Multiple sequence alignment - TraesCS4A01G278000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G278000 chr4A 100.000 2333 0 0 1 2333 585555795 585558127 0.000000e+00 4309.0
1 TraesCS4A01G278000 chr4A 87.302 126 15 1 689 814 710210110 710209986 2.420000e-30 143.0
2 TraesCS4A01G278000 chr2A 97.471 1661 26 2 689 2333 195711581 195709921 0.000000e+00 2820.0
3 TraesCS4A01G278000 chr2A 89.474 266 17 6 930 1191 337889494 337889752 2.240000e-85 326.0
4 TraesCS4A01G278000 chr2A 83.265 245 33 4 689 933 337889196 337889432 3.900000e-53 219.0
5 TraesCS4A01G278000 chr2A 82.857 245 34 4 689 933 337772188 337772424 1.820000e-51 213.0
6 TraesCS4A01G278000 chr2A 83.663 202 26 5 201 396 8330771 8330971 1.420000e-42 183.0
7 TraesCS4A01G278000 chr2A 92.079 101 2 3 485 583 195711662 195711566 1.120000e-28 137.0
8 TraesCS4A01G278000 chr2A 88.393 112 13 0 576 687 21280168 21280279 4.040000e-28 135.0
9 TraesCS4A01G278000 chr2A 87.629 97 7 4 489 583 337889118 337889211 8.820000e-20 108.0
10 TraesCS4A01G278000 chr2A 86.598 97 8 4 489 583 337772110 337772203 4.100000e-18 102.0
11 TraesCS4A01G278000 chr7A 87.112 1451 101 40 933 2332 318754996 318753581 0.000000e+00 1565.0
12 TraesCS4A01G278000 chr7A 87.050 1390 95 36 993 2332 31088256 31086902 0.000000e+00 1491.0
13 TraesCS4A01G278000 chr7A 92.035 113 8 1 576 687 679147418 679147306 8.630000e-35 158.0
14 TraesCS4A01G278000 chr7A 87.500 112 14 0 576 687 670509480 670509369 1.880000e-26 130.0
15 TraesCS4A01G278000 chr7A 94.286 70 4 0 25 94 570709569 570709638 8.820000e-20 108.0
16 TraesCS4A01G278000 chr3A 88.258 792 44 18 930 1688 28399093 28399868 0.000000e+00 902.0
17 TraesCS4A01G278000 chr3A 91.049 648 39 8 1697 2332 28399916 28400556 0.000000e+00 857.0
18 TraesCS4A01G278000 chr3A 90.594 202 13 1 201 396 609957999 609958200 1.780000e-66 263.0
19 TraesCS4A01G278000 chr3A 82.041 245 24 4 689 933 28398807 28399031 8.510000e-45 191.0
20 TraesCS4A01G278000 chr3A 90.265 113 9 2 576 687 673722978 673723089 1.870000e-31 147.0
21 TraesCS4A01G278000 chr3A 90.265 113 10 1 576 687 724577327 724577215 1.870000e-31 147.0
22 TraesCS4A01G278000 chr3A 95.714 70 3 0 25 94 65834416 65834485 1.890000e-21 113.0
23 TraesCS4A01G278000 chr2B 82.620 1122 89 37 1290 2333 37298035 37299128 0.000000e+00 894.0
24 TraesCS4A01G278000 chr2B 88.608 316 25 7 932 1243 37297729 37298037 7.870000e-100 374.0
25 TraesCS4A01G278000 chr2B 84.925 199 23 3 201 393 12191451 12191648 6.580000e-46 195.0
26 TraesCS4A01G278000 chr2B 84.925 199 23 3 201 393 12205406 12205603 6.580000e-46 195.0
27 TraesCS4A01G278000 chr2B 84.694 196 24 6 201 392 84086029 84085836 8.510000e-45 191.0
28 TraesCS4A01G278000 chr2B 87.500 168 14 2 766 933 37297498 37297658 1.100000e-43 187.0
29 TraesCS4A01G278000 chr2B 87.395 119 11 4 576 690 517753894 517753776 1.450000e-27 134.0
30 TraesCS4A01G278000 chr5B 89.231 715 46 14 930 1629 650991160 650990462 0.000000e+00 865.0
31 TraesCS4A01G278000 chr5B 90.364 467 31 6 1873 2333 650990066 650989608 3.320000e-168 601.0
32 TraesCS4A01G278000 chr5B 82.972 323 37 8 2022 2331 610891235 610891552 2.280000e-70 276.0
33 TraesCS4A01G278000 chr5B 84.836 244 30 3 690 933 650991455 650991219 3.000000e-59 239.0
34 TraesCS4A01G278000 chr5B 88.679 159 15 2 1698 1856 650990349 650990194 8.510000e-45 191.0
35 TraesCS4A01G278000 chr5B 88.000 100 12 0 706 805 610890493 610890592 4.070000e-23 119.0
36 TraesCS4A01G278000 chr5B 95.588 68 2 1 981 1047 610890590 610890657 8.820000e-20 108.0
37 TraesCS4A01G278000 chrUn 84.761 899 64 33 1484 2332 234878976 234879851 0.000000e+00 833.0
38 TraesCS4A01G278000 chrUn 84.761 899 64 33 1484 2332 234888939 234889814 0.000000e+00 833.0
39 TraesCS4A01G278000 chrUn 84.925 199 23 3 201 393 375161127 375161324 6.580000e-46 195.0
40 TraesCS4A01G278000 chrUn 87.611 113 13 1 576 687 50893870 50893758 1.880000e-26 130.0
41 TraesCS4A01G278000 chrUn 95.588 68 3 0 930 997 234887361 234887428 2.450000e-20 110.0
42 TraesCS4A01G278000 chrUn 95.588 68 3 0 933 1000 357463220 357463153 2.450000e-20 110.0
43 TraesCS4A01G278000 chrUn 95.588 68 3 0 933 1000 357465357 357465290 2.450000e-20 110.0
44 TraesCS4A01G278000 chrUn 88.372 86 3 2 993 1078 234888522 234888600 1.910000e-16 97.1
45 TraesCS4A01G278000 chr4B 90.123 648 41 10 1698 2333 632399676 632400312 0.000000e+00 821.0
46 TraesCS4A01G278000 chr4B 89.201 463 34 9 1180 1629 632399097 632399556 4.350000e-157 564.0
47 TraesCS4A01G278000 chr4B 87.283 173 14 2 930 1102 632398937 632399101 8.510000e-45 191.0
48 TraesCS4A01G278000 chr6D 87.166 374 31 5 930 1303 463979233 463979589 2.160000e-110 409.0
49 TraesCS4A01G278000 chr6D 81.200 250 34 8 689 933 463978931 463979172 3.060000e-44 189.0
50 TraesCS4A01G278000 chr7B 89.172 314 24 5 932 1242 581404993 581405299 1.310000e-102 383.0
51 TraesCS4A01G278000 chr7B 89.744 195 19 1 202 395 527044785 527044591 4.980000e-62 248.0
52 TraesCS4A01G278000 chr7B 87.817 197 18 5 201 395 82447362 82447170 2.330000e-55 226.0
53 TraesCS4A01G278000 chr7B 83.673 245 32 4 689 933 31999838 31999602 8.390000e-55 224.0
54 TraesCS4A01G278000 chr7B 87.500 96 7 4 490 583 31999915 31999823 3.170000e-19 106.0
55 TraesCS4A01G278000 chr6A 88.776 196 17 3 201 396 603430825 603430635 3.880000e-58 235.0
56 TraesCS4A01G278000 chr1A 88.079 151 16 2 1387 1536 335043589 335043440 6.620000e-41 178.0
57 TraesCS4A01G278000 chr1A 86.508 126 17 0 689 814 335044962 335044837 3.130000e-29 139.0
58 TraesCS4A01G278000 chr1A 98.667 75 0 1 95 168 573315719 573315793 5.230000e-27 132.0
59 TraesCS4A01G278000 chr1A 95.652 69 3 0 26 94 17560732 17560664 6.810000e-21 111.0
60 TraesCS4A01G278000 chr5A 90.991 111 9 1 576 685 608872791 608872681 5.190000e-32 148.0
61 TraesCS4A01G278000 chr5A 95.714 70 3 0 25 94 75909656 75909587 1.890000e-21 113.0
62 TraesCS4A01G278000 chr5A 95.714 70 3 0 25 94 179368847 179368916 1.890000e-21 113.0
63 TraesCS4A01G278000 chr5A 94.286 70 4 0 25 94 516712783 516712852 8.820000e-20 108.0
64 TraesCS4A01G278000 chr5A 94.286 70 4 0 25 94 637136086 637136155 8.820000e-20 108.0
65 TraesCS4A01G278000 chr1B 90.991 111 9 1 576 685 13166495 13166605 5.190000e-32 148.0
66 TraesCS4A01G278000 chr1B 95.714 70 3 0 25 94 686400890 686400959 1.890000e-21 113.0
67 TraesCS4A01G278000 chr1B 95.714 70 3 0 25 94 686427361 686427430 1.890000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G278000 chr4A 585555795 585558127 2332 False 4309.000000 4309 100.000000 1 2333 1 chr4A.!!$F1 2332
1 TraesCS4A01G278000 chr2A 195709921 195711662 1741 True 1478.500000 2820 94.775000 485 2333 2 chr2A.!!$R1 1848
2 TraesCS4A01G278000 chr2A 337889118 337889752 634 False 217.666667 326 86.789333 489 1191 3 chr2A.!!$F4 702
3 TraesCS4A01G278000 chr7A 318753581 318754996 1415 True 1565.000000 1565 87.112000 933 2332 1 chr7A.!!$R2 1399
4 TraesCS4A01G278000 chr7A 31086902 31088256 1354 True 1491.000000 1491 87.050000 993 2332 1 chr7A.!!$R1 1339
5 TraesCS4A01G278000 chr3A 28398807 28400556 1749 False 650.000000 902 87.116000 689 2332 3 chr3A.!!$F4 1643
6 TraesCS4A01G278000 chr2B 37297498 37299128 1630 False 485.000000 894 86.242667 766 2333 3 chr2B.!!$F3 1567
7 TraesCS4A01G278000 chr5B 650989608 650991455 1847 True 474.000000 865 88.277500 690 2333 4 chr5B.!!$R1 1643
8 TraesCS4A01G278000 chrUn 234878976 234879851 875 False 833.000000 833 84.761000 1484 2332 1 chrUn.!!$F1 848
9 TraesCS4A01G278000 chrUn 234887361 234889814 2453 False 346.700000 833 89.573667 930 2332 3 chrUn.!!$F3 1402
10 TraesCS4A01G278000 chr4B 632398937 632400312 1375 False 525.333333 821 88.869000 930 2333 3 chr4B.!!$F1 1403
