Multiple sequence alignment - TraesCS4A01G277700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G277700 chr4A 100.000 4085 0 0 1 4085 585455231 585459315 0.000000e+00 7544
1 TraesCS4A01G277700 chr4D 88.213 1349 101 26 2378 3686 15354567 15353237 0.000000e+00 1557
2 TraesCS4A01G277700 chr4D 78.264 1509 186 91 572 2003 15356717 15355274 0.000000e+00 839
3 TraesCS4A01G277700 chr4D 95.729 398 16 1 3689 4085 15353281 15352884 1.240000e-179 640
4 TraesCS4A01G277700 chr4B 89.934 1212 61 22 2402 3562 25835565 25834364 0.000000e+00 1506
5 TraesCS4A01G277700 chr4B 81.616 1485 154 62 785 2221 25837088 25835675 0.000000e+00 1120
6 TraesCS4A01G277700 chr4B 91.444 561 46 2 1 559 604130024 604129464 0.000000e+00 769
7 TraesCS4A01G277700 chr4B 94.611 501 16 5 3595 4085 25834364 25833865 0.000000e+00 765
8 TraesCS4A01G277700 chrUn 96.250 560 21 0 1 560 329027733 329027174 0.000000e+00 918
9 TraesCS4A01G277700 chr3A 95.893 560 21 2 1 559 621627956 621628514 0.000000e+00 905
10 TraesCS4A01G277700 chr2D 95.552 562 21 3 1 559 640993262 640992702 0.000000e+00 896
11 TraesCS4A01G277700 chr6B 95.170 559 24 3 1 558 102080705 102080149 0.000000e+00 880
12 TraesCS4A01G277700 chr6B 90.909 561 46 4 1 559 712107112 712107669 0.000000e+00 749
13 TraesCS4A01G277700 chr2B 94.803 558 25 3 1 558 522093440 522093993 0.000000e+00 867
14 TraesCS4A01G277700 chr7B 94.306 562 28 3 1 559 237505880 237505320 0.000000e+00 857
15 TraesCS4A01G277700 chr3B 91.103 562 46 4 1 559 674679531 674680091 0.000000e+00 758


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G277700 chr4A 585455231 585459315 4084 False 7544.000000 7544 100.000000 1 4085 1 chr4A.!!$F1 4084
1 TraesCS4A01G277700 chr4D 15352884 15356717 3833 True 1012.000000 1557 87.402000 572 4085 3 chr4D.!!$R1 3513
2 TraesCS4A01G277700 chr4B 25833865 25837088 3223 True 1130.333333 1506 88.720333 785 4085 3 chr4B.!!$R2 3300
3 TraesCS4A01G277700 chr4B 604129464 604130024 560 True 769.000000 769 91.444000 1 559 1 chr4B.!!$R1 558
4 TraesCS4A01G277700 chrUn 329027174 329027733 559 True 918.000000 918 96.250000 1 560 1 chrUn.!!$R1 559
5 TraesCS4A01G277700 chr3A 621627956 621628514 558 False 905.000000 905 95.893000 1 559 1 chr3A.!!$F1 558
6 TraesCS4A01G277700 chr2D 640992702 640993262 560 True 896.000000 896 95.552000 1 559 1 chr2D.!!$R1 558
7 TraesCS4A01G277700 chr6B 102080149 102080705 556 True 880.000000 880 95.170000 1 558 1 chr6B.!!$R1 557
8 TraesCS4A01G277700 chr6B 712107112 712107669 557 False 749.000000 749 90.909000 1 559 1 chr6B.!!$F1 558
9 TraesCS4A01G277700 chr2B 522093440 522093993 553 False 867.000000 867 94.803000 1 558 1 chr2B.!!$F1 557
10 TraesCS4A01G277700 chr7B 237505320 237505880 560 True 857.000000 857 94.306000 1 559 1 chr7B.!!$R1 558
11 TraesCS4A01G277700 chr3B 674679531 674680091 560 False 758.000000 758 91.103000 1 559 1 chr3B.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 489 0.102663 GGTTTTCGCCCGTTTTTCCA 59.897 50.0 0.00 0.00 0.00 3.53 F
1260 1336 0.106669 TCGATCTGACCCGATCTGGT 60.107 55.0 8.78 8.78 42.79 4.00 F
1540 1637 0.315568 ATAGGCGAATGCTCGGTCTC 59.684 55.0 0.00 0.00 45.55 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1512 0.178873 AGAAACCAGGGCTGAGGGTA 60.179 55.0 0.00 0.0 33.71 3.69 R
2563 3264 0.035739 GAAAAGGTGGCACGGAGGTA 59.964 55.0 12.17 0.0 0.00 3.08 R
3337 4066 0.605083 TCTCAGCATCGACAACAGCT 59.395 50.0 0.00 0.0 37.95 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 4.201812 CGAAAGAACTTTGTGACTTGCTCA 60.202 41.667 4.48 0.00 32.11 4.26
158 159 1.824852 TCGATAGCTTGCCTTCTGACA 59.175 47.619 0.00 0.00 0.00 3.58
247 248 0.674581 CTGGCTGCTTGATGGACGAA 60.675 55.000 0.00 0.00 0.00 3.85
251 252 1.135859 GCTGCTTGATGGACGAACTTG 60.136 52.381 0.00 0.00 0.00 3.16
284 285 1.003118 CGTCCTCTTGGATTGGGTCAA 59.997 52.381 0.00 0.00 45.29 3.18
484 489 0.102663 GGTTTTCGCCCGTTTTTCCA 59.897 50.000 0.00 0.00 0.00 3.53
579 590 6.358974 AAAGCCAATGCCTTGTTAATACTT 57.641 33.333 0.91 0.00 38.69 2.24
580 591 5.582689 AGCCAATGCCTTGTTAATACTTC 57.417 39.130 0.91 0.00 38.69 3.01
583 594 5.331902 CCAATGCCTTGTTAATACTTCACG 58.668 41.667 0.91 0.00 0.00 4.35
591 602 6.572254 CCTTGTTAATACTTCACGAAACAACG 59.428 38.462 0.00 0.00 34.27 4.10
594 605 2.886862 TACTTCACGAAACAACGGGA 57.113 45.000 0.00 0.00 44.02 5.14
595 606 1.578583 ACTTCACGAAACAACGGGAG 58.421 50.000 0.00 0.00 46.17 4.30
601 612 1.841663 CGAAACAACGGGAGCACCAG 61.842 60.000 1.58 0.00 40.22 4.00
606 617 0.310854 CAACGGGAGCACCAGAAAAC 59.689 55.000 7.41 0.00 40.22 2.43
698 713 4.950205 ACTTTTAGTTTCCTGTCGGAGA 57.050 40.909 0.00 0.00 41.25 3.71
703 718 0.511653 GTTTCCTGTCGGAGAAACGC 59.488 55.000 5.83 0.00 41.58 4.84
709 724 0.874175 TGTCGGAGAAACGCACACAG 60.874 55.000 0.00 0.00 39.69 3.66
710 725 0.874607 GTCGGAGAAACGCACACAGT 60.875 55.000 0.00 0.00 39.69 3.55
712 727 1.067364 TCGGAGAAACGCACACAGTTA 59.933 47.619 0.00 0.00 0.00 2.24
713 728 1.862201 CGGAGAAACGCACACAGTTAA 59.138 47.619 0.00 0.00 0.00 2.01
767 812 2.159000 ACAGGCCTGTAAGTAATACCGC 60.159 50.000 37.12 0.00 42.90 5.68
803 848 4.421515 CCAGCCCAGCCCACTCAG 62.422 72.222 0.00 0.00 0.00 3.35
814 859 2.125350 CACTCAGAGGCCCGAAGC 60.125 66.667 0.00 0.00 42.60 3.86
865 914 1.760479 TTTCTTGGGACCGAAGCCGA 61.760 55.000 11.21 0.00 38.22 5.54
866 915 1.760479 TTCTTGGGACCGAAGCCGAA 61.760 55.000 11.21 0.00 38.22 4.30
876 925 1.153804 GAAGCCGAACTCGACTCCC 60.154 63.158 0.00 0.00 43.02 4.30
