Multiple sequence alignment - TraesCS4A01G276900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G276900 | chr4A | 100.000 | 7371 | 0 | 0 | 1 | 7371 | 585034320 | 585026950 | 0.000000e+00 | 13612.0 |
1 | TraesCS4A01G276900 | chr4A | 95.575 | 113 | 5 | 0 | 1 | 113 | 619286661 | 619286549 | 1.630000e-41 | 182.0 |
2 | TraesCS4A01G276900 | chr4B | 92.576 | 7179 | 337 | 84 | 321 | 7371 | 26485928 | 26493038 | 0.000000e+00 | 10124.0 |
3 | TraesCS4A01G276900 | chr4B | 82.667 | 225 | 31 | 7 | 1357 | 1578 | 57270351 | 57270570 | 7.550000e-45 | 193.0 |
4 | TraesCS4A01G276900 | chr4B | 94.068 | 118 | 4 | 2 | 198 | 312 | 40215224 | 40215341 | 7.600000e-40 | 176.0 |
5 | TraesCS4A01G276900 | chr4B | 90.278 | 72 | 3 | 1 | 111 | 182 | 26485847 | 26485914 | 2.830000e-14 | 91.6 |
6 | TraesCS4A01G276900 | chr4D | 92.821 | 4109 | 151 | 50 | 313 | 4330 | 15551450 | 15555505 | 0.000000e+00 | 5821.0 |
7 | TraesCS4A01G276900 | chr4D | 93.900 | 2328 | 101 | 18 | 4399 | 6723 | 15555755 | 15558044 | 0.000000e+00 | 3474.0 |
8 | TraesCS4A01G276900 | chr4D | 87.647 | 680 | 33 | 17 | 6721 | 7371 | 15558751 | 15559408 | 0.000000e+00 | 743.0 |
9 | TraesCS4A01G276900 | chr4D | 83.258 | 221 | 32 | 4 | 1360 | 1578 | 43054305 | 43054522 | 1.620000e-46 | 198.0 |
10 | TraesCS4A01G276900 | chr4D | 96.970 | 99 | 3 | 0 | 111 | 209 | 15551337 | 15551435 | 4.570000e-37 | 167.0 |
11 | TraesCS4A01G276900 | chr6B | 85.854 | 205 | 26 | 3 | 1363 | 1566 | 670039497 | 670039295 | 1.610000e-51 | 215.0 |
12 | TraesCS4A01G276900 | chr6B | 89.051 | 137 | 10 | 4 | 180 | 312 | 713563468 | 713563333 | 1.650000e-36 | 165.0 |
13 | TraesCS4A01G276900 | chr6B | 82.301 | 113 | 13 | 5 | 2190 | 2302 | 684764345 | 684764450 | 2.830000e-14 | 91.6 |
14 | TraesCS4A01G276900 | chr3D | 82.791 | 215 | 32 | 5 | 1360 | 1573 | 493038555 | 493038345 | 3.510000e-43 | 187.0 |
15 | TraesCS4A01G276900 | chr3D | 77.165 | 127 | 25 | 2 | 4778 | 4903 | 460446775 | 460446898 | 3.690000e-08 | 71.3 |
16 | TraesCS4A01G276900 | chr6D | 95.652 | 115 | 5 | 0 | 1 | 115 | 389980448 | 389980334 | 1.260000e-42 | 185.0 |
17 | TraesCS4A01G276900 | chr6D | 86.076 | 79 | 10 | 1 | 2233 | 2310 | 451027511 | 451027589 | 4.740000e-12 | 84.2 |
18 | TraesCS4A01G276900 | chr5B | 82.407 | 216 | 34 | 4 | 1359 | 1573 | 366053612 | 366053400 | 1.260000e-42 | 185.0 |
19 | TraesCS4A01G276900 | chr2A | 95.652 | 115 | 5 | 0 | 1 | 115 | 745589277 | 745589391 | 1.260000e-42 | 185.0 |
20 | TraesCS4A01G276900 | chr2A | 92.623 | 122 | 5 | 3 | 194 | 312 | 378844108 | 378844228 | 9.830000e-39 | 172.0 |
21 | TraesCS4A01G276900 | chr5A | 82.110 | 218 | 35 | 3 | 1357 | 1573 | 567612086 | 567611872 | 4.540000e-42 | 183.0 |
22 | TraesCS4A01G276900 | chr5A | 95.575 | 113 | 5 | 0 | 1 | 113 | 29689191 | 29689079 | 1.630000e-41 | 182.0 |
23 | TraesCS4A01G276900 | chr5A | 94.737 | 114 | 6 | 0 | 1 | 114 | 681263941 | 681263828 | 2.110000e-40 | 178.0 |
24 | TraesCS4A01G276900 | chr5A | 92.742 | 124 | 5 | 3 | 193 | 312 | 218990173 | 218990050 | 7.600000e-40 | 176.0 |
25 | TraesCS4A01G276900 | chr7A | 92.913 | 127 | 6 | 3 | 1 | 124 | 630718668 | 630718794 | 1.630000e-41 | 182.0 |
26 | TraesCS4A01G276900 | chr7A | 94.828 | 116 | 2 | 3 | 201 | 312 | 41866901 | 41866786 | 2.110000e-40 | 178.0 |
27 | TraesCS4A01G276900 | chr7A | 92.683 | 123 | 8 | 1 | 1 | 123 | 688618231 | 688618352 | 7.600000e-40 | 176.0 |
28 | TraesCS4A01G276900 | chr5D | 82.192 | 219 | 32 | 6 | 1358 | 1573 | 538171533 | 538171747 | 1.630000e-41 | 182.0 |
29 | TraesCS4A01G276900 | chr1A | 94.167 | 120 | 4 | 2 | 199 | 315 | 520861063 | 520860944 | 5.880000e-41 | 180.0 |
30 | TraesCS4A01G276900 | chr1A | 94.737 | 114 | 6 | 0 | 1 | 114 | 441955950 | 441956063 | 2.110000e-40 | 178.0 |
31 | TraesCS4A01G276900 | chr1A | 94.690 | 113 | 6 | 0 | 1 | 113 | 354686362 | 354686250 | 7.600000e-40 | 176.0 |
32 | TraesCS4A01G276900 | chr3B | 92.742 | 124 | 3 | 4 | 192 | 312 | 8039410 | 8039290 | 2.730000e-39 | 174.0 |
33 | TraesCS4A01G276900 | chr3B | 91.473 | 129 | 8 | 2 | 187 | 312 | 584578123 | 584577995 | 2.730000e-39 | 174.0 |
34 | TraesCS4A01G276900 | chr3B | 92.683 | 123 | 4 | 4 | 197 | 315 | 131077396 | 131077275 | 9.830000e-39 | 172.0 |
35 | TraesCS4A01G276900 | chrUn | 81.061 | 132 | 19 | 4 | 2225 | 2351 | 100518666 | 100518796 | 4.710000e-17 | 100.0 |
36 | TraesCS4A01G276900 | chr6A | 76.303 | 211 | 37 | 10 | 2226 | 2429 | 35943595 | 35943391 | 4.710000e-17 | 100.0 |
37 | TraesCS4A01G276900 | chr6A | 80.165 | 121 | 9 | 6 | 6696 | 6815 | 205100393 | 205100287 | 7.930000e-10 | 76.8 |
38 | TraesCS4A01G276900 | chr7B | 82.353 | 102 | 18 | 0 | 6578 | 6679 | 30794975 | 30794874 | 1.020000e-13 | 89.8 |
39 | TraesCS4A01G276900 | chr7B | 81.731 | 104 | 19 | 0 | 6576 | 6679 | 31464005 | 31463902 | 3.660000e-13 | 87.9 |
40 | TraesCS4A01G276900 | chr7D | 81.373 | 102 | 19 | 0 | 6578 | 6679 | 82462481 | 82462380 | 4.740000e-12 | 84.2 |
41 | TraesCS4A01G276900 | chr7D | 95.455 | 44 | 2 | 0 | 6824 | 6867 | 568415027 | 568414984 | 3.690000e-08 | 71.3 |
42 | TraesCS4A01G276900 | chr2B | 78.295 | 129 | 21 | 7 | 4766 | 4891 | 26488119 | 26488243 | 7.930000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G276900 | chr4A | 585026950 | 585034320 | 7370 | True | 13612.00 | 13612 | 100.0000 | 1 | 7371 | 1 | chr4A.!!$R1 | 7370 |
1 | TraesCS4A01G276900 | chr4B | 26485847 | 26493038 | 7191 | False | 5107.80 | 10124 | 91.4270 | 111 | 7371 | 2 | chr4B.!!$F3 | 7260 |
2 | TraesCS4A01G276900 | chr4D | 15551337 | 15559408 | 8071 | False | 2551.25 | 5821 | 92.8345 | 111 | 7371 | 4 | chr4D.!!$F2 | 7260 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
989 | 1035 | 0.034670 | AGGTACTCGTAGGGCTTCGT | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 | F |
990 | 1036 | 0.100146 | GGTACTCGTAGGGCTTCGTG | 59.900 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 | F |
991 | 1037 | 0.100146 | GTACTCGTAGGGCTTCGTGG | 59.900 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 | F |
1035 | 1081 | 0.460987 | AAATCCTGGAGCTTCGCGAG | 60.461 | 55.000 | 9.59 | 4.97 | 0.00 | 5.03 | F |
1826 | 1906 | 1.140852 | CCTTCAGATATTCGTGGGCCA | 59.859 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 | F |
3551 | 3674 | 0.400213 | TTGAAGTCAACCTCGGCCAT | 59.600 | 50.000 | 2.24 | 0.00 | 0.00 | 4.40 | F |
3971 | 4094 | 0.105039 | CCTTGATAGCCCGTGTCCTC | 59.895 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 | F |
4385 | 4512 | 0.031817 | TACCCTGTACCCTGTAGGCC | 60.032 | 60.000 | 0.00 | 0.00 | 40.58 | 5.19 | F |
4392 | 4519 | 0.031817 | TACCCTGTAGGCCTGTACCC | 60.032 | 60.000 | 17.99 | 0.00 | 40.58 | 3.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2141 | 2235 | 0.110486 | ACCAAAACTCCATGTCCGCT | 59.890 | 50.000 | 0.00 | 0.0 | 0.00 | 5.52 | R |
2498 | 2601 | 0.745845 | CCCGAGCTCAAATGGTCCTG | 60.746 | 60.000 | 15.40 | 0.0 | 0.00 | 3.86 | R |
2929 | 3032 | 1.208052 | AGACCTGATTCCCATGACACG | 59.792 | 52.381 | 0.00 | 0.0 | 0.00 | 4.49 | R |
3031 | 3134 | 9.559958 | AAGAATGCGAAGTTAAATGTAAAGATG | 57.440 | 29.630 | 0.00 | 0.0 | 0.00 | 2.90 | R |
3646 | 3769 | 0.601046 | TCAAGCAACCTGACTGAGCG | 60.601 | 55.000 | 0.00 | 0.0 | 0.00 | 5.03 | R |
4366 | 4493 | 0.031817 | GGCCTACAGGGTACAGGGTA | 60.032 | 60.000 | 0.00 | 0.0 | 37.43 | 3.69 | R |
5506 | 5822 | 1.156736 | TTAGCGCTTTCCTCAACTGC | 58.843 | 50.000 | 18.68 | 0.0 | 0.00 | 4.40 | R |
6121 | 6439 | 1.002134 | CACCTCCTTGTCGGGCATT | 60.002 | 57.895 | 0.00 | 0.0 | 0.00 | 3.56 | R |
6382 | 6700 | 1.410004 | TAACCATGAGAGCCCCTACG | 58.590 | 55.000 | 0.00 | 0.0 | 0.00 | 3.51 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
61 | 62 | 9.783256 | ATATAAATTCGGTCAAACTTAGCAAAC | 57.217 | 29.630 | 0.00 | 0.00 | 0.00 | 2.93 |
62 | 63 | 5.767816 | AATTCGGTCAAACTTAGCAAACT | 57.232 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
63 | 64 | 5.767816 | ATTCGGTCAAACTTAGCAAACTT | 57.232 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
64 | 65 | 5.570234 | TTCGGTCAAACTTAGCAAACTTT | 57.430 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
65 | 66 | 4.915704 | TCGGTCAAACTTAGCAAACTTTG | 58.084 | 39.130 | 0.00 | 0.00 | 0.00 | 2.77 |
66 | 67 | 4.636648 | TCGGTCAAACTTAGCAAACTTTGA | 59.363 | 37.500 | 5.65 | 0.00 | 30.03 | 2.69 |
67 | 68 | 4.733405 | CGGTCAAACTTAGCAAACTTTGAC | 59.267 | 41.667 | 13.52 | 13.52 | 42.08 | 3.18 |
68 | 69 | 5.448632 | CGGTCAAACTTAGCAAACTTTGACT | 60.449 | 40.000 | 18.27 | 4.99 | 42.25 | 3.41 |
69 | 70 | 6.330278 | GGTCAAACTTAGCAAACTTTGACTT | 58.670 | 36.000 | 18.27 | 0.00 | 42.25 | 3.01 |
70 | 71 | 6.472486 | GGTCAAACTTAGCAAACTTTGACTTC | 59.528 | 38.462 | 18.27 | 5.97 | 42.25 | 3.01 |
71 | 72 | 7.027161 | GTCAAACTTAGCAAACTTTGACTTCA | 58.973 | 34.615 | 14.22 | 0.00 | 40.96 | 3.02 |