11 TraesCS4A01G278000 chr6D 463978931 463979589 658 False 299.000000 409 84.183000 689 1303 2 chr6D.!!$F1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.034863 GCCCAGGTGAACCGGAATTA 60.035 55.0 9.46 0.0 42.08 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1631 2868 1.13467 GGCATGGAGTGGTCAGAGTAC 60.135 57.143 0.0 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.162592 TCAATGGGCATCGCATCC 57.837 55.556 0.00 0.00 36.01 3.51
18 19 1.533219 TCAATGGGCATCGCATCCT 59.467 52.632 0.00 0.00 36.01 3.24
19 20 0.106569 TCAATGGGCATCGCATCCTT 60.107 50.000 0.00 0.00 36.01 3.36
20 21 0.748450 CAATGGGCATCGCATCCTTT 59.252 50.000 0.00 0.00 36.01 3.11
21 22 1.955778 CAATGGGCATCGCATCCTTTA 59.044 47.619 0.00 0.00 36.01 1.85
22 23 1.901591 ATGGGCATCGCATCCTTTAG 58.098 50.000 0.00 0.00 31.37 1.85
23 24 0.546122 TGGGCATCGCATCCTTTAGT 59.454 50.000 0.00 0.00 0.00 2.24
24 25 1.765904 TGGGCATCGCATCCTTTAGTA 59.234 47.619 0.00 0.00 0.00 1.82
25 26 2.143925 GGGCATCGCATCCTTTAGTAC 58.856 52.381 0.00 0.00 0.00 2.73
26 27 2.224305 GGGCATCGCATCCTTTAGTACT 60.224 50.000 0.00 0.00 0.00 2.73
27 28 3.006537 GGGCATCGCATCCTTTAGTACTA 59.993 47.826 0.00 0.00 0.00 1.82
28 29 4.502604 GGGCATCGCATCCTTTAGTACTAA 60.503 45.833 11.38 11.38 0.00 2.24
29 30 5.054477 GGCATCGCATCCTTTAGTACTAAA 58.946 41.667 23.31 23.31 34.28 1.85
38 39 4.152284 CTTTAGTACTAAAGGGCCCAGG 57.848 50.000 33.83 16.28 44.96 4.45
39 40 2.955200 TAGTACTAAAGGGCCCAGGT 57.045 50.000 27.56 18.28 0.00 4.00
40 41 1.286248 AGTACTAAAGGGCCCAGGTG 58.714 55.000 27.56 13.92 0.00 4.00
41 42 1.203389 AGTACTAAAGGGCCCAGGTGA 60.203 52.381 27.56 0.00 0.00 4.02
42 43 1.631898 GTACTAAAGGGCCCAGGTGAA 59.368 52.381 27.56 1.43 0.00 3.18
43 44 0.404426 ACTAAAGGGCCCAGGTGAAC 59.596 55.000 27.56 0.00 0.00 3.18
44 45 0.323451 CTAAAGGGCCCAGGTGAACC 60.323 60.000 27.56 0.00 0.00 3.62
45 46 2.132089 TAAAGGGCCCAGGTGAACCG 62.132 60.000 27.56 0.00 42.08 4.44
48 49 3.961414 GGCCCAGGTGAACCGGAA 61.961 66.667 9.46 0.00 42.08 4.30
49 50 2.355115 GCCCAGGTGAACCGGAAT 59.645 61.111 9.46 0.00 42.08 3.01
50 51 1.304134 GCCCAGGTGAACCGGAATT 60.304 57.895 9.46 0.00 42.08 2.17
51 52 0.034863 GCCCAGGTGAACCGGAATTA 60.035 55.000 9.46 0.00 42.08 1.40
52 53 1.614850 GCCCAGGTGAACCGGAATTAA 60.615 52.381 9.46 0.00 42.08 1.40
53 54 2.948600 GCCCAGGTGAACCGGAATTAAT 60.949 50.000 9.46 0.00 42.08 1.40
54 55 2.687935 CCCAGGTGAACCGGAATTAATG 59.312 50.000 9.46 0.00 42.08 1.90
55 56 3.352648 CCAGGTGAACCGGAATTAATGT 58.647 45.455 9.46 0.00 42.08 2.71
56 57 3.377172 CCAGGTGAACCGGAATTAATGTC 59.623 47.826 9.46 0.00 42.08 3.06
57 58 4.261801 CAGGTGAACCGGAATTAATGTCT 58.738 43.478 9.46 0.00 42.08 3.41
58 59 4.700213 CAGGTGAACCGGAATTAATGTCTT 59.300 41.667 9.46 0.00 42.08 3.01
59 60 5.878116 CAGGTGAACCGGAATTAATGTCTTA 59.122 40.000 9.46 0.00 42.08 2.10
60 61 6.037172 CAGGTGAACCGGAATTAATGTCTTAG 59.963 42.308 9.46 0.00 42.08 2.18
61 62 5.220796 GGTGAACCGGAATTAATGTCTTAGC 60.221 44.000 9.46 0.00 0.00 3.09
62 63 4.879545 TGAACCGGAATTAATGTCTTAGCC 59.120 41.667 9.46 0.00 0.00 3.93
63 64 3.463944 ACCGGAATTAATGTCTTAGCCG 58.536 45.455 9.46 0.00 37.41 5.52
64 65 2.223377 CCGGAATTAATGTCTTAGCCGC 59.777 50.000 0.00 0.00 36.42 6.53
65 66 2.869801 CGGAATTAATGTCTTAGCCGCA 59.130 45.455 0.00 0.00 0.00 5.69
66 67 3.498397 CGGAATTAATGTCTTAGCCGCAT 59.502 43.478 0.00 0.00 0.00 4.73
67 68 4.611355 CGGAATTAATGTCTTAGCCGCATG 60.611 45.833 0.00 0.00 0.00 4.06
68 69 4.515191 GGAATTAATGTCTTAGCCGCATGA 59.485 41.667 0.00 0.00 0.00 3.07
69 70 5.008613 GGAATTAATGTCTTAGCCGCATGAA 59.991 40.000 0.00 0.00 0.00 2.57
70 71 4.875544 TTAATGTCTTAGCCGCATGAAC 57.124 40.909 0.00 0.00 0.00 3.18
71 72 1.668419 ATGTCTTAGCCGCATGAACC 58.332 50.000 0.00 0.00 0.00 3.62
72 73 0.739462 TGTCTTAGCCGCATGAACCG 60.739 55.000 0.00 0.00 0.00 4.44
74 75 2.124901 TTAGCCGCATGAACCGGG 60.125 61.111 6.32 0.00 45.66 5.73
75 76 2.587322 CTTAGCCGCATGAACCGGGA 62.587 60.000 6.32 0.00 45.66 5.14
76 77 1.978455 TTAGCCGCATGAACCGGGAT 61.978 55.000 6.32 0.00 45.66 3.85
77 78 1.116536 TAGCCGCATGAACCGGGATA 61.117 55.000 6.32 0.00 45.66 2.59
78 79 1.525077 GCCGCATGAACCGGGATAA 60.525 57.895 6.32 0.00 45.66 1.75
79 80 1.098712 GCCGCATGAACCGGGATAAA 61.099 55.000 6.32 0.00 45.66 1.40
80 81 1.604604 CCGCATGAACCGGGATAAAT 58.395 50.000 6.32 0.00 41.99 1.40
81 82 1.266718 CCGCATGAACCGGGATAAATG 59.733 52.381 6.32 3.41 41.99 2.32
82 83 1.334960 CGCATGAACCGGGATAAATGC 60.335 52.381 6.32 12.59 37.61 3.56
83 84 1.680735 GCATGAACCGGGATAAATGCA 59.319 47.619 18.88 0.00 40.05 3.96
84 85 2.543653 GCATGAACCGGGATAAATGCAC 60.544 50.000 18.88 0.00 40.05 4.57
85 86 1.757682 TGAACCGGGATAAATGCACC 58.242 50.000 6.32 0.00 0.00 5.01
86 87 1.029681 GAACCGGGATAAATGCACCC 58.970 55.000 6.32 0.00 40.17 4.61
87 88 0.333312 AACCGGGATAAATGCACCCA 59.667 50.000 6.32 0.00 43.40 4.51
88 89 0.555769 ACCGGGATAAATGCACCCAT 59.444 50.000 6.32 0.00 43.40 4.00
89 90 1.063266 ACCGGGATAAATGCACCCATT 60.063 47.619 6.32 0.00 43.32 3.16
90 91 1.340889 CCGGGATAAATGCACCCATTG 59.659 52.381 9.80 0.00 40.69 2.82
91 92 1.340889 CGGGATAAATGCACCCATTGG 59.659 52.381 9.80 0.00 40.69 3.16
93 94 2.365293 GGGATAAATGCACCCATTGGTC 59.635 50.000 4.47 0.00 45.57 4.02
94 95 3.030291 GGATAAATGCACCCATTGGTCA 58.970 45.455 1.20 0.00 45.57 4.02
95 96 3.450457 GGATAAATGCACCCATTGGTCAA 59.550 43.478 1.20 0.00 45.57 3.18
96 97 4.081198 GGATAAATGCACCCATTGGTCAAA 60.081 41.667 1.20 0.00 45.57 2.69
97 98 3.853355 AAATGCACCCATTGGTCAAAA 57.147 38.095 1.20 0.00 45.57 2.44
98 99 3.853355 AATGCACCCATTGGTCAAAAA 57.147 38.095 1.20 0.00 45.57 1.94
99 100 4.370094 AATGCACCCATTGGTCAAAAAT 57.630 36.364 1.20 0.00 45.57 1.82
100 101 3.399440 TGCACCCATTGGTCAAAAATC 57.601 42.857 1.20 0.00 45.57 2.17
101 102 2.702478 TGCACCCATTGGTCAAAAATCA 59.298 40.909 1.20 0.00 45.57 2.57
102 103 3.066380 GCACCCATTGGTCAAAAATCAC 58.934 45.455 1.20 0.00 45.57 3.06
103 104 3.244181 GCACCCATTGGTCAAAAATCACT 60.244 43.478 1.20 0.00 45.57 3.41
104 105 4.309099 CACCCATTGGTCAAAAATCACTG 58.691 43.478 1.20 0.00 45.57 3.66
105 106 4.039004 CACCCATTGGTCAAAAATCACTGA 59.961 41.667 1.20 0.00 45.57 3.41
106 107 4.840115 ACCCATTGGTCAAAAATCACTGAT 59.160 37.500 1.20 0.00 43.06 2.90
107 108 5.172934 CCCATTGGTCAAAAATCACTGATG 58.827 41.667 1.20 0.00 0.00 3.07
108 109 5.279607 CCCATTGGTCAAAAATCACTGATGT 60.280 40.000 1.20 0.00 0.00 3.06
109 110 6.071447 CCCATTGGTCAAAAATCACTGATGTA 60.071 38.462 1.20 0.00 0.00 2.29
110 111 7.377398 CCATTGGTCAAAAATCACTGATGTAA 58.623 34.615 0.00 0.00 0.00 2.41
111 112 8.036575 CCATTGGTCAAAAATCACTGATGTAAT 58.963 33.333 0.00 0.00 0.00 1.89
112 113 8.865978 CATTGGTCAAAAATCACTGATGTAATG 58.134 33.333 0.00 0.00 0.00 1.90
113 114 7.757941 TGGTCAAAAATCACTGATGTAATGA 57.242 32.000 0.00 0.00 0.00 2.57
114 115 7.819644 TGGTCAAAAATCACTGATGTAATGAG 58.180 34.615 0.00 0.00 32.05 2.90
115 116 7.448161 TGGTCAAAAATCACTGATGTAATGAGT 59.552 33.333 0.00 0.00 43.28 3.41
116 117 8.946085 GGTCAAAAATCACTGATGTAATGAGTA 58.054 33.333 0.00 0.00 39.33 2.59
131 132 8.378172 TGTAATGAGTATATTAGCTTGTTGGC 57.622 34.615 0.00 0.00 0.00 4.52
132 133 6.884280 AATGAGTATATTAGCTTGTTGGCC 57.116 37.500 0.00 0.00 0.00 5.36
133 134 4.714632 TGAGTATATTAGCTTGTTGGCCC 58.285 43.478 0.00 0.00 0.00 5.80
134 135 3.740115 AGTATATTAGCTTGTTGGCCCG 58.260 45.455 0.00 0.00 0.00 6.13
135 136 1.981256 ATATTAGCTTGTTGGCCCGG 58.019 50.000 0.00 0.00 0.00 5.73
136 137 0.106918 TATTAGCTTGTTGGCCCGGG 60.107 55.000 19.09 19.09 0.00 5.73
137 138 4.733542 TAGCTTGTTGGCCCGGGC 62.734 66.667 38.57 38.57 41.06 6.13
200 201 5.801350 TGAGCATCAGTATAAACACAAGC 57.199 39.130 0.00 0.00 42.56 4.01
201 202 5.244755 TGAGCATCAGTATAAACACAAGCA 58.755 37.500 0.00 0.00 42.56 3.91
202 203 5.122239 TGAGCATCAGTATAAACACAAGCAC 59.878 40.000 0.00 0.00 42.56 4.40
203 204 4.093408 AGCATCAGTATAAACACAAGCACG 59.907 41.667 0.00 0.00 0.00 5.34
204 205 4.142902 GCATCAGTATAAACACAAGCACGT 60.143 41.667 0.00 0.00 0.00 4.49
