Multiple sequence alignment - TraesCS4A01G276900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G276900 chr4A 100.000 7371 0 0 1 7371 585034320 585026950 0.000000e+00 13612.0
1 TraesCS4A01G276900 chr4A 95.575 113 5 0 1 113 619286661 619286549 1.630000e-41 182.0
2 TraesCS4A01G276900 chr4B 92.576 7179 337 84 321 7371 26485928 26493038 0.000000e+00 10124.0
3 TraesCS4A01G276900 chr4B 82.667 225 31 7 1357 1578 57270351 57270570 7.550000e-45 193.0
4 TraesCS4A01G276900 chr4B 94.068 118 4 2 198 312 40215224 40215341 7.600000e-40 176.0
5 TraesCS4A01G276900 chr4B 90.278 72 3 1 111 182 26485847 26485914 2.830000e-14 91.6
6 TraesCS4A01G276900 chr4D 92.821 4109 151 50 313 4330 15551450 15555505 0.000000e+00 5821.0
7 TraesCS4A01G276900 chr4D 93.900 2328 101 18 4399 6723 15555755 15558044 0.000000e+00 3474.0
8 TraesCS4A01G276900 chr4D 87.647 680 33 17 6721 7371 15558751 15559408 0.000000e+00 743.0
9 TraesCS4A01G276900 chr4D 83.258 221 32 4 1360 1578 43054305 43054522 1.620000e-46 198.0
10 TraesCS4A01G276900 chr4D 96.970 99 3 0 111 209 15551337 15551435 4.570000e-37 167.0
11 TraesCS4A01G276900 chr6B 85.854 205 26 3 1363 1566 670039497 670039295 1.610000e-51 215.0
12 TraesCS4A01G276900 chr6B 89.051 137 10 4 180 312 713563468 713563333 1.650000e-36 165.0
13 TraesCS4A01G276900 chr6B 82.301 113 13 5 2190 2302 684764345 684764450 2.830000e-14 91.6
14 TraesCS4A01G276900 chr3D 82.791 215 32 5 1360 1573 493038555 493038345 3.510000e-43 187.0
15 TraesCS4A01G276900 chr3D 77.165 127 25 2 4778 4903 460446775 460446898 3.690000e-08 71.3
16 TraesCS4A01G276900 chr6D 95.652 115 5 0 1 115 389980448 389980334 1.260000e-42 185.0
17 TraesCS4A01G276900 chr6D 86.076 79 10 1 2233 2310 451027511 451027589 4.740000e-12 84.2
18 TraesCS4A01G276900 chr5B 82.407 216 34 4 1359 1573 366053612 366053400 1.260000e-42 185.0
19 TraesCS4A01G276900 chr2A 95.652 115 5 0 1 115 745589277 745589391 1.260000e-42 185.0
20 TraesCS4A01G276900 chr2A 92.623 122 5 3 194 312 378844108 378844228 9.830000e-39 172.0
21 TraesCS4A01G276900 chr5A 82.110 218 35 3 1357 1573 567612086 567611872 4.540000e-42 183.0
22 TraesCS4A01G276900 chr5A 95.575 113 5 0 1 113 29689191 29689079 1.630000e-41 182.0
23 TraesCS4A01G276900 chr5A 94.737 114 6 0 1 114 681263941 681263828 2.110000e-40 178.0
24 TraesCS4A01G276900 chr5A 92.742 124 5 3 193 312 218990173 218990050 7.600000e-40 176.0
25 TraesCS4A01G276900 chr7A 92.913 127 6 3 1 124 630718668 630718794 1.630000e-41 182.0
26 TraesCS4A01G276900 chr7A 94.828 116 2 3 201 312 41866901 41866786 2.110000e-40 178.0
27 TraesCS4A01G276900 chr7A 92.683 123 8 1 1 123 688618231 688618352 7.600000e-40 176.0
28 TraesCS4A01G276900 chr5D 82.192 219 32 6 1358 1573 538171533 538171747 1.630000e-41 182.0
29 TraesCS4A01G276900 chr1A 94.167 120 4 2 199 315 520861063 520860944 5.880000e-41 180.0
30 TraesCS4A01G276900 chr1A 94.737 114 6 0 1 114 441955950 441956063 2.110000e-40 178.0
31 TraesCS4A01G276900 chr1A 94.690 113 6 0 1 113 354686362 354686250 7.600000e-40 176.0
32 TraesCS4A01G276900 chr3B 92.742 124 3 4 192 312 8039410 8039290 2.730000e-39 174.0
33 TraesCS4A01G276900 chr3B 91.473 129 8 2 187 312 584578123 584577995 2.730000e-39 174.0
34 TraesCS4A01G276900 chr3B 92.683 123 4 4 197 315 131077396 131077275 9.830000e-39 172.0
35 TraesCS4A01G276900 chrUn 81.061 132 19 4 2225 2351 100518666 100518796 4.710000e-17 100.0
36 TraesCS4A01G276900 chr6A 76.303 211 37 10 2226 2429 35943595 35943391 4.710000e-17 100.0
37 TraesCS4A01G276900 chr6A 80.165 121 9 6 6696 6815 205100393 205100287 7.930000e-10 76.8
38 TraesCS4A01G276900 chr7B 82.353 102 18 0 6578 6679 30794975 30794874 1.020000e-13 89.8
39 TraesCS4A01G276900 chr7B 81.731 104 19 0 6576 6679 31464005 31463902 3.660000e-13 87.9
40 TraesCS4A01G276900 chr7D 81.373 102 19 0 6578 6679 82462481 82462380 4.740000e-12 84.2
41 TraesCS4A01G276900 chr7D 95.455 44 2 0 6824 6867 568415027 568414984 3.690000e-08 71.3
42 TraesCS4A01G276900 chr2B 78.295 129 21 7 4766 4891 26488119 26488243 7.930000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G276900 chr4A 585026950 585034320 7370 True 13612.00 13612 100.0000 1 7371 1 chr4A.!!$R1 7370
1 TraesCS4A01G276900 chr4B 26485847 26493038 7191 False 5107.80 10124 91.4270 111 7371 2 chr4B.!!$F3 7260
2 TraesCS4A01G276900 chr4D 15551337 15559408 8071 False 2551.25 5821 92.8345 111 7371 4 chr4D.!!$F2 7260


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1035 0.034670 AGGTACTCGTAGGGCTTCGT 60.035 55.000 0.00 0.00 0.00 3.85 F
990 1036 0.100146 GGTACTCGTAGGGCTTCGTG 59.900 60.000 0.00 0.00 0.00 4.35 F
991 1037 0.100146 GTACTCGTAGGGCTTCGTGG 59.900 60.000 0.00 0.00 0.00 4.94 F
1035 1081 0.460987 AAATCCTGGAGCTTCGCGAG 60.461 55.000 9.59 4.97 0.00 5.03 F
1826 1906 1.140852 CCTTCAGATATTCGTGGGCCA 59.859 52.381 0.00 0.00 0.00 5.36 F
3551 3674 0.400213 TTGAAGTCAACCTCGGCCAT 59.600 50.000 2.24 0.00 0.00 4.40 F
3971 4094 0.105039 CCTTGATAGCCCGTGTCCTC 59.895 60.000 0.00 0.00 0.00 3.71 F
4385 4512 0.031817 TACCCTGTACCCTGTAGGCC 60.032 60.000 0.00 0.00 40.58 5.19 F
4392 4519 0.031817 TACCCTGTAGGCCTGTACCC 60.032 60.000 17.99 0.00 40.58 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 2235 0.110486 ACCAAAACTCCATGTCCGCT 59.890 50.000 0.00 0.0 0.00 5.52 R
2498 2601 0.745845 CCCGAGCTCAAATGGTCCTG 60.746 60.000 15.40 0.0 0.00 3.86 R
2929 3032 1.208052 AGACCTGATTCCCATGACACG 59.792 52.381 0.00 0.0 0.00 4.49 R
3031 3134 9.559958 AAGAATGCGAAGTTAAATGTAAAGATG 57.440 29.630 0.00 0.0 0.00 2.90 R
3646 3769 0.601046 TCAAGCAACCTGACTGAGCG 60.601 55.000 0.00 0.0 0.00 5.03 R
4366 4493 0.031817 GGCCTACAGGGTACAGGGTA 60.032 60.000 0.00 0.0 37.43 3.69 R
5506 5822 1.156736 TTAGCGCTTTCCTCAACTGC 58.843 50.000 18.68 0.0 0.00 4.40 R
6121 6439 1.002134 CACCTCCTTGTCGGGCATT 60.002 57.895 0.00 0.0 0.00 3.56 R
6382 6700 1.410004 TAACCATGAGAGCCCCTACG 58.590 55.000 0.00 0.0 0.00 3.51 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 9.783256 ATATAAATTCGGTCAAACTTAGCAAAC 57.217 29.630 0.00 0.00 0.00 2.93
62 63 5.767816 AATTCGGTCAAACTTAGCAAACT 57.232 34.783 0.00 0.00 0.00 2.66
63 64 5.767816 ATTCGGTCAAACTTAGCAAACTT 57.232 34.783 0.00 0.00 0.00 2.66
64 65 5.570234 TTCGGTCAAACTTAGCAAACTTT 57.430 34.783 0.00 0.00 0.00 2.66
65 66 4.915704 TCGGTCAAACTTAGCAAACTTTG 58.084 39.130 0.00 0.00 0.00 2.77
66 67 4.636648 TCGGTCAAACTTAGCAAACTTTGA 59.363 37.500 5.65 0.00 30.03 2.69
67 68 4.733405 CGGTCAAACTTAGCAAACTTTGAC 59.267 41.667 13.52 13.52 42.08 3.18
68 69 5.448632 CGGTCAAACTTAGCAAACTTTGACT 60.449 40.000 18.27 4.99 42.25 3.41
69 70 6.330278 GGTCAAACTTAGCAAACTTTGACTT 58.670 36.000 18.27 0.00 42.25 3.01