72 | 73 | 7.218963 | GTCAAACTTAGCAAACTTTGACTTCAG | 59.781 | 37.037 | 14.22 | 5.09 | 40.96 | 3.02 |
73 | 74 | 7.120579 | TCAAACTTAGCAAACTTTGACTTCAGA | 59.879 | 33.333 | 5.65 | 0.00 | 28.54 | 3.27 |
74 | 75 | 6.364945 | ACTTAGCAAACTTTGACTTCAGAC | 57.635 | 37.500 | 5.65 | 0.00 | 0.00 | 3.51 |
75 | 76 | 5.880332 | ACTTAGCAAACTTTGACTTCAGACA | 59.120 | 36.000 | 5.65 | 0.00 | 0.00 | 3.41 |
76 | 77 | 6.374333 | ACTTAGCAAACTTTGACTTCAGACAA | 59.626 | 34.615 | 5.65 | 0.00 | 0.00 | 3.18 |
77 | 78 | 5.643379 | AGCAAACTTTGACTTCAGACAAA | 57.357 | 34.783 | 5.65 | 4.72 | 37.36 | 2.83 |
85 | 86 | 6.942532 | TTTGACTTCAGACAAAGCTAATGT | 57.057 | 33.333 | 4.85 | 4.85 | 35.47 | 2.71 |
86 | 87 | 5.929697 | TGACTTCAGACAAAGCTAATGTG | 57.070 | 39.130 | 9.61 | 0.00 | 0.00 | 3.21 |
87 | 88 | 4.214119 | TGACTTCAGACAAAGCTAATGTGC | 59.786 | 41.667 | 9.61 | 2.86 | 0.00 | 4.57 |
88 | 89 | 3.187227 | ACTTCAGACAAAGCTAATGTGCG | 59.813 | 43.478 | 9.61 | 1.67 | 38.13 | 5.34 |
89 | 90 | 2.076100 | TCAGACAAAGCTAATGTGCGG | 58.924 | 47.619 | 9.61 | 3.78 | 38.13 | 5.69 |
90 | 91 | 2.076100 | CAGACAAAGCTAATGTGCGGA | 58.924 | 47.619 | 9.61 | 0.00 | 38.13 | 5.54 |
91 | 92 | 2.094894 | CAGACAAAGCTAATGTGCGGAG | 59.905 | 50.000 | 9.61 | 0.00 | 38.13 | 4.63 |
92 | 93 | 2.076863 | GACAAAGCTAATGTGCGGAGT | 58.923 | 47.619 | 9.61 | 0.00 | 38.13 | 3.85 |
93 | 94 | 3.056107 | AGACAAAGCTAATGTGCGGAGTA | 60.056 | 43.478 | 9.61 | 0.00 | 38.13 | 2.59 |
94 | 95 | 3.670625 | ACAAAGCTAATGTGCGGAGTAA | 58.329 | 40.909 | 4.40 | 0.00 | 38.13 | 2.24 |
95 | 96 | 4.069304 | ACAAAGCTAATGTGCGGAGTAAA | 58.931 | 39.130 | 4.40 | 0.00 | 38.13 | 2.01 |
96 | 97 | 4.517453 | ACAAAGCTAATGTGCGGAGTAAAA | 59.483 | 37.500 | 4.40 | 0.00 | 38.13 | 1.52 |
97 | 98 | 5.009210 | ACAAAGCTAATGTGCGGAGTAAAAA | 59.991 | 36.000 | 4.40 | 0.00 | 38.13 | 1.94 |
119 | 120 | 3.904717 | AGACCCGAGAGAGTATTCACAT | 58.095 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
230 | 231 | 4.686972 | TGAGCATCAGTATAGACACAAGC | 58.313 | 43.478 | 0.00 | 0.00 | 42.56 | 4.01 |
231 | 232 | 3.711086 | AGCATCAGTATAGACACAAGCG | 58.289 | 45.455 | 0.00 | 0.00 | 0.00 | 4.68 |
232 | 233 | 2.219674 | GCATCAGTATAGACACAAGCGC | 59.780 | 50.000 | 0.00 | 0.00 | 0.00 | 5.92 |
233 | 234 | 3.711086 | CATCAGTATAGACACAAGCGCT | 58.289 | 45.455 | 2.64 | 2.64 | 0.00 | 5.92 |
234 | 235 | 3.422417 | TCAGTATAGACACAAGCGCTC | 57.578 | 47.619 | 12.06 | 0.00 | 0.00 | 5.03 |
235 | 236 | 2.752903 | TCAGTATAGACACAAGCGCTCA | 59.247 | 45.455 | 12.06 | 0.00 | 0.00 | 4.26 |
236 | 237 | 3.381590 | TCAGTATAGACACAAGCGCTCAT | 59.618 | 43.478 | 12.06 | 0.00 | 0.00 | 2.90 |
237 | 238 | 4.578928 | TCAGTATAGACACAAGCGCTCATA | 59.421 | 41.667 | 12.06 | 0.00 | 0.00 | 2.15 |
238 | 239 | 5.241728 | TCAGTATAGACACAAGCGCTCATAT | 59.758 | 40.000 | 12.06 | 5.85 | 0.00 | 1.78 |
239 | 240 | 6.430000 | TCAGTATAGACACAAGCGCTCATATA | 59.570 | 38.462 | 12.06 | 4.88 | 0.00 | 0.86 |
240 | 241 | 6.524933 | CAGTATAGACACAAGCGCTCATATAC | 59.475 | 42.308 | 12.06 | 15.71 | 0.00 | 1.47 |
241 | 242 | 3.801114 | AGACACAAGCGCTCATATACA | 57.199 | 42.857 | 12.06 | 0.00 | 0.00 | 2.29 |
242 | 243 | 3.448686 | AGACACAAGCGCTCATATACAC | 58.551 | 45.455 | 12.06 | 0.00 | 0.00 | 2.90 |
243 | 244 | 2.193447 | ACACAAGCGCTCATATACACG | 58.807 | 47.619 | 12.06 | 0.00 | 0.00 | 4.49 |
247 | 248 | 2.756964 | CGCTCATATACACGCGCG | 59.243 | 61.111 | 30.96 | 30.96 | 39.11 | 6.86 |
248 | 249 | 2.009226 | CGCTCATATACACGCGCGT | 61.009 | 57.895 | 32.73 | 32.73 | 39.11 | 6.01 |
249 | 250 | 0.723459 | CGCTCATATACACGCGCGTA | 60.723 | 55.000 | 37.24 | 22.76 | 39.11 | 4.42 |
250 | 251 | 0.701303 | GCTCATATACACGCGCGTAC | 59.299 | 55.000 | 37.24 | 12.21 | 0.00 | 3.67 |
251 | 252 | 1.922880 | GCTCATATACACGCGCGTACA | 60.923 | 52.381 | 37.24 | 25.85 | 0.00 | 2.90 |
252 | 253 | 1.707117 | CTCATATACACGCGCGTACAC | 59.293 | 52.381 | 37.24 | 0.00 | 0.00 | 2.90 |
253 | 254 | 1.331447 | TCATATACACGCGCGTACACT | 59.669 | 47.619 | 37.24 | 21.72 | 0.00 | 3.55 |
254 | 255 | 1.707117 | CATATACACGCGCGTACACTC | 59.293 | 52.381 | 37.24 | 0.00 | 0.00 | 3.51 |
255 | 256 | 0.726256 | TATACACGCGCGTACACTCA | 59.274 | 50.000 | 37.24 | 16.71 | 0.00 | 3.41 |
256 | 257 | 0.795735 | ATACACGCGCGTACACTCAC | 60.796 | 55.000 | 37.24 | 0.00 | 0.00 | 3.51 |
257 | 258 | 2.784957 | TACACGCGCGTACACTCACC | 62.785 | 60.000 | 37.24 | 0.00 | 0.00 | 4.02 |
258 | 259 | 4.712425 | ACGCGCGTACACTCACCC | 62.712 | 66.667 | 37.08 | 0.00 | 0.00 | 4.61 |
260 | 261 | 4.065281 | GCGCGTACACTCACCCCT | 62.065 | 66.667 | 8.43 | 0.00 | 0.00 | 4.79 |
261 | 262 | 2.703798 | GCGCGTACACTCACCCCTA | 61.704 | 63.158 | 8.43 | 0.00 | 0.00 | 3.53 |
262 | 263 | 2.012902 | GCGCGTACACTCACCCCTAT | 62.013 | 60.000 | 8.43 | 0.00 | 0.00 | 2.57 |
263 | 264 | 0.248907 | CGCGTACACTCACCCCTATG | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 2.23 |
264 | 265 | 1.108776 | GCGTACACTCACCCCTATGA | 58.891 | 55.000 | 0.00 | 0.00 | 0.00 | 2.15 |
265 | 266 | 1.479323 | GCGTACACTCACCCCTATGAA | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
266 | 267 | 2.737679 | GCGTACACTCACCCCTATGAAC | 60.738 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
267 | 268 | 2.494471 | CGTACACTCACCCCTATGAACA | 59.506 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
268 | 269 | 3.675228 | CGTACACTCACCCCTATGAACAC | 60.675 | 52.174 | 0.00 | 0.00 | 0.00 | 3.32 |
269 | 270 | 2.334977 | ACACTCACCCCTATGAACACA | 58.665 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
270 | 271 | 2.038557 | ACACTCACCCCTATGAACACAC | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
271 | 272 | 2.038426 | CACTCACCCCTATGAACACACA | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
272 | 273 | 2.038557 | ACTCACCCCTATGAACACACAC | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
273 | 274 | 1.001520 | TCACCCCTATGAACACACACG | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
274 | 275 | 0.321298 | ACCCCTATGAACACACACGC | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
275 | 276 | 0.321210 | CCCCTATGAACACACACGCA | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 5.24 |
276 | 277 | 0.796312 | CCCTATGAACACACACGCAC | 59.204 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
277 | 278 | 1.507562 | CCTATGAACACACACGCACA | 58.492 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
278 | 279 | 1.194547 | CCTATGAACACACACGCACAC | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
279 | 280 | 1.194547 | CTATGAACACACACGCACACC | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
280 | 281 | 1.444119 | ATGAACACACACGCACACCC | 61.444 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
281 | 282 | 1.817941 | GAACACACACGCACACCCT | 60.818 | 57.895 | 0.00 | 0.00 | 0.00 | 4.34 |
282 | 283 | 0.531090 | GAACACACACGCACACCCTA | 60.531 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
283 | 284 | 0.812412 | AACACACACGCACACCCTAC | 60.812 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
284 | 285 | 1.959226 | CACACACGCACACCCTACC | 60.959 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
285 | 286 | 2.358247 | CACACGCACACCCTACCC | 60.358 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
286 | 287 | 2.525877 | ACACGCACACCCTACCCT | 60.526 | 61.111 | 0.00 | 0.00 | 0.00 | 4.34 |
287 | 288 | 1.228956 | ACACGCACACCCTACCCTA | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
288 | 289 | 0.616679 | ACACGCACACCCTACCCTAT | 60.617 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
289 | 290 | 0.179084 | CACGCACACCCTACCCTATG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 2.23 |
290 | 291 | 0.324923 | ACGCACACCCTACCCTATGA | 60.325 | 55.000 | 0.00 | 0.00 | 0.00 | 2.15 |
291 | 292 | 0.389391 | CGCACACCCTACCCTATGAG | 59.611 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
292 | 293 | 0.106894 | GCACACCCTACCCTATGAGC | 59.893 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
293 | 294 | 1.496060 | CACACCCTACCCTATGAGCA | 58.504 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
294 | 295 | 1.139058 | CACACCCTACCCTATGAGCAC | 59.861 | 57.143 | 0.00 | 0.00 | 0.00 | 4.40 |
295 | 296 | 0.759346 | CACCCTACCCTATGAGCACC | 59.241 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
296 | 297 | 0.642710 | ACCCTACCCTATGAGCACCT | 59.357 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
297 | 298 | 1.343069 | CCCTACCCTATGAGCACCTC | 58.657 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
298 | 299 | 1.343069 | CCTACCCTATGAGCACCTCC | 58.657 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
299 | 300 | 0.962489 | CTACCCTATGAGCACCTCCG | 59.038 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
300 | 301 | 0.554305 | TACCCTATGAGCACCTCCGA | 59.446 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