205 206 4.983215 TCAGTATAAACACAAGCACGTG 57.017 40.909 12.28 12.28 42.81 4.49
206 207 3.185594 TCAGTATAAACACAAGCACGTGC 59.814 43.478 32.79 32.79 40.73 5.34
207 208 3.059257 CAGTATAAACACAAGCACGTGCA 60.059 43.478 39.21 18.82 45.16 4.57
208 209 3.751175 AGTATAAACACAAGCACGTGCAT 59.249 39.130 39.21 27.93 45.16 3.96
209 210 4.932799 AGTATAAACACAAGCACGTGCATA 59.067 37.500 39.21 22.92 45.16 3.14
210 211 2.399396 AAACACAAGCACGTGCATAC 57.601 45.000 39.21 13.07 45.16 2.39
211 212 1.304254 AACACAAGCACGTGCATACA 58.696 45.000 39.21 0.00 45.16 2.29
212 213 0.586319 ACACAAGCACGTGCATACAC 59.414 50.000 39.21 11.90 45.16 2.90
213 214 0.867746 CACAAGCACGTGCATACACT 59.132 50.000 39.21 17.54 45.10 3.55
214 215 1.136252 CACAAGCACGTGCATACACTC 60.136 52.381 39.21 10.35 45.10 3.51
215 216 1.147473 CAAGCACGTGCATACACTCA 58.853 50.000 39.21 0.00 45.10 3.41
216 217 1.733912 CAAGCACGTGCATACACTCAT 59.266 47.619 39.21 15.19 45.10 2.90
217 218 1.645034 AGCACGTGCATACACTCATC 58.355 50.000 39.21 8.27 45.10 2.92
218 219 0.652592 GCACGTGCATACACTCATCC 59.347 55.000 34.52 0.00 45.10 3.51
219 220 1.290203 CACGTGCATACACTCATCCC 58.710 55.000 0.82 0.00 45.10 3.85
220 221 1.134699 CACGTGCATACACTCATCCCT 60.135 52.381 0.82 0.00 45.10 4.20
221 222 2.100749 CACGTGCATACACTCATCCCTA 59.899 50.000 0.82 0.00 45.10 3.53
222 223 2.965831 ACGTGCATACACTCATCCCTAT 59.034 45.455 0.00 0.00 45.10 2.57
223 224 3.243873 ACGTGCATACACTCATCCCTATG 60.244 47.826 0.00 0.00 45.10 2.23
224 225 3.005791 CGTGCATACACTCATCCCTATGA 59.994 47.826 0.00 0.00 45.10 2.15
225 226 4.501400 CGTGCATACACTCATCCCTATGAA 60.501 45.833 0.00 0.00 45.10 2.57
226 227 4.752101 GTGCATACACTCATCCCTATGAAC 59.248 45.833 0.00 0.00 41.57 3.18
227 228 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
228 229 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
229 230 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
230 231 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
231 232 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
232 233 2.205074 CTCATCCCTATGAACGCACAC 58.795 52.381 0.00 0.00 41.57 3.82
233 234 1.552792 TCATCCCTATGAACGCACACA 59.447 47.619 0.00 0.00 39.20 3.72
234 235 1.665679 CATCCCTATGAACGCACACAC 59.334 52.381 0.00 0.00 34.84 3.82
235 236 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
236 237 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
237 238 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
238 239 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
239 240 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
240 241 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
241 242 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
244 245 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
245 246 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
246 247 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
247 248 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
248 249 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
249 250 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
250 251 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
251 252 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
252 253 2.244695 CACGCACACCCTATCCCTATA 58.755 52.381 0.00 0.00 0.00 1.31
253 254 2.631062 CACGCACACCCTATCCCTATAA 59.369 50.000 0.00 0.00 0.00 0.98
254 255 2.897969 ACGCACACCCTATCCCTATAAG 59.102 50.000 0.00 0.00 0.00 1.73
255 256 2.353803 CGCACACCCTATCCCTATAAGC 60.354 54.545 0.00 0.00 0.00 3.09
256 257 2.637872 GCACACCCTATCCCTATAAGCA 59.362 50.000 0.00 0.00 0.00 3.91
257 258 3.557264 GCACACCCTATCCCTATAAGCAC 60.557 52.174 0.00 0.00 0.00 4.40
258 259 3.008049 CACACCCTATCCCTATAAGCACC 59.992 52.174 0.00 0.00 0.00 5.01
259 260 3.116317 ACACCCTATCCCTATAAGCACCT 60.116 47.826 0.00 0.00 0.00 4.00
260 261 3.515901 CACCCTATCCCTATAAGCACCTC 59.484 52.174 0.00 0.00 0.00 3.85
261 262 3.108376 CCCTATCCCTATAAGCACCTCC 58.892 54.545 0.00 0.00 0.00 4.30
262 263 2.761208 CCTATCCCTATAAGCACCTCCG 59.239 54.545 0.00 0.00 0.00 4.63
263 264 2.696526 ATCCCTATAAGCACCTCCGA 57.303 50.000 0.00 0.00 0.00 4.55
264 265 1.996798 TCCCTATAAGCACCTCCGAG 58.003 55.000 0.00 0.00 0.00 4.63
265 266 1.497716 TCCCTATAAGCACCTCCGAGA 59.502 52.381 0.00 0.00 0.00 4.04
266 267 1.889829 CCCTATAAGCACCTCCGAGAG 59.110 57.143 0.00 0.00 0.00 3.20
267 268 2.489255 CCCTATAAGCACCTCCGAGAGA 60.489 54.545 0.00 0.00 0.00 3.10
268 269 2.554893 CCTATAAGCACCTCCGAGAGAC 59.445 54.545 0.00 0.00 0.00 3.36
269 270 2.445682 ATAAGCACCTCCGAGAGACT 57.554 50.000 0.00 0.00 0.00 3.24
270 271 1.464734 TAAGCACCTCCGAGAGACTG 58.535 55.000 0.00 0.22 0.00 3.51
271 272 0.251386 AAGCACCTCCGAGAGACTGA 60.251 55.000 0.00 0.00 0.00 3.41
272 273 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
273 274 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
274 275 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
275 276 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
276 277 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
277 278 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
278 279 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
279 280 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
280 281 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
281 282 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
282 283 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
283 284 0.965439 GAGACTGAGCCGGCATATCT 59.035 55.000 31.54 24.11 0.00 1.98
284 285 0.965439 AGACTGAGCCGGCATATCTC 59.035 55.000 31.54 17.80 0.00 2.75
285 286 0.387878 GACTGAGCCGGCATATCTCG 60.388 60.000 31.54 14.67 0.00 4.04
286 287 1.735920 CTGAGCCGGCATATCTCGC 60.736 63.158 31.54 7.38 0.00 5.03
287 288 2.433318 GAGCCGGCATATCTCGCC 60.433 66.667 31.54 1.64 46.62 5.54
294 295 2.882742 GGCATATCTCGCCGAAAATC 57.117 50.000 0.00 0.00 40.35 2.17
295 296 1.464997 GGCATATCTCGCCGAAAATCC 59.535 52.381 0.00 0.00 40.35 3.01
296 297 2.417719 GCATATCTCGCCGAAAATCCT 58.582 47.619 0.00 0.00 0.00 3.24
297 298 2.158449 GCATATCTCGCCGAAAATCCTG 59.842 50.000 0.00 0.00 0.00 3.86
298 299 3.653344 CATATCTCGCCGAAAATCCTGA 58.347 45.455 0.00 0.00 0.00 3.86
299 300 2.691409 ATCTCGCCGAAAATCCTGAA 57.309 45.000 0.00 0.00 0.00 3.02
300 301 2.465860 TCTCGCCGAAAATCCTGAAA 57.534 45.000 0.00 0.00 0.00 2.69
301 302 2.985896 TCTCGCCGAAAATCCTGAAAT 58.014 42.857 0.00 0.00 0.00 2.17
302 303 4.131649 TCTCGCCGAAAATCCTGAAATA 57.868 40.909 0.00 0.00 0.00 1.40
303 304 4.509616 TCTCGCCGAAAATCCTGAAATAA 58.490 39.130 0.00 0.00 0.00 1.40
304 305 4.938832 TCTCGCCGAAAATCCTGAAATAAA 59.061 37.500 0.00 0.00 0.00 1.40
305 306 5.588648 TCTCGCCGAAAATCCTGAAATAAAT 59.411 36.000 0.00 0.00 0.00 1.40
306 307 5.816919 TCGCCGAAAATCCTGAAATAAATC 58.183 37.500 0.00 0.00 0.00 2.17
307 308 4.976116 CGCCGAAAATCCTGAAATAAATCC 59.024 41.667 0.00 0.00 0.00 3.01
308 309 5.449862 CGCCGAAAATCCTGAAATAAATCCA 60.450 40.000 0.00 0.00 0.00 3.41
309 310 5.979517 GCCGAAAATCCTGAAATAAATCCAG 59.020 40.000 0.00 0.00 0.00 3.86
310 311 6.507023 CCGAAAATCCTGAAATAAATCCAGG 58.493 40.000 0.00 0.00 46.64 4.45
320 321 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
321 322 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
322 323 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
323 324 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
324 325 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
325 326 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
326 327 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
327 328 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
328 329 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
329 330 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
