.805 43.478 0.00 0.00 38.08 2.97
2171 2311 5.584649 GTGTCTTTACATGCAGGCTATACAA 59.415 40.000 0.00 0.00 38.08 2.41
2224 2364 3.007398 GGACATATGCTAGGGAAGGAGTG 59.993 52.174 1.58 0.00 0.00 3.51
2225 2365 2.370189 ACATATGCTAGGGAAGGAGTGC 59.630 50.000 1.58 0.00 0.00 4.40
2240 2380 1.212751 GTGCGGGATGTTCTTTGCC 59.787 57.895 0.00 0.00 0.00 4.52
2247 2387 1.188863 GATGTTCTTTGCCCATGCCT 58.811 50.000 0.00 0.00 36.33 4.75
2248 2388 1.551883 GATGTTCTTTGCCCATGCCTT 59.448 47.619 0.00 0.00 36.33 4.35
2262 2402 3.170362 CCTTGGCCCTTGTCCTCA 58.830 61.111 0.00 0.00 0.00 3.86
2270 2410 3.217626 GGCCCTTGTCCTCATATTCTTG 58.782 50.000 0.00 0.00 0.00 3.02
2276 2416 3.273434 TGTCCTCATATTCTTGCAGTGC 58.727 45.455 8.58 8.58 0.00 4.40
2277 2417 3.273434 GTCCTCATATTCTTGCAGTGCA 58.727 45.455 15.37 15.37 36.47 4.57
2282 2422 4.325972 TCATATTCTTGCAGTGCAGAACA 58.674 39.130 23.38 16.87 40.61 3.18
2301 2441 5.756833 AGAACACCGGAGTAGTAAGTTTTTG 59.243 40.000 9.46 0.00 0.00 2.44
2302 2442 5.280654 ACACCGGAGTAGTAAGTTTTTGA 57.719 39.130 9.46 0.00 0.00 2.69
2303 2443 5.052481 ACACCGGAGTAGTAAGTTTTTGAC 58.948 41.667 9.46 0.00 0.00 3.18
2326 2466 9.695526 TGACTCATATTTGTTCAAATTTGGAAG 57.304 29.630 17.90 15.61 0.00 3.46
2334 2474 8.908172 TTTGTTCAAATTTGGAAGAAAAATGC 57.092 26.923 17.90 0.00 35.43 3.56
2335 2475 7.621428 TGTTCAAATTTGGAAGAAAAATGCA 57.379 28.000 17.90 0.00 0.00 3.96
2336 2476 8.223177 TGTTCAAATTTGGAAGAAAAATGCAT 57.777 26.923 17.90 0.00 0.00 3.96
2337 2477 9.334947 TGTTCAAATTTGGAAGAAAAATGCATA 57.665 25.926 17.90 0.00 0.00 3.14
2377 2517 8.908172 TTTGTTCAAATTTGGAAGAAAAATGC 57.092 26.923 17.90 0.00 35.43 3.56
2378 2518 7.621428 TGTTCAAATTTGGAAGAAAAATGCA 57.379 28.000 17.90 0.00 0.00 3.96
2379 2519 8.223177 TGTTCAAATTTGGAAGAAAAATGCAT 57.777 26.923 17.90 0.00 0.00 3.96
2380 2520 9.334947 TGTTCAAATTTGGAAGAAAAATGCATA 57.665 25.926 17.90 0.00 0.00 3.14
2424 2564 3.384789 TGAATACAGTATCGAGCAGCCTT 59.615 43.478 0.00 0.00 0.00 4.35
2426 2566 2.873133 ACAGTATCGAGCAGCCTTAC 57.127 50.000 0.00 0.00 0.00 2.34
2427 2567 2.100197 ACAGTATCGAGCAGCCTTACA 58.900 47.619 0.00 0.00 0.00 2.41
2436 2576 3.181486 CGAGCAGCCTTACAAGAGATACA 60.181 47.826 0.00 0.00 0.00 2.29
2451 2591 5.374921 AGAGATACAAAGAGGCAATGGATG 58.625 41.667 0.00 0.00 0.00 3.51
2455 2595 2.564062 ACAAAGAGGCAATGGATGGTTG 59.436 45.455 0.00 0.00 0.00 3.77
2484 2633 7.104290 GCAGAGTAAGTACCCTTGTATTTTCT 58.896 38.462 0.00 0.00 30.53 2.52
2488 2637 7.970102 AGTAAGTACCCTTGTATTTTCTGACA 58.030 34.615 0.00 0.00 30.52 3.58
2497 2646 6.691754 TTGTATTTTCTGACAAGTGAAGCA 57.308 33.333 0.00 0.00 31.98 3.91
2538 2688 7.511959 TGCCATTTTTACACTTGTACATGTA 57.488 32.000 13.51 9.33 0.00 2.29
2542 2692 8.897809 CCATTTTTACACTTGTACATGTAAACG 58.102 33.333 24.42 18.06 45.99 3.60
2549 2699 8.906636 ACACTTGTACATGTAAACGTAGATAG 57.093 34.615 13.51 0.00 0.00 2.08
2639 2789 3.797039 CGAAACAGGCCTGAGATAATGA 58.203 45.455 39.19 0.00 0.00 2.57
2644 2794 3.643792 ACAGGCCTGAGATAATGACCTAC 59.356 47.826 39.19 0.00 0.00 3.18
2650 2800 7.293535 AGGCCTGAGATAATGACCTACTTTATT 59.706 37.037 3.11 0.00 31.80 1.40
2691 2861 9.595357 GAACATGAAGTTAGTTTAAAGTGTAGC 57.405 33.333 0.00 0.00 41.51 3.58
2692 2862 8.904099 ACATGAAGTTAGTTTAAAGTGTAGCT 57.096 30.769 0.00 0.00 0.00 3.32
2697 2867 8.959705 AAGTTAGTTTAAAGTGTAGCTTCAGT 57.040 30.769 5.77 0.00 36.17 3.41
2714 2884 3.621558 TCAGTTCTATGCTTCTCTCGGA 58.378 45.455 0.00 0.00 0.00 4.55