301 | 302 | 0.325296 | ACCCTATGAGCACCTCCGAA | 60.325 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
302 | 303 | 0.830648 | CCCTATGAGCACCTCCGAAA | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
303 | 304 | 1.202580 | CCCTATGAGCACCTCCGAAAG | 60.203 | 57.143 | 0.00 | 0.00 | 0.00 | 2.62 |
304 | 305 | 1.757118 | CCTATGAGCACCTCCGAAAGA | 59.243 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
305 | 306 | 2.482142 | CCTATGAGCACCTCCGAAAGAC | 60.482 | 54.545 | 0.00 | 0.00 | 0.00 | 3.01 |
306 | 307 | 1.270907 | ATGAGCACCTCCGAAAGACT | 58.729 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
307 | 308 | 0.318441 | TGAGCACCTCCGAAAGACTG | 59.682 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
308 | 309 | 0.603569 | GAGCACCTCCGAAAGACTGA | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
309 | 310 | 0.605589 | AGCACCTCCGAAAGACTGAG | 59.394 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
310 | 311 | 1.016653 | GCACCTCCGAAAGACTGAGC | 61.017 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
311 | 312 | 0.390472 | CACCTCCGAAAGACTGAGCC | 60.390 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
404 | 416 | 1.432657 | GTAACTCCTCGGTCGGCTC | 59.567 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
518 | 537 | 1.649815 | CCCTCTTCCTCGTCGATCG | 59.350 | 63.158 | 9.36 | 9.36 | 41.41 | 3.69 |
595 | 618 | 2.588314 | CCAGCGAGGCTCAGATGC | 60.588 | 66.667 | 15.95 | 9.64 | 36.40 | 3.91 |
615 | 639 | 3.627577 | TGCTTTCCTAATTTCGATCCAGC | 59.372 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
616 | 640 | 3.303395 | GCTTTCCTAATTTCGATCCAGCG | 60.303 | 47.826 | 0.00 | 0.00 | 0.00 | 5.18 |
639 | 663 | 3.033659 | TCTGGTATCTCCTCTGTTCCC | 57.966 | 52.381 | 0.00 | 0.00 | 37.07 | 3.97 |
640 | 664 | 2.314852 | TCTGGTATCTCCTCTGTTCCCA | 59.685 | 50.000 | 0.00 | 0.00 | 37.07 | 4.37 |
673 | 697 | 2.026542 | TGCTCTGTTCTGCATCTGGAAT | 60.027 | 45.455 | 0.00 | 0.00 | 33.94 | 3.01 |
674 | 698 | 3.015327 | GCTCTGTTCTGCATCTGGAATT | 58.985 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
678 | 702 | 4.008330 | CTGTTCTGCATCTGGAATTCTGT | 58.992 | 43.478 | 5.23 | 0.00 | 0.00 | 3.41 |
679 | 703 | 4.005650 | TGTTCTGCATCTGGAATTCTGTC | 58.994 | 43.478 | 5.23 | 0.00 | 0.00 | 3.51 |
735 | 770 | 0.321021 | TTGGCGCTGGCAAATTTCAT | 59.679 | 45.000 | 7.64 | 0.00 | 44.79 | 2.57 |
786 | 825 | 1.003233 | GCCTTCGCTTTCCACCTCT | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 3.69 |
789 | 828 | 0.674895 | CTTCGCTTTCCACCTCTGGG | 60.675 | 60.000 | 0.00 | 0.00 | 38.25 | 4.45 |
832 | 871 | 5.187186 | TCTTTCCTTTCTTATACCTGACGCT | 59.813 | 40.000 | 0.00 | 0.00 | 0.00 | 5.07 |
839 | 878 | 7.711339 | CCTTTCTTATACCTGACGCTTTTAGAT | 59.289 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
840 | 879 | 9.099454 | CTTTCTTATACCTGACGCTTTTAGATT | 57.901 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
841 | 880 | 9.444600 | TTTCTTATACCTGACGCTTTTAGATTT | 57.555 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
842 | 881 | 8.420374 | TCTTATACCTGACGCTTTTAGATTTG | 57.580 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
843 | 882 | 7.494625 | TCTTATACCTGACGCTTTTAGATTTGG | 59.505 | 37.037 | 0.00 | 0.00 | 0.00 | 3.28 |
844 | 883 | 4.015872 | ACCTGACGCTTTTAGATTTGGA | 57.984 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
845 | 884 | 4.394729 | ACCTGACGCTTTTAGATTTGGAA | 58.605 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
846 | 885 | 4.455877 | ACCTGACGCTTTTAGATTTGGAAG | 59.544 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
854 | 893 | 5.866092 | GCTTTTAGATTTGGAAGCCTTTCTG | 59.134 | 40.000 | 0.00 | 0.00 | 38.78 | 3.02 |
855 | 894 | 5.982890 | TTTAGATTTGGAAGCCTTTCTGG | 57.017 | 39.130 | 0.00 | 0.00 | 39.35 | 3.86 |
869 | 908 | 1.910580 | TTCTGGCCGTGGGGATCTTC | 61.911 | 60.000 | 0.00 | 0.00 | 34.06 | 2.87 |
873 | 912 | 4.547367 | CCGTGGGGATCTTCGGCC | 62.547 | 72.222 | 0.00 | 0.00 | 36.68 | 6.13 |
882 | 925 | 2.227089 | GATCTTCGGCCTCGTGTGGT | 62.227 | 60.000 | 0.00 | 0.00 | 37.69 | 4.16 |
886 | 929 | 2.999739 | TTCGGCCTCGTGTGGTTTCC | 63.000 | 60.000 | 0.00 | 0.00 | 37.69 | 3.13 |
921 | 964 | 3.119424 | TCGGTTTGGTTTTGGACAAGTTC | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
926 | 969 | 1.404035 | GGTTTTGGACAAGTTCTGCGT | 59.596 | 47.619 | 0.00 | 0.00 | 0.00 | 5.24 |
935 | 978 | 3.920446 | ACAAGTTCTGCGTTTTTGGTTT | 58.080 | 36.364 | 0.00 | 0.00 | 0.00 | 3.27 |
939 | 982 | 4.173256 | AGTTCTGCGTTTTTGGTTTTCAG | 58.827 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
941 | 984 | 4.442375 | TCTGCGTTTTTGGTTTTCAGAA | 57.558 | 36.364 | 0.00 | 0.00 | 0.00 | 3.02 |
946 | 989 | 4.862574 | GCGTTTTTGGTTTTCAGAACTCTT | 59.137 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
955 | 998 | 8.383318 | TGGTTTTCAGAACTCTTATCTTTCTG | 57.617 | 34.615 | 4.51 | 4.51 | 45.12 | 3.02 |
974 | 1020 | 1.132785 | TGGTGTTGGTCCAGGTAGGTA | 60.133 | 52.381 | 0.00 | 0.00 | 39.02 | 3.08 |
975 | 1021 | 1.277273 | GGTGTTGGTCCAGGTAGGTAC | 59.723 | 57.143 | 0.00 | 0.00 | 39.02 | 3.34 |
976 | 1022 | 2.254508 | GTGTTGGTCCAGGTAGGTACT | 58.745 | 52.381 | 0.00 | 0.00 | 46.37 | 2.73 |
977 | 1023 | 2.233186 | GTGTTGGTCCAGGTAGGTACTC | 59.767 | 54.545 | 0.00 | 0.00 | 41.75 | 2.59 |
978 | 1024 | 1.475682 | GTTGGTCCAGGTAGGTACTCG | 59.524 | 57.143 | 0.00 | 0.00 | 41.75 | 4.18 |
979 | 1025 | 0.700564 | TGGTCCAGGTAGGTACTCGT | 59.299 | 55.000 | 0.00 | 0.00 | 41.75 | 4.18 |
980 | 1026 | 1.915489 | TGGTCCAGGTAGGTACTCGTA | 59.085 | 52.381 | 0.00 | 0.00 | 41.75 | 3.43 |
981 | 1027 | 2.092753 | TGGTCCAGGTAGGTACTCGTAG | 60.093 | 54.545 | 0.00 | 0.00 | 41.75 | 3.51 |
982 | 1028 | 2.570135 | GTCCAGGTAGGTACTCGTAGG | 58.430 | 57.143 | 0.00 | 0.00 | 41.75 | 3.18 |
983 | 1029 | 1.492176 | TCCAGGTAGGTACTCGTAGGG | 59.508 | 57.143 | 0.00 | 0.00 | 41.75 | 3.53 |
984 | 1030 | 1.316651 | CAGGTAGGTACTCGTAGGGC | 58.683 | 60.000 | 0.00 | 0.00 | 41.75 | 5.19 |
985 | 1031 | 1.133853 | CAGGTAGGTACTCGTAGGGCT | 60.134 | 57.143 | 0.00 | 0.00 | 41.75 | 5.19 |
986 | 1032 | 1.568123 | AGGTAGGTACTCGTAGGGCTT | 59.432 | 52.381 | 0.00 | 0.00 | 41.75 | 4.35 |
987 | 1033 | 1.952990 | GGTAGGTACTCGTAGGGCTTC | 59.047 | 57.143 | 0.00 | 0.00 | 41.75 | 3.86 |
988 | 1034 | 1.601430 | GTAGGTACTCGTAGGGCTTCG | 59.399 | 57.143 | 0.00 | 0.00 | 41.75 | 3.79 |
989 | 1035 | 0.034670 | AGGTACTCGTAGGGCTTCGT | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
990 | 1036 | 0.100146 | GGTACTCGTAGGGCTTCGTG | 59.900 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
991 | 1037 | 0.100146 | GTACTCGTAGGGCTTCGTGG | 59.900 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
992 | 1038 | 1.660560 | TACTCGTAGGGCTTCGTGGC | 61.661 | 60.000 | 0.00 | 0.00 | 40.96 | 5.01 |
993 | 1039 | 4.124351 | TCGTAGGGCTTCGTGGCG | 62.124 | 66.667 | 0.00 | 0.00 | 42.84 | 5.69 |
1016 | 1062 | 0.687757 | CCCATGGAGACGAGGAAGGA | 60.688 | 60.000 | 15.22 | 0.00 | 0.00 | 3.36 |
1035 | 1081 | 0.460987 | AAATCCTGGAGCTTCGCGAG | 60.461 | 55.000 | 9.59 | 4.97 | 0.00 | 5.03 |
1088 | 1134 | 1.153745 | CCGACGAGGGCTCTTTGAG | 60.154 | 63.158 | 0.00 | 0.00 | 35.97 | 3.02 |
1128 | 1174 | 1.734655 | TTTTGGAGTCCTCTCTGCCT | 58.265 | 50.000 | 11.33 | 0.00 | 40.29 | 4.75 |
1209 | 1256 | 5.794894 | AGTTCATTTGTACTCCACCACTAG | 58.205 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1287 | 1341 | 8.379428 | AGTTTTTCCATTGCTAAATATTCCCT | 57.621 | 30.769 | 0.00 | 0.00 | 0.00 | 4.20 |
1491 | 1547 | 5.295787 | GGATTCGTATTTGACATAGTTGCCA | 59.704 | 40.000 | 0.00 | 0.00 | 0.00 | 4.92 |
1573 | 1630 | 7.502226 | CACAATATGCCTCTAAATACAAAGGGA | 59.498 | 37.037 | 0.00 | 0.00 | 33.50 | 4.20 |
1826 | 1906 | 1.140852 | CCTTCAGATATTCGTGGGCCA | 59.859 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
2008 | 2088 | 6.544197 | TGTTTCAAGAGTGCAATAGTTTACCA | 59.456 | 34.615 | 0.00 | 0.00 | 0.00 | 3.25 |
2114 | 2208 | 8.327429 | AGAAAAACAAAACATGAACGCTTATTG | 58.673 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
2141 | 2235 | 5.506708 | GCTACCAAAAAGGAGAGGGATAAA | 58.493 | 41.667 | 0.00 | 0.00 | 41.22 | 1.40 |
2183 | 2277 | 6.040504 | GGTTCCCAGGTGGATGAATATTAAAC | 59.959 | 42.308 | 0.00 | 0.00 | 44.66 | 2.01 |
2188 | 2282 | 8.217799 | CCCAGGTGGATGAATATTAAACTAAGA | 58.782 | 37.037 | 0.00 | 0.00 | 37.39 | 2.10 |
2189 | 2283 | 9.627123 | CCAGGTGGATGAATATTAAACTAAGAA | 57.373 | 33.333 | 0.00 | 0.00 | 37.39 | 2.52 |
2351 | 2447 | 6.487689 | TTTGTGAAAACATTTTGGAACACC | 57.512 | 33.333 | 0.00 | 0.00 | 39.29 | 4.16 |
2356 | 2456 | 7.095017 | TGTGAAAACATTTTGGAACACCTTTTC | 60.095 | 33.333 | 0.00 | 0.00 | 39.29 | 2.29 |
2682 | 2785 | 8.856153 | AGTGGTTAATTGTTTTCTTTGGTTTT | 57.144 | 26.923 | 0.00 | 0.00 | 0.00 | 2.43 |
2711 | 2814 | 6.810182 | GCAAGTTCTATGAATTGCTTGAATGT | 59.190 | 34.615 | 0.00 | 0.00 | 43.59 | 2.71 |
