Multiple sequence alignment - TraesCS4A01G276700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G276700 chr4A 100.000 4058 0 0 501 4558 584940011 584935954 0.000000e+00 7494
1 TraesCS4A01G276700 chr4A 100.000 118 0 0 1 118 584940511 584940394 7.680000e-53 219
2 TraesCS4A01G276700 chr4D 92.855 3989 125 49 501 4380 15710096 15714033 0.000000e+00 5640
3 TraesCS4A01G276700 chr4B 93.384 3703 127 62 501 4128 26791437 26795096 0.000000e+00 5373
4 TraesCS4A01G276700 chr4B 95.312 64 3 0 4120 4183 26795115 26795178 8.070000e-18 102
5 TraesCS4A01G276700 chr2D 76.842 380 77 9 1769 2141 161900586 161900961 2.150000e-48 204
6 TraesCS4A01G276700 chr2A 76.253 379 79 9 1769 2140 172537716 172538090 1.670000e-44 191
7 TraesCS4A01G276700 chr2B 75.989 379 82 7 1769 2141 221087804 221088179 2.170000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G276700 chr4A 584935954 584940511 4557 True 3856.5 7494 100.000 1 4558 2 chr4A.!!$R1 4557
1 TraesCS4A01G276700 chr4D 15710096 15714033 3937 False 5640.0 5640 92.855 501 4380 1 chr4D.!!$F1 3879
2 TraesCS4A01G276700 chr4B 26791437 26795178 3741 False 2737.5 5373 94.348 501 4183 2 chr4B.!!$F1 3682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.182537 AACACTAGGCAGCACAACCA 59.817 50.000 0.0 0.0 0.00 3.67 F
107 108 1.317613 CACTAGGCAGCACAACCAAA 58.682 50.000 0.0 0.0 0.00 3.28 F
607 611 1.613332 GCCCCCAAATCTTTGCCCT 60.613 57.895 0.0 0.0 36.86 5.19 F
1977 2049 0.598065 GTTGTGTTCCATGCCCTGAC 59.402 55.000 0.0 0.0 0.00 3.51 F
2394 2466 0.457681 GCAGACTCCGAAGCTCACTC 60.458 60.000 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1044 1101 0.108804 GGATCGAAGCGACTGAACCA 60.109 55.0 0.0 0.0 39.18 3.67 R
1065 1122 0.371645 CGTTCATCTTCTTGGCTCGC 59.628 55.0 0.0 0.0 0.00 5.03 R
2328 2400 0.096454 GTAGCGTCGGAACATTTGGC 59.904 55.0 0.0 0.0 0.00 4.52 R
2784 2856 1.078759 GTGACCCAGATTCGACGCAG 61.079 60.0 0.0 0.0 0.00 5.18 R
4103 4243 0.114168 CCACCACCCCTGAAATTCCA 59.886 55.0 0.0 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.532697 CATAAACAAAGCAAATGATGTTTTAGC 57.467 29.630 7.88 0.00 41.75 3.09
30 31 7.790823 AAACAAAGCAAATGATGTTTTAGCT 57.209 28.000 0.00 0.00 41.75 3.32
31 32 8.885494 AAACAAAGCAAATGATGTTTTAGCTA 57.115 26.923 0.00 0.00 41.75 3.32
32 33 8.885494 AACAAAGCAAATGATGTTTTAGCTAA 57.115 26.923 0.86 0.86 40.04 3.09
33 34 8.524870 ACAAAGCAAATGATGTTTTAGCTAAG 57.475 30.769 6.24 0.00 40.04 2.18
34 35 8.359642 ACAAAGCAAATGATGTTTTAGCTAAGA 58.640 29.630 6.24 0.00 40.04 2.10
35 36 8.642020 CAAAGCAAATGATGTTTTAGCTAAGAC 58.358 33.333 17.92 17.92 40.04 3.01
36 37 7.452880 AGCAAATGATGTTTTAGCTAAGACA 57.547 32.000 26.54 26.54 35.23 3.41
37 38 8.059798 AGCAAATGATGTTTTAGCTAAGACAT 57.940 30.769 31.83 31.83 41.79 3.06