2724 2897 4.957296 TGCTTCTCTCGGAGTTAGTTTTT 58.043 39.130 4.69 0.00 0.00 1.94
2773 2947 6.094186 TGGAACTTTGCACGCACATATATTTA 59.906 34.615 0.00 0.00 0.00 1.40
2818 2992 7.973402 ACAGGCTCAATGTATATACCATAACA 58.027 34.615 10.38 0.00 0.00 2.41
2819 2993 8.436778 ACAGGCTCAATGTATATACCATAACAA 58.563 33.333 10.38 0.00 0.00 2.83
2837 3011 9.457436 CCATAACAAACTTACCTTAACACCTAT 57.543 33.333 0.00 0.00 0.00 2.57
2840 3014 8.983702 AACAAACTTACCTTAACACCTATGAA 57.016 30.769 0.00 0.00 0.00 2.57
2845 3019 8.426569 ACTTACCTTAACACCTATGAACTACA 57.573 34.615 0.00 0.00 0.00 2.74
2849 3023 8.788325 ACCTTAACACCTATGAACTACAATTC 57.212 34.615 0.00 0.00 0.00 2.17
2855 3029 6.012858 ACACCTATGAACTACAATTCAGGGAA 60.013 38.462 13.59 0.00 41.76 3.97
2862 3036 8.885494 TGAACTACAATTCAGGGAAAATTTTG 57.115 30.769 8.47 0.00 33.62 2.44
2863 3037 8.482128 TGAACTACAATTCAGGGAAAATTTTGT 58.518 29.630 8.47 0.00 33.62 2.83
2864 3038 9.974980 GAACTACAATTCAGGGAAAATTTTGTA 57.025 29.630 8.47 1.11 28.50 2.41
2874 3048 7.440856 TCAGGGAAAATTTTGTATTGCTGAAAC 59.559 33.333 8.47 0.00 0.00 2.78
2879 3053 7.951530 AAATTTTGTATTGCTGAAACTCCAG 57.048 32.000 0.00 0.00 37.23 3.86
2890 3064 4.065789 CTGAAACTCCAGGTGTAAAGACC 58.934 47.826 0.00 0.00 36.09 3.85
2903 3077 8.375493 AGGTGTAAAGACCTGTTTCATAGATA 57.625 34.615 0.00 0.00 45.20 1.98
2945 3119 8.418681 CAATTGTTTTTCAAAAGTGCAGTTTTG 58.581 29.630 37.40 37.40 45.14 2.44
2948 3122 6.258727 TGTTTTTCAAAAGTGCAGTTTTGTGA 59.741 30.769 39.13 30.66 44.44 3.58
2952 3126 3.806625 AAAGTGCAGTTTTGTGATGCT 57.193 38.095 13.86 0.00 40.62 3.79
2956 3130 3.382546 AGTGCAGTTTTGTGATGCTCTTT 59.617 39.130 0.00 0.00 39.92 2.52
2986 3161 0.399454 CCAGGCCTGCATAGCATACT 59.601 55.000 28.39 0.00 38.13 2.12
2988 3163 1.071228 CAGGCCTGCATAGCATACTCA 59.929 52.381 22.33 0.00 38.13 3.41
2993 3168 3.249559 GCCTGCATAGCATACTCAGAAAC 59.750 47.826 4.09 0.00 38.13 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.131933 ACTGAGTCGGATGAGATGGAAAG 59.868 47.826 5.81 0.00 0.00 2.62
3 4 2.302260 GACTGAGTCGGATGAGATGGA 58.698 52.381 5.81 0.00 0.00 3.41
4 5 1.339610 GGACTGAGTCGGATGAGATGG 59.660 57.143 5.81 0.00 32.65 3.51
5 6 2.027385 TGGACTGAGTCGGATGAGATG 58.973 52.381 5.81 0.00 32.65 2.90
6 7 2.028130 GTGGACTGAGTCGGATGAGAT 58.972 52.381 5.81 0.00 32.65 2.75
27 28 3.560636 AAAATAGCATACCCTGACGCT 57.439 42.857 0.00 0.00 38.51 5.07
33 34 7.240616 AGGAATGAGGATAAAATAGCATACCCT 59.759 37.037 0.00 0.00 0.00 4.34
71 72 5.537300 AATTATACATCAGAGGACAGCGT 57.463 39.130 0.00 0.00 0.00 5.07
170 173 7.778382 TCAACATACAAGTACATAGAGAGGCTA 59.222 37.037 0.00 0.00 0.00 3.93
185 188 4.751600 TCTGTCAGCAACTCAACATACAAG 59.248 41.667 0.00 0.00 0.00 3.16
216 219 2.031683 AGAAGTAAAGCACGCACACAAC 59.968 45.455 0.00 0.00 0.00 3.32
221 224 4.666908 GCTTAAGAGAAGTAAAGCACGCAC 60.667 45.833 6.67 0.00 43.00 5.34
224 227 4.923871 TCTGCTTAAGAGAAGTAAAGCACG 59.076 41.667 6.67 2.78 46.83 5.34
264 267 9.553064 CATAGAATGGCCTCATAATAGATTACC 57.447 37.037 3.32 0.00 32.44 2.85
398 423 9.929722 TGCGTAACAAAATATAAGAGCATTTAG 57.070 29.630 0.00 0.00 0.00 1.85
401 426 8.620416 TCATGCGTAACAAAATATAAGAGCATT 58.380 29.630 0.00 0.00 39.22 3.56
403 428 7.546778 TCATGCGTAACAAAATATAAGAGCA 57.453 32.000 0.00 0.00 35.32 4.26
404 429 8.122952 ACTTCATGCGTAACAAAATATAAGAGC 58.877 33.333 0.00 0.00 0.00 4.09
419 455 9.991388 GGTTTTTACATAAATACTTCATGCGTA 57.009 29.630 5.37 0.00 30.96 4.42
425 461 9.439500 ACGCTAGGTTTTTACATAAATACTTCA 57.561 29.630 0.00 0.00 30.96 3.02