2723 | 2826 | 5.295431 | TGCTTGAATGTTCGGTAATTCTG | 57.705 | 39.130 | 0.00 | 0.00 | 34.52 | 3.02 |
2902 | 3005 | 8.540388 | ACAATAACTTCAGATAGCCACTTAAGA | 58.460 | 33.333 | 10.09 | 0.00 | 0.00 | 2.10 |
2929 | 3032 | 7.479980 | TGCTGTTTTTATTCATAGGTACATGC | 58.520 | 34.615 | 0.00 | 0.00 | 0.00 | 4.06 |
3083 | 3186 | 6.206634 | GGGAACTACACATGATGTTCTCAAAA | 59.793 | 38.462 | 0.00 | 0.00 | 43.19 | 2.44 |
3170 | 3285 | 5.054477 | TCAGCTTCTTAACTACTTTTGCGT | 58.946 | 37.500 | 0.00 | 0.00 | 0.00 | 5.24 |
3225 | 3346 | 3.052329 | AGAATCCTCCTCCTTGATTCCC | 58.948 | 50.000 | 7.61 | 0.00 | 43.36 | 3.97 |
3227 | 3348 | 0.421495 | TCCTCCTCCTTGATTCCCCA | 59.579 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
3293 | 3415 | 6.201044 | CGATTTTACTTCCAGTAGCCACATAG | 59.799 | 42.308 | 0.00 | 0.00 | 31.47 | 2.23 |
3295 | 3417 | 2.187958 | ACTTCCAGTAGCCACATAGCA | 58.812 | 47.619 | 0.00 | 0.00 | 34.23 | 3.49 |
3315 | 3437 | 4.158394 | AGCATGCAAATACCCACTTTACTG | 59.842 | 41.667 | 21.98 | 0.00 | 0.00 | 2.74 |
3551 | 3674 | 0.400213 | TTGAAGTCAACCTCGGCCAT | 59.600 | 50.000 | 2.24 | 0.00 | 0.00 | 4.40 |
3646 | 3769 | 8.863049 | CAGTACAATCTGCCAACATTTAAAATC | 58.137 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
3658 | 3781 | 5.003804 | ACATTTAAAATCGCTCAGTCAGGT | 58.996 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
3682 | 3805 | 4.280677 | TGCTTGAAAAAGATTCGGATTGGT | 59.719 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
3723 | 3846 | 7.272037 | TCAGGTTGGTTGAAGACTAAATTTC | 57.728 | 36.000 | 0.00 | 0.00 | 29.93 | 2.17 |
3961 | 4084 | 3.244044 | CCTCTTCCTACAGCCTTGATAGC | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 2.97 |
3971 | 4094 | 0.105039 | CCTTGATAGCCCGTGTCCTC | 59.895 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4170 | 4293 | 7.014134 | TCAGGTGAAGTCTTATTTTGCATTTCA | 59.986 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
4185 | 4308 | 5.688823 | TGCATTTCAACAACTGATAACTCG | 58.311 | 37.500 | 0.00 | 0.00 | 32.78 | 4.18 |
4197 | 4320 | 8.904834 | ACAACTGATAACTCGTAACTGAGATAT | 58.095 | 33.333 | 0.00 | 0.00 | 39.35 | 1.63 |
4224 | 4348 | 4.343526 | ACCATATGTCATCTGAGACCACTC | 59.656 | 45.833 | 1.24 | 0.00 | 42.88 | 3.51 |
4279 | 4403 | 4.742417 | TCACAAAACCAATCAATATGGCG | 58.258 | 39.130 | 0.00 | 0.00 | 41.89 | 5.69 |
4336 | 4463 | 1.470098 | CACAGAAAGCAGGGGAATTCG | 59.530 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
4344 | 4471 | 2.304761 | AGCAGGGGAATTCGTTGAAGTA | 59.695 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
4375 | 4502 | 2.572209 | TTTTGGCCTGTACCCTGTAC | 57.428 | 50.000 | 3.32 | 0.00 | 0.00 | 2.90 |
4376 | 4503 | 0.694196 | TTTGGCCTGTACCCTGTACC | 59.306 | 55.000 | 3.32 | 0.00 | 0.00 | 3.34 |
4377 | 4504 | 1.202769 | TTGGCCTGTACCCTGTACCC | 61.203 | 60.000 | 3.32 | 0.00 | 0.00 | 3.69 |
4379 | 4506 | 1.623542 | GGCCTGTACCCTGTACCCTG | 61.624 | 65.000 | 0.00 | 0.00 | 0.00 | 4.45 |
4381 | 4508 | 1.620524 | GCCTGTACCCTGTACCCTGTA | 60.621 | 57.143 | 2.22 | 0.00 | 0.00 | 2.74 |
4382 | 4509 | 2.385803 | CCTGTACCCTGTACCCTGTAG | 58.614 | 57.143 | 2.22 | 0.00 | 0.00 | 2.74 |
4383 | 4510 | 2.385803 | CTGTACCCTGTACCCTGTAGG | 58.614 | 57.143 | 2.22 | 0.00 | 43.78 | 3.18 |
4384 | 4511 | 1.117994 | GTACCCTGTACCCTGTAGGC | 58.882 | 60.000 | 0.00 | 0.00 | 40.58 | 3.93 |
4385 | 4512 | 0.031817 | TACCCTGTACCCTGTAGGCC | 60.032 | 60.000 | 0.00 | 0.00 | 40.58 | 5.19 |
4387 | 4514 | 1.338136 | CCCTGTACCCTGTAGGCCTG | 61.338 | 65.000 | 17.99 | 0.00 | 40.58 | 4.85 |
4388 | 4515 | 0.617820 | CCTGTACCCTGTAGGCCTGT | 60.618 | 60.000 | 17.99 | 6.73 | 40.58 | 4.00 |
4389 | 4516 | 1.342674 | CCTGTACCCTGTAGGCCTGTA | 60.343 | 57.143 | 17.99 | 5.54 | 40.58 | 2.74 |
4390 | 4517 | 1.755380 | CTGTACCCTGTAGGCCTGTAC | 59.245 | 57.143 | 17.99 | 18.52 | 40.58 | 2.90 |
4391 | 4518 | 1.117994 | GTACCCTGTAGGCCTGTACC | 58.882 | 60.000 | 17.99 | 0.57 | 40.58 | 3.34 |
4392 | 4519 | 0.031817 | TACCCTGTAGGCCTGTACCC | 60.032 | 60.000 | 17.99 | 0.00 | 40.58 | 3.69 |
4393 | 4520 | 1.003051 | CCCTGTAGGCCTGTACCCT | 59.997 | 63.158 | 17.99 | 0.00 | 36.47 | 4.34 |
4394 | 4521 | 1.338136 | CCCTGTAGGCCTGTACCCTG | 61.338 | 65.000 | 17.99 | 2.08 | 33.88 | 4.45 |
4395 | 4522 | 0.617820 | CCTGTAGGCCTGTACCCTGT | 60.618 | 60.000 | 17.99 | 0.00 | 33.88 | 4.00 |
4396 | 4523 | 1.342674 | CCTGTAGGCCTGTACCCTGTA | 60.343 | 57.143 | 17.99 | 0.00 | 33.88 | 2.74 |
4397 | 4524 | 1.755380 | CTGTAGGCCTGTACCCTGTAC | 59.245 | 57.143 | 17.99 | 1.93 | 33.88 | 2.90 |
4425 | 4733 | 1.341209 | GCCTTTTTGTAGCCTGCTTGT | 59.659 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
4426 | 4734 | 2.224042 | GCCTTTTTGTAGCCTGCTTGTT | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
4427 | 4735 | 3.741075 | GCCTTTTTGTAGCCTGCTTGTTT | 60.741 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
4428 | 4736 | 4.441792 | CCTTTTTGTAGCCTGCTTGTTTT | 58.558 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
4429 | 4737 | 4.875536 | CCTTTTTGTAGCCTGCTTGTTTTT | 59.124 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
4430 | 4738 | 5.220643 | CCTTTTTGTAGCCTGCTTGTTTTTG | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
4435 | 4749 | 2.631267 | AGCCTGCTTGTTTTTGGTTTG | 58.369 | 42.857 | 0.00 | 0.00 | 0.00 | 2.93 |
4551 | 4865 | 1.599542 | GGCATGAGGTAACAATCGAGC | 59.400 | 52.381 | 0.00 | 0.00 | 41.41 | 5.03 |
4601 | 4915 | 8.154856 | GCCTAACTAGGATATGAACATTTACCA | 58.845 | 37.037 | 6.98 | 0.00 | 46.63 | 3.25 |
4753 | 5067 | 5.071115 | AGACTGGACATAAGGATTAAGCTCC | 59.929 | 44.000 | 0.00 | 0.00 | 32.17 | 4.70 |
4779 | 5093 | 2.017049 | CCTTTAGGGCTCATTCGGTTG | 58.983 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
4848 | 5162 | 3.370315 | CCCTCTCTCCACTTCAATCCTTG | 60.370 | 52.174 | 0.00 | 0.00 | 0.00 | 3.61 |
4851 | 5165 | 1.635487 | TCTCCACTTCAATCCTTGGGG | 59.365 | 52.381 | 0.00 | 0.00 | 0.00 | 4.96 |
4864 | 5178 | 2.925653 | TCCTTGGGGATTTTCCATGAGA | 59.074 | 45.455 | 0.00 | 0.00 | 38.64 | 3.27 |
4903 | 5217 | 7.646548 | AAGAATCCTTAGAAATTAGGCCAAC | 57.353 | 36.000 | 5.01 | 0.00 | 0.00 | 3.77 |
4907 | 5221 | 4.644685 | TCCTTAGAAATTAGGCCAACATGC | 59.355 | 41.667 | 5.01 | 0.00 | 0.00 | 4.06 |
4930 | 5244 | 8.922931 | TGCACACAATCATATGGAATTAGTAT | 57.077 | 30.769 | 2.13 | 0.00 | 0.00 | 2.12 |
5001 | 5315 | 4.524714 | TCCAAAAATCCTGCAAACCGAATA | 59.475 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
5173 | 5487 | 4.037208 | CCATGGCTGATCAACTTTATGTCC | 59.963 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
5243 | 5557 | 7.571080 | AGCTAAACCTAGTCTACATCAGTAC | 57.429 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
5264 | 5578 | 9.526713 | CAGTACATATGATATTAGTGATGAGGC | 57.473 | 37.037 | 10.38 | 0.00 | 0.00 | 4.70 |
5304 | 5618 | 6.713762 | TCAAGTCACAACATGGATTTCTTT | 57.286 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
5305 | 5619 | 7.111247 | TCAAGTCACAACATGGATTTCTTTT | 57.889 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |
5496 | 5812 | 2.260247 | GCATTCTGCTGACAAGGCA | 58.740 | 52.632 | 0.00 | 0.00 | 40.96 | 4.75 |
5506 | 5822 | 1.605710 | CTGACAAGGCAAAGGTGACTG | 59.394 | 52.381 | 0.00 | 0.00 | 45.00 | 3.51 |
5572 | 5888 | 4.030216 | TGTACATAATCCTCTGGCAGTCA | 58.970 | 43.478 | 15.27 | 0.00 | 0.00 | 3.41 |
5573 | 5889 | 3.550437 | ACATAATCCTCTGGCAGTCAC | 57.450 | 47.619 | 15.27 | 0.00 | 0.00 | 3.67 |
5574 | 5890 | 3.110705 | ACATAATCCTCTGGCAGTCACT | 58.889 | 45.455 | 15.27 | 0.00 | 0.00 | 3.41 |
5610 | 5926 | 5.052481 | CCATGCAGTGAGATTATCGAAGAA | 58.948 | 41.667 | 0.00 | 0.00 | 43.58 | 2.52 |
5638 | 5954 | 6.729187 | AGTGAACAGAACACATCTTTTAAGC | 58.271 | 36.000 | 0.00 | 0.00 | 40.25 | 3.09 |
5721 | 6037 | 9.660180 | GAAAATAAGTCTTTCACTAGTCCTGAT | 57.340 | 33.333 | 0.00 | 0.00 | 32.30 | 2.90 |
5759 | 6075 | 3.668656 | GCACAGCAAGTCGAAAATAAACC | 59.331 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
5761 | 6077 | 3.810941 | ACAGCAAGTCGAAAATAAACCGA | 59.189 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
5892 | 6208 | 0.320374 | ATGCAACGTCGGAAGAAGGA | 59.680 | 50.000 | 0.00 | 0.00 | 44.16 | 3.36 |
5974 | 6290 | 1.595311 | TGGGTATCCTCTTGCCACAT | 58.405 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
6004 | 6320 | 7.348815 | TCATGATTCAAGGTCCACATTAAGAT | 58.651 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
6109 | 6427 | 5.770663 | TCTTCCTTTATGTAGAGAGATCCGG | 59.229 | 44.000 | 0.00 | 0.00 | 0.00 | 5.14 |
6121 | 6439 | 6.235231 | AGAGAGATCCGGCAAACTTATTTA | 57.765 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
6122 | 6440 | 6.650120 | AGAGAGATCCGGCAAACTTATTTAA | 58.350 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
6183 | 6501 | 5.864628 | AGCGAAAGTGATTCTCCTAAAAC | 57.135 | 39.130 | 0.00 | 0.00 | 35.79 | 2.43 |