38 39 7.972277 AGCAAATGATGTTTTAGCTAAGACATG 59.028 33.333 34.77 25.60 39.98 3.21
39 40 7.970061 GCAAATGATGTTTTAGCTAAGACATGA 59.030 33.333 34.77 29.65 39.98 3.07
46 47 9.618890 ATGTTTTAGCTAAGACATGATATGTGT 57.381 29.630 31.18 12.97 45.03 3.72
47 48 9.448438 TGTTTTAGCTAAGACATGATATGTGTT 57.552 29.630 22.23 8.95 46.74 3.32
52 53 7.253422 AGCTAAGACATGATATGTGTTTTTGC 58.747 34.615 9.20 14.01 43.27 3.68
53 54 7.121759 AGCTAAGACATGATATGTGTTTTTGCT 59.878 33.333 16.55 16.55 43.27 3.91
54 55 8.397906 GCTAAGACATGATATGTGTTTTTGCTA 58.602 33.333 9.20 0.00 43.27 3.49
57 58 8.970691 AGACATGATATGTGTTTTTGCTAAAC 57.029 30.769 0.00 7.73 45.03 2.01
58 59 8.028938 AGACATGATATGTGTTTTTGCTAAACC 58.971 33.333 0.00 0.00 45.03 3.27
59 60 7.665690 ACATGATATGTGTTTTTGCTAAACCA 58.334 30.769 0.00 0.35 43.01 3.67
60 61 8.147058 ACATGATATGTGTTTTTGCTAAACCAA 58.853 29.630 0.00 2.48 43.01 3.67
61 62 8.649841 CATGATATGTGTTTTTGCTAAACCAAG 58.350 33.333 10.96 0.00 0.00 3.61
62 63 6.644592 TGATATGTGTTTTTGCTAAACCAAGC 59.355 34.615 10.96 0.00 43.08 4.01
74 75 5.928153 GCTAAACCAAGCAACTACTACTTG 58.072 41.667 0.00 0.00 42.30 3.16
75 76 5.469084 GCTAAACCAAGCAACTACTACTTGT 59.531 40.000 0.00 0.00 42.30 3.16
76 77 5.751243 AAACCAAGCAACTACTACTTGTG 57.249 39.130 0.00 0.00 39.30 3.33
77 78 3.139077 ACCAAGCAACTACTACTTGTGC 58.861 45.455 0.00 0.00 39.30 4.57
78 79 3.138304 CCAAGCAACTACTACTTGTGCA 58.862 45.455 0.00 0.00 39.30 4.57
79 80 3.058914 CCAAGCAACTACTACTTGTGCAC 60.059 47.826 10.75 10.75 39.30 4.57
80 81 3.469008 AGCAACTACTACTTGTGCACA 57.531 42.857 17.42 17.42 0.00 4.57
81 82 3.131396 AGCAACTACTACTTGTGCACAC 58.869 45.455 21.56 3.05 0.00 3.82
82 83 2.869801 GCAACTACTACTTGTGCACACA 59.130 45.455 21.56 10.18 39.98 3.72
94 95 1.867233 GTGCACACACTCAACACTAGG 59.133 52.381 13.17 0.00 43.85 3.02
95 96 0.868406 GCACACACTCAACACTAGGC 59.132 55.000 0.00 0.00 0.00 3.93
96 97 1.810031 GCACACACTCAACACTAGGCA 60.810 52.381 0.00 0.00 0.00 4.75
97 98 2.138320 CACACACTCAACACTAGGCAG 58.862 52.381 0.00 0.00 0.00 4.85
98 99 1.151668 CACACTCAACACTAGGCAGC 58.848 55.000 0.00 0.00 0.00 5.25
99 100 0.758734 ACACTCAACACTAGGCAGCA 59.241 50.000 0.00 0.00 0.00 4.41
100 101 1.151668 CACTCAACACTAGGCAGCAC 58.848 55.000 0.00 0.00 0.00 4.40
101 102 0.758734 ACTCAACACTAGGCAGCACA 59.241 50.000 0.00 0.00 0.00 4.57
102 103 1.140852 ACTCAACACTAGGCAGCACAA 59.859 47.619 0.00 0.00 0.00 3.33
103 104 1.532868 CTCAACACTAGGCAGCACAAC 59.467 52.381 0.00 0.00 0.00 3.32
104 105 0.593128 CAACACTAGGCAGCACAACC 59.407 55.000 0.00 0.00 0.00 3.77
105 106 0.182537 AACACTAGGCAGCACAACCA 59.817 50.000 0.00 0.00 0.00 3.67
106 107 0.182537 ACACTAGGCAGCACAACCAA 59.817 50.000 0.00 0.00 0.00 3.67
107 108 1.317613 CACTAGGCAGCACAACCAAA 58.682 50.000 0.00 0.00 0.00 3.28
108 109 1.888512 CACTAGGCAGCACAACCAAAT 59.111 47.619 0.00 0.00 0.00 2.32
