Multiple sequence alignment - TraesCS4A01G279000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G279000 chr4A 100.000 6168 0 0 1 6168 586679377 586673210 0.000000e+00 11391.0
1 TraesCS4A01G279000 chr4A 98.239 3464 51 6 2707 6168 456402970 456399515 0.000000e+00 6050.0
2 TraesCS4A01G279000 chr4A 97.365 2732 54 4 1 2716 456416187 456413458 0.000000e+00 4630.0
3 TraesCS4A01G279000 chr4A 93.070 1847 88 18 458 2288 538493405 538491583 0.000000e+00 2665.0
4 TraesCS4A01G279000 chr4A 87.586 1740 158 27 764 2484 585686913 585688613 0.000000e+00 1964.0
5 TraesCS4A01G279000 chr4A 85.467 1211 131 26 3349 4548 585690179 585691355 0.000000e+00 1219.0
6 TraesCS4A01G279000 chr4A 87.921 1010 86 14 3549 4537 538490078 538489084 0.000000e+00 1157.0
7 TraesCS4A01G279000 chr4A 89.720 856 77 5 4911 5756 586089515 586090369 0.000000e+00 1083.0
8 TraesCS4A01G279000 chr4A 92.530 589 42 2 2479 3065 585688652 585689240 0.000000e+00 843.0
9 TraesCS4A01G279000 chr4A 79.412 1190 172 35 4770 5931 576606316 576605172 0.000000e+00 773.0
10 TraesCS4A01G279000 chr4A 88.393 336 35 4 3203 3538 538490454 538490123 9.630000e-108 401.0
11 TraesCS4A01G279000 chr4A 87.500 136 12 2 4775 4905 586088081 586088216 1.070000e-32 152.0
12 TraesCS4A01G279000 chr4D 94.650 2131 84 16 956 3065 14924629 14926750 0.000000e+00 3277.0
13 TraesCS4A01G279000 chr4D 89.150 1530 97 16 4670 6168 14400962 14399471 0.000000e+00 1842.0
14 TraesCS4A01G279000 chr4D 91.424 1306 72 17 956 2230 14424392 14423096 0.000000e+00 1755.0
15 TraesCS4A01G279000 chr4D 89.187 1452 79 22 4746 6168 14926928 14928330 0.000000e+00 1740.0
16 TraesCS4A01G279000 chr4D 86.879 1509 126 30 3086 4548 15154079 15152597 0.000000e+00 1624.0
17 TraesCS4A01G279000 chr4D 89.744 1053 78 16 1442 2483 15157415 15156382 0.000000e+00 1319.0
18 TraesCS4A01G279000 chr4D 95.238 588 24 2 2482 3065 14403520 14402933 0.000000e+00 928.0
19 TraesCS4A01G279000 chr4D 92.687 588 37 6 2482 3065 15156339 15155754 0.000000e+00 843.0
20 TraesCS4A01G279000 chr4D 92.796 583 37 4 3086 3668 14402235 14401658 0.000000e+00 839.0
21 TraesCS4A01G279000 chr4D 81.626 947 83 38 39 916 14923706 14924630 0.000000e+00 701.0
22 TraesCS4A01G279000 chr4D 91.886 456 23 3 4100 4543 14401418 14400965 5.250000e-175 625.0
23 TraesCS4A01G279000 chr4D 83.442 459 35 19 28 459 15158813 15158369 7.500000e-104 388.0
24 TraesCS4A01G279000 chr4D 88.017 242 26 3 5754 5993 26899190 26899430 3.640000e-72 283.0
25 TraesCS4A01G279000 chr4D 85.417 240 27 5 4670 4905 15152599 15152364 6.180000e-60 243.0