877 926 2.560051 GAAGCCGAACTCGACTCCCC 62.560 65.000 0.00 0.00 43.02 4.81
878 927 4.493747 GCCGAACTCGACTCCCCG 62.494 72.222 0.00 0.00 43.02 5.73
879 928 3.060615 CCGAACTCGACTCCCCGT 61.061 66.667 0.00 0.00 43.02 5.28
880 929 2.484203 CGAACTCGACTCCCCGTC 59.516 66.667 0.00 0.00 43.02 4.79
881 930 2.883621 GAACTCGACTCCCCGTCC 59.116 66.667 0.00 0.00 39.56 4.79
882 931 1.678300 GAACTCGACTCCCCGTCCT 60.678 63.158 0.00 0.00 39.56 3.85
883 932 1.935327 GAACTCGACTCCCCGTCCTG 61.935 65.000 0.00 0.00 39.56 3.86
884 933 3.827898 CTCGACTCCCCGTCCTGC 61.828 72.222 0.00 0.00 39.56 4.85
914 965 1.203199 TCCCCCAAATACAACCAACCC 60.203 52.381 0.00 0.00 0.00 4.11
934 985 4.785512 CTCGCCGTCTGCTCGCTT 62.786 66.667 0.00 0.00 38.05 4.68
1174 1232 2.675371 GGTAAGCACCTCACCCCC 59.325 66.667 0.00 0.00 42.11 5.40
1175 1233 2.267961 GTAAGCACCTCACCCCCG 59.732 66.667 0.00 0.00 0.00 5.73
1237 1295 2.402572 GCTCCAGGCTCGCCTTTTC 61.403 63.158 7.93 0.00 45.70 2.29
1238 1296 1.298014 CTCCAGGCTCGCCTTTTCT 59.702 57.895 7.93 0.00 45.70 2.52
1239 1297 1.003355 TCCAGGCTCGCCTTTTCTG 60.003 57.895 7.93 0.00 45.70 3.02
1260 1336 0.106669 TCGATCTGACCCGATCTGGT 60.107 55.000 8.78 8.78 42.79 4.00
1262 1338 1.269309 CGATCTGACCCGATCTGGTTC 60.269 57.143 10.46 3.21 39.24 3.62
1288 1373 3.853698 TTTTTCCTGGGGGTCGGCG 62.854 63.158 0.00 0.00 0.00 6.46
1431 1516 2.895372 CGCAAGGTGCCGATACCC 60.895 66.667 4.67 0.00 41.12 3.69
1432 1517 2.590092 GCAAGGTGCCGATACCCT 59.410 61.111 4.67 0.00 41.83 4.34
1441 1526 2.511452 CCGATACCCTCAGCCCTGG 61.511 68.421 0.00 0.00 0.00 4.45
1471 1564 2.645838 ACTGTTCTGCTGTGGATTGT 57.354 45.000 0.00 0.00 0.00 2.71
1473 1566 2.105477 ACTGTTCTGCTGTGGATTGTCT 59.895 45.455 0.00 0.00 0.00 3.41
1502 1599 2.073101 CAGGGAGGGGCTAGGGTTC 61.073 68.421 0.00 0.00 0.00 3.62
1512 1609 1.965219 CTAGGGTTCGCTATCCCCG 59.035 63.158 0.75 0.00 44.40 5.73
1536 1633 2.654749 TATCATAGGCGAATGCTCGG 57.345 50.000 0.00 0.00 45.55 4.63
1540 1637 0.315568 ATAGGCGAATGCTCGGTCTC 59.684 55.000 0.00 0.00 45.55 3.36
1553 1650 2.737376 GTCTCACACCGGTTCCGC 60.737 66.667 2.97 0.00 0.00 5.54
1605 1735 2.631062 TGGTGTAGACCTGTTGTTCGAT 59.369 45.455 10.86 0.00 43.58 3.59
1631 1765 3.632643 ATGTGATTGGGGATTTTTGCC 57.367 42.857 0.00 0.00 0.00 4.52
1650 1784 2.946791 GCCGACTTAAATGGGGGCTTAA 60.947 50.000 0.00 0.00 37.57 1.85
1656 1790 2.342406 AAATGGGGGCTTAAGGCTTT 57.658 45.000 26.23 16.48 41.46 3.51
1657 1791 3.483255 AAATGGGGGCTTAAGGCTTTA 57.517 42.857 26.23 13.94 41.46 1.85
1658 1792 2.454336 ATGGGGGCTTAAGGCTTTAC 57.546 50.000 26.23 15.01 41.46 2.01
1659 1793 0.333652 TGGGGGCTTAAGGCTTTACC 59.666 55.000 26.23 21.69 41.46 2.85
1660 1794 0.396695 GGGGGCTTAAGGCTTTACCC 60.397 60.000 26.23 23.03 40.58 3.69
1691 1828 6.104665 AGCCTTGTAGGTTTCTTATTCGTAC 58.895 40.000 0.00 0.00 37.80 3.67
1714 1851 9.582431 GTACTTACAGTTTGCTGATGAATACTA 57.418 33.333 1.30 0.00 45.28 1.82
1716 1853 9.672673 ACTTACAGTTTGCTGATGAATACTATT 57.327 29.630 1.30 0.00 45.28 1.73
1725 1862 8.648557 TGCTGATGAATACTATTGTCTGTTAC 57.351 34.615 0.00 0.00 0.00 2.50
1740 1877 7.441890 TGTCTGTTACTTCTTTGTCAAACAA 57.558 32.000 0.00 0.00 36.11 2.83
1748 1885 9.712305 TTACTTCTTTGTCAAACAATTTTTGGA 57.288 25.926 0.00 0.00 38.00 3.53
1761 1900 7.707774 ACAATTTTTGGAAAATTAGTGTCCG 57.292 32.000 10.12 1.64 33.87 4.79
1762 1901 7.269316 ACAATTTTTGGAAAATTAGTGTCCGT 58.731 30.769 10.12 2.13 33.87 4.69
1763 1902 7.223777 ACAATTTTTGGAAAATTAGTGTCCGTG 59.776 33.333 10.12 1.03 33.87 4.94
1765 1904 5.838531 TTTGGAAAATTAGTGTCCGTGTT 57.161 34.783 0.00 0.00 33.87 3.32
1766 1905 6.939132 TTTGGAAAATTAGTGTCCGTGTTA 57.061 33.333 0.00 0.00 33.87 2.41
1767 1906 5.927954 TGGAAAATTAGTGTCCGTGTTAC 57.072 39.130 0.00 0.00 33.87 2.50
1773 1912 7.966246 AAATTAGTGTCCGTGTTACATACAA 57.034 32.000 0.00 0.00 38.80 2.41
1774 1913 6.956299 ATTAGTGTCCGTGTTACATACAAC 57.044 37.500 0.00 0.00 38.80 3.32
1787 1926 7.173562 GTGTTACATACAACCCTGTGTTTATGA 59.826 37.037 9.94 0.00 38.80 2.15
1789 1928 5.876357 ACATACAACCCTGTGTTTATGACT 58.124 37.500 9.94 0.00 36.96 3.41
1790 1929 6.303839 ACATACAACCCTGTGTTTATGACTT 58.696 36.000 9.94 0.00 36.96 3.01
1791 1930 7.455058 ACATACAACCCTGTGTTTATGACTTA 58.545 34.615 9.94 0.00 36.96 2.24
1792 1931 8.107095 ACATACAACCCTGTGTTTATGACTTAT 58.893 33.333 9.94 0.00 36.96 1.73
1793 1932 6.817765 ACAACCCTGTGTTTATGACTTATG 57.182 37.500 0.00 0.00 34.00 1.90
1794 1933 6.303839 ACAACCCTGTGTTTATGACTTATGT 58.696 36.000 0.00 0.00 34.00 2.29
1795 1934 6.775629 ACAACCCTGTGTTTATGACTTATGTT 59.224 34.615 0.00 0.00 34.00 2.71
1796 1935 7.940137 ACAACCCTGTGTTTATGACTTATGTTA 59.060 33.333 0.00 0.00 34.00 2.41
1797 1936 8.450964 CAACCCTGTGTTTATGACTTATGTTAG 58.549 37.037 0.00 0.00 34.00 2.34
1798 1937 7.686434 ACCCTGTGTTTATGACTTATGTTAGT 58.314 34.615 0.00 0.00 0.00 2.24
1815 1954 9.781834 TTATGTTAGTTTTAAATCGATGCCAAG 57.218 29.630 0.00 0.00 0.00 3.61
1839 1980 5.163405 GCAGAACCTCTGTACATTAGATGGA 60.163 44.000 0.00 0.00 45.94 3.41
1853 1996 8.915057 ACATTAGATGGAATTCCTCAACTATG 57.085 34.615 24.73 19.98 36.82 2.23
1855 1998 8.781196 CATTAGATGGAATTCCTCAACTATGTG 58.219 37.037 24.73 16.72 36.82 3.21
1876 2019 2.372264 CTGCATATGGGCTTCAACTGT 58.628 47.619 4.56 0.00 34.04 3.55
1880 2023 3.445096 GCATATGGGCTTCAACTGTTTCT 59.555 43.478 4.56 0.00 0.00 2.52
1883 2026 2.575532 TGGGCTTCAACTGTTTCTGAG 58.424 47.619 0.00 0.00 0.00 3.35
1887 2030 3.823304 GGCTTCAACTGTTTCTGAGGATT 59.177 43.478 0.00 0.00 0.00 3.01
1892 2035 8.084684 GCTTCAACTGTTTCTGAGGATTATTTT 58.915 33.333 0.00 0.00 0.00 1.82