6226 | 6544 | 4.090729 | CGACGACAAAATCCATGACATTG | 58.909 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
6287 | 6605 | 1.069204 | GCGATGGCCTCTATCAGAACA | 59.931 | 52.381 | 3.32 | 0.00 | 0.00 | 3.18 |
6297 | 6615 | 5.551233 | CCTCTATCAGAACAGTTTCCACAA | 58.449 | 41.667 | 0.00 | 0.00 | 31.28 | 3.33 |
6301 | 6619 | 4.163441 | TCAGAACAGTTTCCACAATGGA | 57.837 | 40.909 | 0.00 | 0.00 | 46.61 | 3.41 |
6362 | 6680 | 1.421410 | CTGCTTAACGCCTAGCACCG | 61.421 | 60.000 | 2.24 | 0.00 | 42.12 | 4.94 |
6382 | 6700 | 2.287668 | CGTAGGATGACGAGAACCCATC | 60.288 | 54.545 | 0.00 | 0.00 | 45.82 | 3.51 |
6404 | 6722 | 1.972588 | AGGGGCTCTCATGGTTAACT | 58.027 | 50.000 | 5.42 | 0.00 | 0.00 | 2.24 |
6410 | 6728 | 4.384647 | GGGCTCTCATGGTTAACTCTTGAT | 60.385 | 45.833 | 5.42 | 0.00 | 0.00 | 2.57 |
6411 | 6729 | 5.189180 | GGCTCTCATGGTTAACTCTTGATT | 58.811 | 41.667 | 5.42 | 0.00 | 0.00 | 2.57 |
6472 | 6790 | 3.754219 | TGGAACATGGGGATCAAATGA | 57.246 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
6694 | 7014 | 6.395629 | ACAGATGATTTGCTCAAAAGATTGG | 58.604 | 36.000 | 0.00 | 0.00 | 37.44 | 3.16 |
6717 | 7037 | 5.049336 | GGCTTCTTCTCTTTTACTCCACAAC | 60.049 | 44.000 | 0.00 | 0.00 | 0.00 | 3.32 |
6775 | 7804 | 7.609760 | TTATAACTTTGCGAGATCACAACAT | 57.390 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
6937 | 7977 | 3.054802 | CACTCCATGGCTTACTTCCTCTT | 60.055 | 47.826 | 6.96 | 0.00 | 0.00 | 2.85 |
6954 | 7994 | 0.099968 | CTTCATTGCCATCAGTGCCG | 59.900 | 55.000 | 0.00 | 0.00 | 30.90 | 5.69 |
6970 | 8010 | 0.443478 | GCCGCCATTGTTTTCATTGC | 59.557 | 50.000 | 0.00 | 0.00 | 32.00 | 3.56 |
6982 | 8034 | 2.676632 | TTCATTGCCATCCATTGCAC | 57.323 | 45.000 | 0.00 | 0.00 | 37.18 | 4.57 |
6988 | 8040 | 1.305129 | CCATCCATTGCACCACCCA | 60.305 | 57.895 | 0.00 | 0.00 | 0.00 | 4.51 |
7031 | 8085 | 4.495911 | TGCTTCTCATGTCGCTAGATAG | 57.504 | 45.455 | 0.00 | 0.00 | 0.00 | 2.08 |
7043 | 8097 | 1.004044 | GCTAGATAGCCATGGCACCAT | 59.996 | 52.381 | 37.18 | 25.77 | 43.39 | 3.55 |
7067 | 8121 | 1.061735 | TGCCTCCCATACCACCTATGA | 60.062 | 52.381 | 0.00 | 0.00 | 35.06 | 2.15 |
7069 | 8123 | 1.618837 | CCTCCCATACCACCTATGACG | 59.381 | 57.143 | 0.00 | 0.00 | 35.06 | 4.35 |
7177 | 8231 | 0.948623 | CCACCAACACTTGATCGCGA | 60.949 | 55.000 | 13.09 | 13.09 | 0.00 | 5.87 |
7193 | 8247 | 2.228103 | TCGCGACACTCTCAAAGTATGT | 59.772 | 45.455 | 3.71 | 0.00 | 36.07 | 2.29 |
7265 | 8319 | 3.258872 | CCTTGTTCAATGCCCTTGATTCA | 59.741 | 43.478 | 0.21 | 1.65 | 43.30 | 2.57 |
7297 | 8351 | 1.650528 | CACCTTCCTCTCCTCAACCT | 58.349 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
7315 | 8372 | 1.475403 | CTCTGCCTTCTCCTCGGTTA | 58.525 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
35 | 36 | 9.783256 | GTTTGCTAAGTTTGACCGAATTTATAT | 57.217 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
36 | 37 | 9.005777 | AGTTTGCTAAGTTTGACCGAATTTATA | 57.994 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
37 | 38 | 7.882179 | AGTTTGCTAAGTTTGACCGAATTTAT | 58.118 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
38 | 39 | 7.266922 | AGTTTGCTAAGTTTGACCGAATTTA | 57.733 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
39 | 40 | 6.144078 | AGTTTGCTAAGTTTGACCGAATTT | 57.856 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
40 | 41 | 5.767816 | AGTTTGCTAAGTTTGACCGAATT | 57.232 | 34.783 | 0.00 | 0.00 | 0.00 | 2.17 |
41 | 42 | 5.767816 | AAGTTTGCTAAGTTTGACCGAAT | 57.232 | 34.783 | 0.00 | 0.00 | 0.00 | 3.34 |
42 | 43 | 5.570234 | AAAGTTTGCTAAGTTTGACCGAA | 57.430 | 34.783 | 12.06 | 0.00 | 35.95 | 4.30 |
49 | 50 | 7.094377 | TGTCTGAAGTCAAAGTTTGCTAAGTTT | 60.094 | 33.333 | 10.90 | 7.74 | 37.37 | 2.66 |
50 | 51 | 6.374333 | TGTCTGAAGTCAAAGTTTGCTAAGTT | 59.626 | 34.615 | 10.90 | 3.39 | 0.00 | 2.66 |
51 | 52 | 5.880332 | TGTCTGAAGTCAAAGTTTGCTAAGT | 59.120 | 36.000 | 10.90 | 0.00 | 0.00 | 2.24 |
52 | 53 | 6.363577 | TGTCTGAAGTCAAAGTTTGCTAAG | 57.636 | 37.500 | 10.90 | 11.57 | 0.00 | 2.18 |
53 | 54 | 6.751514 | TTGTCTGAAGTCAAAGTTTGCTAA | 57.248 | 33.333 | 10.90 | 3.76 | 0.00 | 3.09 |
54 | 55 | 6.677920 | GCTTTGTCTGAAGTCAAAGTTTGCTA | 60.678 | 38.462 | 22.33 | 0.00 | 45.88 | 3.49 |
55 | 56 | 5.643379 | TTTGTCTGAAGTCAAAGTTTGCT | 57.357 | 34.783 | 10.90 | 8.49 | 31.49 | 3.91 |
56 | 57 | 4.266265 | GCTTTGTCTGAAGTCAAAGTTTGC | 59.734 | 41.667 | 22.33 | 11.50 | 45.88 | 3.68 |
57 | 58 | 5.644644 | AGCTTTGTCTGAAGTCAAAGTTTG | 58.355 | 37.500 | 22.33 | 9.44 | 45.88 | 2.93 |
58 | 59 | 5.904362 | AGCTTTGTCTGAAGTCAAAGTTT | 57.096 | 34.783 | 22.33 | 13.42 | 45.88 | 2.66 |
59 | 60 | 7.067494 | ACATTAGCTTTGTCTGAAGTCAAAGTT | 59.933 | 33.333 | 22.33 | 20.14 | 45.88 | 2.66 |
60 | 61 | 6.543831 | ACATTAGCTTTGTCTGAAGTCAAAGT | 59.456 | 34.615 | 22.33 | 15.15 | 45.88 | 2.66 |
61 | 62 | 6.854892 | CACATTAGCTTTGTCTGAAGTCAAAG | 59.145 | 38.462 | 19.34 | 19.34 | 46.44 | 2.77 |
62 | 63 | 6.728200 | CACATTAGCTTTGTCTGAAGTCAAA | 58.272 | 36.000 | 0.00 | 3.36 | 33.44 | 2.69 |
63 | 64 | 5.277974 | GCACATTAGCTTTGTCTGAAGTCAA | 60.278 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
64 | 65 | 4.214119 | GCACATTAGCTTTGTCTGAAGTCA | 59.786 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
65 | 66 | 4.667668 | CGCACATTAGCTTTGTCTGAAGTC | 60.668 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
66 | 67 | 3.187227 | CGCACATTAGCTTTGTCTGAAGT | 59.813 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
67 | 68 | 3.425359 | CCGCACATTAGCTTTGTCTGAAG | 60.425 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
68 | 69 | 2.483877 | CCGCACATTAGCTTTGTCTGAA | 59.516 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
69 | 70 | 2.076100 | CCGCACATTAGCTTTGTCTGA | 58.924 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
70 | 71 | 2.076100 | TCCGCACATTAGCTTTGTCTG | 58.924 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
71 | 72 | 2.289694 | ACTCCGCACATTAGCTTTGTCT | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
72 | 73 | 2.076863 | ACTCCGCACATTAGCTTTGTC | 58.923 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
73 | 74 | 2.185004 | ACTCCGCACATTAGCTTTGT | 57.815 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
74 | 75 | 4.678509 | TTTACTCCGCACATTAGCTTTG | 57.321 | 40.909 | 0.00 | 0.00 | 0.00 | 2.77 |
75 | 76 | 5.699097 | TTTTTACTCCGCACATTAGCTTT | 57.301 | 34.783 | 0.00 | 0.00 | 0.00 | 3.51 |
94 | 95 | 5.011738 | TGTGAATACTCTCTCGGGTCTTTTT | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
95 | 96 | 4.527038 | TGTGAATACTCTCTCGGGTCTTTT | 59.473 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
96 | 97 | 4.087182 | TGTGAATACTCTCTCGGGTCTTT | 58.913 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
97 | 98 | 3.698289 | TGTGAATACTCTCTCGGGTCTT | 58.302 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
98 | 99 | 3.367646 | TGTGAATACTCTCTCGGGTCT | 57.632 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
99 | 100 | 5.968528 | ATATGTGAATACTCTCTCGGGTC | 57.031 | 43.478 | 0.00 | 0.00 | 0.00 | 4.46 |
100 | 101 | 5.598830 | ACAATATGTGAATACTCTCTCGGGT | 59.401 | 40.000 | 0.00 | 0.00 | 0.00 | 5.28 |
101 | 102 | 6.015856 | AGACAATATGTGAATACTCTCTCGGG | 60.016 | 42.308 | 0.00 | 0.00 | 0.00 | 5.14 |
102 | 103 | 6.976088 | AGACAATATGTGAATACTCTCTCGG | 58.024 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
103 | 104 | 7.918033 | ACAAGACAATATGTGAATACTCTCTCG | 59.082 | 37.037 | 0.00 | 0.00 | 0.00 | 4.04 |
119 | 120 | 6.711194 | TCGGAATTGGTGTTTACAAGACAATA | 59.289 | 34.615 | 8.27 | 0.00 | 31.37 | 1.90 |
131 | 132 | 9.203421 | GAAAATTCTTATTTCGGAATTGGTGTT | 57.797 | 29.630 | 0.00 | 0.00 | 40.58 | 3.32 |
209 | 210 | 3.733224 | CGCTTGTGTCTATACTGATGCTC | 59.267 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
210 | 211 | 3.711086 | CGCTTGTGTCTATACTGATGCT | 58.289 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
211 | 212 | 2.219674 | GCGCTTGTGTCTATACTGATGC | 59.780 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
212 | 213 | 3.711086 | AGCGCTTGTGTCTATACTGATG | 58.289 | 45.455 | 2.64 | 0.00 | 0.00 | 3.07 |
213 | 214 | 3.381590 | TGAGCGCTTGTGTCTATACTGAT | 59.618 | 43.478 | 13.26 | 0.00 | 0.00 | 2.90 |
214 | 215 | 2.752903 | TGAGCGCTTGTGTCTATACTGA | 59.247 | 45.455 | 13.26 | 0.00 | 0.00 | 3.41 |
215 | 216 | 3.150848 | TGAGCGCTTGTGTCTATACTG | 57.849 | 47.619 | 13.26 | 0.00 | 0.00 | 2.74 |
216 | 217 | 5.713792 | ATATGAGCGCTTGTGTCTATACT | 57.286 | 39.130 | 13.26 | 0.00 | 0.00 | 2.12 |
217 | 218 | 6.305877 | GTGTATATGAGCGCTTGTGTCTATAC | 59.694 | 42.308 | 13.26 | 15.61 | 0.00 | 1.47 |
218 | 219 | 6.379386 | GTGTATATGAGCGCTTGTGTCTATA | 58.621 | 40.000 | 13.26 | 4.61 | 0.00 | 1.31 |
219 | 220 | 5.223382 | GTGTATATGAGCGCTTGTGTCTAT | 58.777 | 41.667 | 13.26 | 5.57 | 0.00 | 1.98 |
220 | 221 | 4.607955 | GTGTATATGAGCGCTTGTGTCTA | 58.392 | 43.478 | 13.26 | 0.00 | 0.00 | 2.59 |