427 463 8.179615 GCACGCTAGGTTTTTACATAAATACTT 58.820 33.333 0.00 1.58 30.96 2.24
438 474 3.570550 ACCAAATGCACGCTAGGTTTTTA 59.429 39.130 0.00 0.00 0.00 1.52
444 480 3.206150 AGAATACCAAATGCACGCTAGG 58.794 45.455 0.00 0.00 0.00 3.02
446 482 5.637006 AAAAGAATACCAAATGCACGCTA 57.363 34.783 0.00 0.00 0.00 4.26
447 483 4.519540 AAAAGAATACCAAATGCACGCT 57.480 36.364 0.00 0.00 0.00 5.07
449 485 4.685628 AGCAAAAAGAATACCAAATGCACG 59.314 37.500 0.00 0.00 35.11 5.34
462 498 8.658609 CAAAGAACATTTTCTGAGCAAAAAGAA 58.341 29.630 0.00 0.00 41.56 2.52
465 501 7.903995 ACAAAGAACATTTTCTGAGCAAAAA 57.096 28.000 0.00 0.00 41.56 1.94
469 505 5.350633 CCAACAAAGAACATTTTCTGAGCA 58.649 37.500 0.00 0.00 41.56 4.26
480 516 1.748493 GTGCTCACCCAACAAAGAACA 59.252 47.619 0.00 0.00 0.00 3.18
484 520 1.750778 ACAAGTGCTCACCCAACAAAG 59.249 47.619 0.00 0.00 0.00 2.77
486 522 2.719531 TACAAGTGCTCACCCAACAA 57.280 45.000 0.00 0.00 0.00 2.83
514 550 7.506114 TCATACAGAAAACCAACTTCAGTACT 58.494 34.615 0.00 0.00 30.52 2.73
517 553 7.823745 AATCATACAGAAAACCAACTTCAGT 57.176 32.000 0.00 0.00 0.00 3.41
520 556 8.243426 TGCATAATCATACAGAAAACCAACTTC 58.757 33.333 0.00 0.00 0.00 3.01
527 563 9.846248 AGAAACTTGCATAATCATACAGAAAAC 57.154 29.630 0.00 0.00 0.00 2.43
532 568 9.102757 AGTACAGAAACTTGCATAATCATACAG 57.897 33.333 0.00 0.00 0.00 2.74
534 570 9.922305 GAAGTACAGAAACTTGCATAATCATAC 57.078 33.333 0.00 0.00 39.78 2.39
560 596 9.844790 ACAAGTTATGTTTGTCATGTCAATATG 57.155 29.630 6.21 1.34 40.06 1.78
593 630 9.900710 CAGGATAATACTGTGACTAAGTGTATC 57.099 37.037 0.00 0.00 31.56 2.24
597 634 7.113658 ACCAGGATAATACTGTGACTAAGTG 57.886 40.000 0.00 0.00 34.16 3.16
645 682 7.670009 ATATCTAGTACTACTACGTGCCAAG 57.330 40.000 0.00 0.00 0.00 3.61
646 683 7.821359 CCTATATCTAGTACTACTACGTGCCAA 59.179 40.741 0.00 0.00 0.00 4.52
647 684 7.038729 ACCTATATCTAGTACTACTACGTGCCA 60.039 40.741 0.00 0.00 0.00 4.92
648 685 7.277539 CACCTATATCTAGTACTACTACGTGCC 59.722 44.444 0.00 0.00 0.00 5.01
649 686 7.816995 ACACCTATATCTAGTACTACTACGTGC 59.183 40.741 0.00 0.00 0.00 5.34
650 687 9.703892 AACACCTATATCTAGTACTACTACGTG 57.296 37.037 0.00 2.56 0.00 4.49
684 721 5.399038 CCAGGATAGGGTTGTTGATAATGGT 60.399 44.000 0.00 0.00 0.00 3.55
685 722 5.072741 CCAGGATAGGGTTGTTGATAATGG 58.927 45.833 0.00 0.00 0.00 3.16
717 754 1.946768 TCGGGAAAAACACAGCTTCAG 59.053 47.619 0.00 0.00 0.00 3.02
719 756 3.127030 CCTATCGGGAAAAACACAGCTTC 59.873 47.826 0.00 0.00 37.23 3.86
736 773 5.517770 GCAATTCAACATTTCACAGCCTATC 59.482 40.000 0.00 0.00 0.00 2.08
739 776 3.322828 AGCAATTCAACATTTCACAGCCT 59.677 39.130 0.00 0.00 0.00 4.58
741 778 3.120786 GCAGCAATTCAACATTTCACAGC 60.121 43.478 0.00 0.00 0.00 4.40
744 781 4.553323 AGAGCAGCAATTCAACATTTCAC 58.447 39.130 0.00 0.00 0.00 3.18
746 783 8.965172 CATATTAGAGCAGCAATTCAACATTTC 58.035 33.333 0.00 0.00 0.00 2.17
751 788 6.183360 ACCACATATTAGAGCAGCAATTCAAC 60.183 38.462 0.00 0.00 0.00 3.18
765 802 8.153479 TGCAGCAAAAGTATACCACATATTAG 57.847 34.615 0.00 0.00 0.00 1.73
815 852 8.410141 TCAAAATGTACTCAAAAGACGGAATTT 58.590 29.630 0.00 0.00 0.00 1.82
821 858 8.708742 TCAGTATCAAAATGTACTCAAAAGACG 58.291 33.333 0.00 0.00 0.00 4.18
846 883 7.918643 ACAATCAACACACATTTTCCAATTTC 58.081 30.769 0.00 0.00 0.00 2.17
847 884 7.862512 ACAATCAACACACATTTTCCAATTT 57.137 28.000 0.00 0.00 0.00 1.82
885 922 1.070376 CACACATCAGCAGTCAACACG 60.070 52.381 0.00 0.00 0.00 4.49
889 926 2.916640 TCAACACACATCAGCAGTCAA 58.083 42.857 0.00 0.00 0.00 3.18