26 TraesCS4A01G279000 chr2A 98.596 1638 19 4 1 1637 196346934 196345300 0.000000e+00 2894.0
27 TraesCS4A01G279000 chr2A 97.924 1638 29 3 1 1637 196328641 196327008 0.000000e+00 2832.0
28 TraesCS4A01G279000 chr2A 97.863 1638 30 4 1 1637 196318044 196316411 0.000000e+00 2826.0
29 TraesCS4A01G279000 chr2A 97.743 1639 32 4 1 1637 196357222 196355587 0.000000e+00 2817.0
30 TraesCS4A01G279000 chr2A 92.907 1847 92 17 458 2288 196118372 196120195 0.000000e+00 2649.0
31 TraesCS4A01G279000 chr2A 97.947 1218 22 3 4 1219 196320999 196319783 0.000000e+00 2108.0
32 TraesCS4A01G279000 chr2A 85.041 1210 137 25 3349 4548 195821290 195822465 0.000000e+00 1192.0
33 TraesCS4A01G279000 chr2A 88.317 1010 82 14 3549 4537 196121697 196122691 0.000000e+00 1179.0
34 TraesCS4A01G279000 chr2A 96.854 604 16 3 1 603 196324808 196324207 0.000000e+00 1007.0
35 TraesCS4A01G279000 chr2A 92.020 589 45 2 2479 3065 195819947 195820535 0.000000e+00 826.0
36 TraesCS4A01G279000 chr2A 89.533 535 51 4 2479 3009 196120459 196120992 0.000000e+00 673.0
37 TraesCS4A01G279000 chr2A 89.583 336 31 4 3203 3538 196121325 196121656 2.060000e-114 424.0
38 TraesCS4A01G279000 chr2A 85.366 287 15 7 5695 5965 196124257 196124532 7.880000e-69 272.0
39 TraesCS4A01G279000 chr2A 90.217 92 7 2 370 459 195817837 195817928 1.090000e-22 119.0
40 TraesCS4A01G279000 chr4B 87.856 2561 179 71 8 2484 24763281 24765793 0.000000e+00 2885.0
41 TraesCS4A01G279000 chr4B 89.770 1349 87 12 4670 5992 24767847 24769170 0.000000e+00 1679.0
42 TraesCS4A01G279000 chr4B 90.221 1268 98 19 3291 4548 24766598 24767849 0.000000e+00 1631.0
43 TraesCS4A01G279000 chr4B 89.167 1320 80 19 4879 6168 25386995 25385709 0.000000e+00 1587.0
44 TraesCS4A01G279000 chr4B 86.327 1236 106 25 3333 4543 25388368 25387171 0.000000e+00 1288.0
45 TraesCS4A01G279000 chr4B 94.163 771 41 3 2479 3247 24765832 24766600 0.000000e+00 1171.0
46 TraesCS4A01G279000 chr4B 86.900 1084 91 18 1442 2491 25393699 25392633 0.000000e+00 1168.0
47 TraesCS4A01G279000 chr4B 92.808 584 39 3 2482 3063 25392598 25392016 0.000000e+00 843.0
48 TraesCS4A01G279000 chr4B 94.853 136 5 2 4545 4679 158279508 158279374 1.740000e-50 211.0
49 TraesCS4A01G279000 chr4B 92.857 140 9 1 4537 4675 325541494 325541355 1.050000e-47 202.0
50 TraesCS4A01G279000 chr4B 91.608 143 10 2 4547 4688 147699029 147699170 4.880000e-46 196.0
51 TraesCS4A01G279000 chr4B 91.538 130 5 4 6044 6168 24769307 24769435 2.290000e-39 174.0
52 TraesCS4A01G279000 chr4B 93.846 65 3 1 5754 5817 39245227 39245291 5.090000e-16 97.1