330 331 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
331 332 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
332 333 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
333 334 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
334 335 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
335 336 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
336 337 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
337 338 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
338 339 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
339 340 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
344 345 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
356 357 2.364972 CCTGGTGGGTTGGGAATATC 57.635 55.000 0.00 0.00 0.00 1.63
357 358 1.568597 CCTGGTGGGTTGGGAATATCA 59.431 52.381 0.00 0.00 0.00 2.15
358 359 2.654863 CTGGTGGGTTGGGAATATCAC 58.345 52.381 0.00 0.00 0.00 3.06
359 360 2.242196 CTGGTGGGTTGGGAATATCACT 59.758 50.000 0.00 0.00 0.00 3.41
360 361 2.025416 TGGTGGGTTGGGAATATCACTG 60.025 50.000 0.00 0.00 0.00 3.66
361 362 2.025321 GGTGGGTTGGGAATATCACTGT 60.025 50.000 0.00 0.00 0.00 3.55
362 363 3.279434 GTGGGTTGGGAATATCACTGTC 58.721 50.000 0.00 0.00 0.00 3.51
363 364 2.241176 TGGGTTGGGAATATCACTGTCC 59.759 50.000 0.00 0.00 0.00 4.02
364 365 2.241176 GGGTTGGGAATATCACTGTCCA 59.759 50.000 0.00 0.00 32.70 4.02
365 366 3.279434 GGTTGGGAATATCACTGTCCAC 58.721 50.000 0.00 0.00 32.70 4.02
366 367 3.279434 GTTGGGAATATCACTGTCCACC 58.721 50.000 0.00 0.00 32.70 4.61
367 368 2.845659 TGGGAATATCACTGTCCACCT 58.154 47.619 0.00 0.00 32.70 4.00
368 369 4.002256 TGGGAATATCACTGTCCACCTA 57.998 45.455 0.00 0.00 32.70 3.08
369 370 4.367166 TGGGAATATCACTGTCCACCTAA 58.633 43.478 0.00 0.00 32.70 2.69
370 371 4.163458 TGGGAATATCACTGTCCACCTAAC 59.837 45.833 0.00 0.00 32.70 2.34
371 372 4.444449 GGGAATATCACTGTCCACCTAACC 60.444 50.000 0.00 0.00 32.70 2.85
372 373 4.163458 GGAATATCACTGTCCACCTAACCA 59.837 45.833 0.00 0.00 0.00 3.67
373 374 5.338871 GGAATATCACTGTCCACCTAACCAA 60.339 44.000 0.00 0.00 0.00 3.67
374 375 2.922740 TCACTGTCCACCTAACCAAC 57.077 50.000 0.00 0.00 0.00 3.77
375 376 2.404559 TCACTGTCCACCTAACCAACT 58.595 47.619 0.00 0.00 0.00 3.16
376 377 2.367567 TCACTGTCCACCTAACCAACTC 59.632 50.000 0.00 0.00 0.00 3.01
377 378 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
378 379 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
379 380 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
380 381 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
381 382 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
382 383 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
383 384 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
384 385 3.486383 CACCTAACCAACTCAACCACAT 58.514 45.455 0.00 0.00 0.00 3.21
385 386 3.253188 CACCTAACCAACTCAACCACATG 59.747 47.826 0.00 0.00 0.00 3.21
386 387 3.117663 ACCTAACCAACTCAACCACATGT 60.118 43.478 0.00 0.00 0.00 3.21
387 388 3.888930 CCTAACCAACTCAACCACATGTT 59.111 43.478 0.00 0.00 37.80 2.71
396 397 1.234821 AACCACATGTTGATTCGCGT 58.765 45.000 5.77 0.00 35.31 6.01
397 398 0.516877 ACCACATGTTGATTCGCGTG 59.483 50.000 5.77 0.00 0.00 5.34
398 399 0.179192 CCACATGTTGATTCGCGTGG 60.179 55.000 5.77 0.00 38.11 4.94
399 400 0.794229 CACATGTTGATTCGCGTGGC 60.794 55.000 5.77 0.00 0.00 5.01
400 401 0.955428 ACATGTTGATTCGCGTGGCT 60.955 50.000 5.77 0.00 0.00 4.75
401 402 0.247814 CATGTTGATTCGCGTGGCTC 60.248 55.000 5.77 0.00 0.00 4.70
402 403 1.369091 ATGTTGATTCGCGTGGCTCC 61.369 55.000 5.77 0.00 0.00 4.70
403 404 2.813474 TTGATTCGCGTGGCTCCG 60.813 61.111 5.77 0.00 0.00 4.63
415 416 3.443045 GCTCCGCCATTGGGTGTG 61.443 66.667 4.53 0.00 43.45 3.82
416 417 2.350895 CTCCGCCATTGGGTGTGA 59.649 61.111 4.53 0.00 43.45 3.58
417 418 2.033448 TCCGCCATTGGGTGTGAC 59.967 61.111 4.53 0.00 43.45 3.67
418 419 3.430862 CCGCCATTGGGTGTGACG 61.431 66.667 4.53 0.00 43.45 4.35
419 420 3.430862 CGCCATTGGGTGTGACGG 61.431 66.667 4.53 0.00 39.94 4.79
420 421 2.033448 GCCATTGGGTGTGACGGA 59.967 61.111 4.53 0.00 36.17 4.69
421 422 1.602323 GCCATTGGGTGTGACGGAA 60.602 57.895 4.53 0.00 36.17 4.30
422 423 1.586154 GCCATTGGGTGTGACGGAAG 61.586 60.000 4.53 0.00 36.17 3.46
433 434 4.355925 ACGGAAGTGCTTCGTTCC 57.644 55.556 5.93 0.00 46.97 3.62
434 435 1.746517 ACGGAAGTGCTTCGTTCCT 59.253 52.632 5.93 0.00 46.97 3.36
435 436 0.106149 ACGGAAGTGCTTCGTTCCTT 59.894 50.000 5.93 0.00 46.97 3.36
436 437 1.226746 CGGAAGTGCTTCGTTCCTTT 58.773 50.000 5.93 0.00 40.24 3.11
437 438 1.194772 CGGAAGTGCTTCGTTCCTTTC 59.805 52.381 5.93 0.00 40.24 2.62
438 439 1.194772 GGAAGTGCTTCGTTCCTTTCG 59.805 52.381 5.93 0.00 39.42 3.46
439 440 0.586802 AAGTGCTTCGTTCCTTTCGC 59.413 50.000 0.00 0.00 0.00 4.70
440 441 0.249911 AGTGCTTCGTTCCTTTCGCT 60.250 50.000 0.00 0.00 0.00 4.93
441 442 0.586802 GTGCTTCGTTCCTTTCGCTT 59.413 50.000 0.00 0.00 0.00 4.68
442 443 0.586319 TGCTTCGTTCCTTTCGCTTG 59.414 50.000 0.00 0.00 0.00 4.01
443 444 0.726118 GCTTCGTTCCTTTCGCTTGC 60.726 55.000 0.00 0.00 0.00 4.01
444 445 0.110192 CTTCGTTCCTTTCGCTTGCC 60.110 55.000 0.00 0.00 0.00 4.52
445 446 0.816018 TTCGTTCCTTTCGCTTGCCA 60.816 50.000 0.00 0.00 0.00 4.92
446 447 1.082104 CGTTCCTTTCGCTTGCCAC 60.082 57.895 0.00 0.00 0.00 5.01
447 448 1.082104 GTTCCTTTCGCTTGCCACG 60.082 57.895 0.00 0.00 0.00 4.94
448 449 1.525077 TTCCTTTCGCTTGCCACGT 60.525 52.632 0.00 0.00 0.00 4.49
449 450 1.098712 TTCCTTTCGCTTGCCACGTT 61.099 50.000 0.00 0.00 0.00 3.99
450 451 1.082104 CCTTTCGCTTGCCACGTTC 60.082 57.895 0.00 0.00 0.00 3.95
451 452 1.507141 CCTTTCGCTTGCCACGTTCT 61.507 55.000 0.00 0.00 0.00 3.01
452 453 1.144969 CTTTCGCTTGCCACGTTCTA 58.855 50.000 0.00 0.00 0.00 2.10
453 454 1.732259 CTTTCGCTTGCCACGTTCTAT 59.268 47.619 0.00 0.00 0.00 1.98
454 455 1.355971 TTCGCTTGCCACGTTCTATC 58.644 50.000 0.00 0.00 0.00 2.08
455 456 0.459585 TCGCTTGCCACGTTCTATCC 60.460 55.000 0.00 0.00 0.00 2.59
456 457 1.429148 CGCTTGCCACGTTCTATCCC 61.429 60.000 0.00 0.00 0.00 3.85
457 458 0.392461 GCTTGCCACGTTCTATCCCA 60.392 55.000 0.00 0.00 0.00 4.37
458 459 1.747206 GCTTGCCACGTTCTATCCCAT 60.747 52.381 0.00 0.00 0.00 4.00
459 460 2.213499 CTTGCCACGTTCTATCCCATC 58.787 52.381 0.00 0.00 0.00 3.51
460 461 1.199615 TGCCACGTTCTATCCCATCA 58.800 50.000 0.00 0.00 0.00 3.07
461 462 1.768275 TGCCACGTTCTATCCCATCAT 59.232 47.619 0.00 0.00 0.00 2.45
462 463 2.146342 GCCACGTTCTATCCCATCATG 58.854 52.381 0.00 0.00 0.00 3.07
463 464 2.485479 GCCACGTTCTATCCCATCATGT 60.485 50.000 0.00 0.00 0.00 3.21
464 465 3.133691 CCACGTTCTATCCCATCATGTG 58.866 50.000 0.00 0.00 0.00 3.21
523 525 0.246360 TGTGACGCATGGAGTACCTG 59.754 55.000 0.00 0.00 37.04 4.00
524 526 1.084370 GTGACGCATGGAGTACCTGC 61.084 60.000 0.00 0.00 37.15 4.85
525 527 1.521681 GACGCATGGAGTACCTGCC 60.522 63.158 0.00 0.00 37.17 4.85
526 528 1.961180 GACGCATGGAGTACCTGCCT 61.961 60.000 0.00 0.00 37.17 4.75
569 571 4.864704 TCTTGGGCCTGTAACATTTTTC 57.135 40.909 4.53 0.00 0.00 2.29
570 572 4.219115 TCTTGGGCCTGTAACATTTTTCA 58.781 39.130 4.53 0.00 0.00 2.69
571 573 4.038642 TCTTGGGCCTGTAACATTTTTCAC 59.961 41.667 4.53 0.00 0.00 3.18
572 574 2.294791 TGGGCCTGTAACATTTTTCACG 59.705 45.455 4.53 0.00 0.00 4.35
573 575 2.295070 GGGCCTGTAACATTTTTCACGT 59.705 45.455 0.84 0.00 0.00 4.49
574 576 3.305110 GGCCTGTAACATTTTTCACGTG 58.695 45.455 9.94 9.94 0.00 4.49
575 577 3.243267 GGCCTGTAACATTTTTCACGTGT 60.243 43.478 16.51 0.00 0.00 4.49
576 578 4.356289 GCCTGTAACATTTTTCACGTGTT 58.644 39.130 16.51 2.87 39.26 3.32
577 579 4.801516 GCCTGTAACATTTTTCACGTGTTT 59.198 37.500 16.51 1.72 37.30 2.83
578 580 5.289917 GCCTGTAACATTTTTCACGTGTTTT 59.710 36.000 16.51 0.00 37.30 2.43
579 581 6.183360 GCCTGTAACATTTTTCACGTGTTTTT 60.183 34.615 16.51 3.39 37.30 1.94