1946 2090 8.764287 GGTTTTAAGTTGATTTCATGTTTCCAG 58.236 33.333 0.00 0.00 0.00 3.86
1949 2093 4.874970 AGTTGATTTCATGTTTCCAGCAC 58.125 39.130 0.00 0.00 0.00 4.40
1951 2095 5.769662 AGTTGATTTCATGTTTCCAGCACTA 59.230 36.000 0.00 0.00 0.00 2.74
1957 2101 2.672961 TGTTTCCAGCACTAGGATCG 57.327 50.000 0.00 0.00 34.56 3.69
1959 2103 3.093814 TGTTTCCAGCACTAGGATCGTA 58.906 45.455 0.00 0.00 34.56 3.43
1980 2596 8.498192 TCGTAGAGCAACGATACATTAATAAC 57.502 34.615 5.05 0.00 46.29 1.89
1985 2601 6.715464 AGCAACGATACATTAATAACACAGC 58.285 36.000 0.00 0.00 0.00 4.40
2029 2658 6.099701 ACCTATGAATTGTGTAGTGCCTATGA 59.900 38.462 0.00 0.00 0.00 2.15
2032 2661 9.881649 CTATGAATTGTGTAGTGCCTATGATAT 57.118 33.333 0.00 0.00 0.00 1.63
2048 2677 6.769822 CCTATGATATTGCACCTTCTGAACTT 59.230 38.462 0.00 0.00 0.00 2.66
2049 2678 6.690194 ATGATATTGCACCTTCTGAACTTC 57.310 37.500 0.00 0.00 0.00 3.01
2054 2683 4.431416 TGCACCTTCTGAACTTCCTTTA 57.569 40.909 0.00 0.00 0.00 1.85
2055 2684 4.985538 TGCACCTTCTGAACTTCCTTTAT 58.014 39.130 0.00 0.00 0.00 1.40
2090 2719 7.051000 TGACCATTTGTTCATATTATGGACGA 58.949 34.615 9.95 5.88 41.85 4.20
2091 2720 7.554476 TGACCATTTGTTCATATTATGGACGAA 59.446 33.333 16.76 16.76 44.26 3.85
2093 2722 8.567948 ACCATTTGTTCATATTATGGACGAATC 58.432 33.333 20.92 0.00 45.62 2.52
2097 2726 7.189693 TGTTCATATTATGGACGAATCTTGC 57.810 36.000 9.95 0.00 41.85 4.01
2098 2727 6.765512 TGTTCATATTATGGACGAATCTTGCA 59.234 34.615 9.95 0.00 41.85 4.08
2099 2728 7.281999 TGTTCATATTATGGACGAATCTTGCAA 59.718 33.333 9.95 0.00 41.85 4.08
2100 2729 7.189693 TCATATTATGGACGAATCTTGCAAC 57.810 36.000 0.00 0.00 0.00 4.17
2102 2731 4.678509 TTATGGACGAATCTTGCAACAC 57.321 40.909 0.00 0.00 0.00 3.32
2107 2736 3.003275 GGACGAATCTTGCAACACTTGAA 59.997 43.478 0.00 0.00 0.00 2.69
2206 2839 6.974932 AATGCTGTTTCACTGTATAGTCAG 57.025 37.500 2.75 2.75 40.80 3.51
2210 2843 7.836842 TGCTGTTTCACTGTATAGTCAGATTA 58.163 34.615 9.38 0.00 38.63 1.75
2244 2904 5.909621 AAACTTGACATGATTCCTGATGG 57.090 39.130 0.00 0.00 0.00 3.51
2245 2905 4.849813 ACTTGACATGATTCCTGATGGA 57.150 40.909 0.00 0.00 41.36 3.41
2246 2906 4.521146 ACTTGACATGATTCCTGATGGAC 58.479 43.478 0.00 0.00 43.06 4.02
2248 2908 3.117745 TGACATGATTCCTGATGGACCT 58.882 45.455 0.00 0.00 43.06 3.85
2249 2909 3.524789 TGACATGATTCCTGATGGACCTT 59.475 43.478 0.00 0.00 43.06 3.50
2250 2910 3.881688 GACATGATTCCTGATGGACCTTG 59.118 47.826 0.00 0.00 43.06 3.61
2251 2911 3.524789 ACATGATTCCTGATGGACCTTGA 59.475 43.478 0.00 0.00 43.06 3.02
2252 2912 3.920231 TGATTCCTGATGGACCTTGAG 57.080 47.619 0.00 0.00 43.06 3.02
2253 2913 3.184628 TGATTCCTGATGGACCTTGAGT 58.815 45.455 0.00 0.00 43.06 3.41
2254 2914 3.054875 TGATTCCTGATGGACCTTGAGTG 60.055 47.826 0.00 0.00 43.06 3.51
2255 2915 0.615331 TCCTGATGGACCTTGAGTGC 59.385 55.000 0.00 0.00 37.46 4.40
2256 2916 0.617413 CCTGATGGACCTTGAGTGCT 59.383 55.000 0.00 0.00 37.77 4.40
2257 2917 1.678123 CCTGATGGACCTTGAGTGCTG 60.678 57.143 0.00 0.00 37.77 4.41
2258 2918 1.002888 CTGATGGACCTTGAGTGCTGT 59.997 52.381 0.00 0.00 37.77 4.40
2259 2919 1.002430 TGATGGACCTTGAGTGCTGTC 59.998 52.381 0.00 0.00 37.77 3.51
2260 2920 1.277557 GATGGACCTTGAGTGCTGTCT 59.722 52.381 0.00 0.00 37.77 3.41
2261 2921 1.131638 TGGACCTTGAGTGCTGTCTT 58.868 50.000 0.00 0.00 37.77 3.01
2262 2922 1.490490 TGGACCTTGAGTGCTGTCTTT 59.510 47.619 0.00 0.00 37.77 2.52
2263 2923 1.876156 GGACCTTGAGTGCTGTCTTTG 59.124 52.381 0.00 0.00 33.19 2.77
2264 2924 2.565841 GACCTTGAGTGCTGTCTTTGT 58.434 47.619 0.00 0.00 0.00 2.83
2265 2925 2.945668 GACCTTGAGTGCTGTCTTTGTT 59.054 45.455 0.00 0.00 0.00 2.83
2266 2926 2.684881 ACCTTGAGTGCTGTCTTTGTTG 59.315 45.455 0.00 0.00 0.00 3.33
2267 2927 2.542411 CCTTGAGTGCTGTCTTTGTTGC 60.542 50.000 0.00 0.00 0.00 4.17
2268 2928 2.042686 TGAGTGCTGTCTTTGTTGCT 57.957 45.000 0.00 0.00 0.00 3.91
2269 2929 2.368439 TGAGTGCTGTCTTTGTTGCTT 58.632 42.857 0.00 0.00 0.00 3.91
2270 2930 2.097954 TGAGTGCTGTCTTTGTTGCTTG 59.902 45.455 0.00 0.00 0.00 4.01
2271 2931 2.094675 AGTGCTGTCTTTGTTGCTTGT 58.905 42.857 0.00 0.00 0.00 3.16
2272 2932 3.278574 AGTGCTGTCTTTGTTGCTTGTA 58.721 40.909 0.00 0.00 0.00 2.41
2273 2933 3.885297 AGTGCTGTCTTTGTTGCTTGTAT 59.115 39.130 0.00 0.00 0.00 2.29
2274 2934 4.339247 AGTGCTGTCTTTGTTGCTTGTATT 59.661 37.500 0.00 0.00 0.00 1.89
2275 2935 4.442073 GTGCTGTCTTTGTTGCTTGTATTG 59.558 41.667 0.00 0.00 0.00 1.90
2276 2936 4.097741 TGCTGTCTTTGTTGCTTGTATTGT 59.902 37.500 0.00 0.00 0.00 2.71
2277 2937 5.298026 TGCTGTCTTTGTTGCTTGTATTGTA 59.702 36.000 0.00 0.00 0.00 2.41
2278 2938 5.853282 GCTGTCTTTGTTGCTTGTATTGTAG 59.147 40.000 0.00 0.00 0.00 2.74
2279 2939 6.293407 GCTGTCTTTGTTGCTTGTATTGTAGA 60.293 38.462 0.00 0.00 0.00 2.59
2280 2940 7.573843 GCTGTCTTTGTTGCTTGTATTGTAGAT 60.574 37.037 0.00 0.00 0.00 1.98
2281 2941 8.165239 TGTCTTTGTTGCTTGTATTGTAGATT 57.835 30.769 0.00 0.00 0.00 2.40
2282 2942 8.075574 TGTCTTTGTTGCTTGTATTGTAGATTG 58.924 33.333 0.00 0.00 0.00 2.67
2283 2943 8.289618 GTCTTTGTTGCTTGTATTGTAGATTGA 58.710 33.333 0.00 0.00 0.00 2.57
2284 2944 9.013229 TCTTTGTTGCTTGTATTGTAGATTGAT 57.987 29.630 0.00 0.00 0.00 2.57
2285 2945 9.630098 CTTTGTTGCTTGTATTGTAGATTGATT 57.370 29.630 0.00 0.00 0.00 2.57
2286 2946 9.624697 TTTGTTGCTTGTATTGTAGATTGATTC 57.375 29.630 0.00 0.00 0.00 2.52
2287 2947 8.334263 TGTTGCTTGTATTGTAGATTGATTCA 57.666 30.769 0.00 0.00 0.00 2.57
2288 2948 8.959548 TGTTGCTTGTATTGTAGATTGATTCAT 58.040 29.630 0.00 0.00 0.00 2.57