53 TraesCS4A01G279000 chr3B 91.462 1991 124 26 515 2484 452703578 452701613 0.000000e+00 2693.0
54 TraesCS4A01G279000 chr3B 89.262 1518 102 23 4670 6168 452698554 452697079 0.000000e+00 1844.0
55 TraesCS4A01G279000 chr3B 92.373 1062 62 9 3490 4548 452699597 452698552 0.000000e+00 1495.0
56 TraesCS4A01G279000 chr3B 91.680 637 31 3 2482 3116 452701571 452700955 0.000000e+00 863.0
57 TraesCS4A01G279000 chr1B 86.024 1889 207 35 634 2488 433420333 433422198 0.000000e+00 1973.0
58 TraesCS4A01G279000 chr1B 86.340 1347 140 22 3128 4450 433424228 433425554 0.000000e+00 1428.0
59 TraesCS4A01G279000 chr1B 85.929 931 107 18 4841 5756 433425554 433426475 0.000000e+00 972.0
60 TraesCS4A01G279000 chr1D 85.654 1889 205 33 634 2488 320381939 320383795 0.000000e+00 1927.0
61 TraesCS4A01G279000 chr1D 92.857 140 9 1 4537 4675 162866909 162866770 1.050000e-47 202.0
62 TraesCS4A01G279000 chr5A 86.962 1488 141 31 3086 4542 40874393 40875858 0.000000e+00 1624.0
63 TraesCS4A01G279000 chr5D 86.554 1480 143 25 3086 4542 51842256 51843702 0.000000e+00 1580.0
64 TraesCS4A01G279000 chr5B 85.616 1314 145 21 4683 5959 54827024 54828330 0.000000e+00 1339.0
65 TraesCS4A01G279000 chr5B 87.103 977 94 16 3086 4040 54825434 54826400 0.000000e+00 1077.0
66 TraesCS4A01G279000 chr7D 94.245 139 4 4 4547 4682 266214254 266214391 6.270000e-50 209.0
67 TraesCS4A01G279000 chr2D 95.420 131 5 1 4543 4672 127518531 127518661 2.250000e-49 207.0
68 TraesCS4A01G279000 chr3D 90.728 151 10 4 4538 4685 280387110 280386961 1.360000e-46 198.0
69 TraesCS4A01G279000 chr3D 90.728 151 10 4 4538 4685 365000821 365000970 1.360000e-46 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G279000 chr4A 586673210 586679377 6167 True 11391.000000 11391 100.000000 1 6168 1 chr4A.!!$R4 6167
1 TraesCS4A01G279000 chr4A 456399515 456402970 3455 True 6050.000000 6050 98.239000 2707 6168 1 chr4A.!!$R1 3461
2 TraesCS4A01G279000 chr4A 456413458 456416187 2729 True 4630.000000 4630 97.365000 1 2716 1 chr4A.!!$R2 2715
3 TraesCS4A01G279000 chr4A 538489084 538493405 4321 True 1407.666667 2665 89.794667 458 4537 3 chr4A.!!$R5 4079
4 TraesCS4A01G279000 chr4A 585686913 585691355 4442 False 1342.000000 1964 88.527667 764 4548 3 chr4A.!!$F1 3784
5 TraesCS4A01G279000 chr4A 576605172 576606316 1144 True 773.000000 773 79.412000 4770 5931 1 chr4A.!!$R3 1161
6 TraesCS4A01G279000 chr4A 586088081 586090369 2288 False 617.500000 1083 88.610000 4775 5756 2 chr4A.!!$F2 981