600 602 5.432885 TTTTAGAACGAAGGCTCAAAAGG 57.567 39.130 0.00 0.00 0.00 3.11
601 603 2.930826 AGAACGAAGGCTCAAAAGGA 57.069 45.000 0.00 0.00 0.00 3.36
602 604 3.208747 AGAACGAAGGCTCAAAAGGAA 57.791 42.857 0.00 0.00 0.00 3.36
603 605 3.756117 AGAACGAAGGCTCAAAAGGAAT 58.244 40.909 0.00 0.00 0.00 3.01
604 606 3.753797 AGAACGAAGGCTCAAAAGGAATC 59.246 43.478 0.00 0.00 0.00 2.52
605 607 2.437413 ACGAAGGCTCAAAAGGAATCC 58.563 47.619 0.00 0.00 0.00 3.01
606 608 1.398390 CGAAGGCTCAAAAGGAATCCG 59.602 52.381 0.00 0.00 0.00 4.18
607 609 1.745653 GAAGGCTCAAAAGGAATCCGG 59.254 52.381 0.00 0.00 0.00 5.14
608 610 0.681243 AGGCTCAAAAGGAATCCGGC 60.681 55.000 0.00 0.00 0.00 6.13
609 611 0.681243 GGCTCAAAAGGAATCCGGCT 60.681 55.000 0.00 0.00 0.00 5.52
610 612 1.177401 GCTCAAAAGGAATCCGGCTT 58.823 50.000 0.00 0.00 0.00 4.35
611 613 1.546029 GCTCAAAAGGAATCCGGCTTT 59.454 47.619 0.00 0.00 0.00 3.51
612 614 2.672195 GCTCAAAAGGAATCCGGCTTTG 60.672 50.000 14.36 14.36 0.00 2.77
613 615 2.819608 CTCAAAAGGAATCCGGCTTTGA 59.180 45.455 19.01 19.01 33.71 2.69
614 616 3.226777 TCAAAAGGAATCCGGCTTTGAA 58.773 40.909 18.33 7.91 32.70 2.69
615 617 3.831911 TCAAAAGGAATCCGGCTTTGAAT 59.168 39.130 18.33 0.00 32.70 2.57
616 618 4.283212 TCAAAAGGAATCCGGCTTTGAATT 59.717 37.500 18.33 0.00 32.70 2.17
617 619 5.478679 TCAAAAGGAATCCGGCTTTGAATTA 59.521 36.000 18.33 3.58 32.70 1.40
618 620 5.993748 AAAGGAATCCGGCTTTGAATTAA 57.006 34.783 0.00 0.00 0.00 1.40
619 621 4.983671 AGGAATCCGGCTTTGAATTAAC 57.016 40.909 0.00 0.00 0.00 2.01
620 622 4.340617 AGGAATCCGGCTTTGAATTAACA 58.659 39.130 0.00 0.00 0.00 2.41
621 623 4.770010 AGGAATCCGGCTTTGAATTAACAA 59.230 37.500 0.00 0.00 0.00 2.83
622 624 5.245075 AGGAATCCGGCTTTGAATTAACAAA 59.755 36.000 0.00 0.00 37.98 2.83
632 634 7.120789 CTTTGAATTAACAAAGCCATCAACC 57.879 36.000 6.67 0.00 46.05 3.77
633 635 4.804108 TGAATTAACAAAGCCATCAACCG 58.196 39.130 0.00 0.00 0.00 4.44
634 636 3.866883 ATTAACAAAGCCATCAACCGG 57.133 42.857 0.00 0.00 0.00 5.28
640 642 4.424711 GCCATCAACCGGCCAGGA 62.425 66.667 18.74 3.02 44.22 3.86
641 643 2.597340 CCATCAACCGGCCAGGAT 59.403 61.111 18.74 5.67 45.00 3.24
642 644 1.076777 CCATCAACCGGCCAGGATT 60.077 57.895 18.74 7.79 45.00 3.01
643 645 0.182537 CCATCAACCGGCCAGGATTA 59.817 55.000 18.74 1.01 45.00 1.75
644 646 1.308998 CATCAACCGGCCAGGATTAC 58.691 55.000 18.74 0.00 45.00 1.89
645 647 0.916086 ATCAACCGGCCAGGATTACA 59.084 50.000 18.74 0.75 45.00 2.41
646 648 0.693622 TCAACCGGCCAGGATTACAA 59.306 50.000 18.74 0.00 45.00 2.41
647 649 0.808755 CAACCGGCCAGGATTACAAC 59.191 55.000 18.74 0.00 45.00 3.32
648 650 0.696501 AACCGGCCAGGATTACAACT 59.303 50.000 18.74 0.00 45.00 3.16
649 651 0.696501 ACCGGCCAGGATTACAACTT 59.303 50.000 18.74 0.00 45.00 2.66
650 652 1.074889 ACCGGCCAGGATTACAACTTT 59.925 47.619 18.74 0.00 45.00 2.66
651 653 2.306512 ACCGGCCAGGATTACAACTTTA 59.693 45.455 18.74 0.00 45.00 1.85
652 654 3.244981 ACCGGCCAGGATTACAACTTTAA 60.245 43.478 18.74 0.00 45.00 1.52
653 655 3.759618 CCGGCCAGGATTACAACTTTAAA 59.240 43.478 2.24 0.00 45.00 1.52
654 656 4.401202 CCGGCCAGGATTACAACTTTAAAT 59.599 41.667 2.24 0.00 45.00 1.40
655 657 5.591067 CCGGCCAGGATTACAACTTTAAATA 59.409 40.000 2.24 0.00 45.00 1.40
656 658 6.095720 CCGGCCAGGATTACAACTTTAAATAA 59.904 38.462 2.24 0.00 45.00 1.40
657 659 6.970613 CGGCCAGGATTACAACTTTAAATAAC 59.029 38.462 2.24 0.00 0.00 1.89
658 660 7.362229 CGGCCAGGATTACAACTTTAAATAACA 60.362 37.037 2.24 0.00 0.00 2.41
659 661 8.474831 GGCCAGGATTACAACTTTAAATAACAT 58.525 33.333 0.00 0.00 0.00 2.71
660 662 9.516314 GCCAGGATTACAACTTTAAATAACATC 57.484 33.333 0.00 0.00 0.00 3.06
669 671 9.877178 ACAACTTTAAATAACATCAAACACCAA 57.123 25.926 0.00 0.00 0.00 3.67
724 726 4.150994 GGTTGGCACTTTGACCGA 57.849 55.556 0.00 0.00 0.00 4.69
811 813 0.175760 CGAGTCCAATCCCGTGTCAT 59.824 55.000 0.00 0.00 0.00 3.06
814 816 0.108329 GTCCAATCCCGTGTCATCGT 60.108 55.000 0.00 0.00 0.00 3.73
1631 2868 8.658609 CAGTTCAGTTTTTATGCAAAATATGGG 58.341 33.333 0.00 0.00 36.72 4.00
2210 3613 5.769662 TGCAAGGACACATTCTGTATTCTTT 59.230 36.000 0.00 0.00 31.03 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.106569 AAGGATGCGATGCCCATTGA 60.107 50.000 0.00 0.00 0.00 2.57
1 2 0.748450 AAAGGATGCGATGCCCATTG 59.252 50.000 0.00 0.00 0.00 2.82
2 3 2.233271 CTAAAGGATGCGATGCCCATT 58.767 47.619 0.00 0.00 0.00 3.16
3 4 1.143684 ACTAAAGGATGCGATGCCCAT 59.856 47.619 0.00 0.00 0.00 4.00
4 5 0.546122 ACTAAAGGATGCGATGCCCA 59.454 50.000 0.00 0.00 0.00 5.36
5 6 2.143925 GTACTAAAGGATGCGATGCCC 58.856 52.381 0.00 0.00 0.00 5.36
6 7 3.113260 AGTACTAAAGGATGCGATGCC 57.887 47.619 0.00 0.00 0.00 4.40
7 8 6.216750 CTTTAGTACTAAAGGATGCGATGC 57.783 41.667 33.83 0.00 44.96 3.91
18 19 3.264964 CACCTGGGCCCTTTAGTACTAAA 59.735 47.826 25.70 23.31 34.28 1.85
19 20 2.841881 CACCTGGGCCCTTTAGTACTAA 59.158 50.000 25.70 11.38 0.00 2.24
20 21 2.044769 TCACCTGGGCCCTTTAGTACTA 59.955 50.000 25.70 0.00 0.00 1.82
21 22 1.203389 TCACCTGGGCCCTTTAGTACT 60.203 52.381 25.70 0.00 0.00 2.73
22 23 1.282382 TCACCTGGGCCCTTTAGTAC 58.718 55.000 25.70 0.00 0.00 2.73
23 24 1.631898 GTTCACCTGGGCCCTTTAGTA 59.368 52.381 25.70 0.00 0.00 1.82
24 25 0.404426 GTTCACCTGGGCCCTTTAGT 59.596 55.000 25.70 12.09 0.00 2.24
25 26 0.323451 GGTTCACCTGGGCCCTTTAG 60.323 60.000 25.70 12.48 0.00 1.85
26 27 1.771646 GGTTCACCTGGGCCCTTTA 59.228 57.895 25.70 0.48 0.00 1.85
27 28 2.526110 GGTTCACCTGGGCCCTTT 59.474 61.111 25.70 3.52 0.00 3.11
28 29 3.966543 CGGTTCACCTGGGCCCTT 61.967 66.667 25.70 3.96 0.00 3.95
31 32 2.781431 AATTCCGGTTCACCTGGGCC 62.781 60.000 0.00 0.00 32.84 5.80
32 33 0.034863 TAATTCCGGTTCACCTGGGC 60.035 55.000 0.00 0.00 32.84 5.36
33 34 2.500392 TTAATTCCGGTTCACCTGGG 57.500 50.000 0.00 0.00 32.84 4.45
34 35 3.352648 ACATTAATTCCGGTTCACCTGG 58.647 45.455 0.00 0.00 0.00 4.45
35 36 4.261801 AGACATTAATTCCGGTTCACCTG 58.738 43.478 0.00 0.00 0.00 4.00
36 37 4.569719 AGACATTAATTCCGGTTCACCT 57.430 40.909 0.00 0.00 0.00 4.00
37 38 5.220796 GCTAAGACATTAATTCCGGTTCACC 60.221 44.000 0.00 0.00 0.00 4.02
38 39 5.220796 GGCTAAGACATTAATTCCGGTTCAC 60.221 44.000 0.00 0.00 0.00 3.18
39 40 4.879545 GGCTAAGACATTAATTCCGGTTCA 59.120 41.667 0.00 0.00 0.00 3.18
40 41 4.025145 CGGCTAAGACATTAATTCCGGTTC 60.025 45.833 0.00 0.00 30.74 3.62
41 42 3.875134 CGGCTAAGACATTAATTCCGGTT 59.125 43.478 0.00 0.00 30.74 4.44
42 43 3.463944 CGGCTAAGACATTAATTCCGGT 58.536 45.455 0.00 0.00 30.74 5.28
43 44 2.223377 GCGGCTAAGACATTAATTCCGG 59.777 50.000 0.00 0.00 32.98 5.14
44 45 2.869801 TGCGGCTAAGACATTAATTCCG 59.130 45.455 0.00 0.00 34.29 4.30
45 46 4.515191 TCATGCGGCTAAGACATTAATTCC 59.485 41.667 0.00 0.00 0.00 3.01
46 47 5.673337 TCATGCGGCTAAGACATTAATTC 57.327 39.130 0.00 0.00 0.00 2.17
47 48 5.221048 GGTTCATGCGGCTAAGACATTAATT 60.221 40.000 0.00 0.00 0.00 1.40
48 49 4.275936 GGTTCATGCGGCTAAGACATTAAT 59.724 41.667 0.00 0.00 0.00 1.40
49 50 3.625764 GGTTCATGCGGCTAAGACATTAA 59.374 43.478 0.00 0.00 0.00 1.40
50 51 3.202906 GGTTCATGCGGCTAAGACATTA 58.797 45.455 0.00 0.00 0.00 1.90
51 52 2.017049 GGTTCATGCGGCTAAGACATT 58.983 47.619 0.00 0.00 0.00 2.71
52 53 1.668419 GGTTCATGCGGCTAAGACAT 58.332 50.000 0.00 0.00 0.00 3.06
53 54 0.739462 CGGTTCATGCGGCTAAGACA 60.739 55.000 0.00 0.00 0.00 3.41
54 55 1.429148 CCGGTTCATGCGGCTAAGAC 61.429 60.000 0.00 0.00 0.00 3.01
55 56 1.153449 CCGGTTCATGCGGCTAAGA 60.153 57.895 0.00 0.00 0.00 2.10
56 57 2.180204 CCCGGTTCATGCGGCTAAG 61.180 63.158 0.00 0.00 0.00 2.18
57 58 1.978455 ATCCCGGTTCATGCGGCTAA 61.978 55.000 0.00 0.00 0.00 3.09
58 59 1.116536 TATCCCGGTTCATGCGGCTA 61.117 55.000 0.00 0.00 0.00 3.93
59 60 1.978455 TTATCCCGGTTCATGCGGCT 61.978 55.000 0.00 0.00 0.00 5.52
60 61 1.098712 TTTATCCCGGTTCATGCGGC 61.099 55.000 0.00 0.00 0.00 6.53
61 62 1.266718 CATTTATCCCGGTTCATGCGG 59.733 52.381 0.00 3.49 0.00 5.69