2289 2949 9.793252 GTTGCTTGTATTGTAGATTGATTCATT 57.207 29.630 0.00 0.00 0.00 2.57
2318 2978 9.527566 CAAAAATTTGTTGTTTACACTTGTGAG 57.472 29.630 7.83 0.00 36.21 3.51
2319 2979 9.482627 AAAAATTTGTTGTTTACACTTGTGAGA 57.517 25.926 7.83 0.00 36.21 3.27
2320 2980 9.482627 AAAATTTGTTGTTTACACTTGTGAGAA 57.517 25.926 7.83 0.00 36.21 2.87
2321 2981 9.651913 AAATTTGTTGTTTACACTTGTGAGAAT 57.348 25.926 7.83 0.00 36.21 2.40
2322 2982 9.651913 AATTTGTTGTTTACACTTGTGAGAATT 57.348 25.926 7.83 0.00 36.21 2.17
2323 2983 8.682128 TTTGTTGTTTACACTTGTGAGAATTC 57.318 30.769 7.83 0.00 36.21 2.17
2324 2984 7.384439 TGTTGTTTACACTTGTGAGAATTCA 57.616 32.000 8.44 0.00 0.00 2.57
2325 2985 7.995289 TGTTGTTTACACTTGTGAGAATTCAT 58.005 30.769 8.44 0.00 35.39 2.57
2326 2986 7.914871 TGTTGTTTACACTTGTGAGAATTCATG 59.085 33.333 8.44 0.00 35.39 3.07
2327 2987 7.566760 TGTTTACACTTGTGAGAATTCATGT 57.433 32.000 8.44 3.16 35.39 3.21
2328 2988 7.416817 TGTTTACACTTGTGAGAATTCATGTG 58.583 34.615 8.44 8.47 37.62 3.21
2329 2989 7.281999 TGTTTACACTTGTGAGAATTCATGTGA 59.718 33.333 8.44 0.00 36.41 3.58
2330 2990 7.800155 TTACACTTGTGAGAATTCATGTGAA 57.200 32.000 8.44 0.00 36.41 3.18
2331 2991 6.064846 ACACTTGTGAGAATTCATGTGAAC 57.935 37.500 8.44 0.00 36.80 3.18
2332 2992 5.142265 CACTTGTGAGAATTCATGTGAACG 58.858 41.667 8.44 0.00 36.80 3.95
2333 2993 5.050159 CACTTGTGAGAATTCATGTGAACGA 60.050 40.000 8.44 0.00 36.80 3.85
2334 2994 5.178252 ACTTGTGAGAATTCATGTGAACGAG 59.822 40.000 8.44 7.76 36.80 4.18
2335 2995 3.996363 TGTGAGAATTCATGTGAACGAGG 59.004 43.478 8.44 0.00 36.80 4.63
2336 2996 3.997021 GTGAGAATTCATGTGAACGAGGT 59.003 43.478 8.44 0.00 36.80 3.85
2337 2997 5.168569 GTGAGAATTCATGTGAACGAGGTA 58.831 41.667 8.44 0.00 36.80 3.08
2338 2998 5.289675 GTGAGAATTCATGTGAACGAGGTAG 59.710 44.000 8.44 0.00 36.80 3.18
2339 2999 4.184629 AGAATTCATGTGAACGAGGTAGC 58.815 43.478 8.44 0.00 36.80 3.58
2340 3000 3.610040 ATTCATGTGAACGAGGTAGCA 57.390 42.857 0.00 0.00 36.80 3.49
2341 3001 3.610040 TTCATGTGAACGAGGTAGCAT 57.390 42.857 0.00 0.00 0.00 3.79
2342 3002 3.610040 TCATGTGAACGAGGTAGCATT 57.390 42.857 0.00 0.00 0.00 3.56
2343 3003 3.937814 TCATGTGAACGAGGTAGCATTT 58.062 40.909 0.00 0.00 0.00 2.32
2344 3004 4.323417 TCATGTGAACGAGGTAGCATTTT 58.677 39.130 0.00 0.00 0.00 1.82
2345 3005 5.483811 TCATGTGAACGAGGTAGCATTTTA 58.516 37.500 0.00 0.00 0.00 1.52
2346 3006 5.580691 TCATGTGAACGAGGTAGCATTTTAG 59.419 40.000 0.00 0.00 0.00 1.85
2347 3007 5.142061 TGTGAACGAGGTAGCATTTTAGA 57.858 39.130 0.00 0.00 0.00 2.10
2348 3008 5.168569 TGTGAACGAGGTAGCATTTTAGAG 58.831 41.667 0.00 0.00 0.00 2.43
2349 3009 5.047590 TGTGAACGAGGTAGCATTTTAGAGA 60.048 40.000 0.00 0.00 0.00 3.10
2350 3010 5.517054 GTGAACGAGGTAGCATTTTAGAGAG 59.483 44.000 0.00 0.00 0.00 3.20
2351 3011 4.657436 ACGAGGTAGCATTTTAGAGAGG 57.343 45.455 0.00 0.00 0.00 3.69
2352 3012 3.385111 ACGAGGTAGCATTTTAGAGAGGG 59.615 47.826 0.00 0.00 0.00 4.30
2353 3013 3.637229 CGAGGTAGCATTTTAGAGAGGGA 59.363 47.826 0.00 0.00 0.00 4.20
2354 3014 4.282195 CGAGGTAGCATTTTAGAGAGGGAT 59.718 45.833 0.00 0.00 0.00 3.85
2355 3015 5.546526 GAGGTAGCATTTTAGAGAGGGATG 58.453 45.833 0.00 0.00 0.00 3.51
2356 3016 4.971924 AGGTAGCATTTTAGAGAGGGATGT 59.028 41.667 0.00 0.00 0.00 3.06
2357 3017 5.430089 AGGTAGCATTTTAGAGAGGGATGTT 59.570 40.000 0.00 0.00 0.00 2.71
2358 3018 6.069381 AGGTAGCATTTTAGAGAGGGATGTTT 60.069 38.462 0.00 0.00 0.00 2.83
2359 3019 6.603599 GGTAGCATTTTAGAGAGGGATGTTTT 59.396 38.462 0.00 0.00 0.00 2.43
2397 3091 0.771127 AAGGAAGCAAGTACAGGGCA 59.229 50.000 0.00 0.00 0.00 5.36
2400 3094 1.278127 GGAAGCAAGTACAGGGCACTA 59.722 52.381 0.00 0.00 0.00 2.74
2435 3133 1.886542 GTTGTTTGGCTCCTAGTTGGG 59.113 52.381 0.00 0.00 36.20 4.12
2436 3134 1.440618 TGTTTGGCTCCTAGTTGGGA 58.559 50.000 0.00 0.00 36.20 4.37
2464 3162 9.436957 TTTATTAGAAAGAGAAATCTTCGCTGT 57.563 29.630 0.00 0.00 39.82 4.40
2468 3166 7.532682 AGAAAGAGAAATCTTCGCTGTAATC 57.467 36.000 0.00 0.00 39.82 1.75
2497 3195 7.659390 CAGATTAAGAACTCCTGATATTCACCC 59.341 40.741 0.00 0.00 0.00 4.61
2520 3218 1.134670 GGCTTGAGCTACACCACCTAG 60.135 57.143 2.66 0.00 41.70 3.02
2528 3226 2.698797 GCTACACCACCTAGCTATTCCA 59.301 50.000 0.00 0.00 34.82 3.53
2535 3233 4.949856 ACCACCTAGCTATTCCAATTTGTG 59.050 41.667 0.00 0.00 0.00 3.33
2538 3236 5.882557 CACCTAGCTATTCCAATTTGTGACT 59.117 40.000 0.00 0.00 0.00 3.41
2556 3254 9.593134 TTTGTGACTTAATTGCATTTACTTTGT 57.407 25.926 0.59 0.00 0.00 2.83
2557 3255 8.572828 TGTGACTTAATTGCATTTACTTTGTG 57.427 30.769 0.59 0.00 0.00 3.33
2558 3256 7.651304 TGTGACTTAATTGCATTTACTTTGTGG 59.349 33.333 0.59 0.00 0.00 4.17
2563 3264 5.789643 ATTGCATTTACTTTGTGGTCAGT 57.210 34.783 0.00 0.00 0.00 3.41
2599 3300 5.221641 ACCTTTTCCATTTGCCTTAGTTTCC 60.222 40.000 0.00 0.00 0.00 3.13
2600 3301 5.221621 CCTTTTCCATTTGCCTTAGTTTCCA 60.222 40.000 0.00 0.00 0.00 3.53
2601 3302 4.864704 TTCCATTTGCCTTAGTTTCCAC 57.135 40.909 0.00 0.00 0.00 4.02
2606 3308 4.431416 TTTGCCTTAGTTTCCACTGAGA 57.569 40.909 0.00 0.00 38.65 3.27
2612 3321 6.439375 TGCCTTAGTTTCCACTGAGATTACTA 59.561 38.462 0.00 0.00 38.65 1.82
2613 3322 6.981559 GCCTTAGTTTCCACTGAGATTACTAG 59.018 42.308 0.00 0.00 38.65 2.57
2622 3331 5.590663 CCACTGAGATTACTAGTGTAGAGCA 59.409 44.000 5.39 0.00 40.04 4.26
2636 3345 6.396459 GTGTAGAGCACTAGTTGAATTCAC 57.604 41.667 7.89 3.85 44.41 3.18
2638 3347 4.623932 AGAGCACTAGTTGAATTCACCA 57.376 40.909 7.89 0.00 0.00 4.17
2639 3348 4.573900 AGAGCACTAGTTGAATTCACCAG 58.426 43.478 7.89 7.99 0.00 4.00