7 TraesCS4A01G279000 chr4D 14923706 14928330 4624 False 1906.000000 3277 88.487667 39 6168 3 chr4D.!!$F2 6129
8 TraesCS4A01G279000 chr4D 14423096 14424392 1296 True 1755.000000 1755 91.424000 956 2230 1 chr4D.!!$R1 1274
9 TraesCS4A01G279000 chr4D 14399471 14403520 4049 True 1058.500000 1842 92.267500 2482 6168 4 chr4D.!!$R2 3686
10 TraesCS4A01G279000 chr4D 15152364 15158813 6449 True 883.400000 1624 87.633800 28 4905 5 chr4D.!!$R3 4877
11 TraesCS4A01G279000 chr2A 196345300 196346934 1634 True 2894.000000 2894 98.596000 1 1637 1 chr2A.!!$R1 1636
12 TraesCS4A01G279000 chr2A 196355587 196357222 1635 True 2817.000000 2817 97.743000 1 1637 1 chr2A.!!$R2 1636
13 TraesCS4A01G279000 chr2A 196316411 196328641 12230 True 2193.250000 2832 97.647000 1 1637 4 chr2A.!!$R3 1636
14 TraesCS4A01G279000 chr2A 196118372 196124532 6160 False 1039.400000 2649 89.141200 458 5965 5 chr2A.!!$F2 5507
15 TraesCS4A01G279000 chr2A 195817837 195822465 4628 False 712.333333 1192 89.092667 370 4548 3 chr2A.!!$F1 4178
16 TraesCS4A01G279000 chr4B 24763281 24769435 6154 False 1508.000000 2885 90.709600 8 6168 5 chr4B.!!$F3 6160
17 TraesCS4A01G279000 chr4B 25385709 25393699 7990 True 1221.500000 1587 88.800500 1442 6168 4 chr4B.!!$R3 4726
18 TraesCS4A01G279000 chr3B 452697079 452703578 6499 True 1723.750000 2693 91.194250 515 6168 4 chr3B.!!$R1 5653
19 TraesCS4A01G279000 chr1B 433420333 433426475 6142 False 1457.666667 1973 86.097667 634 5756 3 chr1B.!!$F1 5122
20 TraesCS4A01G279000 chr1D 320381939 320383795 1856 False 1927.000000 1927 85.654000 634 2488 1 chr1D.!!$F1 1854
21 TraesCS4A01G279000 chr5A 40874393 40875858 1465 False 1624.000000 1624 86.962000 3086 4542 1 chr5A.!!$F1 1456
22 TraesCS4A01G279000 chr5D 51842256 51843702 1446 False 1580.000000 1580 86.554000 3086 4542 1 chr5D.!!$F1 1456
23 TraesCS4A01G279000 chr5B 54825434 54828330 2896 False 1208.000000 1339 86.359500 3086 5959 2 chr5B.!!$F1 2873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 106 3.532641 AAAAGCTCTTCCATTCCCAGT 57.467 42.857 0.0 0.0 0.0 4.00 F
1590 12457 1.064952 ACCAACTTGCTTGCGTTACAC 59.935 47.619 0.0 0.0 0.0 2.90 F
2250 13175 3.134081 TCACTTCCCTCCCAATACGAATC 59.866 47.826 0.0 0.0 0.0 2.52 F
3924 21252 2.685897 TGGTTTTGTCACTGCCTTGTAC 59.314 45.455 0.0 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 12915 0.038709 GCACCATGGCGTAAAAGCAA 60.039 50.000 13.04 0.00 39.27 3.91 R
3483 20709 4.412199 TGGATAGCTAATAACAGGCTGGTT 59.588 41.667 20.34 12.77 37.50 3.67 R
4041 21379 5.195185 TGCTCATTTCTGCCAATTCATCTA 58.805 37.500 0.00 0.00 0.00 1.98 R