934 971 6.303259 CGACATAAGCAGAAAAACAAGTAAGC 59.697 38.462 0.00 0.00 0.00 3.09
937 974 5.992829 TCCGACATAAGCAGAAAAACAAGTA 59.007 36.000 0.00 0.00 0.00 2.24
938 975 4.819630 TCCGACATAAGCAGAAAAACAAGT 59.180 37.500 0.00 0.00 0.00 3.16
980 1034 7.537596 TCCATTCCTTAAAAGCAGAAAATCA 57.462 32.000 0.00 0.00 0.00 2.57
981 1035 8.253113 TGATCCATTCCTTAAAAGCAGAAAATC 58.747 33.333 0.00 0.00 0.00 2.17
982 1036 8.137745 TGATCCATTCCTTAAAAGCAGAAAAT 57.862 30.769 0.00 0.00 0.00 1.82
1010 1064 1.335051 GCAAGAAGTCGAAGGTTTGGC 60.335 52.381 0.00 0.00 0.00 4.52
1015 1069 2.154462 CCAATGCAAGAAGTCGAAGGT 58.846 47.619 0.00 0.00 0.00 3.50
1020 1074 2.096496 GGTGATCCAATGCAAGAAGTCG 59.904 50.000 0.00 0.00 0.00 4.18
1021 1075 2.096496 CGGTGATCCAATGCAAGAAGTC 59.904 50.000 0.00 0.00 0.00 3.01
1022 1076 2.086869 CGGTGATCCAATGCAAGAAGT 58.913 47.619 0.00 0.00 0.00 3.01
1032 1086 3.309436 CTGGCGGACGGTGATCCAA 62.309 63.158 0.00 0.00 38.87 3.53
1040 1094 3.622060 AATTGGGTCTGGCGGACGG 62.622 63.158 19.64 0.00 45.35 4.79
1043 1097 1.002624 GTCAATTGGGTCTGGCGGA 60.003 57.895 5.42 0.00 0.00 5.54
1046 1100 0.608035 TTCGGTCAATTGGGTCTGGC 60.608 55.000 5.42 0.00 0.00 4.85
1049 1103 4.855340 ACAATATTCGGTCAATTGGGTCT 58.145 39.130 5.42 0.00 35.40 3.85
1062 1179 9.582431 TCTCCAAAGTAAAGAGTACAATATTCG 57.418 33.333 0.00 0.00 0.00 3.34
1067 1184 5.638234 GCGTCTCCAAAGTAAAGAGTACAAT 59.362 40.000 0.00 0.00 0.00 2.71
1070 1187 4.621886 CAGCGTCTCCAAAGTAAAGAGTAC 59.378 45.833 0.00 0.00 0.00 2.73
1072 1189 3.654414 CAGCGTCTCCAAAGTAAAGAGT 58.346 45.455 0.00 0.00 0.00 3.24
1073 1190 2.413453 GCAGCGTCTCCAAAGTAAAGAG 59.587 50.000 0.00 0.00 0.00 2.85
1096 1213 3.639538 GACCAACGTCGCTACATATGAT 58.360 45.455 10.38 0.00 0.00 2.45
1137 1254 6.711194 TGAAAGTATCAATGACAAACCGGTAA 59.289 34.615 8.00 0.00 34.30 2.85
1158 1275 2.892852 CCAGCAATGTCCTCCTTTGAAA 59.107 45.455 0.00 0.00 31.53 2.69
1164 1281 2.270205 CGCCAGCAATGTCCTCCT 59.730 61.111 0.00 0.00 0.00 3.69
1165 1282 2.045926 ACGCCAGCAATGTCCTCC 60.046 61.111 0.00 0.00 0.00 4.30
1170 1287 0.895100 ACATTCCACGCCAGCAATGT 60.895 50.000 1.45 1.45 35.16 2.71
1171 1288 0.244450 AACATTCCACGCCAGCAATG 59.756 50.000 0.00 0.00 33.27 2.82
1181 1298 1.275291 TCCTCACCGAGAACATTCCAC 59.725 52.381 0.00 0.00 0.00 4.02
1186 1303 4.286297 TGAAATTCCTCACCGAGAACAT 57.714 40.909 0.00 0.00 0.00 2.71
1187 1304 3.762407 TGAAATTCCTCACCGAGAACA 57.238 42.857 0.00 0.00 0.00 3.18
1188 1305 3.375299 CCATGAAATTCCTCACCGAGAAC 59.625 47.826 0.00 0.00 0.00 3.01
1191 1308 2.991250 ACCATGAAATTCCTCACCGAG 58.009 47.619 0.00 0.00 0.00 4.63
1194 1311 4.871933 AACAACCATGAAATTCCTCACC 57.128 40.909 0.00 0.00 0.00 4.02
1197 1314 6.070824 ACCCATTAACAACCATGAAATTCCTC 60.071 38.462 0.00 0.00 0.00 3.71
1198 1315 5.784906 ACCCATTAACAACCATGAAATTCCT 59.215 36.000 0.00 0.00 0.00 3.36
1200 1317 9.665719 AATAACCCATTAACAACCATGAAATTC 57.334 29.630 0.00 0.00 0.00 2.17
1207 1324 7.969690 TCATGAATAACCCATTAACAACCAT 57.030 32.000 0.00 0.00 0.00 3.55
1212 1329 7.122048 TGTCCATCATGAATAACCCATTAACA 58.878 34.615 0.00 0.00 0.00 2.41
1214 1331 9.295825 GTATGTCCATCATGAATAACCCATTAA 57.704 33.333 0.00 0.00 37.91 1.40
1216 1333 6.721208 GGTATGTCCATCATGAATAACCCATT 59.279 38.462 0.00 0.00 37.91 3.16
1217 1334 6.045931 AGGTATGTCCATCATGAATAACCCAT 59.954 38.462 0.00 0.66 37.91 4.00
1220 1337 5.182001 GCAGGTATGTCCATCATGAATAACC 59.818 44.000 0.00 1.27 37.91 2.85