221 | 222 | 3.448686 | GTGTATATGAGCGCTTGTGTCT | 58.551 | 45.455 | 13.26 | 0.00 | 0.00 | 3.41 |
223 | 224 | 2.193447 | CGTGTATATGAGCGCTTGTGT | 58.807 | 47.619 | 13.26 | 4.27 | 0.00 | 3.72 |
224 | 225 | 1.071239 | GCGTGTATATGAGCGCTTGTG | 60.071 | 52.381 | 13.26 | 0.00 | 45.48 | 3.33 |
225 | 226 | 1.209128 | GCGTGTATATGAGCGCTTGT | 58.791 | 50.000 | 13.26 | 5.98 | 45.48 | 3.16 |
226 | 227 | 0.159554 | CGCGTGTATATGAGCGCTTG | 59.840 | 55.000 | 13.26 | 0.00 | 46.56 | 4.01 |
227 | 228 | 2.506544 | CGCGTGTATATGAGCGCTT | 58.493 | 52.632 | 13.26 | 0.00 | 46.56 | 4.68 |
228 | 229 | 4.228451 | CGCGTGTATATGAGCGCT | 57.772 | 55.556 | 11.27 | 11.27 | 46.56 | 5.92 |
231 | 232 | 0.701303 | GTACGCGCGTGTATATGAGC | 59.299 | 55.000 | 42.78 | 16.54 | 35.57 | 4.26 |
232 | 233 | 1.707117 | GTGTACGCGCGTGTATATGAG | 59.293 | 52.381 | 42.78 | 7.98 | 0.00 | 2.90 |
233 | 234 | 1.331447 | AGTGTACGCGCGTGTATATGA | 59.669 | 47.619 | 42.78 | 20.80 | 0.00 | 2.15 |
234 | 235 | 1.707117 | GAGTGTACGCGCGTGTATATG | 59.293 | 52.381 | 42.78 | 9.64 | 0.00 | 1.78 |
235 | 236 | 1.331447 | TGAGTGTACGCGCGTGTATAT | 59.669 | 47.619 | 42.78 | 25.04 | 0.00 | 0.86 |
236 | 237 | 0.726256 | TGAGTGTACGCGCGTGTATA | 59.274 | 50.000 | 42.78 | 27.61 | 0.00 | 1.47 |
237 | 238 | 0.795735 | GTGAGTGTACGCGCGTGTAT | 60.796 | 55.000 | 42.78 | 26.12 | 0.00 | 2.29 |
238 | 239 | 1.440850 | GTGAGTGTACGCGCGTGTA | 60.441 | 57.895 | 42.78 | 27.35 | 0.00 | 2.90 |
239 | 240 | 2.728383 | GTGAGTGTACGCGCGTGT | 60.728 | 61.111 | 42.78 | 29.73 | 0.00 | 4.49 |
240 | 241 | 3.467119 | GGTGAGTGTACGCGCGTG | 61.467 | 66.667 | 42.78 | 19.78 | 0.00 | 5.34 |
241 | 242 | 4.712425 | GGGTGAGTGTACGCGCGT | 62.712 | 66.667 | 39.05 | 39.05 | 0.00 | 6.01 |
243 | 244 | 2.012902 | ATAGGGGTGAGTGTACGCGC | 62.013 | 60.000 | 5.73 | 0.00 | 34.64 | 6.86 |
244 | 245 | 0.248907 | CATAGGGGTGAGTGTACGCG | 60.249 | 60.000 | 3.53 | 3.53 | 34.64 | 6.01 |
245 | 246 | 1.108776 | TCATAGGGGTGAGTGTACGC | 58.891 | 55.000 | 0.00 | 0.00 | 0.00 | 4.42 |
246 | 247 | 2.494471 | TGTTCATAGGGGTGAGTGTACG | 59.506 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
247 | 248 | 3.259876 | TGTGTTCATAGGGGTGAGTGTAC | 59.740 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
248 | 249 | 3.259876 | GTGTGTTCATAGGGGTGAGTGTA | 59.740 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
249 | 250 | 2.038557 | GTGTGTTCATAGGGGTGAGTGT | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
250 | 251 | 2.038426 | TGTGTGTTCATAGGGGTGAGTG | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
251 | 252 | 2.038557 | GTGTGTGTTCATAGGGGTGAGT | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
252 | 253 | 2.699954 | GTGTGTGTTCATAGGGGTGAG | 58.300 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
253 | 254 | 1.001520 | CGTGTGTGTTCATAGGGGTGA | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
254 | 255 | 1.438651 | CGTGTGTGTTCATAGGGGTG | 58.561 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
255 | 256 | 0.321298 | GCGTGTGTGTTCATAGGGGT | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 4.95 |
256 | 257 | 0.321210 | TGCGTGTGTGTTCATAGGGG | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
257 | 258 | 0.796312 | GTGCGTGTGTGTTCATAGGG | 59.204 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
258 | 259 | 1.194547 | GTGTGCGTGTGTGTTCATAGG | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
259 | 260 | 1.194547 | GGTGTGCGTGTGTGTTCATAG | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 2.23 |
260 | 261 | 1.222300 | GGTGTGCGTGTGTGTTCATA | 58.778 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
261 | 262 | 1.444119 | GGGTGTGCGTGTGTGTTCAT | 61.444 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
262 | 263 | 2.109739 | GGGTGTGCGTGTGTGTTCA | 61.110 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
263 | 264 | 0.531090 | TAGGGTGTGCGTGTGTGTTC | 60.531 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
264 | 265 | 0.812412 | GTAGGGTGTGCGTGTGTGTT | 60.812 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
265 | 266 | 1.227438 | GTAGGGTGTGCGTGTGTGT | 60.227 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
266 | 267 | 1.959226 | GGTAGGGTGTGCGTGTGTG | 60.959 | 63.158 | 0.00 | 0.00 | 0.00 | 3.82 |
267 | 268 | 2.424302 | GGTAGGGTGTGCGTGTGT | 59.576 | 61.111 | 0.00 | 0.00 | 0.00 | 3.72 |
268 | 269 | 1.537814 | TAGGGTAGGGTGTGCGTGTG | 61.538 | 60.000 | 0.00 | 0.00 | 0.00 | 3.82 |
269 | 270 | 0.616679 | ATAGGGTAGGGTGTGCGTGT | 60.617 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
270 | 271 | 0.179084 | CATAGGGTAGGGTGTGCGTG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
271 | 272 | 0.324923 | TCATAGGGTAGGGTGTGCGT | 60.325 | 55.000 | 0.00 | 0.00 | 0.00 | 5.24 |
272 | 273 | 0.389391 | CTCATAGGGTAGGGTGTGCG | 59.611 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
273 | 274 | 0.106894 | GCTCATAGGGTAGGGTGTGC | 59.893 | 60.000 | 0.00 | 0.00 | 0.00 | 4.57 |
274 | 275 | 1.139058 | GTGCTCATAGGGTAGGGTGTG | 59.861 | 57.143 | 0.00 | 0.00 | 0.00 | 3.82 |
275 | 276 | 1.497161 | GTGCTCATAGGGTAGGGTGT | 58.503 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
276 | 277 | 0.759346 | GGTGCTCATAGGGTAGGGTG | 59.241 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
277 | 278 | 0.642710 | AGGTGCTCATAGGGTAGGGT | 59.357 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
278 | 279 | 1.343069 | GAGGTGCTCATAGGGTAGGG | 58.657 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
279 | 280 | 1.343069 | GGAGGTGCTCATAGGGTAGG | 58.657 | 60.000 | 0.00 | 0.00 | 31.08 | 3.18 |
280 | 281 | 0.962489 | CGGAGGTGCTCATAGGGTAG | 59.038 | 60.000 | 0.00 | 0.00 | 31.08 | 3.18 |
281 | 282 | 0.554305 | TCGGAGGTGCTCATAGGGTA | 59.446 | 55.000 | 0.00 | 0.00 | 31.08 | 3.69 |
282 | 283 | 0.325296 | TTCGGAGGTGCTCATAGGGT | 60.325 | 55.000 | 0.00 | 0.00 | 31.08 | 4.34 |
283 | 284 | 0.830648 | TTTCGGAGGTGCTCATAGGG | 59.169 | 55.000 | 0.00 | 0.00 | 31.08 | 3.53 |
284 | 285 | 1.757118 | TCTTTCGGAGGTGCTCATAGG | 59.243 | 52.381 | 0.00 | 0.00 | 31.08 | 2.57 |
285 | 286 | 2.428890 | AGTCTTTCGGAGGTGCTCATAG | 59.571 | 50.000 | 0.00 | 0.00 | 31.08 | 2.23 |
286 | 287 | 2.166459 | CAGTCTTTCGGAGGTGCTCATA | 59.834 | 50.000 | 0.00 | 0.00 | 31.08 | 2.15 |
287 | 288 | 1.066573 | CAGTCTTTCGGAGGTGCTCAT | 60.067 | 52.381 | 0.00 | 0.00 | 31.08 | 2.90 |
288 | 289 | 0.318441 | CAGTCTTTCGGAGGTGCTCA | 59.682 | 55.000 | 0.00 | 0.00 | 31.08 | 4.26 |
289 | 290 | 0.603569 | TCAGTCTTTCGGAGGTGCTC | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
290 | 291 | 0.605589 | CTCAGTCTTTCGGAGGTGCT | 59.394 | 55.000 | 0.00 | 0.00 | 35.32 | 4.40 |
291 | 292 | 1.016653 | GCTCAGTCTTTCGGAGGTGC | 61.017 | 60.000 | 0.00 | 0.00 | 38.48 | 5.01 |
292 | 293 | 0.390472 | GGCTCAGTCTTTCGGAGGTG | 60.390 | 60.000 | 0.00 | 0.00 | 38.48 | 4.00 |
293 | 294 | 0.832135 | TGGCTCAGTCTTTCGGAGGT | 60.832 | 55.000 | 0.00 | 0.00 | 38.48 | 3.85 |
294 | 295 | 0.321671 | TTGGCTCAGTCTTTCGGAGG | 59.678 | 55.000 | 0.00 | 0.00 | 38.48 | 4.30 |
295 | 296 | 1.001406 | AGTTGGCTCAGTCTTTCGGAG | 59.999 | 52.381 | 0.00 | 0.00 | 40.44 | 4.63 |
296 | 297 | 1.048601 | AGTTGGCTCAGTCTTTCGGA | 58.951 | 50.000 | 0.00 | 0.00 | 0.00 | 4.55 |
297 | 298 | 1.801178 | GAAGTTGGCTCAGTCTTTCGG | 59.199 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
298 | 299 | 2.760374 | AGAAGTTGGCTCAGTCTTTCG | 58.240 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
299 | 300 | 6.809630 | ATTAAGAAGTTGGCTCAGTCTTTC | 57.190 | 37.500 | 0.00 | 0.00 | 31.28 | 2.62 |
300 | 301 | 7.001073 | AGAATTAAGAAGTTGGCTCAGTCTTT | 58.999 | 34.615 | 0.00 | 0.00 | 31.28 | 2.52 |
301 | 302 | 6.538263 | AGAATTAAGAAGTTGGCTCAGTCTT | 58.462 | 36.000 | 0.00 | 0.00 | 33.32 | 3.01 |
302 | 303 | 6.120507 | AGAATTAAGAAGTTGGCTCAGTCT | 57.879 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
303 | 304 | 6.428159 | TCAAGAATTAAGAAGTTGGCTCAGTC | 59.572 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
304 | 305 | 6.299141 | TCAAGAATTAAGAAGTTGGCTCAGT | 58.701 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
305 | 306 | 6.808008 | TCAAGAATTAAGAAGTTGGCTCAG | 57.192 | 37.500 | 0.00 | 0.00 | 0.00 | 3.35 |
306 | 307 | 7.765695 | AATCAAGAATTAAGAAGTTGGCTCA | 57.234 | 32.000 | 0.00 | 0.00 | 0.00 | 4.26 |
386 | 398 | 1.432657 | GAGCCGACCGAGGAGTTAC | 59.567 | 63.158 | 0.00 | 0.00 | 0.00 | 2.50 |
583 | 606 | 3.550437 | TTAGGAAAGCATCTGAGCCTC | 57.450 | 47.619 | 0.00 | 0.00 | 34.23 | 4.70 |
595 | 618 | 3.303395 | GCGCTGGATCGAAATTAGGAAAG | 60.303 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
615 | 639 | 1.959985 | ACAGAGGAGATACCAGATGCG | 59.040 | 52.381 | 0.00 | 0.00 | 42.04 | 4.73 |
616 | 640 | 3.244044 | GGAACAGAGGAGATACCAGATGC | 60.244 | 52.174 | 0.00 | 0.00 | 42.04 | 3.91 |