62 63 1.334960 GCATTTATCCCGGTTCATGCG 60.335 52.381 0.00 0.00 0.00 4.73
63 64 1.680735 TGCATTTATCCCGGTTCATGC 59.319 47.619 0.00 7.50 38.00 4.06
64 65 2.034558 GGTGCATTTATCCCGGTTCATG 59.965 50.000 0.00 0.00 0.00 3.07
65 66 2.306847 GGTGCATTTATCCCGGTTCAT 58.693 47.619 0.00 0.00 0.00 2.57
66 67 1.683629 GGGTGCATTTATCCCGGTTCA 60.684 52.381 0.00 0.00 0.00 3.18
67 68 1.029681 GGGTGCATTTATCCCGGTTC 58.970 55.000 0.00 0.00 0.00 3.62
68 69 0.333312 TGGGTGCATTTATCCCGGTT 59.667 50.000 0.00 0.00 43.75 4.44
69 70 0.555769 ATGGGTGCATTTATCCCGGT 59.444 50.000 0.00 0.00 43.75 5.28
70 71 1.340889 CAATGGGTGCATTTATCCCGG 59.659 52.381 4.96 0.00 43.75 5.73
71 72 1.340889 CCAATGGGTGCATTTATCCCG 59.659 52.381 4.96 0.00 43.75 5.14
84 85 4.870123 TCAGTGATTTTTGACCAATGGG 57.130 40.909 3.55 0.00 41.29 4.00
85 86 5.786311 ACATCAGTGATTTTTGACCAATGG 58.214 37.500 1.86 0.00 0.00 3.16
86 87 8.865978 CATTACATCAGTGATTTTTGACCAATG 58.134 33.333 1.86 0.00 0.00 2.82
87 88 8.805175 TCATTACATCAGTGATTTTTGACCAAT 58.195 29.630 1.86 0.00 0.00 3.16
88 89 8.175925 TCATTACATCAGTGATTTTTGACCAA 57.824 30.769 1.86 0.00 0.00 3.67
89 90 7.448161 ACTCATTACATCAGTGATTTTTGACCA 59.552 33.333 1.86 0.00 0.00 4.02
90 91 7.820648 ACTCATTACATCAGTGATTTTTGACC 58.179 34.615 1.86 0.00 0.00 4.02
105 106 9.003658 GCCAACAAGCTAATATACTCATTACAT 57.996 33.333 0.00 0.00 0.00 2.29
106 107 7.444183 GGCCAACAAGCTAATATACTCATTACA 59.556 37.037 0.00 0.00 0.00 2.41
107 108 7.094762 GGGCCAACAAGCTAATATACTCATTAC 60.095 40.741 4.39 0.00 0.00 1.89
108 109 6.940298 GGGCCAACAAGCTAATATACTCATTA 59.060 38.462 4.39 0.00 0.00 1.90
109 110 5.770162 GGGCCAACAAGCTAATATACTCATT 59.230 40.000 4.39 0.00 0.00 2.57
110 111 5.316987 GGGCCAACAAGCTAATATACTCAT 58.683 41.667 4.39 0.00 0.00 2.90
111 112 4.714632 GGGCCAACAAGCTAATATACTCA 58.285 43.478 4.39 0.00 0.00 3.41
112 113 3.746492 CGGGCCAACAAGCTAATATACTC 59.254 47.826 4.39 0.00 0.00 2.59
113 114 3.496160 CCGGGCCAACAAGCTAATATACT 60.496 47.826 4.39 0.00 0.00 2.12
114 115 2.812011 CCGGGCCAACAAGCTAATATAC 59.188 50.000 4.39 0.00 0.00 1.47
115 116 2.224670 CCCGGGCCAACAAGCTAATATA 60.225 50.000 8.08 0.00 0.00 0.86
116 117 1.478654 CCCGGGCCAACAAGCTAATAT 60.479 52.381 8.08 0.00 0.00 1.28
117 118 0.106918 CCCGGGCCAACAAGCTAATA 60.107 55.000 8.08 0.00 0.00 0.98
118 119 1.379843 CCCGGGCCAACAAGCTAAT 60.380 57.895 8.08 0.00 0.00 1.73
119 120 2.034999 CCCGGGCCAACAAGCTAA 59.965 61.111 8.08 0.00 0.00 3.09
120 121 4.733542 GCCCGGGCCAACAAGCTA 62.734 66.667 36.64 0.00 34.56 3.32
174 175 7.594758 GCTTGTGTTTATACTGATGCTCAAAAA 59.405 33.333 0.00 0.00 0.00 1.94
175 176 7.083858 GCTTGTGTTTATACTGATGCTCAAAA 58.916 34.615 0.00 0.00 0.00 2.44
176 177 6.206438 TGCTTGTGTTTATACTGATGCTCAAA 59.794 34.615 0.00 0.00 0.00 2.69
177 178 5.704978 TGCTTGTGTTTATACTGATGCTCAA 59.295 36.000 0.00 0.00 0.00 3.02
178 179 5.122239 GTGCTTGTGTTTATACTGATGCTCA 59.878 40.000 0.00 0.00 0.00 4.26
179 180 5.563842 GTGCTTGTGTTTATACTGATGCTC 58.436 41.667 0.00 0.00 0.00 4.26
180 181 4.093408 CGTGCTTGTGTTTATACTGATGCT 59.907 41.667 0.00 0.00 0.00 3.79
181 182 4.142902 ACGTGCTTGTGTTTATACTGATGC 60.143 41.667 0.00 0.00 0.00 3.91
182 183 5.315982 CACGTGCTTGTGTTTATACTGATG 58.684 41.667 0.82 0.00 35.12 3.07
183 184 4.142902 GCACGTGCTTGTGTTTATACTGAT 60.143 41.667 32.55 0.00 41.94 2.90
184 185 3.185594 GCACGTGCTTGTGTTTATACTGA 59.814 43.478 32.55 0.00 41.94 3.41
185 186 3.059257 TGCACGTGCTTGTGTTTATACTG 60.059 43.478 37.59 0.00 41.94 2.74
186 187 3.135225 TGCACGTGCTTGTGTTTATACT 58.865 40.909 37.59 0.00 41.94 2.12
187 188 3.529634 TGCACGTGCTTGTGTTTATAC 57.470 42.857 37.59 8.00 41.94 1.47
188 189 4.691216 TGTATGCACGTGCTTGTGTTTATA 59.309 37.500 37.59 22.28 41.94 0.98
189 190 3.500299 TGTATGCACGTGCTTGTGTTTAT 59.500 39.130 37.59 23.28 41.94 1.40
190 191 2.872858 TGTATGCACGTGCTTGTGTTTA 59.127 40.909 37.59 18.13 41.94 2.01
191 192 1.673400 TGTATGCACGTGCTTGTGTTT 59.327 42.857 37.59 17.22 41.94 2.83
192 193 1.002900 GTGTATGCACGTGCTTGTGTT 60.003 47.619 37.59 18.79 41.94 3.32
193 194 0.586319 GTGTATGCACGTGCTTGTGT 59.414 50.000 37.59 21.21 41.94 3.72
194 195 3.366392 GTGTATGCACGTGCTTGTG 57.634 52.632 37.59 2.70 42.66 3.33
203 204 4.607293 TCATAGGGATGAGTGTATGCAC 57.393 45.455 5.71 5.71 45.57 4.57
204 205 4.501400 CGTTCATAGGGATGAGTGTATGCA 60.501 45.833 0.00 0.00 43.03 3.96
205 206 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
206 207 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
207 208 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
208 209 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
209 210 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
210 211 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
211 212 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
212 213 2.205074 GTGTGCGTTCATAGGGATGAG 58.795 52.381 0.00 0.00 43.03 2.90
213 214 1.552792 TGTGTGCGTTCATAGGGATGA 59.447 47.619 0.00 0.00 40.45 2.92
214 215 1.665679 GTGTGTGCGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
215 216 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
216 217 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
217 218 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
218 219 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
219 220 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
220 221 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
221 222 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
222 223 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
223 224 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
224 225 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
227 228 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
228 229 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
229 230 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
230 231 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
231 232 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
232 233 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
233 234 2.688902 TATAGGGATAGGGTGTGCGT 57.311 50.000 0.00 0.00 0.00 5.24
234 235 2.353803 GCTTATAGGGATAGGGTGTGCG 60.354 54.545 0.00 0.00 0.00 5.34
235 236 2.637872 TGCTTATAGGGATAGGGTGTGC 59.362 50.000 0.00 0.00 0.00 4.57
236 237 3.008049 GGTGCTTATAGGGATAGGGTGTG 59.992 52.174 0.00 0.00 0.00 3.82
237 238 3.116317 AGGTGCTTATAGGGATAGGGTGT 60.116 47.826 0.00 0.00 0.00 4.16
238 239 3.515901 GAGGTGCTTATAGGGATAGGGTG 59.484 52.174 0.00 0.00 0.00 4.61
239 240 3.504343 GGAGGTGCTTATAGGGATAGGGT 60.504 52.174 0.00 0.00 0.00 4.34
240 241 3.108376 GGAGGTGCTTATAGGGATAGGG 58.892 54.545 0.00 0.00 0.00 3.53
241 242 2.761208 CGGAGGTGCTTATAGGGATAGG 59.239 54.545 0.00 0.00 0.00 2.57
242 243 3.697045 CTCGGAGGTGCTTATAGGGATAG 59.303 52.174 0.00 0.00 0.00 2.08
243 244 3.332783 TCTCGGAGGTGCTTATAGGGATA 59.667 47.826 4.96 0.00 0.00 2.59
244 245 2.110188 TCTCGGAGGTGCTTATAGGGAT 59.890 50.000 4.96 0.00 0.00 3.85
245 246 1.497716 TCTCGGAGGTGCTTATAGGGA 59.502 52.381 4.96 0.00 0.00 4.20
246 247 1.889829 CTCTCGGAGGTGCTTATAGGG 59.110 57.143 4.96 0.00 0.00 3.53
247 248 2.554893 GTCTCTCGGAGGTGCTTATAGG 59.445 54.545 4.96 0.00 0.00 2.57
248 249 3.252215 CAGTCTCTCGGAGGTGCTTATAG 59.748 52.174 4.96 0.00 0.00 1.31
249 250 3.118000 TCAGTCTCTCGGAGGTGCTTATA 60.118 47.826 4.96 0.00 0.00 0.98
250 251 2.028130 CAGTCTCTCGGAGGTGCTTAT 58.972 52.381 4.96 0.00 0.00 1.73
251 252 1.004394 TCAGTCTCTCGGAGGTGCTTA 59.996 52.381 4.96 0.00 0.00 3.09
252 253 0.251386 TCAGTCTCTCGGAGGTGCTT 60.251 55.000 4.96 0.00 0.00 3.91
253 254 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
254 255 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
255 256 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
256 257 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