5406 24502 3.002791 CTGCCACAGTATCATTCGTTGT 58.997 45.455 0.00 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 106 3.532641 AAAAGCTCTTCCATTCCCAGT 57.467 42.857 0.00 0.00 0.00 4.00
254 7929 9.803315 GTCTGATCTGTTATGTATGTGTTTCTA 57.197 33.333 0.00 0.00 0.00 2.10
1151 11960 4.789012 TCACTGAGGATTTTGATTTGGC 57.211 40.909 0.00 0.00 0.00 4.52
1590 12457 1.064952 ACCAACTTGCTTGCGTTACAC 59.935 47.619 0.00 0.00 0.00 2.90
1652 12543 5.815222 ACCAAAAGACAGTTTATTTTGTGGC 59.185 36.000 7.99 0.00 40.59 5.01
1699 12591 6.105333 CCTTTCACCTTTTTCAATTGTGACA 58.895 36.000 5.13 0.00 35.82 3.58
2158 13080 6.881602 GGACAATCTGGAGTACAATCTTTCTT 59.118 38.462 0.00 0.00 0.00 2.52
2250 13175 3.134081 TCACTTCCCTCCCAATACGAATC 59.866 47.826 0.00 0.00 0.00 2.52
2340 13296 9.661563 AATGAAATTAGTGATACAAAGTACCGA 57.338 29.630 0.00 0.00 32.46 4.69
2640 13699 8.306038 TGCTTGCAGAGAAAACAAATAATGTAT 58.694 29.630 0.00 0.00 42.99 2.29
2778 13837 6.816136 AGTAAGAAAAATGGGTTTGACCTTG 58.184 36.000 0.00 0.00 38.64 3.61
3500 20727 4.783764 AACAAACCAGCCTGTTATTAGC 57.216 40.909 0.00 0.00 34.04 3.09
3624 20926 6.591834 TGCTTTATCTTCTAAGACAGTGCTTC 59.408 38.462 3.52 0.00 37.98 3.86
3924 21252 2.685897 TGGTTTTGTCACTGCCTTGTAC 59.314 45.455 0.00 0.00 0.00 2.90
3928 21256 4.409718 TTTGTCACTGCCTTGTACTGTA 57.590 40.909 0.00 0.00 0.00 2.74
3929 21257 4.617253 TTGTCACTGCCTTGTACTGTAT 57.383 40.909 0.00 0.00 0.00 2.29
3930 21258 4.188247 TGTCACTGCCTTGTACTGTATC 57.812 45.455 0.00 0.00 0.00 2.24
3931 21259 3.576550 TGTCACTGCCTTGTACTGTATCA 59.423 43.478 0.00 0.00 0.00 2.15
4041 21379 8.149647 TCTTTGTTTATTTTCTGGATGCATGTT 58.850 29.630 2.46 0.00 0.00 2.71
4150 21640 3.908103 GGAGCTGGGGTATATTAAGGTCA 59.092 47.826 0.00 0.00 37.17 4.02
4560 22123 0.335361 ACATGTACTCCCTCCGTCCT 59.665 55.000 0.00 0.00 0.00 3.85
4663 22226 8.579863 CAAATCTAAGACAAGAATTTTGGGACT 58.420 33.333 5.68 0.00 28.49 3.85
4865 22660 3.297134 TGCAGTTTTCTCCTCCAAACT 57.703 42.857 0.00 0.00 42.73 2.66
5081 24169 4.082895 ACGCTGTAAACCTGTACTACTCTG 60.083 45.833 0.00 0.00 0.00 3.35
5406 24502 5.497464 TTGGATAGACTGATGGTGTTCAA 57.503 39.130 0.00 0.00 0.00 2.69
5993 25493 8.771920 TTTCACACACATGTATAGAAACTAGG 57.228 34.615 0.00 0.00 36.72 3.02
5994 25494 7.712204 TCACACACATGTATAGAAACTAGGA 57.288 36.000 0.00 0.00 36.72 2.94
5995 25495 7.772166 TCACACACATGTATAGAAACTAGGAG 58.228 38.462 0.00 0.00 36.72 3.69
5996 25496 7.396339 TCACACACATGTATAGAAACTAGGAGT 59.604 37.037 0.00 0.00 36.72 3.85
5997 25497 8.683615 CACACACATGTATAGAAACTAGGAGTA 58.316 37.037 0.00 0.00 36.72 2.59