624 | 648 | 3.245622 | TGAGTGTGGGAACAGAGGAGATA | 60.246 | 47.826 | 0.00 | 0.00 | 44.46 | 1.98 |
639 | 663 | 1.025113 | CAGAGCAGCCCATGAGTGTG | 61.025 | 60.000 | 0.00 | 0.00 | 0.00 | 3.82 |
640 | 664 | 1.298993 | CAGAGCAGCCCATGAGTGT | 59.701 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
673 | 697 | 2.639347 | TCCAATCCAAGCAGAGACAGAA | 59.361 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
674 | 698 | 2.259917 | TCCAATCCAAGCAGAGACAGA | 58.740 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
678 | 702 | 2.577563 | TCCAATCCAATCCAAGCAGAGA | 59.422 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
679 | 703 | 3.008835 | TCCAATCCAATCCAAGCAGAG | 57.991 | 47.619 | 0.00 | 0.00 | 0.00 | 3.35 |
795 | 834 | 7.175347 | AGAAAGGAAAGAATCATTAAAGGCC | 57.825 | 36.000 | 0.00 | 0.00 | 30.47 | 5.19 |
822 | 861 | 5.155278 | TCCAAATCTAAAAGCGTCAGGTA | 57.845 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
823 | 862 | 4.015872 | TCCAAATCTAAAAGCGTCAGGT | 57.984 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
824 | 863 | 4.672801 | GCTTCCAAATCTAAAAGCGTCAGG | 60.673 | 45.833 | 0.00 | 0.00 | 35.29 | 3.86 |
825 | 864 | 4.406943 | GCTTCCAAATCTAAAAGCGTCAG | 58.593 | 43.478 | 0.00 | 0.00 | 35.29 | 3.51 |
832 | 871 | 6.345096 | CCAGAAAGGCTTCCAAATCTAAAA | 57.655 | 37.500 | 0.00 | 0.00 | 31.28 | 1.52 |
854 | 893 | 4.547367 | CCGAAGATCCCCACGGCC | 62.547 | 72.222 | 0.00 | 0.00 | 38.98 | 6.13 |
857 | 896 | 3.447025 | GAGGCCGAAGATCCCCACG | 62.447 | 68.421 | 0.00 | 0.00 | 0.00 | 4.94 |
869 | 908 | 3.047877 | GGAAACCACACGAGGCCG | 61.048 | 66.667 | 0.00 | 0.00 | 42.50 | 6.13 |
873 | 912 | 3.259064 | ACGAATATGGAAACCACACGAG | 58.741 | 45.455 | 0.00 | 0.00 | 35.80 | 4.18 |
882 | 925 | 6.318628 | CAAACCGATCAAACGAATATGGAAA | 58.681 | 36.000 | 0.00 | 0.00 | 35.09 | 3.13 |
886 | 929 | 5.229921 | ACCAAACCGATCAAACGAATATG | 57.770 | 39.130 | 0.00 | 0.00 | 35.09 | 1.78 |
921 | 964 | 4.173256 | AGTTCTGAAAACCAAAAACGCAG | 58.827 | 39.130 | 0.00 | 0.00 | 0.00 | 5.18 |
939 | 982 | 5.998363 | ACCAACACCAGAAAGATAAGAGTTC | 59.002 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
941 | 984 | 5.513267 | GGACCAACACCAGAAAGATAAGAGT | 60.513 | 44.000 | 0.00 | 0.00 | 0.00 | 3.24 |
955 | 998 | 1.277273 | GTACCTACCTGGACCAACACC | 59.723 | 57.143 | 0.00 | 0.00 | 39.71 | 4.16 |
974 | 1020 | 3.003113 | GCCACGAAGCCCTACGAGT | 62.003 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
975 | 1021 | 2.202756 | GCCACGAAGCCCTACGAG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
976 | 1022 | 4.124351 | CGCCACGAAGCCCTACGA | 62.124 | 66.667 | 0.00 | 0.00 | 0.00 | 3.43 |
993 | 1039 | 4.899239 | CTCGTCTCCATGGGCGCC | 62.899 | 72.222 | 21.18 | 21.18 | 0.00 | 6.53 |
994 | 1040 | 4.899239 | CCTCGTCTCCATGGGCGC | 62.899 | 72.222 | 13.02 | 0.00 | 0.00 | 6.53 |
995 | 1041 | 2.635229 | CTTCCTCGTCTCCATGGGCG | 62.635 | 65.000 | 13.02 | 14.22 | 0.00 | 6.13 |
1029 | 1075 | 3.610791 | CTTGTCCAGACGCTCGCGA | 62.611 | 63.158 | 18.98 | 9.26 | 42.83 | 5.87 |
1050 | 1096 | 1.227205 | GAGATCAGAGCACGCCAGG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
1119 | 1165 | 1.516892 | GTCAGAGCCAGGCAGAGAG | 59.483 | 63.158 | 15.80 | 0.00 | 0.00 | 3.20 |
1128 | 1174 | 0.178992 | CCAAACCTTGGTCAGAGCCA | 60.179 | 55.000 | 0.00 | 0.00 | 45.93 | 4.75 |
1344 | 1398 | 7.272978 | GGAGGTAGTACTATTGAATCTTGCAA | 58.727 | 38.462 | 5.75 | 0.00 | 0.00 | 4.08 |
1535 | 1592 | 7.062322 | AGAGGCATATTGTGACCATGATTTTA | 58.938 | 34.615 | 0.00 | 0.00 | 36.01 | 1.52 |
1536 | 1593 | 5.895534 | AGAGGCATATTGTGACCATGATTTT | 59.104 | 36.000 | 0.00 | 0.00 | 36.01 | 1.82 |
1542 | 1599 | 7.517320 | TGTATTTAGAGGCATATTGTGACCAT | 58.483 | 34.615 | 0.00 | 0.00 | 36.01 | 3.55 |
1556 | 1613 | 8.774586 | CGATGTTATTCCCTTTGTATTTAGAGG | 58.225 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
1573 | 1630 | 7.093945 | ACAAAAATAAGAGGTGCCGATGTTATT | 60.094 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1700 | 1780 | 6.353404 | CCTAAAGAAGGCATAACCCAAAAA | 57.647 | 37.500 | 0.00 | 0.00 | 38.97 | 1.94 |
1826 | 1906 | 2.127708 | ACCTTCCACTCCTTCTGTTGT | 58.872 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
1944 | 2024 | 4.443850 | CAGTGAACTGATTACGCTATGC | 57.556 | 45.455 | 4.36 | 0.00 | 46.59 | 3.14 |
1984 | 2064 | 6.966021 | TGGTAAACTATTGCACTCTTGAAAC | 58.034 | 36.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2102 | 2196 | 3.196039 | TGGTAGCCTACAATAAGCGTTCA | 59.804 | 43.478 | 3.95 | 0.00 | 0.00 | 3.18 |
2114 | 2208 | 3.370633 | CCCTCTCCTTTTTGGTAGCCTAC | 60.371 | 52.174 | 0.00 | 0.00 | 37.07 | 3.18 |
2141 | 2235 | 0.110486 | ACCAAAACTCCATGTCCGCT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2250 | 2344 | 3.883830 | AACATTGCACACAGGTGAAAA | 57.116 | 38.095 | 6.40 | 0.00 | 45.57 | 2.29 |
2351 | 2447 | 1.537202 | CGAGGTCTGGGCAAAGAAAAG | 59.463 | 52.381 | 0.00 | 0.00 | 0.00 | 2.27 |
2356 | 2456 | 1.738099 | CGTCGAGGTCTGGGCAAAG | 60.738 | 63.158 | 0.00 | 0.00 | 0.00 | 2.77 |
2493 | 2596 | 3.243873 | CGAGCTCAAATGGTCCTGCTATA | 60.244 | 47.826 | 15.40 | 0.00 | 0.00 | 1.31 |
2498 | 2601 | 0.745845 | CCCGAGCTCAAATGGTCCTG | 60.746 | 60.000 | 15.40 | 0.00 | 0.00 | 3.86 |
2682 | 2785 | 4.002982 | AGCAATTCATAGAACTTGCACGA | 58.997 | 39.130 | 19.18 | 0.00 | 44.90 | 4.35 |
2711 | 2814 | 6.289834 | TCACCTACAAAACAGAATTACCGAA | 58.710 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2723 | 2826 | 5.001232 | TGTATCCTGCTTCACCTACAAAAC | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
2929 | 3032 | 1.208052 | AGACCTGATTCCCATGACACG | 59.792 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
3031 | 3134 | 9.559958 | AAGAATGCGAAGTTAAATGTAAAGATG | 57.440 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
3136 | 3242 | 6.827727 | AGTTAAGAAGCTGAGTTAAGAACCA | 58.172 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3170 | 3285 | 3.754965 | AGTTTGCCTACAATGAAGAGCA | 58.245 | 40.909 | 0.00 | 0.00 | 35.21 | 4.26 |
3293 | 3415 | 4.157656 | TCAGTAAAGTGGGTATTTGCATGC | 59.842 | 41.667 | 11.82 | 11.82 | 0.00 | 4.06 |
3295 | 3417 | 5.163519 | GCATCAGTAAAGTGGGTATTTGCAT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 3.96 |
3646 | 3769 | 0.601046 | TCAAGCAACCTGACTGAGCG | 60.601 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
3658 | 3781 | 5.221422 | ACCAATCCGAATCTTTTTCAAGCAA | 60.221 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
3682 | 3805 | 7.069826 | ACCAACCTGATCAAAGAAATTTCTTCA | 59.930 | 33.333 | 28.87 | 21.86 | 46.22 | 3.02 |
3749 | 3872 | 7.208064 | ACAGCTATAAAAGGGAGGTCAAATA | 57.792 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3794 | 3917 | 4.158579 | CCTTCACCCTTTCTTCCAAATAGC | 59.841 | 45.833 | 0.00 | 0.00 | 0.00 | 2.97 |
3961 | 4084 | 1.868469 | TAAACAAACGAGGACACGGG | 58.132 | 50.000 | 0.00 | 0.00 | 37.61 | 5.28 |
3971 | 4094 | 9.607285 | AGTCAATAAGCAGTAAATAAACAAACG | 57.393 | 29.630 | 0.00 | 0.00 | 0.00 | 3.60 |
4157 | 4280 | 9.979578 | AGTTATCAGTTGTTGAAATGCAAAATA | 57.020 | 25.926 | 0.00 | 0.00 | 39.77 | 1.40 |
4170 | 4293 | 6.978338 | TCTCAGTTACGAGTTATCAGTTGTT | 58.022 | 36.000 | 0.00 | 0.00 | 34.46 | 2.83 |
4185 | 4308 | 8.523658 | TGACATATGGTGCTATATCTCAGTTAC | 58.476 | 37.037 | 7.80 | 0.00 | 0.00 | 2.50 |
4197 | 4320 | 4.281941 | GGTCTCAGATGACATATGGTGCTA | 59.718 | 45.833 | 10.07 | 0.00 | 38.61 | 3.49 |
4224 | 4348 | 2.094026 | GCACAATTTCAAAGGCCTAGGG | 60.094 | 50.000 | 5.16 | 0.00 | 0.00 | 3.53 |
4279 | 4403 | 4.189639 | ACAATACTCGTCTGAAAGGGTC | 57.810 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
4357 | 4484 | 0.694196 | GGTACAGGGTACAGGCCAAA | 59.306 | 55.000 | 5.01 | 0.00 | 0.00 | 3.28 |
4358 | 4485 | 1.202769 | GGGTACAGGGTACAGGCCAA | 61.203 | 60.000 | 5.01 | 0.00 | 0.00 | 4.52 |
4359 | 4486 | 1.614226 | GGGTACAGGGTACAGGCCA | 60.614 | 63.158 | 5.01 | 0.00 | 0.00 | 5.36 |
4360 | 4487 | 1.306739 | AGGGTACAGGGTACAGGCC | 60.307 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
4362 | 4489 | 2.385803 | CTACAGGGTACAGGGTACAGG | 58.614 | 57.143 | 8.60 | 0.68 | 0.00 | 4.00 |
4363 | 4490 | 2.385803 | CCTACAGGGTACAGGGTACAG | 58.614 | 57.143 | 8.60 | 1.32 | 0.00 | 2.74 |
4364 | 4491 | 1.620524 | GCCTACAGGGTACAGGGTACA | 60.621 | 57.143 | 8.60 | 0.00 | 37.43 | 2.90 |
4366 | 4493 | 0.031817 | GGCCTACAGGGTACAGGGTA | 60.032 | 60.000 | 0.00 | 0.00 | 37.43 | 3.69 |
4367 | 4494 | 1.306739 | GGCCTACAGGGTACAGGGT | 60.307 | 63.158 | 0.00 | 0.00 | 37.43 | 4.34 |
4368 | 4495 | 1.003051 | AGGCCTACAGGGTACAGGG | 59.997 | 63.158 | 1.29 | 0.00 | 37.43 | 4.45 |
4369 | 4496 | 0.617820 | ACAGGCCTACAGGGTACAGG | 60.618 | 60.000 | 3.98 | 0.00 | 37.43 | 4.00 |
4370 | 4497 | 1.755380 | GTACAGGCCTACAGGGTACAG | 59.245 | 57.143 | 20.11 | 2.20 | 33.42 | 2.74 |
4371 | 4498 | 1.620524 | GGTACAGGCCTACAGGGTACA | 60.621 | 57.143 | 24.12 | 0.00 | 34.26 | 2.90 |