2640 3349 3.077359 AGCACTAGTTGAATTCACCAGC 58.923 45.455 7.89 6.97 0.00 4.85
2641 3350 2.813754 GCACTAGTTGAATTCACCAGCA 59.186 45.455 7.89 0.00 0.00 4.41
2660 3369 5.747197 CCAGCAGCATCATTAACTGATTTTC 59.253 40.000 0.00 0.00 42.07 2.29
2669 3378 8.564312 ATCATTAACTGATTTTCGTGGCGACG 62.564 42.308 15.72 15.72 42.07 5.12
2701 3423 7.409697 TCTTTTTCTCTTGACAATTTCTGACG 58.590 34.615 0.00 0.00 0.00 4.35
2769 3492 7.118723 TCATACTTGCAGGGTTTGATAAAGAT 58.881 34.615 0.00 0.00 0.00 2.40
2805 3528 5.570234 TGTACTACATTGACTACATCGCA 57.430 39.130 0.00 0.00 0.00 5.10
2817 3540 1.163420 ACATCGCAACGCTCCACAAA 61.163 50.000 0.00 0.00 0.00 2.83
2820 3543 0.665835 TCGCAACGCTCCACAAAATT 59.334 45.000 0.00 0.00 0.00 1.82
3027 3750 3.082548 GGACTATGCTAGGCGTGAGATA 58.917 50.000 0.00 0.00 33.43 1.98
3047 3770 1.476007 GGAGGTGACAGTCCTGCAGT 61.476 60.000 13.81 0.00 41.89 4.40
3135 3858 1.075659 GCTGGAGGCTGAACCCTTT 59.924 57.895 0.00 0.00 40.58 3.11
3151 3874 6.381420 TGAACCCTTTCTGTTAATTGTTTCCA 59.619 34.615 0.00 0.00 32.36 3.53
3337 4066 3.673902 TGCTGCTGCTTATTACTGTTGA 58.326 40.909 17.00 0.00 40.48 3.18
3546 4308 7.782049 TGGGATTGTTACTCTTGTACTCTATG 58.218 38.462 0.00 0.00 0.00 2.23
3584 4346 2.946990 GGAACGGGAAGAAACACTTTCA 59.053 45.455 0.00 0.00 42.10 2.69
3592 4354 6.036470 GGGAAGAAACACTTTCAAGAAACAG 58.964 40.000 0.00 0.00 42.10 3.16
3648 4410 8.352201 TCGTTTCTTCATGAATGTTTCTTGATT 58.648 29.630 8.96 0.00 41.58 2.57
3675 4437 9.194972 TGATTCATAGTGGTAAATAAAATGCCA 57.805 29.630 0.00 0.00 0.00 4.92
3687 4449 1.231221 AAATGCCACGCGACAAACTA 58.769 45.000 15.93 0.00 0.00 2.24
3790 4552 2.685897 TGCTTACAAACTTGGGTCACAC 59.314 45.455 0.00 0.00 0.00 3.82
3844 4606 1.743958 AGATTCTGAATGCTGTGCTGC 59.256 47.619 7.78 0.00 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 1.136828 TTAGCAACCTCCACACTGGT 58.863 50.000 0.00 0.00 39.03 4.00
158 159 1.527370 GCCTCTTATTGGCGTCCCT 59.473 57.895 0.00 0.00 41.03 4.20
224 225 1.134159 GTCCATCAAGCAGCCAGAGAT 60.134 52.381 0.00 0.00 0.00 2.75
247 248 2.344203 CGGGCCGAGAGACTCAAGT 61.344 63.158 24.41 0.00 0.00 3.16
251 252 3.519930 GGACGGGCCGAGAGACTC 61.520 72.222 35.78 18.44 0.00 3.36
284 285 1.099689 CACCTTTCAACCCACAACGT 58.900 50.000 0.00 0.00 0.00 3.99
527 538 3.893326 AACAGAGGCAAAAGTTTTGCT 57.107 38.095 38.32 28.50 44.36 3.91
560 571 5.123186 TCGTGAAGTATTAACAAGGCATTGG 59.877 40.000 16.45 0.00 40.97 3.16
561 572 6.176975 TCGTGAAGTATTAACAAGGCATTG 57.823 37.500 10.01 10.01 42.46 2.82
562 573 6.811253 TTCGTGAAGTATTAACAAGGCATT 57.189 33.333 0.00 0.00 0.00 3.56
563 574 6.205853 TGTTTCGTGAAGTATTAACAAGGCAT 59.794 34.615 0.00 0.00 0.00 4.40
564 575 5.527951 TGTTTCGTGAAGTATTAACAAGGCA 59.472 36.000 0.00 0.00 0.00 4.75
565 576 5.992729 TGTTTCGTGAAGTATTAACAAGGC 58.007 37.500 0.00 0.00 0.00 4.35
566 577 6.572254 CGTTGTTTCGTGAAGTATTAACAAGG 59.428 38.462 0.00 0.00 36.51 3.61
567 578 6.572254 CCGTTGTTTCGTGAAGTATTAACAAG 59.428 38.462 0.00 0.00 36.51 3.16
568 579 6.420588 CCGTTGTTTCGTGAAGTATTAACAA 58.579 36.000 0.00 0.00 34.28 2.83
569 580 5.050227 CCCGTTGTTTCGTGAAGTATTAACA 60.050 40.000 0.00 0.00 0.00 2.41
570 581 5.177327 TCCCGTTGTTTCGTGAAGTATTAAC 59.823 40.000 0.00 0.00 0.00 2.01
579 590 1.144276 TGCTCCCGTTGTTTCGTGA 59.856 52.632 0.00 0.00 0.00 4.35
580 591 1.278637 GTGCTCCCGTTGTTTCGTG 59.721 57.895 0.00 0.00 0.00 4.35
583 594 0.534203 TCTGGTGCTCCCGTTGTTTC 60.534 55.000 1.59 0.00 35.15 2.78
591 602 0.668535 GTGTGTTTTCTGGTGCTCCC 59.331 55.000 1.59 0.00 0.00 4.30
594 605 2.128771 ACTGTGTGTTTTCTGGTGCT 57.871 45.000 0.00 0.00 0.00 4.40
595 606 2.423538 AGAACTGTGTGTTTTCTGGTGC 59.576 45.455 0.00 0.00 39.30 5.01
601 612 6.378582 TCTGTTGAAAGAACTGTGTGTTTTC 58.621 36.000 0.00 0.00 39.30 2.29
606 617 7.253422 AGAAAATCTGTTGAAAGAACTGTGTG 58.747 34.615 0.00 0.00 0.00 3.82
687 699 1.006571 GTGCGTTTCTCCGACAGGA 60.007 57.895 0.00 0.00 46.11 3.86
688 700 1.300620 TGTGCGTTTCTCCGACAGG 60.301 57.895 0.00 0.00 39.46 4.00
689 701 0.874175 TGTGTGCGTTTCTCCGACAG 60.874 55.000 0.00 0.00 0.00 3.51
691 703 0.874607 ACTGTGTGCGTTTCTCCGAC 60.875 55.000 0.00 0.00 0.00 4.79
693 705 1.493772 TAACTGTGTGCGTTTCTCCG 58.506 50.000 0.00 0.00 0.00 4.63
694 706 4.483476 AATTAACTGTGTGCGTTTCTCC 57.517 40.909 0.00 0.00 0.00 3.71
723 768 8.918202 TGTCCTAAATAAAACTGTGTGAGATT 57.082 30.769 0.00 0.00 0.00 2.40
724 769 7.607991 CCTGTCCTAAATAAAACTGTGTGAGAT 59.392 37.037 0.00 0.00 0.00 2.75
725 770 6.934645 CCTGTCCTAAATAAAACTGTGTGAGA 59.065 38.462 0.00 0.00 0.00 3.27
726 771 6.348540 GCCTGTCCTAAATAAAACTGTGTGAG 60.349 42.308 0.00 0.00 0.00 3.51
727 772 5.472137 GCCTGTCCTAAATAAAACTGTGTGA 59.528 40.000 0.00 0.00 0.00 3.58
742 787 4.897670 GGTATTACTTACAGGCCTGTCCTA 59.102 45.833 41.00 25.10 45.52 2.94
754 799 2.287103 GCTGCCTTGCGGTATTACTTAC 59.713 50.000 0.00 0.00 37.24 2.34
755 800 2.557317 GCTGCCTTGCGGTATTACTTA 58.443 47.619 0.00 0.00 37.24 2.24
756 801 1.379527 GCTGCCTTGCGGTATTACTT 58.620 50.000 0.00 0.00 37.24 2.24
757 802 0.463833 GGCTGCCTTGCGGTATTACT 60.464 55.000 12.43 0.00 37.24 2.24
878 927 4.416738 GAGTGGGCAGGGCAGGAC 62.417 72.222 0.00 0.00 0.00 3.85
885 934 1.580066 TATTTGGGGGAGTGGGCAGG 61.580 60.000 0.00 0.00 0.00 4.85
886 935 0.395724 GTATTTGGGGGAGTGGGCAG 60.396 60.000 0.00 0.00 0.00 4.85
887 936 1.143329 TGTATTTGGGGGAGTGGGCA 61.143 55.000 0.00 0.00 0.00 5.36
888 937 0.040499 TTGTATTTGGGGGAGTGGGC 59.960 55.000 0.00 0.00 0.00 5.36
889 938 1.618616 GGTTGTATTTGGGGGAGTGGG 60.619 57.143 0.00 0.00 0.00 4.61