70 71 6.472486 GGTCAAACTTAGCAAACTTTGACTTC 59.528 38.462 18.27 5.97 42.25 3.01
71 72 7.027161 GTCAAACTTAGCAAACTTTGACTTCA 58.973 34.615 14.22 0.00 40.96 3.02
72 73 7.218963 GTCAAACTTAGCAAACTTTGACTTCAG 59.781 37.037 14.22 5.09 40.96 3.02
73 74 7.120579 TCAAACTTAGCAAACTTTGACTTCAGA 59.879 33.333 5.65 0.00 28.54 3.27
74 75 6.364945 ACTTAGCAAACTTTGACTTCAGAC 57.635 37.500 5.65 0.00 0.00 3.51
75 76 5.880332 ACTTAGCAAACTTTGACTTCAGACA 59.120 36.000 5.65 0.00 0.00 3.41
76 77 6.374333 ACTTAGCAAACTTTGACTTCAGACAA 59.626 34.615 5.65 0.00 0.00 3.18
77 78 5.643379 AGCAAACTTTGACTTCAGACAAA 57.357 34.783 5.65 4.72 37.36 2.83
85 86 6.942532 TTTGACTTCAGACAAAGCTAATGT 57.057 33.333 4.85 4.85 35.47 2.71
86 87 5.929697 TGACTTCAGACAAAGCTAATGTG 57.070 39.130 9.61 0.00 0.00 3.21
87 88 4.214119 TGACTTCAGACAAAGCTAATGTGC 59.786 41.667 9.61 2.86 0.00 4.57
88 89 3.187227 ACTTCAGACAAAGCTAATGTGCG 59.813 43.478 9.61 1.67 38.13 5.34
89 90 2.076100 TCAGACAAAGCTAATGTGCGG 58.924 47.619 9.61 3.78 38.13 5.69
90 91 2.076100 CAGACAAAGCTAATGTGCGGA 58.924 47.619 9.61 0.00 38.13 5.54
91 92 2.094894 CAGACAAAGCTAATGTGCGGAG 59.905 50.000 9.61 0.00 38.13 4.63
92 93 2.076863 GACAAAGCTAATGTGCGGAGT 58.923 47.619 9.61 0.00 38.13 3.85
93 94 3.056107 AGACAAAGCTAATGTGCGGAGTA 60.056 43.478 9.61 0.00 38.13 2.59
94 95 3.670625 ACAAAGCTAATGTGCGGAGTAA 58.329 40.909 4.40 0.00 38.13 2.24
95 96 4.069304 ACAAAGCTAATGTGCGGAGTAAA 58.931 39.130 4.40 0.00 38.13 2.01
96 97 4.517453 ACAAAGCTAATGTGCGGAGTAAAA 59.483 37.500 4.40 0.00 38.13 1.52
97 98 5.009210 ACAAAGCTAATGTGCGGAGTAAAAA 59.991 36.000 4.40 0.00 38.13 1.94
119 120 3.904717 AGACCCGAGAGAGTATTCACAT 58.095 45.455 0.00 0.00 0.00 3.21
230 231 4.686972 TGAGCATCAGTATAGACACAAGC 58.313 43.478 0.00 0.00 42.56 4.01
231 232 3.711086 AGCATCAGTATAGACACAAGCG 58.289 45.455 0.00 0.00 0.00 4.68
232 233 2.219674 GCATCAGTATAGACACAAGCGC 59.780 50.000 0.00 0.00 0.00 5.92
233 234 3.711086 CATCAGTATAGACACAAGCGCT 58.289 45.455 2.64 2.64 0.00 5.92
234 235 3.422417 TCAGTATAGACACAAGCGCTC 57.578 47.619 12.06 0.00 0.00 5.03
235 236 2.752903 TCAGTATAGACACAAGCGCTCA 59.247 45.455 12.06 0.00 0.00 4.26
236 237 3.381590 TCAGTATAGACACAAGCGCTCAT 59.618 43.478 12.06 0.00 0.00 2.90
237 238 4.578928 TCAGTATAGACACAAGCGCTCATA 59.421 41.667 12.06 0.00 0.00 2.15
238 239 5.241728 TCAGTATAGACACAAGCGCTCATAT 59.758 40.000 12.06 5.85 0.00 1.78
239 240 6.430000 TCAGTATAGACACAAGCGCTCATATA 59.570 38.462 12.06 4.88 0.00 0.86
240 241 6.524933 CAGTATAGACACAAGCGCTCATATAC 59.475 42.308 12.06 15.71 0.00 1.47
241 242 3.801114 AGACACAAGCGCTCATATACA 57.199 42.857 12.06 0.00 0.00 2.29
242 243 3.448686 AGACACAAGCGCTCATATACAC 58.551 45.455 12.06 0.00 0.00 2.90
243 244 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
247 248 2.756964 CGCTCATATACACGCGCG 59.243 61.111 30.96 30.96 39.11 6.86
248 249 2.009226 CGCTCATATACACGCGCGT 61.009 57.895 32.73 32.73 39.11 6.01
249 250 0.723459 CGCTCATATACACGCGCGTA 60.723 55.000 37.24 22.76 39.11 4.42
250 251 0.701303 GCTCATATACACGCGCGTAC 59.299 55.000 37.24 12.21 0.00 3.67
251 252 1.922880 GCTCATATACACGCGCGTACA 60.923 52.381 37.24 25.85 0.00 2.90
252 253 1.707117 CTCATATACACGCGCGTACAC 59.293 52.381 37.24 0.00 0.00 2.90
253 254 1.331447 TCATATACACGCGCGTACACT 59.669 47.619 37.24 21.72 0.00 3.55
254 255 1.707117 CATATACACGCGCGTACACTC 59.293 52.381 37.24 0.00 0.00 3.51
255 256 0.726256 TATACACGCGCGTACACTCA 59.274 50.000 37.24 16.71 0.00 3.41
256 257 0.795735 ATACACGCGCGTACACTCAC 60.796 55.000 37.24 0.00 0.00 3.51
257 258 2.784957 TACACGCGCGTACACTCACC 62.785 60.000 37.24 0.00 0.00 4.02
258 259 4.712425 ACGCGCGTACACTCACCC 62.712 66.667 37.08 0.00 0.00 4.61
260 261 4.065281 GCGCGTACACTCACCCCT 62.065 66.667 8.43 0.00 0.00 4.79
261 262 2.703798 GCGCGTACACTCACCCCTA 61.704 63.158 8.43 0.00 0.00 3.53
262 263 2.012902 GCGCGTACACTCACCCCTAT 62.013 60.000 8.43 0.00 0.00 2.57
263 264 0.248907 CGCGTACACTCACCCCTATG 60.249 60.000 0.00 0.00 0.00 2.23
264 265 1.108776 GCGTACACTCACCCCTATGA 58.891 55.000 0.00 0.00 0.00 2.15
265 266 1.479323 GCGTACACTCACCCCTATGAA 59.521 52.381 0.00 0.00 0.00 2.57
266 267 2.737679 GCGTACACTCACCCCTATGAAC 60.738 54.545 0.00 0.00 0.00 3.18
267 268 2.494471 CGTACACTCACCCCTATGAACA 59.506 50.000 0.00 0.00 0.00 3.18
268 269 3.675228 CGTACACTCACCCCTATGAACAC 60.675 52.174 0.00 0.00 0.00 3.32
269 270 2.334977 ACACTCACCCCTATGAACACA 58.665 47.619 0.00 0.00 0.00 3.72
270 271 2.038557 ACACTCACCCCTATGAACACAC 59.961 50.000 0.00 0.00 0.00 3.82
271 272 2.038426 CACTCACCCCTATGAACACACA 59.962 50.000 0.00 0.00 0.00 3.72
272 273 2.038557 ACTCACCCCTATGAACACACAC 59.961 50.000 0.00 0.00 0.00 3.82
273 274 1.001520 TCACCCCTATGAACACACACG 59.998 52.381 0.00 0.00 0.00 4.49
274 275 0.321298 ACCCCTATGAACACACACGC 60.321 55.000 0.00 0.00 0.00 5.34
275 276 0.321210 CCCCTATGAACACACACGCA 60.321 55.000 0.00 0.00 0.00 5.24
276 277 0.796312 CCCTATGAACACACACGCAC 59.204 55.000 0.00 0.00 0.00 5.34
277 278 1.507562 CCTATGAACACACACGCACA 58.492 50.000 0.00 0.00 0.00 4.57
278 279 1.194547 CCTATGAACACACACGCACAC 59.805 52.381 0.00 0.00 0.00 3.82
279 280 1.194547 CTATGAACACACACGCACACC 59.805 52.381 0.00 0.00 0.00 4.16
280 281 1.444119 ATGAACACACACGCACACCC 61.444 55.000 0.00 0.00 0.00 4.61
281 282 1.817941 GAACACACACGCACACCCT 60.818 57.895 0.00 0.00 0.00 4.34
282 283 0.531090 GAACACACACGCACACCCTA 60.531 55.000 0.00 0.00 0.00 3.53
283 284 0.812412 AACACACACGCACACCCTAC 60.812 55.000 0.00 0.00 0.00 3.18
284 285 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
285 286 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
286 287 2.525877 ACACGCACACCCTACCCT 60.526 61.111 0.00 0.00 0.00 4.34
287 288 1.228956 ACACGCACACCCTACCCTA 60.229 57.895 0.00 0.00 0.00 3.53
288 289 0.616679 ACACGCACACCCTACCCTAT 60.617 55.000 0.00 0.00 0.00 2.57
289 290 0.179084 CACGCACACCCTACCCTATG 60.179 60.000 0.00 0.00 0.00 2.23
290 291 0.324923 ACGCACACCCTACCCTATGA 60.325 55.000 0.00 0.00 0.00 2.15
291 292 0.389391 CGCACACCCTACCCTATGAG 59.611 60.000 0.00 0.00 0.00 2.90
292 293 0.106894 GCACACCCTACCCTATGAGC 59.893 60.000 0.00 0.00 0.00 4.26
293 294 1.496060 CACACCCTACCCTATGAGCA 58.504 55.000 0.00 0.00 0.00 4.26
294 295 1.139058 CACACCCTACCCTATGAGCAC 59.861 57.143 0.00 0.00 0.00 4.40
295 296 0.759346 CACCCTACCCTATGAGCACC 59.241 60.000 0.00 0.00 0.00 5.01
296 297 0.642710 ACCCTACCCTATGAGCACCT 59.357 55.000 0.00 0.00 0.00 4.00
297 298 1.343069 CCCTACCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
298 299 1.343069 CCTACCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
299 300 0.962489 CTACCCTATGAGCACCTCCG 59.038 60.000 0.00 0.00 0.00 4.63