109 110 2.297033 CACTAGGCAGCACAACCAAATT 59.703 45.455 0.00 0.00 0.00 1.82
110 111 3.505680 CACTAGGCAGCACAACCAAATTA 59.494 43.478 0.00 0.00 0.00 1.40
111 112 4.158394 CACTAGGCAGCACAACCAAATTAT 59.842 41.667 0.00 0.00 0.00 1.28
112 113 3.874392 AGGCAGCACAACCAAATTATC 57.126 42.857 0.00 0.00 0.00 1.75
113 114 2.497273 AGGCAGCACAACCAAATTATCC 59.503 45.455 0.00 0.00 0.00 2.59
114 115 2.233431 GGCAGCACAACCAAATTATCCA 59.767 45.455 0.00 0.00 0.00 3.41
115 116 3.118665 GGCAGCACAACCAAATTATCCAT 60.119 43.478 0.00 0.00 0.00 3.41
116 117 4.506758 GCAGCACAACCAAATTATCCATT 58.493 39.130 0.00 0.00 0.00 3.16
117 118 4.937015 GCAGCACAACCAAATTATCCATTT 59.063 37.500 0.00 0.00 35.24 2.32
607 611 1.613332 GCCCCCAAATCTTTGCCCT 60.613 57.895 0.00 0.00 36.86 5.19
646 650 2.281484 CTTCCACCCACCACCACG 60.281 66.667 0.00 0.00 0.00 4.94
671 701 2.110006 GCTCTCCCCAGATTCGGC 59.890 66.667 0.00 0.00 0.00 5.54
799 838 4.824515 CGTCCCCCTCTCCTCGCT 62.825 72.222 0.00 0.00 0.00 4.93
883 940 3.769739 AAGATTGGTTTTTGCTTCCCC 57.230 42.857 0.00 0.00 0.00 4.81
1065 1122 1.138883 TTCAGTCGCTTCGATCCGG 59.861 57.895 0.00 0.00 38.42 5.14
1578 1650 1.598676 CCGCCAAAGATGATTGATGCG 60.599 52.381 0.00 0.00 39.26 4.73
1644 1716 4.699522 GTGCTCCGGGTGGTGACC 62.700 72.222 0.00 0.00 42.27 4.02
1758 1830 4.329545 GACCTGCCGAGGGTTGCA 62.330 66.667 0.00 0.00 44.84 4.08
1977 2049 0.598065 GTTGTGTTCCATGCCCTGAC 59.402 55.000 0.00 0.00 0.00 3.51
1986 2058 2.089980 CCATGCCCTGACTTCAGAAAG 58.910 52.381 7.87 0.00 46.59 2.62
2115 2187 0.949105 ATCGCCGCGTCTGTTTCTTT 60.949 50.000 13.39 0.00 0.00 2.52
2166 2238 1.892819 ATGTCTCCACTGGGTCTGCG 61.893 60.000 0.00 0.00 34.93 5.18
2193 2265 2.300967 CCCTAGGGCCTCAGCAACA 61.301 63.158 16.90 0.00 42.56 3.33
2328 2400 3.263859 TTCTCTGGGCTGGCAGCAG 62.264 63.158 37.49 27.50 44.75 4.24
2394 2466 0.457681 GCAGACTCCGAAGCTCACTC 60.458 60.000 0.00 0.00 0.00 3.51
2413 2485 2.557056 CTCAATGCAAGGGATATGCCTG 59.443 50.000 17.57 11.80 43.16 4.85
2559 2631 2.037511 CCTGGATGATCTCTTCTCTGCC 59.962 54.545 0.00 0.00 0.00 4.85
2598 2670 3.308053 CGAGGTACAACAATGCTGATCAG 59.692 47.826 18.84 18.84 0.00 2.90
2640 2712 3.471680 CCAGAAGGCTGCTATCCTTAAC 58.528 50.000 0.00 0.00 43.54 2.01
2691 2763 1.806542 CCAATCAACACAGGGTTCTCG 59.193 52.381 0.00 0.00 37.72 4.04
2736 2808 0.462581 TGCATTCACGCTCATCCCTC 60.463 55.000 0.00 0.00 0.00 4.30
2802 2874 1.215382 CTGCGTCGAATCTGGGTCA 59.785 57.895 0.00 0.00 0.00 4.02
2805 2877 1.516386 CGTCGAATCTGGGTCACCG 60.516 63.158 0.00 0.00 40.75 4.94
3105 3177 1.893808 CTGGGTGCACACACTGGTC 60.894 63.158 20.21 0.00 46.57 4.02
3132 3204 1.805869 CTCCACCAGAGAAGCAAGTG 58.194 55.000 0.00 0.00 46.50 3.16
3208 3280 3.014623 GGTGTAAGTAATGGTGAAGGCC 58.985 50.000 0.00 0.00 0.00 5.19