890 939 1.076350 TGGTTGTATTTGGGGGAGTGG 59.924 52.381 0.00 0.00 0.00 4.00
891 940 2.560981 GTTGGTTGTATTTGGGGGAGTG 59.439 50.000 0.00 0.00 0.00 3.51
892 941 2.492010 GGTTGGTTGTATTTGGGGGAGT 60.492 50.000 0.00 0.00 0.00 3.85
893 942 2.176045 GGTTGGTTGTATTTGGGGGAG 58.824 52.381 0.00 0.00 0.00 4.30
950 1001 2.040442 GGGGGTTGGATTTGGGGG 59.960 66.667 0.00 0.00 0.00 5.40
951 1002 1.001631 GAGGGGGTTGGATTTGGGG 59.998 63.158 0.00 0.00 0.00 4.96
1232 1290 2.668457 CGGGTCAGATCGAACAGAAAAG 59.332 50.000 0.00 0.00 30.31 2.27
1237 1295 2.126914 GATCGGGTCAGATCGAACAG 57.873 55.000 0.00 1.77 37.82 3.16
1278 1354 4.929707 CTATTGCCGCCGACCCCC 62.930 72.222 0.00 0.00 0.00 5.40
1288 1373 0.179189 GTGAACTGCACGCTATTGCC 60.179 55.000 0.00 0.00 42.25 4.52
1289 1374 3.296516 GTGAACTGCACGCTATTGC 57.703 52.632 0.00 0.00 43.31 3.56
1427 1512 0.178873 AGAAACCAGGGCTGAGGGTA 60.179 55.000 0.00 0.00 33.71 3.69
1429 1514 1.204113 AGAGAAACCAGGGCTGAGGG 61.204 60.000 0.00 0.00 0.00 4.30
1430 1515 0.695347 AAGAGAAACCAGGGCTGAGG 59.305 55.000 0.00 0.00 0.00 3.86
1431 1516 3.922171 ATAAGAGAAACCAGGGCTGAG 57.078 47.619 0.00 0.00 0.00 3.35
1432 1517 4.162320 CAGTATAAGAGAAACCAGGGCTGA 59.838 45.833 0.00 0.00 0.00 4.26
1441 1526 6.091441 CCACAGCAGAACAGTATAAGAGAAAC 59.909 42.308 0.00 0.00 0.00 2.78
1473 1566 1.536418 CCTCCCTGGGACACTCACA 60.536 63.158 12.53 0.00 0.00 3.58
1502 1599 0.320374 TGATAAAGGCGGGGATAGCG 59.680 55.000 0.00 0.00 35.00 4.26
1535 1632 2.048503 CGGAACCGGTGTGAGACC 60.049 66.667 8.52 4.50 42.07 3.85
1536 1633 2.737376 GCGGAACCGGTGTGAGAC 60.737 66.667 8.52 0.00 40.19 3.36
1551 1648 3.058224 CCTGAACAAACCCTAAGAAAGCG 60.058 47.826 0.00 0.00 0.00 4.68
1553 1650 6.771267 AGTAACCTGAACAAACCCTAAGAAAG 59.229 38.462 0.00 0.00 0.00 2.62
1605 1735 4.344938 AAATCCCCAATCACATACCCAA 57.655 40.909 0.00 0.00 0.00 4.12
1631 1765 2.949644 CCTTAAGCCCCCATTTAAGTCG 59.050 50.000 0.00 0.00 35.90 4.18
1650 1784 1.004394 GGCTACACAAGGGTAAAGCCT 59.996 52.381 8.65 0.00 44.68 4.58
1656 1790 2.835764 CCTACAAGGCTACACAAGGGTA 59.164 50.000 0.00 0.00 0.00 3.69
1657 1791 1.628846 CCTACAAGGCTACACAAGGGT 59.371 52.381 0.00 0.00 0.00 4.34
1658 1792 1.628846 ACCTACAAGGCTACACAAGGG 59.371 52.381 0.00 0.00 39.63 3.95
1659 1793 3.418684 AACCTACAAGGCTACACAAGG 57.581 47.619 0.00 0.00 39.63 3.61
1660 1794 4.642429 AGAAACCTACAAGGCTACACAAG 58.358 43.478 0.00 0.00 39.63 3.16
1691 1828 9.926751 CAATAGTATTCATCAGCAAACTGTAAG 57.073 33.333 0.00 0.00 44.77 2.34
1714 1851 8.050778 TGTTTGACAAAGAAGTAACAGACAAT 57.949 30.769 0.00 0.00 0.00 2.71
1715 1852 7.441890 TGTTTGACAAAGAAGTAACAGACAA 57.558 32.000 0.00 0.00 0.00 3.18
1716 1853 7.441890 TTGTTTGACAAAGAAGTAACAGACA 57.558 32.000 6.41 0.00 34.76 3.41
1725 1862 9.890352 TTTTCCAAAAATTGTTTGACAAAGAAG 57.110 25.926 14.87 2.72 41.96 2.85
1740 1877 6.811954 ACACGGACACTAATTTTCCAAAAAT 58.188 32.000 0.00 0.00 0.00 1.82
1748 1885 7.966246 TGTATGTAACACGGACACTAATTTT 57.034 32.000 0.00 0.00 31.43 1.82
1756 1895 2.633967 AGGGTTGTATGTAACACGGACA 59.366 45.455 0.00 0.00 38.95 4.02
1757 1896 2.997986 CAGGGTTGTATGTAACACGGAC 59.002 50.000 0.00 0.00 38.95 4.79
1758 1897 2.633967 ACAGGGTTGTATGTAACACGGA 59.366 45.455 0.00 0.00 38.95 4.69
1761 1900 5.761165 AAACACAGGGTTGTATGTAACAC 57.239 39.130 0.00 0.00 40.35 3.32
1762 1901 7.173562 GTCATAAACACAGGGTTGTATGTAACA 59.826 37.037 13.20 0.00 40.35 2.41
1763 1902 7.389607 AGTCATAAACACAGGGTTGTATGTAAC 59.610 37.037 13.20 8.31 40.35 2.50
1765 1904 7.011499 AGTCATAAACACAGGGTTGTATGTA 57.989 36.000 13.20 0.00 40.35 2.29
1766 1905 5.876357 AGTCATAAACACAGGGTTGTATGT 58.124 37.500 13.20 0.00 40.35 2.29
1767 1906 6.817765 AAGTCATAAACACAGGGTTGTATG 57.182 37.500 9.67 9.67 40.35 2.39
1773 1912 7.686434 ACTAACATAAGTCATAAACACAGGGT 58.314 34.615 0.00 0.00 0.00 4.34
1774 1913 8.561738 AACTAACATAAGTCATAAACACAGGG 57.438 34.615 0.00 0.00 0.00 4.45
1787 1926 8.952278 TGGCATCGATTTAAAACTAACATAAGT 58.048 29.630 0.00 0.00 0.00 2.24
1789 1928 9.781834 CTTGGCATCGATTTAAAACTAACATAA 57.218 29.630 0.00 0.00 0.00 1.90
1790 1929 7.913297 GCTTGGCATCGATTTAAAACTAACATA 59.087 33.333 0.00 0.00 0.00 2.29
1791 1930 6.751888 GCTTGGCATCGATTTAAAACTAACAT 59.248 34.615 0.00 0.00 0.00 2.71
1792 1931 6.090129 GCTTGGCATCGATTTAAAACTAACA 58.910 36.000 0.00 0.00 0.00 2.41
1793 1932 6.090129 TGCTTGGCATCGATTTAAAACTAAC 58.910 36.000 0.00 0.00 31.71 2.34
1794 1933 6.150307 TCTGCTTGGCATCGATTTAAAACTAA 59.850 34.615 0.00 0.00 38.13 2.24
1795 1934 5.645929 TCTGCTTGGCATCGATTTAAAACTA 59.354 36.000 0.00 0.00 38.13 2.24
1796 1935 4.458989 TCTGCTTGGCATCGATTTAAAACT 59.541 37.500 0.00 0.00 38.13 2.66
1797 1936 4.732784 TCTGCTTGGCATCGATTTAAAAC 58.267 39.130 0.00 0.00 38.13 2.43
1798 1937 5.160641 GTTCTGCTTGGCATCGATTTAAAA 58.839 37.500 0.00 0.00 38.13 1.52
1804 1943 0.254178 AGGTTCTGCTTGGCATCGAT 59.746 50.000 0.00 0.00 38.13 3.59
1806 1945 0.392193 AGAGGTTCTGCTTGGCATCG 60.392 55.000 0.00 0.00 38.13 3.84
1807 1946 1.093159 CAGAGGTTCTGCTTGGCATC 58.907 55.000 0.00 0.00 37.72 3.91
1839 1980 3.689347 TGCAGCACATAGTTGAGGAATT 58.311 40.909 0.00 0.00 0.00 2.17
1853 1996 1.105457 TTGAAGCCCATATGCAGCAC 58.895 50.000 15.75 10.62 0.00 4.40
1855 1998 1.066605 CAGTTGAAGCCCATATGCAGC 59.933 52.381 7.66 7.66 0.00 5.25
1911 2055 9.995003 TGAAATCAACTTAAAACCAGCATAAAT 57.005 25.926 0.00 0.00 0.00 1.40
1912 2056 9.995003 ATGAAATCAACTTAAAACCAGCATAAA 57.005 25.926 0.00 0.00 0.00 1.40
1913 2057 9.421806 CATGAAATCAACTTAAAACCAGCATAA 57.578 29.630 0.00 0.00 0.00 1.90