300 301 0.554305 TACCCTATGAGCACCTCCGA 59.446 55.000 0.00 0.00 0.00 4.55
301 302 0.325296 ACCCTATGAGCACCTCCGAA 60.325 55.000 0.00 0.00 0.00 4.30
302 303 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
303 304 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
304 305 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
305 306 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
306 307 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
307 308 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
308 309 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
309 310 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
310 311 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
311 312 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
404 416 1.432657 GTAACTCCTCGGTCGGCTC 59.567 63.158 0.00 0.00 0.00 4.70
518 537 1.649815 CCCTCTTCCTCGTCGATCG 59.350 63.158 9.36 9.36 41.41 3.69
595 618 2.588314 CCAGCGAGGCTCAGATGC 60.588 66.667 15.95 9.64 36.40 3.91
615 639 3.627577 TGCTTTCCTAATTTCGATCCAGC 59.372 43.478 0.00 0.00 0.00 4.85
616 640 3.303395 GCTTTCCTAATTTCGATCCAGCG 60.303 47.826 0.00 0.00 0.00 5.18
639 663 3.033659 TCTGGTATCTCCTCTGTTCCC 57.966 52.381 0.00 0.00 37.07 3.97
640 664 2.314852 TCTGGTATCTCCTCTGTTCCCA 59.685 50.000 0.00 0.00 37.07 4.37
673 697 2.026542 TGCTCTGTTCTGCATCTGGAAT 60.027 45.455 0.00 0.00 33.94 3.01
674 698 3.015327 GCTCTGTTCTGCATCTGGAATT 58.985 45.455 0.00 0.00 0.00 2.17
678 702 4.008330 CTGTTCTGCATCTGGAATTCTGT 58.992 43.478 5.23 0.00 0.00 3.41
679 703 4.005650 TGTTCTGCATCTGGAATTCTGTC 58.994 43.478 5.23 0.00 0.00 3.51
735 770 0.321021 TTGGCGCTGGCAAATTTCAT 59.679 45.000 7.64 0.00 44.79 2.57
786 825 1.003233 GCCTTCGCTTTCCACCTCT 60.003 57.895 0.00 0.00 0.00 3.69
789 828 0.674895 CTTCGCTTTCCACCTCTGGG 60.675 60.000 0.00 0.00 38.25 4.45
832 871 5.187186 TCTTTCCTTTCTTATACCTGACGCT 59.813 40.000 0.00 0.00 0.00 5.07
839 878 7.711339 CCTTTCTTATACCTGACGCTTTTAGAT 59.289 37.037 0.00 0.00 0.00 1.98
840 879 9.099454 CTTTCTTATACCTGACGCTTTTAGATT 57.901 33.333 0.00 0.00 0.00 2.40
841 880 9.444600 TTTCTTATACCTGACGCTTTTAGATTT 57.555 29.630 0.00 0.00 0.00 2.17
842 881 8.420374 TCTTATACCTGACGCTTTTAGATTTG 57.580 34.615 0.00 0.00 0.00 2.32
843 882 7.494625 TCTTATACCTGACGCTTTTAGATTTGG 59.505 37.037 0.00 0.00 0.00 3.28
844 883 4.015872 ACCTGACGCTTTTAGATTTGGA 57.984 40.909 0.00 0.00 0.00 3.53
845 884 4.394729 ACCTGACGCTTTTAGATTTGGAA 58.605 39.130 0.00 0.00 0.00 3.53
846 885 4.455877 ACCTGACGCTTTTAGATTTGGAAG 59.544 41.667 0.00 0.00 0.00 3.46
854 893 5.866092 GCTTTTAGATTTGGAAGCCTTTCTG 59.134 40.000 0.00 0.00 38.78 3.02
855 894 5.982890 TTTAGATTTGGAAGCCTTTCTGG 57.017 39.130 0.00 0.00 39.35 3.86
869 908 1.910580 TTCTGGCCGTGGGGATCTTC 61.911 60.000 0.00 0.00 34.06 2.87
873 912 4.547367 CCGTGGGGATCTTCGGCC 62.547 72.222 0.00 0.00 36.68 6.13
882 925 2.227089 GATCTTCGGCCTCGTGTGGT 62.227 60.000 0.00 0.00 37.69 4.16
886 929 2.999739 TTCGGCCTCGTGTGGTTTCC 63.000 60.000 0.00 0.00 37.69 3.13
921 964 3.119424 TCGGTTTGGTTTTGGACAAGTTC 60.119 43.478 0.00 0.00 0.00 3.01
926 969 1.404035 GGTTTTGGACAAGTTCTGCGT 59.596 47.619 0.00 0.00 0.00 5.24
935 978 3.920446 ACAAGTTCTGCGTTTTTGGTTT 58.080 36.364 0.00 0.00 0.00 3.27
939 982 4.173256 AGTTCTGCGTTTTTGGTTTTCAG 58.827 39.130 0.00 0.00 0.00 3.02
941 984 4.442375 TCTGCGTTTTTGGTTTTCAGAA 57.558 36.364 0.00 0.00 0.00 3.02
946 989 4.862574 GCGTTTTTGGTTTTCAGAACTCTT 59.137 37.500 0.00 0.00 0.00 2.85
955 998 8.383318 TGGTTTTCAGAACTCTTATCTTTCTG 57.617 34.615 4.51 4.51 45.12 3.02
974 1020 1.132785 TGGTGTTGGTCCAGGTAGGTA 60.133 52.381 0.00 0.00 39.02 3.08
975 1021 1.277273 GGTGTTGGTCCAGGTAGGTAC 59.723 57.143 0.00 0.00 39.02 3.34
976 1022 2.254508 GTGTTGGTCCAGGTAGGTACT 58.745 52.381 0.00 0.00 46.37 2.73
977 1023 2.233186 GTGTTGGTCCAGGTAGGTACTC 59.767 54.545 0.00 0.00 41.75 2.59
978 1024 1.475682 GTTGGTCCAGGTAGGTACTCG 59.524 57.143 0.00 0.00 41.75 4.18
979 1025 0.700564 TGGTCCAGGTAGGTACTCGT 59.299 55.000 0.00 0.00 41.75 4.18
980 1026 1.915489 TGGTCCAGGTAGGTACTCGTA 59.085 52.381 0.00 0.00 41.75 3.43
981 1027 2.092753 TGGTCCAGGTAGGTACTCGTAG 60.093 54.545 0.00 0.00 41.75 3.51
982 1028 2.570135 GTCCAGGTAGGTACTCGTAGG 58.430 57.143 0.00 0.00 41.75 3.18
983 1029 1.492176 TCCAGGTAGGTACTCGTAGGG 59.508 57.143 0.00 0.00 41.75 3.53
984 1030 1.316651 CAGGTAGGTACTCGTAGGGC 58.683 60.000 0.00 0.00 41.75 5.19
985 1031 1.133853 CAGGTAGGTACTCGTAGGGCT 60.134 57.143 0.00 0.00 41.75 5.19
986 1032 1.568123 AGGTAGGTACTCGTAGGGCTT 59.432 52.381 0.00 0.00 41.75 4.35
987 1033 1.952990 GGTAGGTACTCGTAGGGCTTC 59.047 57.143 0.00 0.00 41.75 3.86
988 1034 1.601430 GTAGGTACTCGTAGGGCTTCG 59.399 57.143 0.00 0.00 41.75 3.79
989 1035 0.034670 AGGTACTCGTAGGGCTTCGT 60.035 55.000 0.00 0.00 0.00 3.85
990 1036 0.100146 GGTACTCGTAGGGCTTCGTG 59.900 60.000 0.00 0.00 0.00 4.35
991 1037 0.100146 GTACTCGTAGGGCTTCGTGG 59.900 60.000 0.00 0.00 0.00 4.94
992 1038 1.660560 TACTCGTAGGGCTTCGTGGC 61.661 60.000 0.00 0.00 40.96 5.01
993 1039 4.124351 TCGTAGGGCTTCGTGGCG 62.124 66.667 0.00 0.00 42.84 5.69
1016 1062 0.687757 CCCATGGAGACGAGGAAGGA 60.688 60.000 15.22 0.00 0.00 3.36
1035 1081 0.460987 AAATCCTGGAGCTTCGCGAG 60.461 55.000 9.59 4.97 0.00 5.03
1088 1134 1.153745 CCGACGAGGGCTCTTTGAG 60.154 63.158 0.00 0.00 35.97 3.02
1128 1174 1.734655 TTTTGGAGTCCTCTCTGCCT 58.265 50.000 11.33 0.00 40.29 4.75
1209 1256 5.794894 AGTTCATTTGTACTCCACCACTAG 58.205 41.667 0.00 0.00 0.00 2.57
1287 1341 8.379428 AGTTTTTCCATTGCTAAATATTCCCT 57.621 30.769 0.00 0.00 0.00 4.20
1491 1547 5.295787 GGATTCGTATTTGACATAGTTGCCA 59.704 40.000 0.00 0.00 0.00 4.92
1573 1630 7.502226 CACAATATGCCTCTAAATACAAAGGGA 59.498 37.037 0.00 0.00 33.50 4.20
1826 1906 1.140852 CCTTCAGATATTCGTGGGCCA 59.859 52.381 0.00 0.00 0.00 5.36
2008 2088 6.544197 TGTTTCAAGAGTGCAATAGTTTACCA 59.456 34.615 0.00 0.00 0.00 3.25
2114 2208 8.327429 AGAAAAACAAAACATGAACGCTTATTG 58.673 29.630 0.00 0.00 0.00 1.90
2141 2235 5.506708 GCTACCAAAAAGGAGAGGGATAAA 58.493 41.667 0.00 0.00 41.22 1.40
2183 2277 6.040504 GGTTCCCAGGTGGATGAATATTAAAC 59.959 42.308 0.00 0.00 44.66 2.01
2188 2282 8.217799 CCCAGGTGGATGAATATTAAACTAAGA 58.782 37.037 0.00 0.00 37.39 2.10
2189 2283 9.627123 CCAGGTGGATGAATATTAAACTAAGAA 57.373 33.333 0.00 0.00 37.39 2.52
2351 2447 6.487689 TTTGTGAAAACATTTTGGAACACC 57.512 33.333 0.00 0.00 39.29 4.16
2356 2456 7.095017 TGTGAAAACATTTTGGAACACCTTTTC 60.095 33.333 0.00 0.00 39.29 2.29
2682 2785 8.856153 AGTGGTTAATTGTTTTCTTTGGTTTT 57.144 26.923 0.00 0.00 0.00 2.43
2711 2814 6.810182 GCAAGTTCTATGAATTGCTTGAATGT 59.190 34.615 0.00 0.00 43.59 2.71