1221 1338 5.764686 TGCAGGTATGTCCATCATGAATAAC 59.235 40.000 0.00 0.00 37.91 1.89
1227 1344 2.224606 GGTGCAGGTATGTCCATCATG 58.775 52.381 0.00 0.00 37.91 3.07
1235 1352 1.277842 TCGTGAATGGTGCAGGTATGT 59.722 47.619 0.00 0.00 0.00 2.29
1247 1364 6.841119 TGAAAATCACCAATAGTCGTGAATG 58.159 36.000 0.00 0.00 42.02 2.67
1248 1365 7.390440 TCTTGAAAATCACCAATAGTCGTGAAT 59.610 33.333 0.00 0.00 42.02 2.57
1249 1366 6.708502 TCTTGAAAATCACCAATAGTCGTGAA 59.291 34.615 0.00 0.00 42.02 3.18
1250 1367 6.147164 GTCTTGAAAATCACCAATAGTCGTGA 59.853 38.462 0.00 0.00 42.85 4.35
1253 1370 5.643777 AGGTCTTGAAAATCACCAATAGTCG 59.356 40.000 0.00 0.00 32.43 4.18
1258 1375 6.012113 TCATGAGGTCTTGAAAATCACCAAT 58.988 36.000 0.00 0.00 32.43 3.16
1263 1380 5.868454 TCAGTCATGAGGTCTTGAAAATCA 58.132 37.500 0.00 0.00 32.82 2.57
1264 1381 6.783162 CATCAGTCATGAGGTCTTGAAAATC 58.217 40.000 0.00 0.00 39.29 2.17
1265 1382 6.754702 CATCAGTCATGAGGTCTTGAAAAT 57.245 37.500 0.00 0.00 39.29 1.82
1279 1396 1.064906 CAGGGCTCCAACATCAGTCAT 60.065 52.381 0.00 0.00 0.00 3.06
1281 1398 0.615331 TCAGGGCTCCAACATCAGTC 59.385 55.000 0.00 0.00 0.00 3.51
1283 1400 0.747283 GCTCAGGGCTCCAACATCAG 60.747 60.000 0.00 0.00 38.06 2.90
1288 1405 1.941999 GCATTGCTCAGGGCTCCAAC 61.942 60.000 0.16 0.00 42.39 3.77
1291 1408 0.969409 AAAGCATTGCTCAGGGCTCC 60.969 55.000 12.39 0.00 38.25 4.70
1315 1432 3.233507 TGTTCCCTTGACGGTAGTACTT 58.766 45.455 0.00 0.00 0.00 2.24
1316 1433 2.880443 TGTTCCCTTGACGGTAGTACT 58.120 47.619 0.00 0.00 0.00 2.73
1317 1434 3.881937 ATGTTCCCTTGACGGTAGTAC 57.118 47.619 0.00 0.00 0.00 2.73
1324 1441 1.338674 TGCAGGTATGTTCCCTTGACG 60.339 52.381 0.00 0.00 0.00 4.35
1327 1444 2.496899 AGTGCAGGTATGTTCCCTTG 57.503 50.000 0.00 0.00 0.00 3.61
1332 1449 6.258068 GGTCAGTATAAAGTGCAGGTATGTTC 59.742 42.308 0.00 0.00 0.00 3.18
1336 1453 5.950544 TGGTCAGTATAAAGTGCAGGTAT 57.049 39.130 0.00 0.00 0.00 2.73
1337 1454 5.661312 AGATGGTCAGTATAAAGTGCAGGTA 59.339 40.000 0.00 0.00 0.00 3.08
1388 1517 5.251764 AGACAAGTGAAGATCCAATTCCTG 58.748 41.667 0.00 0.00 0.00 3.86
1399 1528 6.918067 TCTAGATTGGAAGACAAGTGAAGA 57.082 37.500 0.00 0.00 43.48 2.87
1401 1530 7.679783 TGAATCTAGATTGGAAGACAAGTGAA 58.320 34.615 22.61 0.00 43.48 3.18
1405 1534 8.954350 ACAAATGAATCTAGATTGGAAGACAAG 58.046 33.333 22.61 9.58 43.48 3.16
1410 1539 8.728337 TCAGACAAATGAATCTAGATTGGAAG 57.272 34.615 22.61 10.50 0.00 3.46
1446 1575 6.066690 GGGATCCATCAATGAGAATGAGAAA 58.933 40.000 15.23 0.00 0.00 2.52
1452 1581 3.985452 TCCAGGGATCCATCAATGAGAAT 59.015 43.478 15.23 0.00 0.00 2.40
1462 1591 1.064166 CAGCAAAGTCCAGGGATCCAT 60.064 52.381 15.23 2.55 0.00 3.41
1469 1598 1.288127 GCAAGCAGCAAAGTCCAGG 59.712 57.895 0.00 0.00 44.79 4.45
1470 1599 4.959446 GCAAGCAGCAAAGTCCAG 57.041 55.556 0.00 0.00 44.79 3.86
1544 1673 6.248433 TCATTCCAAGCTTGTTTAAGGAGAT 58.752 36.000 24.35 7.62 34.40 2.75
1552 1681 6.084326 ACGTAAATCATTCCAAGCTTGTTT 57.916 33.333 24.35 17.99 0.00 2.83
1553 1682 5.705609 ACGTAAATCATTCCAAGCTTGTT 57.294 34.783 24.35 12.70 0.00 2.83
1580 1709 9.758651 AATTTTTACCAACAGGTCTAAATTGAC 57.241 29.630 13.93 0.00 37.26 3.18
1581 1710 9.757227 CAATTTTTACCAACAGGTCTAAATTGA 57.243 29.630 24.58 5.24 45.41 2.57
1584 1713 8.364894 GTCCAATTTTTACCAACAGGTCTAAAT 58.635 33.333 0.00 0.00 36.84 1.40
1585 1714 7.562088 AGTCCAATTTTTACCAACAGGTCTAAA 59.438 33.333 0.00 0.00 36.84 1.85
1588 1717 5.301805 CAGTCCAATTTTTACCAACAGGTCT 59.698 40.000 0.00 0.00 36.84 3.85