1916 2060 6.815089 ACATGAAATCAACTTAAAACCAGCA 58.185 32.000 0.00 0.00 0.00 4.41
1917 2061 7.713764 AACATGAAATCAACTTAAAACCAGC 57.286 32.000 0.00 0.00 0.00 4.85
1918 2062 8.764287 GGAAACATGAAATCAACTTAAAACCAG 58.236 33.333 0.00 0.00 0.00 4.00
1919 2063 8.260818 TGGAAACATGAAATCAACTTAAAACCA 58.739 29.630 0.00 0.00 33.40 3.67
1920 2064 8.655651 TGGAAACATGAAATCAACTTAAAACC 57.344 30.769 0.00 0.00 33.40 3.27
1921 2065 8.275632 GCTGGAAACATGAAATCAACTTAAAAC 58.724 33.333 0.00 0.00 41.51 2.43
1922 2066 7.984050 TGCTGGAAACATGAAATCAACTTAAAA 59.016 29.630 0.00 0.00 41.51 1.52
1923 2067 7.437862 GTGCTGGAAACATGAAATCAACTTAAA 59.562 33.333 0.00 0.00 41.51 1.52
1924 2068 6.922957 GTGCTGGAAACATGAAATCAACTTAA 59.077 34.615 0.00 0.00 41.51 1.85
1925 2069 6.265196 AGTGCTGGAAACATGAAATCAACTTA 59.735 34.615 0.00 0.00 41.51 2.24
1933 2077 4.365514 TCCTAGTGCTGGAAACATGAAA 57.634 40.909 0.00 0.00 41.51 2.69
1946 2090 2.733517 GTTGCTCTACGATCCTAGTGC 58.266 52.381 14.91 14.91 34.96 4.40
1957 2101 9.027129 TGTGTTATTAATGTATCGTTGCTCTAC 57.973 33.333 0.00 0.00 0.00 2.59
1959 2103 7.254455 GCTGTGTTATTAATGTATCGTTGCTCT 60.254 37.037 0.00 0.00 0.00 4.09
1966 2110 8.058328 CAGTTCTGCTGTGTTATTAATGTATCG 58.942 37.037 0.00 0.00 40.27 2.92
1998 2614 6.036083 GCACTACACAATTCATAGGTGTACTG 59.964 42.308 0.00 0.00 43.43 2.74
2029 2658 5.184892 AGGAAGTTCAGAAGGTGCAATAT 57.815 39.130 5.01 0.00 0.00 1.28
2032 2661 3.297134 AAGGAAGTTCAGAAGGTGCAA 57.703 42.857 5.01 0.00 0.00 4.08
2060 2689 8.685427 CCATAATATGAACAAATGGTCAACAGA 58.315 33.333 5.08 0.00 45.93 3.41
2067 2696 7.873719 TTCGTCCATAATATGAACAAATGGT 57.126 32.000 1.10 0.00 38.58 3.55
2072 2701 7.281999 TGCAAGATTCGTCCATAATATGAACAA 59.718 33.333 1.10 0.00 0.00 2.83
2080 2709 4.943705 AGTGTTGCAAGATTCGTCCATAAT 59.056 37.500 0.00 0.00 0.00 1.28
2083 2712 2.783135 AGTGTTGCAAGATTCGTCCAT 58.217 42.857 0.00 0.00 0.00 3.41
2155 2788 9.632638 AGCTGGTAAGAATTTGTGACATATTAT 57.367 29.630 1.28 0.00 0.00 1.28
2157 2790 7.944729 AGCTGGTAAGAATTTGTGACATATT 57.055 32.000 0.85 0.85 0.00 1.28
2160 2793 7.759489 TTAAGCTGGTAAGAATTTGTGACAT 57.241 32.000 0.00 0.00 0.00 3.06
2221 2881 6.012113 TCCATCAGGAATCATGTCAAGTTTT 58.988 36.000 0.00 0.00 42.23 2.43
2237 2897 0.617413 AGCACTCAAGGTCCATCAGG 59.383 55.000 0.00 0.00 0.00 3.86
2244 2904 2.565841 ACAAAGACAGCACTCAAGGTC 58.434 47.619 0.00 0.00 0.00 3.85
2245 2905 2.684881 CAACAAAGACAGCACTCAAGGT 59.315 45.455 0.00 0.00 0.00 3.50
2246 2906 2.542411 GCAACAAAGACAGCACTCAAGG 60.542 50.000 0.00 0.00 0.00 3.61
2248 2908 2.368439 AGCAACAAAGACAGCACTCAA 58.632 42.857 0.00 0.00 0.00 3.02
2249 2909 2.042686 AGCAACAAAGACAGCACTCA 57.957 45.000 0.00 0.00 0.00 3.41
2250 2910 2.098117 ACAAGCAACAAAGACAGCACTC 59.902 45.455 0.00 0.00 0.00 3.51
2251 2911 2.094675 ACAAGCAACAAAGACAGCACT 58.905 42.857 0.00 0.00 0.00 4.40
2252 2912 2.566952 ACAAGCAACAAAGACAGCAC 57.433 45.000 0.00 0.00 0.00 4.40
2253 2913 4.097741 ACAATACAAGCAACAAAGACAGCA 59.902 37.500 0.00 0.00 0.00 4.41
2254 2914 4.610945 ACAATACAAGCAACAAAGACAGC 58.389 39.130 0.00 0.00 0.00 4.40
2255 2915 7.189693 TCTACAATACAAGCAACAAAGACAG 57.810 36.000 0.00 0.00 0.00 3.51
2256 2916 7.744087 ATCTACAATACAAGCAACAAAGACA 57.256 32.000 0.00 0.00 0.00 3.41
2257 2917 8.289618 TCAATCTACAATACAAGCAACAAAGAC 58.710 33.333 0.00 0.00 0.00 3.01
2258 2918 8.389779 TCAATCTACAATACAAGCAACAAAGA 57.610 30.769 0.00 0.00 0.00 2.52
2259 2919 9.630098 AATCAATCTACAATACAAGCAACAAAG 57.370 29.630 0.00 0.00 0.00 2.77
2260 2920 9.624697 GAATCAATCTACAATACAAGCAACAAA 57.375 29.630 0.00 0.00 0.00 2.83
2261 2921 8.791675 TGAATCAATCTACAATACAAGCAACAA 58.208 29.630 0.00 0.00 0.00 2.83
2262 2922 8.334263 TGAATCAATCTACAATACAAGCAACA 57.666 30.769 0.00 0.00 0.00 3.33
2263 2923 9.793252 AATGAATCAATCTACAATACAAGCAAC 57.207 29.630 0.00 0.00 0.00 4.17
2292 2952 9.527566 CTCACAAGTGTAAACAACAAATTTTTG 57.472 29.630 1.56 1.56 40.63 2.44
2293 2953 9.482627 TCTCACAAGTGTAAACAACAAATTTTT 57.517 25.926 0.00 0.00 40.63 1.94
2294 2954 9.482627 TTCTCACAAGTGTAAACAACAAATTTT 57.517 25.926 0.00 0.00 40.63 1.82
2295 2955 9.651913 ATTCTCACAAGTGTAAACAACAAATTT 57.348 25.926 0.00 0.00 40.63 1.82
2296 2956 9.651913 AATTCTCACAAGTGTAAACAACAAATT 57.348 25.926 0.00 0.00 40.63 1.82
2297 2957 9.301153 GAATTCTCACAAGTGTAAACAACAAAT 57.699 29.630 0.00 0.00 40.63 2.32
2298 2958 8.300286 TGAATTCTCACAAGTGTAAACAACAAA 58.700 29.630 7.05 0.00 40.63 2.83
2299 2959 7.821652 TGAATTCTCACAAGTGTAAACAACAA 58.178 30.769 7.05 0.00 40.63 2.83
2300 2960 7.384439 TGAATTCTCACAAGTGTAAACAACA 57.616 32.000 7.05 0.00 35.06 3.33
2301 2961 7.915397 ACATGAATTCTCACAAGTGTAAACAAC 59.085 33.333 7.05 0.00 33.30 3.32
2302 2962 7.914871 CACATGAATTCTCACAAGTGTAAACAA 59.085 33.333 7.05 0.00 33.30 2.83
2303 2963 7.281999 TCACATGAATTCTCACAAGTGTAAACA 59.718 33.333 7.05 3.17 35.38 2.83
2304 2964 7.639039 TCACATGAATTCTCACAAGTGTAAAC 58.361 34.615 7.05 0.00 35.38 2.01
2305 2965 7.800155 TCACATGAATTCTCACAAGTGTAAA 57.200 32.000 7.05 0.00 35.38 2.01
2306 2966 7.518211 CGTTCACATGAATTCTCACAAGTGTAA 60.518 37.037 7.05 0.00 35.38 2.41
2307 2967 6.073819 CGTTCACATGAATTCTCACAAGTGTA 60.074 38.462 7.05 0.00 35.38 2.90
2308 2968 5.277490 CGTTCACATGAATTCTCACAAGTGT 60.277 40.000 7.05 0.00 35.38 3.55
2309 2969 5.050159 TCGTTCACATGAATTCTCACAAGTG 60.050 40.000 7.05 6.59 36.33 3.16
2310 2970 5.056480 TCGTTCACATGAATTCTCACAAGT 58.944 37.500 7.05 0.00 36.33 3.16
2311 2971 5.390251 CCTCGTTCACATGAATTCTCACAAG 60.390 44.000 7.05 0.00 36.33 3.16