2723 2826 5.295431 TGCTTGAATGTTCGGTAATTCTG 57.705 39.130 0.00 0.00 34.52 3.02
2902 3005 8.540388 ACAATAACTTCAGATAGCCACTTAAGA 58.460 33.333 10.09 0.00 0.00 2.10
2929 3032 7.479980 TGCTGTTTTTATTCATAGGTACATGC 58.520 34.615 0.00 0.00 0.00 4.06
3083 3186 6.206634 GGGAACTACACATGATGTTCTCAAAA 59.793 38.462 0.00 0.00 43.19 2.44
3170 3285 5.054477 TCAGCTTCTTAACTACTTTTGCGT 58.946 37.500 0.00 0.00 0.00 5.24
3225 3346 3.052329 AGAATCCTCCTCCTTGATTCCC 58.948 50.000 7.61 0.00 43.36 3.97
3227 3348 0.421495 TCCTCCTCCTTGATTCCCCA 59.579 55.000 0.00 0.00 0.00 4.96
3293 3415 6.201044 CGATTTTACTTCCAGTAGCCACATAG 59.799 42.308 0.00 0.00 31.47 2.23
3295 3417 2.187958 ACTTCCAGTAGCCACATAGCA 58.812 47.619 0.00 0.00 34.23 3.49
3315 3437 4.158394 AGCATGCAAATACCCACTTTACTG 59.842 41.667 21.98 0.00 0.00 2.74
3551 3674 0.400213 TTGAAGTCAACCTCGGCCAT 59.600 50.000 2.24 0.00 0.00 4.40
3646 3769 8.863049 CAGTACAATCTGCCAACATTTAAAATC 58.137 33.333 0.00 0.00 0.00 2.17
3658 3781 5.003804 ACATTTAAAATCGCTCAGTCAGGT 58.996 37.500 0.00 0.00 0.00 4.00
3682 3805 4.280677 TGCTTGAAAAAGATTCGGATTGGT 59.719 37.500 0.00 0.00 0.00 3.67
3723 3846 7.272037 TCAGGTTGGTTGAAGACTAAATTTC 57.728 36.000 0.00 0.00 29.93 2.17
3961 4084 3.244044 CCTCTTCCTACAGCCTTGATAGC 60.244 52.174 0.00 0.00 0.00 2.97
3971 4094 0.105039 CCTTGATAGCCCGTGTCCTC 59.895 60.000 0.00 0.00 0.00 3.71
4170 4293 7.014134 TCAGGTGAAGTCTTATTTTGCATTTCA 59.986 33.333 0.00 0.00 0.00 2.69
4185 4308 5.688823 TGCATTTCAACAACTGATAACTCG 58.311 37.500 0.00 0.00 32.78 4.18
4197 4320 8.904834 ACAACTGATAACTCGTAACTGAGATAT 58.095 33.333 0.00 0.00 39.35 1.63
4224 4348 4.343526 ACCATATGTCATCTGAGACCACTC 59.656 45.833 1.24 0.00 42.88 3.51
4279 4403 4.742417 TCACAAAACCAATCAATATGGCG 58.258 39.130 0.00 0.00 41.89 5.69
4336 4463 1.470098 CACAGAAAGCAGGGGAATTCG 59.530 52.381 0.00 0.00 0.00 3.34
4344 4471 2.304761 AGCAGGGGAATTCGTTGAAGTA 59.695 45.455 0.00 0.00 0.00 2.24
4375 4502 2.572209 TTTTGGCCTGTACCCTGTAC 57.428 50.000 3.32 0.00 0.00 2.90
4376 4503 0.694196 TTTGGCCTGTACCCTGTACC 59.306 55.000 3.32 0.00 0.00 3.34
4377 4504 1.202769 TTGGCCTGTACCCTGTACCC 61.203 60.000 3.32 0.00 0.00 3.69
4379 4506 1.623542 GGCCTGTACCCTGTACCCTG 61.624 65.000 0.00 0.00 0.00 4.45
4381 4508 1.620524 GCCTGTACCCTGTACCCTGTA 60.621 57.143 2.22 0.00 0.00 2.74
4382 4509 2.385803 CCTGTACCCTGTACCCTGTAG 58.614 57.143 2.22 0.00 0.00 2.74
4383 4510 2.385803 CTGTACCCTGTACCCTGTAGG 58.614 57.143 2.22 0.00 43.78 3.18
4384 4511 1.117994 GTACCCTGTACCCTGTAGGC 58.882 60.000 0.00 0.00 40.58 3.93
4385 4512 0.031817 TACCCTGTACCCTGTAGGCC 60.032 60.000 0.00 0.00 40.58 5.19
4387 4514 1.338136 CCCTGTACCCTGTAGGCCTG 61.338 65.000 17.99 0.00 40.58 4.85
4388 4515 0.617820 CCTGTACCCTGTAGGCCTGT 60.618 60.000 17.99 6.73 40.58 4.00
4389 4516 1.342674 CCTGTACCCTGTAGGCCTGTA 60.343 57.143 17.99 5.54 40.58 2.74
4390 4517 1.755380 CTGTACCCTGTAGGCCTGTAC 59.245 57.143 17.99 18.52 40.58 2.90
4391 4518 1.117994 GTACCCTGTAGGCCTGTACC 58.882 60.000 17.99 0.57 40.58 3.34
4392 4519 0.031817 TACCCTGTAGGCCTGTACCC 60.032 60.000 17.99 0.00 40.58 3.69
4393 4520 1.003051 CCCTGTAGGCCTGTACCCT 59.997 63.158 17.99 0.00 36.47 4.34
4394 4521 1.338136 CCCTGTAGGCCTGTACCCTG 61.338 65.000 17.99 2.08 33.88 4.45
4395 4522 0.617820 CCTGTAGGCCTGTACCCTGT 60.618 60.000 17.99 0.00 33.88 4.00
4396 4523 1.342674 CCTGTAGGCCTGTACCCTGTA 60.343 57.143 17.99 0.00 33.88 2.74
4397 4524 1.755380 CTGTAGGCCTGTACCCTGTAC 59.245 57.143 17.99 1.93 33.88 2.90
4425 4733 1.341209 GCCTTTTTGTAGCCTGCTTGT 59.659 47.619 0.00 0.00 0.00 3.16
4426 4734 2.224042 GCCTTTTTGTAGCCTGCTTGTT 60.224 45.455 0.00 0.00 0.00 2.83
4427 4735 3.741075 GCCTTTTTGTAGCCTGCTTGTTT 60.741 43.478 0.00 0.00 0.00 2.83
4428 4736 4.441792 CCTTTTTGTAGCCTGCTTGTTTT 58.558 39.130 0.00 0.00 0.00 2.43
4429 4737 4.875536 CCTTTTTGTAGCCTGCTTGTTTTT 59.124 37.500 0.00 0.00 0.00 1.94
4430 4738 5.220643 CCTTTTTGTAGCCTGCTTGTTTTTG 60.221 40.000 0.00 0.00 0.00 2.44
4435 4749 2.631267 AGCCTGCTTGTTTTTGGTTTG 58.369 42.857 0.00 0.00 0.00 2.93
4551 4865 1.599542 GGCATGAGGTAACAATCGAGC 59.400 52.381 0.00 0.00 41.41 5.03
4601 4915 8.154856 GCCTAACTAGGATATGAACATTTACCA 58.845 37.037 6.98 0.00 46.63 3.25
4753 5067 5.071115 AGACTGGACATAAGGATTAAGCTCC 59.929 44.000 0.00 0.00 32.17 4.70
4779 5093 2.017049 CCTTTAGGGCTCATTCGGTTG 58.983 52.381 0.00 0.00 0.00 3.77
4848 5162 3.370315 CCCTCTCTCCACTTCAATCCTTG 60.370 52.174 0.00 0.00 0.00 3.61
4851 5165 1.635487 TCTCCACTTCAATCCTTGGGG 59.365 52.381 0.00 0.00 0.00 4.96
4864 5178 2.925653 TCCTTGGGGATTTTCCATGAGA 59.074 45.455 0.00 0.00 38.64 3.27
4903 5217 7.646548 AAGAATCCTTAGAAATTAGGCCAAC 57.353 36.000 5.01 0.00 0.00 3.77
4907 5221 4.644685 TCCTTAGAAATTAGGCCAACATGC 59.355 41.667 5.01 0.00 0.00 4.06
4930 5244 8.922931 TGCACACAATCATATGGAATTAGTAT 57.077 30.769 2.13 0.00 0.00 2.12
5001 5315 4.524714 TCCAAAAATCCTGCAAACCGAATA 59.475 37.500 0.00 0.00 0.00 1.75
5173 5487 4.037208 CCATGGCTGATCAACTTTATGTCC 59.963 45.833 0.00 0.00 0.00 4.02
5243 5557 7.571080 AGCTAAACCTAGTCTACATCAGTAC 57.429 40.000 0.00 0.00 0.00 2.73
5264 5578 9.526713 CAGTACATATGATATTAGTGATGAGGC 57.473 37.037 10.38 0.00 0.00 4.70
5304 5618 6.713762 TCAAGTCACAACATGGATTTCTTT 57.286 33.333 0.00 0.00 0.00 2.52
5305 5619 7.111247 TCAAGTCACAACATGGATTTCTTTT 57.889 32.000 0.00 0.00 0.00 2.27
5496 5812 2.260247 GCATTCTGCTGACAAGGCA 58.740 52.632 0.00 0.00 40.96 4.75
5506 5822 1.605710 CTGACAAGGCAAAGGTGACTG 59.394 52.381 0.00 0.00 45.00 3.51
5572 5888 4.030216 TGTACATAATCCTCTGGCAGTCA 58.970 43.478 15.27 0.00 0.00 3.41
5573 5889 3.550437 ACATAATCCTCTGGCAGTCAC 57.450 47.619 15.27 0.00 0.00 3.67
5574 5890 3.110705 ACATAATCCTCTGGCAGTCACT 58.889 45.455 15.27 0.00 0.00 3.41
5610 5926 5.052481 CCATGCAGTGAGATTATCGAAGAA 58.948 41.667 0.00 0.00 43.58 2.52
5638 5954 6.729187 AGTGAACAGAACACATCTTTTAAGC 58.271 36.000 0.00 0.00 40.25 3.09
5721 6037 9.660180 GAAAATAAGTCTTTCACTAGTCCTGAT 57.340 33.333 0.00 0.00 32.30 2.90
5759 6075 3.668656 GCACAGCAAGTCGAAAATAAACC 59.331 43.478 0.00 0.00 0.00 3.27
5761 6077 3.810941 ACAGCAAGTCGAAAATAAACCGA 59.189 39.130 0.00 0.00 0.00 4.69
5892 6208 0.320374 ATGCAACGTCGGAAGAAGGA 59.680 50.000 0.00 0.00 44.16 3.36
5974 6290 1.595311 TGGGTATCCTCTTGCCACAT 58.405 50.000 0.00 0.00 0.00 3.21
6004 6320 7.348815 TCATGATTCAAGGTCCACATTAAGAT 58.651 34.615 0.00 0.00 0.00 2.40
6109 6427 5.770663 TCTTCCTTTATGTAGAGAGATCCGG 59.229 44.000 0.00 0.00 0.00 5.14
6121 6439 6.235231 AGAGAGATCCGGCAAACTTATTTA 57.765 37.500 0.00 0.00 0.00 1.40
6122 6440 6.650120 AGAGAGATCCGGCAAACTTATTTAA 58.350 36.000 0.00 0.00 0.00 1.52
6183 6501 5.864628 AGCGAAAGTGATTCTCCTAAAAC 57.135 39.130 0.00 0.00 35.79 2.43