257 258 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
258 259 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
259 260 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
260 261 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
261 262 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
262 263 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
263 264 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
264 265 0.965439 AGATATGCCGGCTCAGTCTC 59.035 55.000 29.70 14.92 0.00 3.36
265 266 0.965439 GAGATATGCCGGCTCAGTCT 59.035 55.000 29.70 23.41 0.00 3.24
266 267 0.387878 CGAGATATGCCGGCTCAGTC 60.388 60.000 29.70 19.22 0.00 3.51
267 268 1.662608 CGAGATATGCCGGCTCAGT 59.337 57.895 29.70 13.44 0.00 3.41
268 269 1.735920 GCGAGATATGCCGGCTCAG 60.736 63.158 29.70 15.43 0.00 3.35
269 270 2.340078 GCGAGATATGCCGGCTCA 59.660 61.111 29.70 15.91 0.00 4.26
270 271 2.433318 GGCGAGATATGCCGGCTC 60.433 66.667 29.70 17.47 45.94 4.70
276 277 2.158449 CAGGATTTTCGGCGAGATATGC 59.842 50.000 10.46 10.19 0.00 3.14
277 278 3.653344 TCAGGATTTTCGGCGAGATATG 58.347 45.455 10.46 10.74 0.00 1.78
278 279 4.336889 TTCAGGATTTTCGGCGAGATAT 57.663 40.909 10.46 4.89 0.00 1.63
279 280 3.812156 TTCAGGATTTTCGGCGAGATA 57.188 42.857 10.46 0.00 0.00 1.98
280 281 2.691409 TTCAGGATTTTCGGCGAGAT 57.309 45.000 10.46 8.69 0.00 2.75
281 282 2.465860 TTTCAGGATTTTCGGCGAGA 57.534 45.000 10.46 1.71 0.00 4.04
282 283 4.875544 TTATTTCAGGATTTTCGGCGAG 57.124 40.909 10.46 0.00 0.00 5.03
283 284 5.220970 GGATTTATTTCAGGATTTTCGGCGA 60.221 40.000 4.99 4.99 0.00 5.54
284 285 4.976116 GGATTTATTTCAGGATTTTCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
285 286 5.901552 TGGATTTATTTCAGGATTTTCGGC 58.098 37.500 0.00 0.00 0.00 5.54
294 295 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
295 296 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
296 297 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
297 298 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
298 299 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
299 300 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
300 301 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
301 302 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
302 303 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
303 304 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
304 305 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
305 306 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
306 307 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
307 308 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
308 309 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
309 310 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
310 311 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
311 312 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
312 313 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
313 314 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
314 315 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
315 316 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
316 317 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
317 318 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
318 319 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
319 320 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
320 321 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
321 322 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
337 338 1.568597 TGATATTCCCAACCCACCAGG 59.431 52.381 0.00 0.00 43.78 4.45
338 339 2.242196 AGTGATATTCCCAACCCACCAG 59.758 50.000 0.00 0.00 0.00 4.00
339 340 2.025416 CAGTGATATTCCCAACCCACCA 60.025 50.000 0.00 0.00 0.00 4.17
340 341 2.025321 ACAGTGATATTCCCAACCCACC 60.025 50.000 0.00 0.00 0.00 4.61
341 342 3.279434 GACAGTGATATTCCCAACCCAC 58.721 50.000 0.00 0.00 0.00 4.61
342 343 2.241176 GGACAGTGATATTCCCAACCCA 59.759 50.000 0.00 0.00 0.00 4.51
343 344 2.241176 TGGACAGTGATATTCCCAACCC 59.759 50.000 0.00 0.00 0.00 4.11
344 345 3.279434 GTGGACAGTGATATTCCCAACC 58.721 50.000 0.00 0.00 0.00 3.77
345 346 3.054361 AGGTGGACAGTGATATTCCCAAC 60.054 47.826 0.00 0.00 0.00 3.77
346 347 3.189606 AGGTGGACAGTGATATTCCCAA 58.810 45.455 0.00 0.00 0.00 4.12
347 348 2.845659 AGGTGGACAGTGATATTCCCA 58.154 47.619 0.00 0.00 0.00 4.37
348 349 4.444449 GGTTAGGTGGACAGTGATATTCCC 60.444 50.000 0.00 0.00 0.00 3.97
349 350 4.163458 TGGTTAGGTGGACAGTGATATTCC 59.837 45.833 0.00 0.00 0.00 3.01
350 351 5.353394 TGGTTAGGTGGACAGTGATATTC 57.647 43.478 0.00 0.00 0.00 1.75
351 352 5.250774 AGTTGGTTAGGTGGACAGTGATATT 59.749 40.000 0.00 0.00 0.00 1.28
352 353 4.783227 AGTTGGTTAGGTGGACAGTGATAT 59.217 41.667 0.00 0.00 0.00 1.63
353 354 4.164981 AGTTGGTTAGGTGGACAGTGATA 58.835 43.478 0.00 0.00 0.00 2.15
354 355 2.979678 AGTTGGTTAGGTGGACAGTGAT 59.020 45.455 0.00 0.00 0.00 3.06
355 356 2.367567 GAGTTGGTTAGGTGGACAGTGA 59.632 50.000 0.00 0.00 0.00 3.41
356 357 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
357 358 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
358 359 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
359 360 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
360 361 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
361 362 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
362 363 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
363 364 2.925724 TGTGGTTGAGTTGGTTAGGTG 58.074 47.619 0.00 0.00 0.00 4.00
364 365 3.117663 ACATGTGGTTGAGTTGGTTAGGT 60.118 43.478 0.00 0.00 0.00 3.08
365 366 3.486383 ACATGTGGTTGAGTTGGTTAGG 58.514 45.455 0.00 0.00 0.00 2.69
377 378 1.069296 CACGCGAATCAACATGTGGTT 60.069 47.619 15.93 0.00 41.47 3.67
378 379 0.516877 CACGCGAATCAACATGTGGT 59.483 50.000 15.93 0.00 0.00 4.16
379 380 0.179192 CCACGCGAATCAACATGTGG 60.179 55.000 15.93 0.91 40.68 4.17
380 381 0.794229 GCCACGCGAATCAACATGTG 60.794 55.000 15.93 0.00 0.00 3.21
381 382 0.955428 AGCCACGCGAATCAACATGT 60.955 50.000 15.93 0.00 0.00 3.21
382 383 0.247814 GAGCCACGCGAATCAACATG 60.248 55.000 15.93 0.00 0.00 3.21
383 384 1.369091 GGAGCCACGCGAATCAACAT 61.369 55.000 15.93 0.00 0.00 2.71
384 385 2.032634 GGAGCCACGCGAATCAACA 61.033 57.895 15.93 0.00 0.00 3.33
385 386 2.785258 GGAGCCACGCGAATCAAC 59.215 61.111 15.93 0.00 0.00 3.18
386 387 2.813474 CGGAGCCACGCGAATCAA 60.813 61.111 15.93 0.00 0.00 2.57
399 400 2.040544 GTCACACCCAATGGCGGAG 61.041 63.158 0.00 0.00 33.59 4.63
400 401 2.033448 GTCACACCCAATGGCGGA 59.967 61.111 0.00 0.00 33.59 5.54
401 402 3.430862 CGTCACACCCAATGGCGG 61.431 66.667 0.00 0.00 41.41 6.13
402 403 3.430862 CCGTCACACCCAATGGCG 61.431 66.667 0.00 0.00 44.65 5.69
403 404 1.586154 CTTCCGTCACACCCAATGGC 61.586 60.000 0.00 0.00 33.59 4.40
404 405 0.250727 ACTTCCGTCACACCCAATGG 60.251 55.000 0.00 0.00 37.80 3.16
405 406 0.874390 CACTTCCGTCACACCCAATG 59.126 55.000 0.00 0.00 0.00 2.82
406 407 0.889186 GCACTTCCGTCACACCCAAT 60.889 55.000 0.00 0.00 0.00 3.16
407 408 1.525077 GCACTTCCGTCACACCCAA 60.525 57.895 0.00 0.00 0.00 4.12
408 409 1.978455 AAGCACTTCCGTCACACCCA 61.978 55.000 0.00 0.00 0.00 4.51
409 410 1.227853 AAGCACTTCCGTCACACCC 60.228 57.895 0.00 0.00 0.00 4.61
410 411 1.557443 CGAAGCACTTCCGTCACACC 61.557 60.000 4.86 0.00 36.27 4.16
411 412 0.874607 ACGAAGCACTTCCGTCACAC 60.875 55.000 4.86 0.00 36.27 3.82
412 413 0.179094 AACGAAGCACTTCCGTCACA 60.179 50.000 4.86 0.00 36.27 3.58
413 414 0.507358 GAACGAAGCACTTCCGTCAC 59.493 55.000 4.86 2.42 36.27 3.67
414 415 0.599204 GGAACGAAGCACTTCCGTCA 60.599 55.000 4.86 0.00 36.27 4.35
415 416 0.319641 AGGAACGAAGCACTTCCGTC 60.320 55.000 4.86 2.80 40.92 4.79
416 417 0.106149 AAGGAACGAAGCACTTCCGT 59.894 50.000 4.86 3.93 40.92 4.69