5998 25498 8.684520 ACACACATGTATAGAAACTAGGAGTAC 58.315 37.037 0.00 0.00 37.26 2.73
5999 25499 8.683615 CACACATGTATAGAAACTAGGAGTACA 58.316 37.037 0.00 0.00 0.00 2.90
6000 25500 9.422681 ACACATGTATAGAAACTAGGAGTACAT 57.577 33.333 0.00 0.00 33.08 2.29
6001 25501 9.684448 CACATGTATAGAAACTAGGAGTACATG 57.316 37.037 19.70 19.70 46.51 3.21
6003 25503 9.684448 CATGTATAGAAACTAGGAGTACATGTG 57.316 37.037 9.11 0.00 41.02 3.21
6004 25504 8.818622 TGTATAGAAACTAGGAGTACATGTGT 57.181 34.615 9.11 0.00 0.00 3.72
6005 25505 9.910267 TGTATAGAAACTAGGAGTACATGTGTA 57.090 33.333 9.11 0.00 0.00 2.90
6008 25508 9.696572 ATAGAAACTAGGAGTACATGTGTAGAA 57.303 33.333 9.11 0.00 0.00 2.10
6009 25509 7.828712 AGAAACTAGGAGTACATGTGTAGAAC 58.171 38.462 9.11 0.00 0.00 3.01
6010 25510 7.670559 AGAAACTAGGAGTACATGTGTAGAACT 59.329 37.037 9.11 2.84 0.00 3.01
6011 25511 8.874744 AAACTAGGAGTACATGTGTAGAACTA 57.125 34.615 9.11 3.03 0.00 2.24
6109 25721 5.594317 GCATCCTAATGTGTTTCCCATTAGT 59.406 40.000 15.27 0.57 45.27 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 106 0.170339 CGGCACACTGTATCTGACGA 59.830 55.000 2.30 0.00 0.00 4.20
183 4025 3.015312 GCGGGAAGAGCGGTACCTT 62.015 63.158 10.90 0.00 0.00 3.50
254 7929 0.523072 GCAAGATTCGGCACACACAT 59.477 50.000 0.00 0.00 0.00 3.21
610 8432 3.631686 TCCCATGAATAACTGAATTGCCG 59.368 43.478 0.00 0.00 0.00 5.69
1151 11960 6.653989 AGTTATCATACCTCCTCAACCTTTG 58.346 40.000 0.00 0.00 0.00 2.77
1227 12050 3.932089 GCTGAAAGAGAGAATGTCAGGAC 59.068 47.826 0.00 0.00 36.93 3.85
1590 12457 5.921429 ACAACAATTGAAACAACAAAACCG 58.079 33.333 13.59 0.00 33.44 4.44
1652 12543 5.077424 GCGTCAGTTATCCAACTAAAAACG 58.923 41.667 0.00 0.00 43.30 3.60
1699 12591 1.362932 ACCCACCCACTAGATGAGTCT 59.637 52.381 0.00 0.00 35.64 3.24
2017 12915 0.038709 GCACCATGGCGTAAAAGCAA 60.039 50.000 13.04 0.00 39.27 3.91
2250 13175 2.224079 ACGTCATGCTGCAAAAGTAGTG 59.776 45.455 6.36 0.00 0.00 2.74
2340 13296 4.712476 ACAAGTTGAGATGAAAGAGTGCT 58.288 39.130 10.54 0.00 0.00 4.40
2640 13699 6.579666 AATGTAATTGCAGAGCTCTTGAAA 57.420 33.333 15.27 11.05 33.44 2.69
2778 13837 7.764443 TGAAAGCCTCATTATACAGTTACTGAC 59.236 37.037 20.07 0.00 35.18 3.51
3226 20369 6.012745 AGTAGCATCTTGGGTTTGAGATTTT 58.987 36.000 0.00 0.00 30.43 1.82
3227 20370 5.574188 AGTAGCATCTTGGGTTTGAGATTT 58.426 37.500 0.00 0.00 30.43 2.17
3483 20709 4.412199 TGGATAGCTAATAACAGGCTGGTT 59.588 41.667 20.34 12.77 37.50 3.67
3854 21158 9.499479 AAGAAAATATACTATGCTCATGTCAGG 57.501 33.333 0.00 0.00 0.00 3.86