6226 6544 4.090729 CGACGACAAAATCCATGACATTG 58.909 43.478 0.00 0.00 0.00 2.82
6287 6605 1.069204 GCGATGGCCTCTATCAGAACA 59.931 52.381 3.32 0.00 0.00 3.18
6297 6615 5.551233 CCTCTATCAGAACAGTTTCCACAA 58.449 41.667 0.00 0.00 31.28 3.33
6301 6619 4.163441 TCAGAACAGTTTCCACAATGGA 57.837 40.909 0.00 0.00 46.61 3.41
6362 6680 1.421410 CTGCTTAACGCCTAGCACCG 61.421 60.000 2.24 0.00 42.12 4.94
6382 6700 2.287668 CGTAGGATGACGAGAACCCATC 60.288 54.545 0.00 0.00 45.82 3.51
6404 6722 1.972588 AGGGGCTCTCATGGTTAACT 58.027 50.000 5.42 0.00 0.00 2.24
6410 6728 4.384647 GGGCTCTCATGGTTAACTCTTGAT 60.385 45.833 5.42 0.00 0.00 2.57
6411 6729 5.189180 GGCTCTCATGGTTAACTCTTGATT 58.811 41.667 5.42 0.00 0.00 2.57
6472 6790 3.754219 TGGAACATGGGGATCAAATGA 57.246 42.857 0.00 0.00 0.00 2.57
6694 7014 6.395629 ACAGATGATTTGCTCAAAAGATTGG 58.604 36.000 0.00 0.00 37.44 3.16
6717 7037 5.049336 GGCTTCTTCTCTTTTACTCCACAAC 60.049 44.000 0.00 0.00 0.00 3.32
6775 7804 7.609760 TTATAACTTTGCGAGATCACAACAT 57.390 32.000 0.00 0.00 0.00 2.71
6937 7977 3.054802 CACTCCATGGCTTACTTCCTCTT 60.055 47.826 6.96 0.00 0.00 2.85
6954 7994 0.099968 CTTCATTGCCATCAGTGCCG 59.900 55.000 0.00 0.00 30.90 5.69
6970 8010 0.443478 GCCGCCATTGTTTTCATTGC 59.557 50.000 0.00 0.00 32.00 3.56
6982 8034 2.676632 TTCATTGCCATCCATTGCAC 57.323 45.000 0.00 0.00 37.18 4.57
6988 8040 1.305129 CCATCCATTGCACCACCCA 60.305 57.895 0.00 0.00 0.00 4.51
7031 8085 4.495911 TGCTTCTCATGTCGCTAGATAG 57.504 45.455 0.00 0.00 0.00 2.08
7043 8097 1.004044 GCTAGATAGCCATGGCACCAT 59.996 52.381 37.18 25.77 43.39 3.55
7067 8121 1.061735 TGCCTCCCATACCACCTATGA 60.062 52.381 0.00 0.00 35.06 2.15
7069 8123 1.618837 CCTCCCATACCACCTATGACG 59.381 57.143 0.00 0.00 35.06 4.35
7177 8231 0.948623 CCACCAACACTTGATCGCGA 60.949 55.000 13.09 13.09 0.00 5.87
7193 8247 2.228103 TCGCGACACTCTCAAAGTATGT 59.772 45.455 3.71 0.00 36.07 2.29
7265 8319 3.258872 CCTTGTTCAATGCCCTTGATTCA 59.741 43.478 0.21 1.65 43.30 2.57
7297 8351 1.650528 CACCTTCCTCTCCTCAACCT 58.349 55.000 0.00 0.00 0.00 3.50
7315 8372 1.475403 CTCTGCCTTCTCCTCGGTTA 58.525 55.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.783256 GTTTGCTAAGTTTGACCGAATTTATAT 57.217 29.630 0.00 0.00 0.00 0.86
36 37 9.005777 AGTTTGCTAAGTTTGACCGAATTTATA 57.994 29.630 0.00 0.00 0.00 0.98
37 38 7.882179 AGTTTGCTAAGTTTGACCGAATTTAT 58.118 30.769 0.00 0.00 0.00 1.40
38 39 7.266922 AGTTTGCTAAGTTTGACCGAATTTA 57.733 32.000 0.00 0.00 0.00 1.40
39 40 6.144078 AGTTTGCTAAGTTTGACCGAATTT 57.856 33.333 0.00 0.00 0.00 1.82
40 41 5.767816 AGTTTGCTAAGTTTGACCGAATT 57.232 34.783 0.00 0.00 0.00 2.17
41 42 5.767816 AAGTTTGCTAAGTTTGACCGAAT 57.232 34.783 0.00 0.00 0.00 3.34
42 43 5.570234 AAAGTTTGCTAAGTTTGACCGAA 57.430 34.783 12.06 0.00 35.95 4.30
49 50 7.094377 TGTCTGAAGTCAAAGTTTGCTAAGTTT 60.094 33.333 10.90 7.74 37.37 2.66
50 51 6.374333 TGTCTGAAGTCAAAGTTTGCTAAGTT 59.626 34.615 10.90 3.39 0.00 2.66
51 52 5.880332 TGTCTGAAGTCAAAGTTTGCTAAGT 59.120 36.000 10.90 0.00 0.00 2.24
52 53 6.363577 TGTCTGAAGTCAAAGTTTGCTAAG 57.636 37.500 10.90 11.57 0.00 2.18
53 54 6.751514 TTGTCTGAAGTCAAAGTTTGCTAA 57.248 33.333 10.90 3.76 0.00 3.09
54 55 6.677920 GCTTTGTCTGAAGTCAAAGTTTGCTA 60.678 38.462 22.33 0.00 45.88 3.49
55 56 5.643379 TTTGTCTGAAGTCAAAGTTTGCT 57.357 34.783 10.90 8.49 31.49 3.91
56 57 4.266265 GCTTTGTCTGAAGTCAAAGTTTGC 59.734 41.667 22.33 11.50 45.88 3.68
57 58 5.644644 AGCTTTGTCTGAAGTCAAAGTTTG 58.355 37.500 22.33 9.44 45.88 2.93
58 59 5.904362 AGCTTTGTCTGAAGTCAAAGTTT 57.096 34.783 22.33 13.42 45.88 2.66
59 60 7.067494 ACATTAGCTTTGTCTGAAGTCAAAGTT 59.933 33.333 22.33 20.14 45.88 2.66
60 61 6.543831 ACATTAGCTTTGTCTGAAGTCAAAGT 59.456 34.615 22.33 15.15 45.88 2.66
61 62 6.854892 CACATTAGCTTTGTCTGAAGTCAAAG 59.145 38.462 19.34 19.34 46.44 2.77
62 63 6.728200 CACATTAGCTTTGTCTGAAGTCAAA 58.272 36.000 0.00 3.36 33.44 2.69
63 64 5.277974 GCACATTAGCTTTGTCTGAAGTCAA 60.278 40.000 0.00 0.00 0.00 3.18
64 65 4.214119 GCACATTAGCTTTGTCTGAAGTCA 59.786 41.667 0.00 0.00 0.00 3.41
65 66 4.667668 CGCACATTAGCTTTGTCTGAAGTC 60.668 45.833 0.00 0.00 0.00 3.01
66 67 3.187227 CGCACATTAGCTTTGTCTGAAGT 59.813 43.478 0.00 0.00 0.00 3.01
67 68 3.425359 CCGCACATTAGCTTTGTCTGAAG 60.425 47.826 0.00 0.00 0.00 3.02
68 69 2.483877 CCGCACATTAGCTTTGTCTGAA 59.516 45.455 0.00 0.00 0.00 3.02
69 70 2.076100 CCGCACATTAGCTTTGTCTGA 58.924 47.619 0.00 0.00 0.00 3.27
70 71 2.076100 TCCGCACATTAGCTTTGTCTG 58.924 47.619 0.00 0.00 0.00 3.51
71 72 2.289694 ACTCCGCACATTAGCTTTGTCT 60.290 45.455 0.00 0.00 0.00 3.41
72 73 2.076863 ACTCCGCACATTAGCTTTGTC 58.923 47.619 0.00 0.00 0.00 3.18
73 74 2.185004 ACTCCGCACATTAGCTTTGT 57.815 45.000 0.00 0.00 0.00 2.83
74 75 4.678509 TTTACTCCGCACATTAGCTTTG 57.321 40.909 0.00 0.00 0.00 2.77
75 76 5.699097 TTTTTACTCCGCACATTAGCTTT 57.301 34.783 0.00 0.00 0.00 3.51
94 95 5.011738 TGTGAATACTCTCTCGGGTCTTTTT 59.988 40.000 0.00 0.00 0.00 1.94
95 96 4.527038 TGTGAATACTCTCTCGGGTCTTTT 59.473 41.667 0.00 0.00 0.00 2.27
96 97 4.087182 TGTGAATACTCTCTCGGGTCTTT 58.913 43.478 0.00 0.00 0.00 2.52
97 98 3.698289 TGTGAATACTCTCTCGGGTCTT 58.302 45.455 0.00 0.00 0.00 3.01
98 99 3.367646 TGTGAATACTCTCTCGGGTCT 57.632 47.619 0.00 0.00 0.00 3.85
99 100 5.968528 ATATGTGAATACTCTCTCGGGTC 57.031 43.478 0.00 0.00 0.00 4.46
100 101 5.598830 ACAATATGTGAATACTCTCTCGGGT 59.401 40.000 0.00 0.00 0.00 5.28
101 102 6.015856 AGACAATATGTGAATACTCTCTCGGG 60.016 42.308 0.00 0.00 0.00 5.14
102 103 6.976088 AGACAATATGTGAATACTCTCTCGG 58.024 40.000 0.00 0.00 0.00 4.63
103 104 7.918033 ACAAGACAATATGTGAATACTCTCTCG 59.082 37.037 0.00 0.00 0.00 4.04
119 120 6.711194 TCGGAATTGGTGTTTACAAGACAATA 59.289 34.615 8.27 0.00 31.37 1.90
131 132 9.203421 GAAAATTCTTATTTCGGAATTGGTGTT 57.797 29.630 0.00 0.00 40.58 3.32
209 210 3.733224 CGCTTGTGTCTATACTGATGCTC 59.267 47.826 0.00 0.00 0.00 4.26
210 211 3.711086 CGCTTGTGTCTATACTGATGCT 58.289 45.455 0.00 0.00 0.00 3.79
211 212 2.219674 GCGCTTGTGTCTATACTGATGC 59.780 50.000 0.00 0.00 0.00 3.91
212 213 3.711086 AGCGCTTGTGTCTATACTGATG 58.289 45.455 2.64 0.00 0.00 3.07
213 214 3.381590 TGAGCGCTTGTGTCTATACTGAT 59.618 43.478 13.26 0.00 0.00 2.90
214 215 2.752903 TGAGCGCTTGTGTCTATACTGA 59.247 45.455 13.26 0.00 0.00 3.41
215 216 3.150848 TGAGCGCTTGTGTCTATACTG 57.849 47.619 13.26 0.00 0.00 2.74
216 217 5.713792 ATATGAGCGCTTGTGTCTATACT 57.286 39.130 13.26 0.00 0.00 2.12
217 218 6.305877 GTGTATATGAGCGCTTGTGTCTATAC 59.694 42.308 13.26 15.61 0.00 1.47
218 219 6.379386 GTGTATATGAGCGCTTGTGTCTATA 58.621 40.000 13.26 4.61 0.00 1.31
219 220 5.223382 GTGTATATGAGCGCTTGTGTCTAT 58.777 41.667 13.26 5.57 0.00 1.98