417 418 1.194772 GAAAGGAACGAAGCACTTCCG 59.805 52.381 4.86 3.36 40.92 4.30
418 419 1.194772 CGAAAGGAACGAAGCACTTCC 59.805 52.381 4.86 0.00 36.27 3.46
419 420 1.398578 GCGAAAGGAACGAAGCACTTC 60.399 52.381 0.07 0.07 36.29 3.01
420 421 0.586802 GCGAAAGGAACGAAGCACTT 59.413 50.000 0.00 0.00 0.00 3.16
421 422 0.249911 AGCGAAAGGAACGAAGCACT 60.250 50.000 0.00 0.00 0.00 4.40
422 423 0.586802 AAGCGAAAGGAACGAAGCAC 59.413 50.000 0.00 0.00 0.00 4.40
423 424 0.586319 CAAGCGAAAGGAACGAAGCA 59.414 50.000 0.00 0.00 0.00 3.91
424 425 0.726118 GCAAGCGAAAGGAACGAAGC 60.726 55.000 0.00 0.00 0.00 3.86
425 426 0.110192 GGCAAGCGAAAGGAACGAAG 60.110 55.000 0.00 0.00 0.00 3.79
426 427 0.816018 TGGCAAGCGAAAGGAACGAA 60.816 50.000 0.00 0.00 0.00 3.85
427 428 1.227704 TGGCAAGCGAAAGGAACGA 60.228 52.632 0.00 0.00 0.00 3.85
428 429 1.082104 GTGGCAAGCGAAAGGAACG 60.082 57.895 0.00 0.00 0.00 3.95
429 430 1.082104 CGTGGCAAGCGAAAGGAAC 60.082 57.895 0.00 0.00 0.00 3.62
430 431 1.098712 AACGTGGCAAGCGAAAGGAA 61.099 50.000 4.40 0.00 0.00 3.36
431 432 1.503818 GAACGTGGCAAGCGAAAGGA 61.504 55.000 4.40 0.00 0.00 3.36
432 433 1.082104 GAACGTGGCAAGCGAAAGG 60.082 57.895 4.40 0.00 0.00 3.11
433 434 1.144969 TAGAACGTGGCAAGCGAAAG 58.855 50.000 4.40 0.00 0.00 2.62
434 435 1.730064 GATAGAACGTGGCAAGCGAAA 59.270 47.619 4.40 0.00 0.00 3.46
435 436 1.355971 GATAGAACGTGGCAAGCGAA 58.644 50.000 4.40 0.00 0.00 4.70
436 437 0.459585 GGATAGAACGTGGCAAGCGA 60.460 55.000 4.40 0.00 0.00 4.93
437 438 1.429148 GGGATAGAACGTGGCAAGCG 61.429 60.000 0.00 0.00 0.00 4.68
438 439 0.392461 TGGGATAGAACGTGGCAAGC 60.392 55.000 0.00 0.00 0.00 4.01
439 440 2.213499 GATGGGATAGAACGTGGCAAG 58.787 52.381 0.00 0.00 0.00 4.01
440 441 1.557371 TGATGGGATAGAACGTGGCAA 59.443 47.619 0.00 0.00 0.00 4.52
441 442 1.199615 TGATGGGATAGAACGTGGCA 58.800 50.000 0.00 0.00 0.00 4.92
442 443 2.146342 CATGATGGGATAGAACGTGGC 58.854 52.381 0.00 0.00 0.00 5.01
443 444 3.133691 CACATGATGGGATAGAACGTGG 58.866 50.000 0.00 0.00 0.00 4.94
444 445 3.133691 CCACATGATGGGATAGAACGTG 58.866 50.000 0.00 0.00 45.95 4.49
445 446 3.475566 CCACATGATGGGATAGAACGT 57.524 47.619 0.00 0.00 45.95 3.99
472 473 3.567585 TCCACACGATGAATGCTCAAAAA 59.432 39.130 0.00 0.00 34.49 1.94
473 474 3.058293 GTCCACACGATGAATGCTCAAAA 60.058 43.478 0.00 0.00 34.49 2.44
474 475 2.483877 GTCCACACGATGAATGCTCAAA 59.516 45.455 0.00 0.00 34.49 2.69
475 476 2.076100 GTCCACACGATGAATGCTCAA 58.924 47.619 0.00 0.00 34.49 3.02
476 477 1.276138 AGTCCACACGATGAATGCTCA 59.724 47.619 0.00 0.00 35.56 4.26
477 478 2.015736 AGTCCACACGATGAATGCTC 57.984 50.000 0.00 0.00 0.00 4.26
478 479 2.079158 CAAGTCCACACGATGAATGCT 58.921 47.619 0.00 0.00 0.00 3.79
479 480 2.076100 TCAAGTCCACACGATGAATGC 58.924 47.619 0.00 0.00 0.00 3.56
480 481 2.092681 CGTCAAGTCCACACGATGAATG 59.907 50.000 0.00 0.00 35.49 2.67
481 482 2.337583 CGTCAAGTCCACACGATGAAT 58.662 47.619 0.00 0.00 35.49 2.57
482 483 1.778334 CGTCAAGTCCACACGATGAA 58.222 50.000 0.00 0.00 35.49 2.57
483 484 0.666274 GCGTCAAGTCCACACGATGA 60.666 55.000 0.00 0.00 35.49 2.92
577 579 5.591067 TCCTTTTGAGCCTTCGTTCTAAAAA 59.409 36.000 0.00 0.00 0.00 1.94
578 580 5.127491 TCCTTTTGAGCCTTCGTTCTAAAA 58.873 37.500 0.00 0.00 0.00 1.52
579 581 4.710324 TCCTTTTGAGCCTTCGTTCTAAA 58.290 39.130 0.00 0.00 0.00 1.85
580 582 4.345859 TCCTTTTGAGCCTTCGTTCTAA 57.654 40.909 0.00 0.00 0.00 2.10
581 583 4.345859 TTCCTTTTGAGCCTTCGTTCTA 57.654 40.909 0.00 0.00 0.00 2.10
582 584 2.930826 TCCTTTTGAGCCTTCGTTCT 57.069 45.000 0.00 0.00 0.00 3.01
583 585 3.119814 GGATTCCTTTTGAGCCTTCGTTC 60.120 47.826 0.00 0.00 0.00 3.95
584 586 2.820197 GGATTCCTTTTGAGCCTTCGTT 59.180 45.455 0.00 0.00 0.00 3.85
585 587 2.437413 GGATTCCTTTTGAGCCTTCGT 58.563 47.619 0.00 0.00 0.00 3.85
586 588 1.398390 CGGATTCCTTTTGAGCCTTCG 59.602 52.381 0.30 0.00 0.00 3.79
587 589 1.745653 CCGGATTCCTTTTGAGCCTTC 59.254 52.381 0.00 0.00 0.00 3.46
588 590 1.839424 CCGGATTCCTTTTGAGCCTT 58.161 50.000 0.00 0.00 0.00 4.35
589 591 0.681243 GCCGGATTCCTTTTGAGCCT 60.681 55.000 5.05 0.00 0.00 4.58
590 592 0.681243 AGCCGGATTCCTTTTGAGCC 60.681 55.000 5.05 0.00 0.00 4.70
591 593 1.177401 AAGCCGGATTCCTTTTGAGC 58.823 50.000 5.05 0.00 0.00 4.26
592 594 2.819608 TCAAAGCCGGATTCCTTTTGAG 59.180 45.455 4.89 0.00 0.00 3.02
593 595 2.870175 TCAAAGCCGGATTCCTTTTGA 58.130 42.857 4.89 16.45 0.00 2.69
594 596 3.658757 TTCAAAGCCGGATTCCTTTTG 57.341 42.857 4.89 0.00 0.00 2.44
595 597 4.890158 AATTCAAAGCCGGATTCCTTTT 57.110 36.364 4.89 0.00 0.00 2.27
596 598 5.245075 TGTTAATTCAAAGCCGGATTCCTTT 59.755 36.000 4.89 1.62 0.00 3.11
597 599 4.770010 TGTTAATTCAAAGCCGGATTCCTT 59.230 37.500 4.89 0.00 0.00 3.36
598 600 4.340617 TGTTAATTCAAAGCCGGATTCCT 58.659 39.130 4.89 0.00 0.00 3.36
599 601 4.712122 TGTTAATTCAAAGCCGGATTCC 57.288 40.909 4.89 0.00 0.00 3.01
600 602 6.632171 CTTTGTTAATTCAAAGCCGGATTC 57.368 37.500 4.89 0.00 44.57 2.52
609 611 5.694006 CGGTTGATGGCTTTGTTAATTCAAA 59.306 36.000 0.00 0.00 36.18 2.69
610 612 5.226396 CGGTTGATGGCTTTGTTAATTCAA 58.774 37.500 0.00 0.00 0.00 2.69
611 613 4.321601 CCGGTTGATGGCTTTGTTAATTCA 60.322 41.667 0.00 0.00 0.00 2.57
612 614 4.173256 CCGGTTGATGGCTTTGTTAATTC 58.827 43.478 0.00 0.00 0.00 2.17
613 615 4.186856 CCGGTTGATGGCTTTGTTAATT 57.813 40.909 0.00 0.00 0.00 1.40
614 616 3.866883 CCGGTTGATGGCTTTGTTAAT 57.133 42.857 0.00 0.00 0.00 1.40
624 626 0.182537 TAATCCTGGCCGGTTGATGG 59.817 55.000 11.58 0.00 0.00 3.51
625 627 1.308998 GTAATCCTGGCCGGTTGATG 58.691 55.000 11.58 0.00 0.00 3.07
626 628 0.916086 TGTAATCCTGGCCGGTTGAT 59.084 50.000 11.58 4.00 0.00 2.57
627 629 0.693622 TTGTAATCCTGGCCGGTTGA 59.306 50.000 11.58 1.27 0.00 3.18
628 630 0.808755 GTTGTAATCCTGGCCGGTTG 59.191 55.000 11.58 0.00 0.00 3.77
629 631 0.696501 AGTTGTAATCCTGGCCGGTT 59.303 50.000 11.58 1.23 0.00 4.44
630 632 0.696501 AAGTTGTAATCCTGGCCGGT 59.303 50.000 11.58 0.00 0.00 5.28
631 633 1.834188 AAAGTTGTAATCCTGGCCGG 58.166 50.000 3.88 3.88 0.00 6.13
632 634 5.576447 ATTTAAAGTTGTAATCCTGGCCG 57.424 39.130 0.00 0.00 0.00 6.13
633 635 7.832769 TGTTATTTAAAGTTGTAATCCTGGCC 58.167 34.615 0.00 0.00 0.00 5.36
634 636 9.516314 GATGTTATTTAAAGTTGTAATCCTGGC 57.484 33.333 0.00 0.00 0.00 4.85
643 645 9.877178 TTGGTGTTTGATGTTATTTAAAGTTGT 57.123 25.926 0.00 0.00 0.00 3.32
675 677 6.713792 AAACACACGTGCTGTTTTATTTTT 57.286 29.167 28.06 14.82 38.43 1.94
676 678 6.588373 AGAAAACACACGTGCTGTTTTATTTT 59.412 30.769 35.00 24.74 46.80 1.82
677 679 6.096695 AGAAAACACACGTGCTGTTTTATTT 58.903 32.000 35.00 27.02 46.80 1.40
678 680 5.646606 AGAAAACACACGTGCTGTTTTATT 58.353 33.333 35.00 28.43 46.80 1.40
679 681 5.243426 AGAAAACACACGTGCTGTTTTAT 57.757 34.783 35.00 32.27 46.80 1.40
680 682 4.688511 AGAAAACACACGTGCTGTTTTA 57.311 36.364 35.00 0.00 46.80 1.52
682 684 3.569250 AAGAAAACACACGTGCTGTTT 57.431 38.095 28.06 28.06 42.41 2.83
683 685 4.658071 CTTAAGAAAACACACGTGCTGTT 58.342 39.130 22.43 22.43 33.09 3.16
684 686 3.486875 GCTTAAGAAAACACACGTGCTGT 60.487 43.478 17.22 15.95 0.00 4.40
685 687 3.035942 GCTTAAGAAAACACACGTGCTG 58.964 45.455 17.22 15.28 0.00 4.41
686 688 2.286184 CGCTTAAGAAAACACACGTGCT 60.286 45.455 17.22 0.00 0.00 4.40
687 689 2.034076 CGCTTAAGAAAACACACGTGC 58.966 47.619 17.22 0.00 0.00 5.34
724 726 0.605319 CACGTACAACCCACATGGCT 60.605 55.000 0.00 0.00 37.83 4.75
811 813 2.975799 GAAAGGGTGGCGCAACGA 60.976 61.111 10.83 0.00 0.00 3.85
814 816 0.039035 ATTAGGAAAGGGTGGCGCAA 59.961 50.000 10.83 0.00 0.00 4.85
898 901 2.578021 CAAAGAAGAGAAGGGGATGGGA 59.422 50.000 0.00 0.00 0.00 4.37
1118 2306 4.778143 GCCCCTTGCCGTGACGAT 62.778 66.667 6.54 0.00 0.00 3.73
1428 2629 9.430399 AGATCAATCAAACTTATCCCAATCAAT 57.570 29.630 0.00 0.00 0.00 2.57
1631 2868 1.134670 GGCATGGAGTGGTCAGAGTAC 60.135 57.143 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.