3924 21252 7.677454 TGATATGGCTGCTAAAATGATACAG 57.323 36.000 0.00 0.00 0.00 2.74
3928 21256 6.964807 TGTTGATATGGCTGCTAAAATGAT 57.035 33.333 0.00 0.00 0.00 2.45
3929 21257 6.546772 TGATGTTGATATGGCTGCTAAAATGA 59.453 34.615 0.00 0.00 0.00 2.57
3930 21258 6.741109 TGATGTTGATATGGCTGCTAAAATG 58.259 36.000 0.00 0.00 0.00 2.32
3931 21259 6.964807 TGATGTTGATATGGCTGCTAAAAT 57.035 33.333 0.00 0.00 0.00 1.82
3991 21328 7.661437 AGAGAAATAACACAAGCACATGTTCTA 59.339 33.333 0.00 0.00 39.67 2.10
4041 21379 5.195185 TGCTCATTTCTGCCAATTCATCTA 58.805 37.500 0.00 0.00 0.00 1.98
4150 21640 5.759059 TGAATAAGGAAGGCTCATGTCAAT 58.241 37.500 0.00 0.00 0.00 2.57
4663 22226 8.890410 AGTTCTGTGTATTTAACTACTCCCTA 57.110 34.615 4.80 0.00 30.62 3.53
4766 22550 7.446931 TCAATTCACTAGGTTTTATGAACTGCA 59.553 33.333 0.00 0.00 34.08 4.41
4767 22551 7.816640 TCAATTCACTAGGTTTTATGAACTGC 58.183 34.615 0.00 0.00 34.08 4.40
4865 22660 4.060900 GCAGCGAGATGATGGAAAGAATA 58.939 43.478 0.00 0.00 33.55 1.75
5081 24169 9.840427 AGTAAATTATTGTGTGAAGCAATACAC 57.160 29.630 9.56 9.56 45.57 2.90
5157 24248 3.941483 GCAGTCATAAGGCTAGCTTCAAA 59.059 43.478 15.72 0.00 0.00 2.69
5406 24502 3.002791 CTGCCACAGTATCATTCGTTGT 58.997 45.455 0.00 0.00 0.00 3.32
5994 25494 9.804758 GCTAGAATTTAGTTCTACACATGTACT 57.195 33.333 0.00 0.02 45.28 2.73
5995 25495 9.804758 AGCTAGAATTTAGTTCTACACATGTAC 57.195 33.333 0.00 0.00 45.28 2.90
5997 25497 9.726438 AAAGCTAGAATTTAGTTCTACACATGT 57.274 29.630 0.00 0.00 45.28 3.21
5998 25498 9.979270 CAAAGCTAGAATTTAGTTCTACACATG 57.021 33.333 0.00 0.00 45.28 3.21
5999 25499 9.944376 TCAAAGCTAGAATTTAGTTCTACACAT 57.056 29.630 0.00 0.00 45.28 3.21
6000 25500 9.424319 CTCAAAGCTAGAATTTAGTTCTACACA 57.576 33.333 0.00 0.00 45.28 3.72
6001 25501 9.425577 ACTCAAAGCTAGAATTTAGTTCTACAC 57.574 33.333 0.00 0.00 45.28 2.90
6002 25502 9.998106 AACTCAAAGCTAGAATTTAGTTCTACA 57.002 29.630 0.00 0.00 45.28 2.74
6004 25504 9.436957 CCAACTCAAAGCTAGAATTTAGTTCTA 57.563 33.333 0.00 0.00 45.28 2.10
6006 25506 7.024171 GCCAACTCAAAGCTAGAATTTAGTTC 58.976 38.462 0.00 0.00 37.08 3.01
6007 25507 6.717084 AGCCAACTCAAAGCTAGAATTTAGTT 59.283 34.615 0.00 0.00 34.38 2.24
6008 25508 6.241645 AGCCAACTCAAAGCTAGAATTTAGT 58.758 36.000 0.00 0.00 34.38 2.24
6009 25509 6.183360 GGAGCCAACTCAAAGCTAGAATTTAG 60.183 42.308 0.00 0.00 45.42 1.85
6010 25510 5.648092 GGAGCCAACTCAAAGCTAGAATTTA 59.352 40.000 0.00 0.00 45.42 1.40
6011 25511 4.460731 GGAGCCAACTCAAAGCTAGAATTT 59.539 41.667 0.00 0.00 45.42 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.