220 221 4.607955 GTGTATATGAGCGCTTGTGTCTA 58.392 43.478 13.26 0.00 0.00 2.59
221 222 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
223 224 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
224 225 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
225 226 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
226 227 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
227 228 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
228 229 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
231 232 0.701303 GTACGCGCGTGTATATGAGC 59.299 55.000 42.78 16.54 35.57 4.26
232 233 1.707117 GTGTACGCGCGTGTATATGAG 59.293 52.381 42.78 7.98 0.00 2.90
233 234 1.331447 AGTGTACGCGCGTGTATATGA 59.669 47.619 42.78 20.80 0.00 2.15
234 235 1.707117 GAGTGTACGCGCGTGTATATG 59.293 52.381 42.78 9.64 0.00 1.78
235 236 1.331447 TGAGTGTACGCGCGTGTATAT 59.669 47.619 42.78 25.04 0.00 0.86
236 237 0.726256 TGAGTGTACGCGCGTGTATA 59.274 50.000 42.78 27.61 0.00 1.47
237 238 0.795735 GTGAGTGTACGCGCGTGTAT 60.796 55.000 42.78 26.12 0.00 2.29
238 239 1.440850 GTGAGTGTACGCGCGTGTA 60.441 57.895 42.78 27.35 0.00 2.90
239 240 2.728383 GTGAGTGTACGCGCGTGT 60.728 61.111 42.78 29.73 0.00 4.49
240 241 3.467119 GGTGAGTGTACGCGCGTG 61.467 66.667 42.78 19.78 0.00 5.34
241 242 4.712425 GGGTGAGTGTACGCGCGT 62.712 66.667 39.05 39.05 0.00 6.01
243 244 2.012902 ATAGGGGTGAGTGTACGCGC 62.013 60.000 5.73 0.00 34.64 6.86
244 245 0.248907 CATAGGGGTGAGTGTACGCG 60.249 60.000 3.53 3.53 34.64 6.01
245 246 1.108776 TCATAGGGGTGAGTGTACGC 58.891 55.000 0.00 0.00 0.00 4.42
246 247 2.494471 TGTTCATAGGGGTGAGTGTACG 59.506 50.000 0.00 0.00 0.00 3.67
247 248 3.259876 TGTGTTCATAGGGGTGAGTGTAC 59.740 47.826 0.00 0.00 0.00 2.90
248 249 3.259876 GTGTGTTCATAGGGGTGAGTGTA 59.740 47.826 0.00 0.00 0.00 2.90
249 250 2.038557 GTGTGTTCATAGGGGTGAGTGT 59.961 50.000 0.00 0.00 0.00 3.55
250 251 2.038426 TGTGTGTTCATAGGGGTGAGTG 59.962 50.000 0.00 0.00 0.00 3.51
251 252 2.038557 GTGTGTGTTCATAGGGGTGAGT 59.961 50.000 0.00 0.00 0.00 3.41
252 253 2.699954 GTGTGTGTTCATAGGGGTGAG 58.300 52.381 0.00 0.00 0.00 3.51
253 254 1.001520 CGTGTGTGTTCATAGGGGTGA 59.998 52.381 0.00 0.00 0.00 4.02
254 255 1.438651 CGTGTGTGTTCATAGGGGTG 58.561 55.000 0.00 0.00 0.00 4.61
255 256 0.321298 GCGTGTGTGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
256 257 0.321210 TGCGTGTGTGTTCATAGGGG 60.321 55.000 0.00 0.00 0.00 4.79
257 258 0.796312 GTGCGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
258 259 1.194547 GTGTGCGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
259 260 1.194547 GGTGTGCGTGTGTGTTCATAG 59.805 52.381 0.00 0.00 0.00 2.23
260 261 1.222300 GGTGTGCGTGTGTGTTCATA 58.778 50.000 0.00 0.00 0.00 2.15
261 262 1.444119 GGGTGTGCGTGTGTGTTCAT 61.444 55.000 0.00 0.00 0.00 2.57
262 263 2.109739 GGGTGTGCGTGTGTGTTCA 61.110 57.895 0.00 0.00 0.00 3.18
263 264 0.531090 TAGGGTGTGCGTGTGTGTTC 60.531 55.000 0.00 0.00 0.00 3.18
264 265 0.812412 GTAGGGTGTGCGTGTGTGTT 60.812 55.000 0.00 0.00 0.00 3.32
265 266 1.227438 GTAGGGTGTGCGTGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
266 267 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
267 268 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
268 269 1.537814 TAGGGTAGGGTGTGCGTGTG 61.538 60.000 0.00 0.00 0.00 3.82
269 270 0.616679 ATAGGGTAGGGTGTGCGTGT 60.617 55.000 0.00 0.00 0.00 4.49
270 271 0.179084 CATAGGGTAGGGTGTGCGTG 60.179 60.000 0.00 0.00 0.00 5.34
271 272 0.324923 TCATAGGGTAGGGTGTGCGT 60.325 55.000 0.00 0.00 0.00 5.24
272 273 0.389391 CTCATAGGGTAGGGTGTGCG 59.611 60.000 0.00 0.00 0.00 5.34
273 274 0.106894 GCTCATAGGGTAGGGTGTGC 59.893 60.000 0.00 0.00 0.00 4.57
274 275 1.139058 GTGCTCATAGGGTAGGGTGTG 59.861 57.143 0.00 0.00 0.00 3.82
275 276 1.497161 GTGCTCATAGGGTAGGGTGT 58.503 55.000 0.00 0.00 0.00 4.16
276 277 0.759346 GGTGCTCATAGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
277 278 0.642710 AGGTGCTCATAGGGTAGGGT 59.357 55.000 0.00 0.00 0.00 4.34
278 279 1.343069 GAGGTGCTCATAGGGTAGGG 58.657 60.000 0.00 0.00 0.00 3.53
279 280 1.343069 GGAGGTGCTCATAGGGTAGG 58.657 60.000 0.00 0.00 31.08 3.18
280 281 0.962489 CGGAGGTGCTCATAGGGTAG 59.038 60.000 0.00 0.00 31.08 3.18
281 282 0.554305 TCGGAGGTGCTCATAGGGTA 59.446 55.000 0.00 0.00 31.08 3.69
282 283 0.325296 TTCGGAGGTGCTCATAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
283 284 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
284 285 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
285 286 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
286 287 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
287 288 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
288 289 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
289 290 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
290 291 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
291 292 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
292 293 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
293 294 0.832135 TGGCTCAGTCTTTCGGAGGT 60.832 55.000 0.00 0.00 38.48 3.85
294 295 0.321671 TTGGCTCAGTCTTTCGGAGG 59.678 55.000 0.00 0.00 38.48 4.30
295 296 1.001406 AGTTGGCTCAGTCTTTCGGAG 59.999 52.381 0.00 0.00 40.44 4.63
296 297 1.048601 AGTTGGCTCAGTCTTTCGGA 58.951 50.000 0.00 0.00 0.00 4.55
297 298 1.801178 GAAGTTGGCTCAGTCTTTCGG 59.199 52.381 0.00 0.00 0.00 4.30
298 299 2.760374 AGAAGTTGGCTCAGTCTTTCG 58.240 47.619 0.00 0.00 0.00 3.46
299 300 6.809630 ATTAAGAAGTTGGCTCAGTCTTTC 57.190 37.500 0.00 0.00 31.28 2.62
300 301 7.001073 AGAATTAAGAAGTTGGCTCAGTCTTT 58.999 34.615 0.00 0.00 31.28 2.52
301 302 6.538263 AGAATTAAGAAGTTGGCTCAGTCTT 58.462 36.000 0.00 0.00 33.32 3.01
302 303 6.120507 AGAATTAAGAAGTTGGCTCAGTCT 57.879 37.500 0.00 0.00 0.00 3.24
303 304 6.428159 TCAAGAATTAAGAAGTTGGCTCAGTC 59.572 38.462 0.00 0.00 0.00 3.51
304 305 6.299141 TCAAGAATTAAGAAGTTGGCTCAGT 58.701 36.000 0.00 0.00 0.00 3.41
305 306 6.808008 TCAAGAATTAAGAAGTTGGCTCAG 57.192 37.500 0.00 0.00 0.00 3.35
306 307 7.765695 AATCAAGAATTAAGAAGTTGGCTCA 57.234 32.000 0.00 0.00 0.00 4.26
386 398 1.432657 GAGCCGACCGAGGAGTTAC 59.567 63.158 0.00 0.00 0.00 2.50
583 606 3.550437 TTAGGAAAGCATCTGAGCCTC 57.450 47.619 0.00 0.00 34.23 4.70
595 618 3.303395 GCGCTGGATCGAAATTAGGAAAG 60.303 47.826 0.00 0.00 0.00 2.62
615 639 1.959985 ACAGAGGAGATACCAGATGCG 59.040 52.381 0.00 0.00 42.04 4.73
616 640 3.244044 GGAACAGAGGAGATACCAGATGC 60.244 52.174 0.00 0.00 42.04 3.91
624 648 3.245622 TGAGTGTGGGAACAGAGGAGATA 60.246 47.826 0.00 0.00 44.46 1.98
639 663 1.025113 CAGAGCAGCCCATGAGTGTG 61.025 60.000 0.00 0.00 0.00 3.82