2312 2972 4.452114 CCTCGTTCACATGAATTCTCACAA 59.548 41.667 7.05 0.00 36.33 3.33
2313 2973 3.996363 CCTCGTTCACATGAATTCTCACA 59.004 43.478 7.05 0.00 36.33 3.58
2314 2974 3.997021 ACCTCGTTCACATGAATTCTCAC 59.003 43.478 7.05 0.00 36.33 3.51
2315 2975 4.271696 ACCTCGTTCACATGAATTCTCA 57.728 40.909 7.05 0.00 36.33 3.27
2316 2976 4.268884 GCTACCTCGTTCACATGAATTCTC 59.731 45.833 7.05 0.00 36.33 2.87
2317 2977 4.184629 GCTACCTCGTTCACATGAATTCT 58.815 43.478 7.05 0.00 36.33 2.40
2318 2978 3.932710 TGCTACCTCGTTCACATGAATTC 59.067 43.478 0.00 0.00 36.33 2.17
2319 2979 3.937814 TGCTACCTCGTTCACATGAATT 58.062 40.909 0.00 0.00 36.33 2.17
2320 2980 3.610040 TGCTACCTCGTTCACATGAAT 57.390 42.857 0.00 0.00 36.33 2.57
2321 2981 3.610040 ATGCTACCTCGTTCACATGAA 57.390 42.857 0.00 0.00 0.00 2.57
2322 2982 3.610040 AATGCTACCTCGTTCACATGA 57.390 42.857 0.00 0.00 0.00 3.07
2323 2983 4.685169 AAAATGCTACCTCGTTCACATG 57.315 40.909 0.00 0.00 0.00 3.21
2324 2984 5.730550 TCTAAAATGCTACCTCGTTCACAT 58.269 37.500 0.00 0.00 0.00 3.21
2325 2985 5.047590 TCTCTAAAATGCTACCTCGTTCACA 60.048 40.000 0.00 0.00 0.00 3.58
2326 2986 5.408356 TCTCTAAAATGCTACCTCGTTCAC 58.592 41.667 0.00 0.00 0.00 3.18
2327 2987 5.394224 CCTCTCTAAAATGCTACCTCGTTCA 60.394 44.000 0.00 0.00 0.00 3.18
2328 2988 5.044558 CCTCTCTAAAATGCTACCTCGTTC 58.955 45.833 0.00 0.00 0.00 3.95
2329 2989 4.141914 CCCTCTCTAAAATGCTACCTCGTT 60.142 45.833 0.00 0.00 0.00 3.85
2330 2990 3.385111 CCCTCTCTAAAATGCTACCTCGT 59.615 47.826 0.00 0.00 0.00 4.18
2331 2991 3.637229 TCCCTCTCTAAAATGCTACCTCG 59.363 47.826 0.00 0.00 0.00 4.63
2332 2992 5.071115 ACATCCCTCTCTAAAATGCTACCTC 59.929 44.000 0.00 0.00 0.00 3.85
2333 2993 4.971924 ACATCCCTCTCTAAAATGCTACCT 59.028 41.667 0.00 0.00 0.00 3.08
2334 2994 5.297569 ACATCCCTCTCTAAAATGCTACC 57.702 43.478 0.00 0.00 0.00 3.18
2335 2995 7.631717 AAAACATCCCTCTCTAAAATGCTAC 57.368 36.000 0.00 0.00 0.00 3.58
2336 2996 9.920946 ATTAAAACATCCCTCTCTAAAATGCTA 57.079 29.630 0.00 0.00 0.00 3.49
2337 2997 8.829373 ATTAAAACATCCCTCTCTAAAATGCT 57.171 30.769 0.00 0.00 0.00 3.79
2377 3037 1.982226 TGCCCTGTACTTGCTTCCTTA 59.018 47.619 0.00 0.00 0.00 2.69
2390 3084 4.019174 CAAAATGGAAGATAGTGCCCTGT 58.981 43.478 0.00 0.00 0.00 4.00
2397 3091 7.710475 CCAAACAACAACAAAATGGAAGATAGT 59.290 33.333 0.00 0.00 0.00 2.12
2400 3094 5.296531 GCCAAACAACAACAAAATGGAAGAT 59.703 36.000 0.00 0.00 0.00 2.40
2435 3133 9.909043 GCGAAGATTTCTCTTTCTAATAAACTC 57.091 33.333 0.00 0.00 41.87 3.01
2436 3134 9.660180 AGCGAAGATTTCTCTTTCTAATAAACT 57.340 29.630 0.00 0.00 41.87 2.66
2446 3144 8.035394 TGTAGATTACAGCGAAGATTTCTCTTT 58.965 33.333 0.00 0.00 36.71 2.52
2447 3145 7.548097 TGTAGATTACAGCGAAGATTTCTCTT 58.452 34.615 0.00 0.00 38.02 2.85
2479 3177 4.078639 CTGGGGTGAATATCAGGAGTTC 57.921 50.000 0.00 0.00 0.00 3.01
2484 3182 1.143813 AGCCTGGGGTGAATATCAGG 58.856 55.000 0.00 0.00 46.93 3.86
2485 3183 2.173356 TCAAGCCTGGGGTGAATATCAG 59.827 50.000 0.00 0.00 0.00 2.90
2493 3191 1.078143 GTAGCTCAAGCCTGGGGTG 60.078 63.158 0.00 0.00 43.38 4.61
2495 3193 1.078143 GTGTAGCTCAAGCCTGGGG 60.078 63.158 0.00 0.00 43.38 4.96
2497 3195 0.674895 GTGGTGTAGCTCAAGCCTGG 60.675 60.000 0.00 0.00 43.38 4.45
2520 3218 7.545265 TGCAATTAAGTCACAAATTGGAATAGC 59.455 33.333 14.25 3.47 39.49 2.97
2535 3233 7.865385 TGACCACAAAGTAAATGCAATTAAGTC 59.135 33.333 0.00 0.00 33.67 3.01
2538 3236 7.721402 ACTGACCACAAAGTAAATGCAATTAA 58.279 30.769 0.00 0.00 33.67 1.40
2558 3256 1.080025 GTGGCACGGAGGTACTGAC 60.080 63.158 0.00 0.00 41.55 3.51
2563 3264 0.035739 GAAAAGGTGGCACGGAGGTA 59.964 55.000 12.17 0.00 0.00 3.08
2599 3300 6.491394 GTGCTCTACACTAGTAATCTCAGTG 58.509 44.000 0.00 0.00 46.41 3.66
2600 3301 6.687081 GTGCTCTACACTAGTAATCTCAGT 57.313 41.667 0.00 0.00 46.41 3.41
2613 3322 7.014615 TGGTGAATTCAACTAGTGCTCTACAC 61.015 42.308 23.46 4.23 41.15 2.90
2622 3331 3.077359 GCTGCTGGTGAATTCAACTAGT 58.923 45.455 23.46 0.00 33.92 2.57
2711 3433 6.894103 AGAGTAGGGATTCTGCAAAATGAAAT 59.106 34.615 0.00 0.00 0.00 2.17
2769 3492 6.243587 ATGTAGTACATCGATGCACCAGCA 62.244 45.833 25.11 19.15 45.36 4.41
2805 3528 3.490761 CCTTGTCAATTTTGTGGAGCGTT 60.491 43.478 0.00 0.00 0.00 4.84
2817 3540 2.094675 CCGAATGCTCCCTTGTCAATT 58.905 47.619 0.00 0.00 0.00 2.32
2820 3543 1.299648 CCCGAATGCTCCCTTGTCA 59.700 57.895 0.00 0.00 0.00 3.58
3027 3750 1.152247 TGCAGGACTGTCACCTCCT 60.152 57.895 10.38 0.00 37.38 3.69
3095 3818 1.875963 CCAAATGACCACCGACAGC 59.124 57.895 0.00 0.00 0.00 4.40
3151 3874 6.203808 TGCGATTACATAGTGACAGTACTT 57.796 37.500 0.00 0.00 32.19 2.24
3337 4066 0.605083 TCTCAGCATCGACAACAGCT 59.395 50.000 0.00 0.00 37.95 4.24
3379 4110 7.226441 TGGTTTTGTATGAGCATATGAGCTAT 58.774 34.615 6.97 0.00 46.75 2.97
3388 4119 5.622914 GCAGTTCATGGTTTTGTATGAGCAT 60.623 40.000 0.00 0.00 37.10 3.79
3546 4308 3.206964 GTTCCAGGTTATCAGGCTAAGC 58.793 50.000 0.00 0.00 0.00 3.09
3572 4334 4.462483 TGCCTGTTTCTTGAAAGTGTTTCT 59.538 37.500 0.00 0.00 40.32 2.52
3584 4346 4.184079 GCAGATGAAATGCCTGTTTCTT 57.816 40.909 7.53 2.56 38.58 2.52
3675 4437 3.805422 TGTCAAGAAATAGTTTGTCGCGT 59.195 39.130 5.77 0.00 0.00 6.01
3687 4449 8.408043 TTTACCACTGAATCATGTCAAGAAAT 57.592 30.769 0.00 0.00 0.00 2.17
3790 4552 7.921786 TGGTAGTATCATTCAGTTTTTCTGG 57.078 36.000 0.00 0.00 43.76 3.86
3844 4606 3.003689 ACATGAAAGTTTGCTCAACGGAG 59.996 43.478 0.00 0.00 44.33 4.63
3924 4691 8.534954 TGACAGTCCAGCTTATTAACTATAGT 57.465 34.615 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.