1589 1718 5.068591 ACAGTCCAATTTTTACCAACAGGTC 59.931 40.000 0.00 0.00 36.84 3.85
1591 1720 5.529581 ACAGTCCAATTTTTACCAACAGG 57.470 39.130 0.00 0.00 0.00 4.00
1592 1721 6.568869 TGAACAGTCCAATTTTTACCAACAG 58.431 36.000 0.00 0.00 0.00 3.16
1593 1722 6.531503 TGAACAGTCCAATTTTTACCAACA 57.468 33.333 0.00 0.00 0.00 3.33
1600 1729 5.596836 TCAGCTTGAACAGTCCAATTTTT 57.403 34.783 0.00 0.00 0.00 1.94
1609 1738 4.889409 TGGATTCTTTTCAGCTTGAACAGT 59.111 37.500 10.06 0.00 35.89 3.55
1613 1742 6.906157 AGATTGGATTCTTTTCAGCTTGAA 57.094 33.333 0.00 0.00 34.03 2.69
1632 1761 9.699410 TTCCACATCATAACCTCATAAAAGATT 57.301 29.630 0.00 0.00 0.00 2.40
1644 1773 2.684881 CCTGCTGTTCCACATCATAACC 59.315 50.000 0.00 0.00 0.00 2.85
1645 1774 2.098117 GCCTGCTGTTCCACATCATAAC 59.902 50.000 0.00 0.00 0.00 1.89
1651 1780 1.303888 CCTGCCTGCTGTTCCACAT 60.304 57.895 0.00 0.00 0.00 3.21
1652 1781 2.113774 CCTGCCTGCTGTTCCACA 59.886 61.111 0.00 0.00 0.00 4.17
1657 1786 4.673375 CCCTGCCTGCCTGCTGTT 62.673 66.667 0.00 0.00 0.00 3.16
1703 1835 9.699410 TTCCAAAATTGTATAATGACTGAGGAT 57.301 29.630 0.00 0.00 0.00 3.24
1704 1836 9.177608 CTTCCAAAATTGTATAATGACTGAGGA 57.822 33.333 0.00 0.00 0.00 3.71
1739 1871 1.098712 TTTTTCAGGCGCGTGAACCT 61.099 50.000 36.98 10.40 36.15 3.50
1740 1872 1.357334 TTTTTCAGGCGCGTGAACC 59.643 52.632 36.98 8.03 36.15 3.62
1796 1928 5.474876 CCTCTCCAGCCCAAATATAACAATC 59.525 44.000 0.00 0.00 0.00 2.67
1797 1929 5.134339 TCCTCTCCAGCCCAAATATAACAAT 59.866 40.000 0.00 0.00 0.00 2.71
1798 1930 4.476846 TCCTCTCCAGCCCAAATATAACAA 59.523 41.667 0.00 0.00 0.00 2.83
1802 1934 5.694995 CTTTTCCTCTCCAGCCCAAATATA 58.305 41.667 0.00 0.00 0.00 0.86
1804 1936 3.877735 GCTTTTCCTCTCCAGCCCAAATA 60.878 47.826 0.00 0.00 0.00 1.40
1830 1962 8.806146 ACAGAAGCCAGATGTAAAATTTACAAT 58.194 29.630 20.59 10.95 0.00 2.71
1846 1978 1.681166 CCCTGGAATGACAGAAGCCAG 60.681 57.143 0.00 0.00 44.40 4.85
1847 1979 0.329261 CCCTGGAATGACAGAAGCCA 59.671 55.000 0.00 0.00 40.97 4.75
1848 1980 0.394899 CCCCTGGAATGACAGAAGCC 60.395 60.000 0.00 0.00 40.97 4.35
1849 1981 1.034292 GCCCCTGGAATGACAGAAGC 61.034 60.000 0.00 0.00 40.97 3.86
1870 2002 1.544196 CCCTAGCTGAGCTCCCCTA 59.456 63.158 11.68 10.42 40.44 3.53
1881 2013 0.621571 TGGTTCCATCTGCCCTAGCT 60.622 55.000 0.00 0.00 40.80 3.32
1889 2021 1.407437 GGGTGCTACTGGTTCCATCTG 60.407 57.143 0.00 0.00 0.00 2.90
1894 2026 1.463674 CATTGGGTGCTACTGGTTCC 58.536 55.000 0.00 0.00 0.00 3.62
1895 2027 1.463674 CCATTGGGTGCTACTGGTTC 58.536 55.000 0.00 0.00 0.00 3.62
1910 2042 2.662070 GCCAATGCCCTGCACCATT 61.662 57.895 0.00 0.00 43.04 3.16
1935 2067 1.202222 GCCCTGCAACAGAAATGATCG 60.202 52.381 0.00 0.00 32.44 3.69
1950 2082 2.042639 CCCATCCCCTTTGCCCTG 60.043 66.667 0.00 0.00 0.00 4.45
1951 2083 3.358824 CCCCATCCCCTTTGCCCT 61.359 66.667 0.00 0.00 0.00 5.19
1953 2085 4.079961 AGCCCCATCCCCTTTGCC 62.080 66.667 0.00 0.00 0.00 4.52
1954 2086 2.761213 CAGCCCCATCCCCTTTGC 60.761 66.667 0.00 0.00 0.00 3.68
1955 2087 2.042639 CCAGCCCCATCCCCTTTG 60.043 66.667 0.00 0.00 0.00 2.77
1956 2088 3.358824 CCCAGCCCCATCCCCTTT 61.359 66.667 0.00 0.00 0.00 3.11
1957 2089 4.720443 ACCCAGCCCCATCCCCTT 62.720 66.667 0.00 0.00 0.00 3.95
1990 2122 3.901797 CGGCCAGAACCACTGACCC 62.902 68.421 2.24 0.00 44.59 4.46
2011 2143 2.170397 CCACTGCATATCACCTGGTACA 59.830 50.000 0.00 0.00 0.00 2.90
2014 2146 1.065199 CACCACTGCATATCACCTGGT 60.065 52.381 0.00 0.00 33.08 4.00
2025 2157 1.241165 CTTGCTCATTCACCACTGCA 58.759 50.000 0.00 0.00 0.00 4.41