640 664 1.298993 CAGAGCAGCCCATGAGTGT 59.701 57.895 0.00 0.00 0.00 3.55
673 697 2.639347 TCCAATCCAAGCAGAGACAGAA 59.361 45.455 0.00 0.00 0.00 3.02
674 698 2.259917 TCCAATCCAAGCAGAGACAGA 58.740 47.619 0.00 0.00 0.00 3.41
678 702 2.577563 TCCAATCCAATCCAAGCAGAGA 59.422 45.455 0.00 0.00 0.00 3.10
679 703 3.008835 TCCAATCCAATCCAAGCAGAG 57.991 47.619 0.00 0.00 0.00 3.35
795 834 7.175347 AGAAAGGAAAGAATCATTAAAGGCC 57.825 36.000 0.00 0.00 30.47 5.19
822 861 5.155278 TCCAAATCTAAAAGCGTCAGGTA 57.845 39.130 0.00 0.00 0.00 3.08
823 862 4.015872 TCCAAATCTAAAAGCGTCAGGT 57.984 40.909 0.00 0.00 0.00 4.00
824 863 4.672801 GCTTCCAAATCTAAAAGCGTCAGG 60.673 45.833 0.00 0.00 35.29 3.86
825 864 4.406943 GCTTCCAAATCTAAAAGCGTCAG 58.593 43.478 0.00 0.00 35.29 3.51
832 871 6.345096 CCAGAAAGGCTTCCAAATCTAAAA 57.655 37.500 0.00 0.00 31.28 1.52
854 893 4.547367 CCGAAGATCCCCACGGCC 62.547 72.222 0.00 0.00 38.98 6.13
857 896 3.447025 GAGGCCGAAGATCCCCACG 62.447 68.421 0.00 0.00 0.00 4.94
869 908 3.047877 GGAAACCACACGAGGCCG 61.048 66.667 0.00 0.00 42.50 6.13
873 912 3.259064 ACGAATATGGAAACCACACGAG 58.741 45.455 0.00 0.00 35.80 4.18
882 925 6.318628 CAAACCGATCAAACGAATATGGAAA 58.681 36.000 0.00 0.00 35.09 3.13
886 929 5.229921 ACCAAACCGATCAAACGAATATG 57.770 39.130 0.00 0.00 35.09 1.78
921 964 4.173256 AGTTCTGAAAACCAAAAACGCAG 58.827 39.130 0.00 0.00 0.00 5.18
939 982 5.998363 ACCAACACCAGAAAGATAAGAGTTC 59.002 40.000 0.00 0.00 0.00 3.01
941 984 5.513267 GGACCAACACCAGAAAGATAAGAGT 60.513 44.000 0.00 0.00 0.00 3.24
955 998 1.277273 GTACCTACCTGGACCAACACC 59.723 57.143 0.00 0.00 39.71 4.16
974 1020 3.003113 GCCACGAAGCCCTACGAGT 62.003 63.158 0.00 0.00 0.00 4.18
975 1021 2.202756 GCCACGAAGCCCTACGAG 60.203 66.667 0.00 0.00 0.00 4.18
976 1022 4.124351 CGCCACGAAGCCCTACGA 62.124 66.667 0.00 0.00 0.00 3.43
993 1039 4.899239 CTCGTCTCCATGGGCGCC 62.899 72.222 21.18 21.18 0.00 6.53
994 1040 4.899239 CCTCGTCTCCATGGGCGC 62.899 72.222 13.02 0.00 0.00 6.53
995 1041 2.635229 CTTCCTCGTCTCCATGGGCG 62.635 65.000 13.02 14.22 0.00 6.13
1029 1075 3.610791 CTTGTCCAGACGCTCGCGA 62.611 63.158 18.98 9.26 42.83 5.87
1050 1096 1.227205 GAGATCAGAGCACGCCAGG 60.227 63.158 0.00 0.00 0.00 4.45
1119 1165 1.516892 GTCAGAGCCAGGCAGAGAG 59.483 63.158 15.80 0.00 0.00 3.20
1128 1174 0.178992 CCAAACCTTGGTCAGAGCCA 60.179 55.000 0.00 0.00 45.93 4.75
1344 1398 7.272978 GGAGGTAGTACTATTGAATCTTGCAA 58.727 38.462 5.75 0.00 0.00 4.08
1535 1592 7.062322 AGAGGCATATTGTGACCATGATTTTA 58.938 34.615 0.00 0.00 36.01 1.52
1536 1593 5.895534 AGAGGCATATTGTGACCATGATTTT 59.104 36.000 0.00 0.00 36.01 1.82
1542 1599 7.517320 TGTATTTAGAGGCATATTGTGACCAT 58.483 34.615 0.00 0.00 36.01 3.55
1556 1613 8.774586 CGATGTTATTCCCTTTGTATTTAGAGG 58.225 37.037 0.00 0.00 0.00 3.69
1573 1630 7.093945 ACAAAAATAAGAGGTGCCGATGTTATT 60.094 33.333 0.00 0.00 0.00 1.40
1700 1780 6.353404 CCTAAAGAAGGCATAACCCAAAAA 57.647 37.500 0.00 0.00 38.97 1.94
1826 1906 2.127708 ACCTTCCACTCCTTCTGTTGT 58.872 47.619 0.00 0.00 0.00 3.32
1944 2024 4.443850 CAGTGAACTGATTACGCTATGC 57.556 45.455 4.36 0.00 46.59 3.14
1984 2064 6.966021 TGGTAAACTATTGCACTCTTGAAAC 58.034 36.000 0.00 0.00 0.00 2.78
2102 2196 3.196039 TGGTAGCCTACAATAAGCGTTCA 59.804 43.478 3.95 0.00 0.00 3.18
2114 2208 3.370633 CCCTCTCCTTTTTGGTAGCCTAC 60.371 52.174 0.00 0.00 37.07 3.18
2141 2235 0.110486 ACCAAAACTCCATGTCCGCT 59.890 50.000 0.00 0.00 0.00 5.52
2250 2344 3.883830 AACATTGCACACAGGTGAAAA 57.116 38.095 6.40 0.00 45.57 2.29
2351 2447 1.537202 CGAGGTCTGGGCAAAGAAAAG 59.463 52.381 0.00 0.00 0.00 2.27
2356 2456 1.738099 CGTCGAGGTCTGGGCAAAG 60.738 63.158 0.00 0.00 0.00 2.77
2493 2596 3.243873 CGAGCTCAAATGGTCCTGCTATA 60.244 47.826 15.40 0.00 0.00 1.31
2498 2601 0.745845 CCCGAGCTCAAATGGTCCTG 60.746 60.000 15.40 0.00 0.00 3.86
2682 2785 4.002982 AGCAATTCATAGAACTTGCACGA 58.997 39.130 19.18 0.00 44.90 4.35
2711 2814 6.289834 TCACCTACAAAACAGAATTACCGAA 58.710 36.000 0.00 0.00 0.00 4.30
2723 2826 5.001232 TGTATCCTGCTTCACCTACAAAAC 58.999 41.667 0.00 0.00 0.00 2.43
2929 3032 1.208052 AGACCTGATTCCCATGACACG 59.792 52.381 0.00 0.00 0.00 4.49
3031 3134 9.559958 AAGAATGCGAAGTTAAATGTAAAGATG 57.440 29.630 0.00 0.00 0.00 2.90
3136 3242 6.827727 AGTTAAGAAGCTGAGTTAAGAACCA 58.172 36.000 0.00 0.00 0.00 3.67
3170 3285 3.754965 AGTTTGCCTACAATGAAGAGCA 58.245 40.909 0.00 0.00 35.21 4.26
3293 3415 4.157656 TCAGTAAAGTGGGTATTTGCATGC 59.842 41.667 11.82 11.82 0.00 4.06
3295 3417 5.163519 GCATCAGTAAAGTGGGTATTTGCAT 60.164 40.000 0.00 0.00 0.00 3.96
3646 3769 0.601046 TCAAGCAACCTGACTGAGCG 60.601 55.000 0.00 0.00 0.00 5.03
3658 3781 5.221422 ACCAATCCGAATCTTTTTCAAGCAA 60.221 36.000 0.00 0.00 0.00 3.91
3682 3805 7.069826 ACCAACCTGATCAAAGAAATTTCTTCA 59.930 33.333 28.87 21.86 46.22 3.02
3749 3872 7.208064 ACAGCTATAAAAGGGAGGTCAAATA 57.792 36.000 0.00 0.00 0.00 1.40
3794 3917 4.158579 CCTTCACCCTTTCTTCCAAATAGC 59.841 45.833 0.00 0.00 0.00 2.97
3961 4084 1.868469 TAAACAAACGAGGACACGGG 58.132 50.000 0.00 0.00 37.61 5.28
3971 4094 9.607285 AGTCAATAAGCAGTAAATAAACAAACG 57.393 29.630 0.00 0.00 0.00 3.60
4157 4280 9.979578 AGTTATCAGTTGTTGAAATGCAAAATA 57.020 25.926 0.00 0.00 39.77 1.40
4170 4293 6.978338 TCTCAGTTACGAGTTATCAGTTGTT 58.022 36.000 0.00 0.00 34.46 2.83
4185 4308 8.523658 TGACATATGGTGCTATATCTCAGTTAC 58.476 37.037 7.80 0.00 0.00 2.50
4197 4320 4.281941 GGTCTCAGATGACATATGGTGCTA 59.718 45.833 10.07 0.00 38.61 3.49
4224 4348 2.094026 GCACAATTTCAAAGGCCTAGGG 60.094 50.000 5.16 0.00 0.00 3.53
4279 4403 4.189639 ACAATACTCGTCTGAAAGGGTC 57.810 45.455 0.00 0.00 0.00 4.46
4357 4484 0.694196 GGTACAGGGTACAGGCCAAA 59.306 55.000 5.01 0.00 0.00 3.28
4358 4485 1.202769 GGGTACAGGGTACAGGCCAA 61.203 60.000 5.01 0.00 0.00 4.52
4359 4486 1.614226 GGGTACAGGGTACAGGCCA 60.614 63.158 5.01 0.00 0.00 5.36
4360 4487 1.306739 AGGGTACAGGGTACAGGCC 60.307 63.158 0.00 0.00 0.00 5.19
4362 4489 2.385803 CTACAGGGTACAGGGTACAGG 58.614 57.143 8.60 0.68 0.00 4.00
4363 4490 2.385803 CCTACAGGGTACAGGGTACAG 58.614 57.143 8.60 1.32 0.00 2.74
4364 4491 1.620524 GCCTACAGGGTACAGGGTACA 60.621 57.143 8.60 0.00 37.43 2.90
4366 4493 0.031817 GGCCTACAGGGTACAGGGTA 60.032 60.000 0.00 0.00 37.43 3.69
4367 4494 1.306739 GGCCTACAGGGTACAGGGT 60.307 63.158 0.00 0.00 37.43 4.34
4368 4495 1.003051 AGGCCTACAGGGTACAGGG 59.997 63.158 1.29 0.00 37.43 4.45
4369 4496 0.617820 ACAGGCCTACAGGGTACAGG 60.618 60.000 3.98 0.00 37.43 4.00
4370 4497 1.755380 GTACAGGCCTACAGGGTACAG 59.245 57.143 20.11 2.20 33.42 2.74
4371 4498 1.620524 GGTACAGGCCTACAGGGTACA 60.621 57.143 24.12 0.00 34.26 2.90
4373 4500 0.031817 GGGTACAGGCCTACAGGGTA 60.032 60.000 3.98 0.00 37.43 3.69