4373 | 4500 | 0.031817 | GGGTACAGGCCTACAGGGTA | 60.032 | 60.000 | 3.98 | 0.00 | 37.43 | 3.69 |
4374 | 4501 | 1.306739 | GGGTACAGGCCTACAGGGT | 60.307 | 63.158 | 3.98 | 0.20 | 37.43 | 4.34 |
4375 | 4502 | 1.003051 | AGGGTACAGGCCTACAGGG | 59.997 | 63.158 | 3.98 | 0.00 | 35.18 | 4.45 |
4376 | 4503 | 0.617820 | ACAGGGTACAGGCCTACAGG | 60.618 | 60.000 | 3.98 | 0.00 | 38.53 | 4.00 |
4377 | 4504 | 1.755380 | GTACAGGGTACAGGCCTACAG | 59.245 | 57.143 | 3.98 | 0.00 | 0.00 | 2.74 |
4379 | 4506 | 1.117994 | GGTACAGGGTACAGGCCTAC | 58.882 | 60.000 | 3.98 | 0.00 | 0.00 | 3.18 |
4381 | 4508 | 1.306739 | GGGTACAGGGTACAGGCCT | 60.307 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
4382 | 4509 | 1.306739 | AGGGTACAGGGTACAGGCC | 60.307 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
4383 | 4510 | 0.908180 | ACAGGGTACAGGGTACAGGC | 60.908 | 60.000 | 8.60 | 0.00 | 0.00 | 4.85 |
4384 | 4511 | 2.385803 | CTACAGGGTACAGGGTACAGG | 58.614 | 57.143 | 8.60 | 0.68 | 0.00 | 4.00 |
4385 | 4512 | 2.385803 | CCTACAGGGTACAGGGTACAG | 58.614 | 57.143 | 8.60 | 1.32 | 0.00 | 2.74 |
4387 | 4514 | 1.117994 | GCCTACAGGGTACAGGGTAC | 58.882 | 60.000 | 0.00 | 0.00 | 37.43 | 3.34 |
4388 | 4515 | 0.031817 | GGCCTACAGGGTACAGGGTA | 60.032 | 60.000 | 0.00 | 0.00 | 37.43 | 3.69 |
4389 | 4516 | 1.306739 | GGCCTACAGGGTACAGGGT | 60.307 | 63.158 | 0.00 | 0.00 | 37.43 | 4.34 |
4390 | 4517 | 0.620700 | AAGGCCTACAGGGTACAGGG | 60.621 | 60.000 | 5.16 | 0.00 | 37.43 | 4.45 |
4391 | 4518 | 1.286248 | AAAGGCCTACAGGGTACAGG | 58.714 | 55.000 | 5.16 | 0.00 | 37.43 | 4.00 |
4392 | 4519 | 3.081804 | CAAAAAGGCCTACAGGGTACAG | 58.918 | 50.000 | 5.16 | 0.00 | 37.43 | 2.74 |
4393 | 4520 | 2.444010 | ACAAAAAGGCCTACAGGGTACA | 59.556 | 45.455 | 5.16 | 0.00 | 37.43 | 2.90 |
4394 | 4521 | 3.150458 | ACAAAAAGGCCTACAGGGTAC | 57.850 | 47.619 | 5.16 | 0.00 | 37.43 | 3.34 |
4395 | 4522 | 3.307904 | GCTACAAAAAGGCCTACAGGGTA | 60.308 | 47.826 | 5.16 | 4.86 | 37.43 | 3.69 |
4396 | 4523 | 2.554564 | GCTACAAAAAGGCCTACAGGGT | 60.555 | 50.000 | 5.16 | 3.77 | 37.43 | 4.34 |
4397 | 4524 | 2.092323 | GCTACAAAAAGGCCTACAGGG | 58.908 | 52.381 | 5.16 | 0.00 | 35.18 | 4.45 |
4425 | 4733 | 2.159085 | CCCGCAAGTACCAAACCAAAAA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
4426 | 4734 | 1.409427 | CCCGCAAGTACCAAACCAAAA | 59.591 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
4427 | 4735 | 1.033574 | CCCGCAAGTACCAAACCAAA | 58.966 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
4428 | 4736 | 0.106619 | ACCCGCAAGTACCAAACCAA | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4429 | 4737 | 0.106619 | AACCCGCAAGTACCAAACCA | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4430 | 4738 | 0.594602 | GAACCCGCAAGTACCAAACC | 59.405 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
4435 | 4749 | 0.320697 | AGAGTGAACCCGCAAGTACC | 59.679 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
4467 | 4781 | 9.809096 | TTTTCAAGCACACATAAAAATTAGTGA | 57.191 | 25.926 | 0.00 | 0.00 | 35.97 | 3.41 |
4508 | 4822 | 3.758755 | TCTTGCAGACTGTTGATGAGT | 57.241 | 42.857 | 3.99 | 0.00 | 0.00 | 3.41 |
4514 | 4828 | 0.524862 | GCCCATCTTGCAGACTGTTG | 59.475 | 55.000 | 3.99 | 0.00 | 0.00 | 3.33 |
4551 | 4865 | 6.118170 | CCATGGCAATATGTAAGAGGATAGG | 58.882 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4601 | 4915 | 1.492133 | TAGGAGTTGGCAGCAGGCTT | 61.492 | 55.000 | 3.63 | 0.00 | 44.01 | 4.35 |
4672 | 4986 | 2.185387 | GTAGGCTCAGTAAAGTGGGGA | 58.815 | 52.381 | 0.00 | 0.00 | 0.00 | 4.81 |
4779 | 5093 | 4.806640 | TCCTTTGATTTGGAAATCCTGC | 57.193 | 40.909 | 9.16 | 0.00 | 43.19 | 4.85 |
4848 | 5162 | 6.094193 | GATGAAATCTCATGGAAAATCCCC | 57.906 | 41.667 | 0.00 | 0.00 | 42.60 | 4.81 |
4903 | 5217 | 7.654568 | ACTAATTCCATATGATTGTGTGCATG | 58.345 | 34.615 | 3.65 | 0.00 | 0.00 | 4.06 |
4907 | 5221 | 8.785946 | TGCATACTAATTCCATATGATTGTGTG | 58.214 | 33.333 | 3.65 | 7.76 | 0.00 | 3.82 |
5080 | 5394 | 7.979444 | TGAGTGATTAGGTTAAAAGTGAAGG | 57.021 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
5173 | 5487 | 1.284657 | CACTGCCGATTAGCTGTCTG | 58.715 | 55.000 | 0.00 | 0.00 | 42.27 | 3.51 |
5223 | 5537 | 9.642343 | TCATATGTACTGATGTAGACTAGGTTT | 57.358 | 33.333 | 1.90 | 0.00 | 0.00 | 3.27 |
5243 | 5557 | 8.797350 | TTTGGCCTCATCACTAATATCATATG | 57.203 | 34.615 | 3.32 | 0.00 | 0.00 | 1.78 |
5274 | 5588 | 5.953183 | TCCATGTTGTGACTTGAAATATGC | 58.047 | 37.500 | 0.00 | 0.00 | 33.91 | 3.14 |
5331 | 5647 | 2.361119 | CTCTCCCGGACATCGTTATTCA | 59.639 | 50.000 | 0.73 | 0.00 | 37.11 | 2.57 |
5496 | 5812 | 1.490490 | TCCTCAACTGCAGTCACCTTT | 59.510 | 47.619 | 21.95 | 0.00 | 0.00 | 3.11 |
5506 | 5822 | 1.156736 | TTAGCGCTTTCCTCAACTGC | 58.843 | 50.000 | 18.68 | 0.00 | 0.00 | 4.40 |
5572 | 5888 | 4.467795 | ACTGCATGGTGTGAGATTAGTAGT | 59.532 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
5573 | 5889 | 4.807834 | CACTGCATGGTGTGAGATTAGTAG | 59.192 | 45.833 | 0.00 | 0.00 | 36.38 | 2.57 |
5574 | 5890 | 4.466015 | TCACTGCATGGTGTGAGATTAGTA | 59.534 | 41.667 | 2.60 | 0.00 | 38.15 | 1.82 |
5610 | 5926 | 5.543507 | AAGATGTGTTCTGTTCACTCTCT | 57.456 | 39.130 | 0.00 | 0.00 | 36.83 | 3.10 |
5638 | 5954 | 1.334869 | GCCGGTTGCAAGATTATCCAG | 59.665 | 52.381 | 1.90 | 0.00 | 40.77 | 3.86 |
5721 | 6037 | 3.133691 | CTGTGCTTGCTTGACTGTTCTA | 58.866 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
5759 | 6075 | 2.101415 | TGCACCTCAGGACTAATCATCG | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
5761 | 6077 | 3.378512 | TCTGCACCTCAGGACTAATCAT | 58.621 | 45.455 | 0.00 | 0.00 | 43.06 | 2.45 |
5892 | 6208 | 5.769662 | TGAATTTCTTGTACTGATGGCACTT | 59.230 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5974 | 6290 | 2.912295 | TGGACCTTGAATCATGAGGTGA | 59.088 | 45.455 | 11.07 | 0.00 | 43.59 | 4.02 |
6014 | 6330 | 8.085296 | ACTGAAACACAAATTTGACAAACAGTA | 58.915 | 29.630 | 24.64 | 2.22 | 33.96 | 2.74 |
6016 | 6332 | 7.350110 | ACTGAAACACAAATTTGACAAACAG | 57.650 | 32.000 | 24.64 | 23.63 | 0.00 | 3.16 |
6024 | 6340 | 6.534436 | TGACCATCAACTGAAACACAAATTTG | 59.466 | 34.615 | 16.67 | 16.67 | 0.00 | 2.32 |
6090 | 6408 | 4.855715 | TGCCGGATCTCTCTACATAAAG | 57.144 | 45.455 | 5.05 | 0.00 | 0.00 | 1.85 |
6097 | 6415 | 5.871396 | AATAAGTTTGCCGGATCTCTCTA | 57.129 | 39.130 | 5.05 | 0.00 | 0.00 | 2.43 |
6109 | 6427 | 4.739195 | TGTCGGGCATTAAATAAGTTTGC | 58.261 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
6121 | 6439 | 1.002134 | CACCTCCTTGTCGGGCATT | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 3.56 |
6122 | 6440 | 2.671070 | CACCTCCTTGTCGGGCAT | 59.329 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
6130 | 6448 | 3.114616 | CTGTCGCGCACCTCCTTG | 61.115 | 66.667 | 8.75 | 0.00 | 0.00 | 3.61 |
6183 | 6501 | 3.131396 | GTTATGGTAGAAGCGGTCATGG | 58.869 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
6297 | 6615 | 2.291217 | GGTCTCTTGGGCTCTTTTCCAT | 60.291 | 50.000 | 0.00 | 0.00 | 32.48 | 3.41 |
6301 | 6619 | 3.117512 | TCTTTGGTCTCTTGGGCTCTTTT | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
6362 | 6680 | 2.287668 | CGATGGGTTCTCGTCATCCTAC | 60.288 | 54.545 | 0.00 | 0.00 | 35.22 | 3.18 |
6382 | 6700 | 1.410004 | TAACCATGAGAGCCCCTACG | 58.590 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6422 | 6740 | 6.197468 | GTGTAGCTCGTCTATTTTCTGATGTC | 59.803 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
6472 | 6790 | 0.962356 | CAAGCTGCCTCCGGAATTGT | 60.962 | 55.000 | 5.23 | 0.00 | 0.00 | 2.71 |
6616 | 6934 | 5.495640 | CTTCTCTCTCATGCCCTAAAAACT | 58.504 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
6694 | 7014 | 5.760743 | AGTTGTGGAGTAAAAGAGAAGAAGC | 59.239 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
6954 | 7994 | 2.679336 | GGATGGCAATGAAAACAATGGC | 59.321 | 45.455 | 0.00 | 0.00 | 38.68 | 4.40 |
6970 | 8010 | 0.688418 | ATGGGTGGTGCAATGGATGG | 60.688 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6988 | 8040 | 3.349304 | TGGTGCCATGGGAGCCAT | 61.349 | 61.111 | 29.60 | 0.00 | 46.37 | 4.40 |
7043 | 8097 | 1.136828 | GGTGGTATGGGAGGCATACA | 58.863 | 55.000 | 0.00 | 0.00 | 37.28 | 2.29 |
7045 | 8099 | 3.181329 | CATAGGTGGTATGGGAGGCATA | 58.819 | 50.000 | 0.00 | 0.00 | 35.69 | 3.14 |
7069 | 8123 | 3.017581 | ATGGGAGGACTGGGTGGC | 61.018 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
7177 | 8231 | 5.594317 | AGGCAAAAACATACTTTGAGAGTGT | 59.406 | 36.000 | 0.00 | 0.00 | 39.48 | 3.55 |
7193 | 8247 | 4.037923 | GTGGTCTTGATGAGAAGGCAAAAA | 59.962 | 41.667 | 0.00 | 0.00 | 35.79 | 1.94 |
7265 | 8319 | 1.342374 | GGAAGGTGGCCATGGAAGAAT | 60.342 | 52.381 | 18.40 | 0.00 | 0.00 | 2.40 |
7297 | 8351 | 1.183549 | GTAACCGAGGAGAAGGCAGA | 58.816 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.