2026 2158 1.068748 CACTTGCTCATTCACCACTGC 60.069 52.381 0.00 0.00 0.00 4.40
2033 2165 0.961019 GTTGGCCACTTGCTCATTCA 59.039 50.000 3.88 0.00 40.92 2.57
2059 2194 2.269241 GGTAGTGGAGGCAGCACC 59.731 66.667 0.00 0.00 39.61 5.01
2070 2205 1.066143 CACTTACCTGGGCTGGTAGTG 60.066 57.143 0.00 16.22 42.74 2.74
2078 2213 1.408822 CCTCATTCCACTTACCTGGGC 60.409 57.143 0.00 0.00 31.41 5.36
2079 2214 1.916181 ACCTCATTCCACTTACCTGGG 59.084 52.381 0.00 0.00 31.41 4.45
2080 2215 2.840651 AGACCTCATTCCACTTACCTGG 59.159 50.000 0.00 0.00 0.00 4.45
2081 2216 3.772025 AGAGACCTCATTCCACTTACCTG 59.228 47.826 0.00 0.00 0.00 4.00
2082 2217 4.067944 AGAGACCTCATTCCACTTACCT 57.932 45.455 0.00 0.00 0.00 3.08
2083 2218 4.508662 CAAGAGACCTCATTCCACTTACC 58.491 47.826 0.00 0.00 0.00 2.85
2085 2220 4.168101 ACCAAGAGACCTCATTCCACTTA 58.832 43.478 0.00 0.00 0.00 2.24
2086 2221 2.982488 ACCAAGAGACCTCATTCCACTT 59.018 45.455 0.00 0.00 0.00 3.16
2091 2231 4.397417 CCATGAAACCAAGAGACCTCATTC 59.603 45.833 0.00 0.00 0.00 2.67
2092 2232 4.043310 TCCATGAAACCAAGAGACCTCATT 59.957 41.667 0.00 0.00 0.00 2.57
2098 2238 8.506168 TTTATGTATCCATGAAACCAAGAGAC 57.494 34.615 0.00 0.00 32.29 3.36
2142 2282 3.365364 GCCTGCATGTAAAGACACTGTTC 60.365 47.826 0.00 0.00 38.76 3.18
2162 2302 5.437060 TCCATTTTCTGGTCTTGTATAGCC 58.563 41.667 0.00 0.00 46.08 3.93
2163 2303 8.677148 TTATCCATTTTCTGGTCTTGTATAGC 57.323 34.615 0.00 0.00 46.08 2.97
2167 2307 7.638444 TGGATTATCCATTTTCTGGTCTTGTA 58.362 34.615 10.29 0.00 42.67 2.41
2199 2339 4.678256 TCCTTCCCTAGCATATGTCCTAG 58.322 47.826 4.29 7.38 0.00 3.02
2201 2341 3.116551 ACTCCTTCCCTAGCATATGTCCT 60.117 47.826 4.29 0.00 0.00 3.85
2204 2344 2.370189 GCACTCCTTCCCTAGCATATGT 59.630 50.000 4.29 0.00 0.00 2.29
2211 2351 0.760945 ATCCCGCACTCCTTCCCTAG 60.761 60.000 0.00 0.00 0.00 3.02
2224 2364 1.322538 ATGGGCAAAGAACATCCCGC 61.323 55.000 0.00 0.00 41.65 6.13
2225 2365 0.457035 CATGGGCAAAGAACATCCCG 59.543 55.000 0.00 0.00 41.65 5.14
2247 2387 2.852449 AGAATATGAGGACAAGGGCCAA 59.148 45.455 6.18 0.00 0.00 4.52
2248 2388 2.492025 AGAATATGAGGACAAGGGCCA 58.508 47.619 6.18 0.00 0.00 5.36
2253 2393 4.201891 GCACTGCAAGAATATGAGGACAAG 60.202 45.833 0.00 0.00 37.43 3.16
2262 2402 3.441572 GGTGTTCTGCACTGCAAGAATAT 59.558 43.478 4.99 0.00 46.86 1.28
2276 2416 4.516365 AACTTACTACTCCGGTGTTCTG 57.484 45.455 15.36 8.25 0.00 3.02
2277 2417 5.541953 AAAACTTACTACTCCGGTGTTCT 57.458 39.130 15.36 2.87 0.00 3.01
2282 2422 5.069516 TGAGTCAAAAACTTACTACTCCGGT 59.930 40.000 0.00 0.00 38.74 5.28
2301 2441 9.912634 TCTTCCAAATTTGAACAAATATGAGTC 57.087 29.630 19.86 0.00 39.88 3.36
2351 2491 9.518906 GCATTTTTCTTCCAAATTTGAACAAAT 57.481 25.926 19.86 10.94 42.35 2.32
2352 2492 8.517878 TGCATTTTTCTTCCAAATTTGAACAAA 58.482 25.926 19.86 9.47 34.46 2.83
2353 2493 8.048534 TGCATTTTTCTTCCAAATTTGAACAA 57.951 26.923 19.86 8.12 0.00 2.83
2354 2494 7.621428 TGCATTTTTCTTCCAAATTTGAACA 57.379 28.000 19.86 0.16 0.00 3.18
2401 2541 3.053455 GGCTGCTCGATACTGTATTCAC 58.947 50.000 1.22 0.00 0.00 3.18
2417 2557 5.178797 TCTTTGTATCTCTTGTAAGGCTGC 58.821 41.667 0.00 0.00 0.00 5.25
2424 2564 6.070251 TCCATTGCCTCTTTGTATCTCTTGTA 60.070 38.462 0.00 0.00 0.00 2.41
2426 2566 5.188434 TCCATTGCCTCTTTGTATCTCTTG 58.812 41.667 0.00 0.00 0.00 3.02
2427 2567 5.441718 TCCATTGCCTCTTTGTATCTCTT 57.558 39.130 0.00 0.00 0.00 2.85
2436 2576 2.827921 GTCAACCATCCATTGCCTCTTT 59.172 45.455 0.00 0.00 0.00 2.52