4374 4501 1.306739 GGGTACAGGCCTACAGGGT 60.307 63.158 3.98 0.20 37.43 4.34
4375 4502 1.003051 AGGGTACAGGCCTACAGGG 59.997 63.158 3.98 0.00 35.18 4.45
4376 4503 0.617820 ACAGGGTACAGGCCTACAGG 60.618 60.000 3.98 0.00 38.53 4.00
4377 4504 1.755380 GTACAGGGTACAGGCCTACAG 59.245 57.143 3.98 0.00 0.00 2.74
4379 4506 1.117994 GGTACAGGGTACAGGCCTAC 58.882 60.000 3.98 0.00 0.00 3.18
4381 4508 1.306739 GGGTACAGGGTACAGGCCT 60.307 63.158 0.00 0.00 0.00 5.19
4382 4509 1.306739 AGGGTACAGGGTACAGGCC 60.307 63.158 0.00 0.00 0.00 5.19
4383 4510 0.908180 ACAGGGTACAGGGTACAGGC 60.908 60.000 8.60 0.00 0.00 4.85
4384 4511 2.385803 CTACAGGGTACAGGGTACAGG 58.614 57.143 8.60 0.68 0.00 4.00
4385 4512 2.385803 CCTACAGGGTACAGGGTACAG 58.614 57.143 8.60 1.32 0.00 2.74
4387 4514 1.117994 GCCTACAGGGTACAGGGTAC 58.882 60.000 0.00 0.00 37.43 3.34
4388 4515 0.031817 GGCCTACAGGGTACAGGGTA 60.032 60.000 0.00 0.00 37.43 3.69
4389 4516 1.306739 GGCCTACAGGGTACAGGGT 60.307 63.158 0.00 0.00 37.43 4.34
4390 4517 0.620700 AAGGCCTACAGGGTACAGGG 60.621 60.000 5.16 0.00 37.43 4.45
4391 4518 1.286248 AAAGGCCTACAGGGTACAGG 58.714 55.000 5.16 0.00 37.43 4.00
4392 4519 3.081804 CAAAAAGGCCTACAGGGTACAG 58.918 50.000 5.16 0.00 37.43 2.74
4393 4520 2.444010 ACAAAAAGGCCTACAGGGTACA 59.556 45.455 5.16 0.00 37.43 2.90
4394 4521 3.150458 ACAAAAAGGCCTACAGGGTAC 57.850 47.619 5.16 0.00 37.43 3.34
4395 4522 3.307904 GCTACAAAAAGGCCTACAGGGTA 60.308 47.826 5.16 4.86 37.43 3.69
4396 4523 2.554564 GCTACAAAAAGGCCTACAGGGT 60.555 50.000 5.16 3.77 37.43 4.34
4397 4524 2.092323 GCTACAAAAAGGCCTACAGGG 58.908 52.381 5.16 0.00 35.18 4.45
4425 4733 2.159085 CCCGCAAGTACCAAACCAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
4426 4734 1.409427 CCCGCAAGTACCAAACCAAAA 59.591 47.619 0.00 0.00 0.00 2.44
4427 4735 1.033574 CCCGCAAGTACCAAACCAAA 58.966 50.000 0.00 0.00 0.00 3.28
4428 4736 0.106619 ACCCGCAAGTACCAAACCAA 60.107 50.000 0.00 0.00 0.00 3.67
4429 4737 0.106619 AACCCGCAAGTACCAAACCA 60.107 50.000 0.00 0.00 0.00 3.67
4430 4738 0.594602 GAACCCGCAAGTACCAAACC 59.405 55.000 0.00 0.00 0.00 3.27
4435 4749 0.320697 AGAGTGAACCCGCAAGTACC 59.679 55.000 0.00 0.00 0.00 3.34
4467 4781 9.809096 TTTTCAAGCACACATAAAAATTAGTGA 57.191 25.926 0.00 0.00 35.97 3.41
4508 4822 3.758755 TCTTGCAGACTGTTGATGAGT 57.241 42.857 3.99 0.00 0.00 3.41
4514 4828 0.524862 GCCCATCTTGCAGACTGTTG 59.475 55.000 3.99 0.00 0.00 3.33
4551 4865 6.118170 CCATGGCAATATGTAAGAGGATAGG 58.882 44.000 0.00 0.00 0.00 2.57
4601 4915 1.492133 TAGGAGTTGGCAGCAGGCTT 61.492 55.000 3.63 0.00 44.01 4.35
4672 4986 2.185387 GTAGGCTCAGTAAAGTGGGGA 58.815 52.381 0.00 0.00 0.00 4.81
4779 5093 4.806640 TCCTTTGATTTGGAAATCCTGC 57.193 40.909 9.16 0.00 43.19 4.85
4848 5162 6.094193 GATGAAATCTCATGGAAAATCCCC 57.906 41.667 0.00 0.00 42.60 4.81
4903 5217 7.654568 ACTAATTCCATATGATTGTGTGCATG 58.345 34.615 3.65 0.00 0.00 4.06
4907 5221 8.785946 TGCATACTAATTCCATATGATTGTGTG 58.214 33.333 3.65 7.76 0.00 3.82
5080 5394 7.979444 TGAGTGATTAGGTTAAAAGTGAAGG 57.021 36.000 0.00 0.00 0.00 3.46
5173 5487 1.284657 CACTGCCGATTAGCTGTCTG 58.715 55.000 0.00 0.00 42.27 3.51
5223 5537 9.642343 TCATATGTACTGATGTAGACTAGGTTT 57.358 33.333 1.90 0.00 0.00 3.27
5243 5557 8.797350 TTTGGCCTCATCACTAATATCATATG 57.203 34.615 3.32 0.00 0.00 1.78
5274 5588 5.953183 TCCATGTTGTGACTTGAAATATGC 58.047 37.500 0.00 0.00 33.91 3.14
5331 5647 2.361119 CTCTCCCGGACATCGTTATTCA 59.639 50.000 0.73 0.00 37.11 2.57
5496 5812 1.490490 TCCTCAACTGCAGTCACCTTT 59.510 47.619 21.95 0.00 0.00 3.11
5506 5822 1.156736 TTAGCGCTTTCCTCAACTGC 58.843 50.000 18.68 0.00 0.00 4.40
5572 5888 4.467795 ACTGCATGGTGTGAGATTAGTAGT 59.532 41.667 0.00 0.00 0.00 2.73
5573 5889 4.807834 CACTGCATGGTGTGAGATTAGTAG 59.192 45.833 0.00 0.00 36.38 2.57
5574 5890 4.466015 TCACTGCATGGTGTGAGATTAGTA 59.534 41.667 2.60 0.00 38.15 1.82
5610 5926 5.543507 AAGATGTGTTCTGTTCACTCTCT 57.456 39.130 0.00 0.00 36.83 3.10
5638 5954 1.334869 GCCGGTTGCAAGATTATCCAG 59.665 52.381 1.90 0.00 40.77 3.86
5721 6037 3.133691 CTGTGCTTGCTTGACTGTTCTA 58.866 45.455 0.00 0.00 0.00 2.10
5759 6075 2.101415 TGCACCTCAGGACTAATCATCG 59.899 50.000 0.00 0.00 0.00 3.84
5761 6077 3.378512 TCTGCACCTCAGGACTAATCAT 58.621 45.455 0.00 0.00 43.06 2.45
5892 6208 5.769662 TGAATTTCTTGTACTGATGGCACTT 59.230 36.000 0.00 0.00 0.00 3.16
5974 6290 2.912295 TGGACCTTGAATCATGAGGTGA 59.088 45.455 11.07 0.00 43.59 4.02
6014 6330 8.085296 ACTGAAACACAAATTTGACAAACAGTA 58.915 29.630 24.64 2.22 33.96 2.74
6016 6332 7.350110 ACTGAAACACAAATTTGACAAACAG 57.650 32.000 24.64 23.63 0.00 3.16
6024 6340 6.534436 TGACCATCAACTGAAACACAAATTTG 59.466 34.615 16.67 16.67 0.00 2.32
6090 6408 4.855715 TGCCGGATCTCTCTACATAAAG 57.144 45.455 5.05 0.00 0.00 1.85
6097 6415 5.871396 AATAAGTTTGCCGGATCTCTCTA 57.129 39.130 5.05 0.00 0.00 2.43
6109 6427 4.739195 TGTCGGGCATTAAATAAGTTTGC 58.261 39.130 0.00 0.00 0.00 3.68
6121 6439 1.002134 CACCTCCTTGTCGGGCATT 60.002 57.895 0.00 0.00 0.00 3.56
6122 6440 2.671070 CACCTCCTTGTCGGGCAT 59.329 61.111 0.00 0.00 0.00 4.40
6130 6448 3.114616 CTGTCGCGCACCTCCTTG 61.115 66.667 8.75 0.00 0.00 3.61
6183 6501 3.131396 GTTATGGTAGAAGCGGTCATGG 58.869 50.000 0.00 0.00 0.00 3.66
6297 6615 2.291217 GGTCTCTTGGGCTCTTTTCCAT 60.291 50.000 0.00 0.00 32.48 3.41
6301 6619 3.117512 TCTTTGGTCTCTTGGGCTCTTTT 60.118 43.478 0.00 0.00 0.00 2.27
6362 6680 2.287668 CGATGGGTTCTCGTCATCCTAC 60.288 54.545 0.00 0.00 35.22 3.18
6382 6700 1.410004 TAACCATGAGAGCCCCTACG 58.590 55.000 0.00 0.00 0.00 3.51
6422 6740 6.197468 GTGTAGCTCGTCTATTTTCTGATGTC 59.803 42.308 0.00 0.00 0.00 3.06
6472 6790 0.962356 CAAGCTGCCTCCGGAATTGT 60.962 55.000 5.23 0.00 0.00 2.71
6616 6934 5.495640 CTTCTCTCTCATGCCCTAAAAACT 58.504 41.667 0.00 0.00 0.00 2.66
6694 7014 5.760743 AGTTGTGGAGTAAAAGAGAAGAAGC 59.239 40.000 0.00 0.00 0.00 3.86
6954 7994 2.679336 GGATGGCAATGAAAACAATGGC 59.321 45.455 0.00 0.00 38.68 4.40
6970 8010 0.688418 ATGGGTGGTGCAATGGATGG 60.688 55.000 0.00 0.00 0.00 3.51
6988 8040 3.349304 TGGTGCCATGGGAGCCAT 61.349 61.111 29.60 0.00 46.37 4.40
7043 8097 1.136828 GGTGGTATGGGAGGCATACA 58.863 55.000 0.00 0.00 37.28 2.29
7045 8099 3.181329 CATAGGTGGTATGGGAGGCATA 58.819 50.000 0.00 0.00 35.69 3.14
7069 8123 3.017581 ATGGGAGGACTGGGTGGC 61.018 66.667 0.00 0.00 0.00 5.01
7177 8231 5.594317 AGGCAAAAACATACTTTGAGAGTGT 59.406 36.000 0.00 0.00 39.48 3.55
7193 8247 4.037923 GTGGTCTTGATGAGAAGGCAAAAA 59.962 41.667 0.00 0.00 35.79 1.94
7265 8319 1.342374 GGAAGGTGGCCATGGAAGAAT 60.342 52.381 18.40 0.00 0.00 2.40
7297 8351 1.183549 GTAACCGAGGAGAAGGCAGA 58.816 55.000 0.00 0.00 0.00 4.26



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.