2451 2591 3.586892 GGTACTTACTCTGCAGTCAACC 58.413 50.000 14.67 9.11 33.62 3.77
2455 2595 3.258622 ACAAGGGTACTTACTCTGCAGTC 59.741 47.826 14.67 0.00 37.04 3.51
2484 2633 5.124297 CCATAACATCATGCTTCACTTGTCA 59.876 40.000 0.00 0.00 0.00 3.58
2488 2637 5.356190 CAGACCATAACATCATGCTTCACTT 59.644 40.000 0.00 0.00 0.00 3.16
2497 2646 4.442401 TGGCATCAGACCATAACATCAT 57.558 40.909 0.00 0.00 30.29 2.45
2582 2732 4.442612 GGCTCTAGCAGATTGAATGACAGA 60.443 45.833 4.07 0.00 44.36 3.41
2583 2733 3.808726 GGCTCTAGCAGATTGAATGACAG 59.191 47.826 4.07 0.00 44.36 3.51
2639 2789 9.462606 CCCTATTCAAACTCAAATAAAGTAGGT 57.537 33.333 0.00 0.00 0.00 3.08
2650 2800 7.004086 ACTTCATGTTCCCTATTCAAACTCAA 58.996 34.615 0.00 0.00 0.00 3.02
2690 2860 3.796178 CGAGAGAAGCATAGAACTGAAGC 59.204 47.826 0.00 0.00 0.00 3.86
2691 2861 4.097135 TCCGAGAGAAGCATAGAACTGAAG 59.903 45.833 0.00 0.00 0.00 3.02
2692 2862 4.017126 TCCGAGAGAAGCATAGAACTGAA 58.983 43.478 0.00 0.00 0.00 3.02
2697 2867 5.194432 ACTAACTCCGAGAGAAGCATAGAA 58.806 41.667 1.33 0.00 33.32 2.10
2724 2897 5.048516 TCAGAATGGCAAGCTTCAGCTAAA 61.049 41.667 0.63 0.00 44.55 1.85
2731 2904 2.865343 CCATCAGAATGGCAAGCTTC 57.135 50.000 0.00 0.00 45.88 3.86
2816 2990 8.215736 AGTTCATAGGTGTTAAGGTAAGTTTGT 58.784 33.333 0.00 0.00 0.00 2.83
2818 2992 9.716531 GTAGTTCATAGGTGTTAAGGTAAGTTT 57.283 33.333 0.00 0.00 0.00 2.66
2819 2993 8.873144 TGTAGTTCATAGGTGTTAAGGTAAGTT 58.127 33.333 0.00 0.00 0.00 2.66
2827 3001 7.827236 CCCTGAATTGTAGTTCATAGGTGTTAA 59.173 37.037 0.00 0.00 37.47 2.01
2828 3002 7.181305 TCCCTGAATTGTAGTTCATAGGTGTTA 59.819 37.037 0.00 0.00 37.47 2.41
2829 3003 6.012858 TCCCTGAATTGTAGTTCATAGGTGTT 60.013 38.462 0.00 0.00 37.47 3.32
2830 3004 5.487488 TCCCTGAATTGTAGTTCATAGGTGT 59.513 40.000 0.00 0.00 37.47 4.16
2831 3005 5.989477 TCCCTGAATTGTAGTTCATAGGTG 58.011 41.667 0.00 0.00 37.47 4.00
2832 3006 6.636454 TTCCCTGAATTGTAGTTCATAGGT 57.364 37.500 0.00 0.00 37.47 3.08
2833 3007 7.938140 TTTTCCCTGAATTGTAGTTCATAGG 57.062 36.000 0.00 0.00 37.47 2.57
2837 3011 8.482128 ACAAAATTTTCCCTGAATTGTAGTTCA 58.518 29.630 0.00 0.00 36.70 3.18
2845 3019 8.156165 TCAGCAATACAAAATTTTCCCTGAATT 58.844 29.630 0.00 0.00 0.00 2.17
2849 3023 7.442062 AGTTTCAGCAATACAAAATTTTCCCTG 59.558 33.333 0.00 2.39 0.00 4.45
2855 3029 6.930722 CCTGGAGTTTCAGCAATACAAAATTT 59.069 34.615 0.00 0.00 33.64 1.82
2861 3035 3.181445 ACACCTGGAGTTTCAGCAATACA 60.181 43.478 0.00 0.00 33.64 2.29
2862 3036 3.412386 ACACCTGGAGTTTCAGCAATAC 58.588 45.455 0.00 0.00 33.64 1.89
2863 3037 3.788227 ACACCTGGAGTTTCAGCAATA 57.212 42.857 0.00 0.00 33.64 1.90
2864 3038 2.664402 ACACCTGGAGTTTCAGCAAT 57.336 45.000 0.00 0.00 33.64 3.56
2918 3092 7.432350 AACTGCACTTTTGAAAAACAATTGA 57.568 28.000 13.59 0.00 38.36 2.57
2919 3093 8.418681 CAAAACTGCACTTTTGAAAAACAATTG 58.581 29.630 20.51 3.24 41.72 2.32
2921 3095 7.590689 CACAAAACTGCACTTTTGAAAAACAAT 59.409 29.630 27.65 8.91 41.72 2.71
2930 3104 3.866910 AGCATCACAAAACTGCACTTTTG 59.133 39.130 22.36 22.36 43.80 2.44
2956 3130 2.968574 TGCAGGCCTGGATTTAACAAAA 59.031 40.909 33.46 0.00 0.00 2.44
2960 3134 2.294512 GCTATGCAGGCCTGGATTTAAC 59.705 50.000 40.06 24.07 41.85 2.01
2963 3137 0.259647 TGCTATGCAGGCCTGGATTT 59.740 50.000 40.06 23.81 41.85 2.17
2986 3161 5.555017 AGCTGCAGATTTAAGAGTTTCTGA 58.445 37.500 20.43 0.00 38.25 3.27
2988 3163 7.551035 CATAGCTGCAGATTTAAGAGTTTCT 57.449 36.000 20.43 2.18 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.