3249 3321 3.853330 CGACATGACCAAGCCGCG 61.853 66.667 0.00 0.00 0.00 6.46
3327 3399 3.067106 AGCAACATAGACGAACAACCAG 58.933 45.455 0.00 0.00 0.00 4.00
3338 3410 4.760047 CAACCAGACGAGCCCGGG 62.760 72.222 19.09 19.09 40.78 5.73
3427 3500 0.320683 TCATTGCGGTGGTCAGTCAG 60.321 55.000 0.00 0.00 0.00 3.51
3550 3626 5.576563 TTGAGTTTCCATTTCCAGTAGGA 57.423 39.130 0.00 0.00 43.93 2.94
3551 3627 5.165961 TGAGTTTCCATTTCCAGTAGGAG 57.834 43.478 0.00 0.00 46.74 3.69
3552 3628 4.019321 TGAGTTTCCATTTCCAGTAGGAGG 60.019 45.833 0.00 0.00 46.74 4.30
3577 3654 9.948964 GGTTAAATTAAAGAGTGGAGTTACCTA 57.051 33.333 0.00 0.00 39.86 3.08
3579 3656 9.948964 TTAAATTAAAGAGTGGAGTTACCTACC 57.051 33.333 0.00 0.00 39.86 3.18
3580 3657 7.809880 AATTAAAGAGTGGAGTTACCTACCT 57.190 36.000 0.00 0.00 39.86 3.08
3637 3714 0.392193 CCGGCAGCTTCAGTTCATCT 60.392 55.000 0.00 0.00 0.00 2.90
3638 3715 1.005340 CGGCAGCTTCAGTTCATCTC 58.995 55.000 0.00 0.00 0.00 2.75
3639 3716 1.673923 CGGCAGCTTCAGTTCATCTCA 60.674 52.381 0.00 0.00 0.00 3.27
3640 3717 2.641305 GGCAGCTTCAGTTCATCTCAT 58.359 47.619 0.00 0.00 0.00 2.90
3641 3718 2.613133 GGCAGCTTCAGTTCATCTCATC 59.387 50.000 0.00 0.00 0.00 2.92
3647 3724 3.538634 TCAGTTCATCTCATCAGCCAG 57.461 47.619 0.00 0.00 0.00 4.85
3738 3817 2.100418 GCCATGCCAGAATTCTTTCCTC 59.900 50.000 4.86 0.00 31.84 3.71
3808 3889 6.573434 TGACATGGATACTTGATGTACTGAC 58.427 40.000 0.00 0.00 44.16 3.51
3846 3928 1.609061 CCGGGCATGCTATAGTTCCAG 60.609 57.143 18.92 4.96 0.00 3.86
3868 3950 7.125053 TCCAGGTCCCCAAATATGTTTTAATTC 59.875 37.037 0.00 0.00 0.00 2.17
3922 4009 4.762289 TTTACACCATGGCCTTGTTTTT 57.238 36.364 13.04 1.95 0.00 1.94
3935 4022 4.202151 GCCTTGTTTTTGGTCAGAAGATGT 60.202 41.667 0.00 0.00 0.00 3.06
3970 4057 8.242053 CCTCTATTGTTCATGGATGATAATTGC 58.758 37.037 0.00 0.00 36.56 3.56
3994 4093 9.800433 TGCAATGATAATAATGTGAAATCGTTT 57.200 25.926 0.00 0.00 0.00 3.60
4032 4150 3.308323 GCTGTCGAATCTTGGTTCATCTC 59.692 47.826 0.00 0.00 0.00 2.75
4063 4200 3.885297 CTGAATTTCTTGTGACTGGTGGT 59.115 43.478 0.00 0.00 0.00 4.16
4080 4218 0.893727 GGTCGATGCAACCAGGGTTT 60.894 55.000 0.00 0.00 36.00 3.27
4100 4240 6.713450 GGGTTTTGTTTCTTGACTGGTAGATA 59.287 38.462 0.00 0.00 0.00 1.98
4101 4241 7.094762 GGGTTTTGTTTCTTGACTGGTAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
4102 4242 7.660208 GGTTTTGTTTCTTGACTGGTAGATAGA 59.340 37.037 0.00 0.00 0.00 1.98
4103 4243 9.220767 GTTTTGTTTCTTGACTGGTAGATAGAT 57.779 33.333 0.00 0.00 0.00 1.98
4116 4256 5.310594 TGGTAGATAGATGGAATTTCAGGGG 59.689 44.000 0.00 0.00 0.00 4.79
4118 4258 5.316158 AGATAGATGGAATTTCAGGGGTG 57.684 43.478 0.00 0.00 0.00 4.61
4177 4344 1.154016 CGCCGACTAGTCAGTGTGG 60.154 63.158 22.37 15.19 34.21 4.17
4272 4439 5.969435 CGTAGCCGCGATATGATTCTTATTA 59.031 40.000 8.23 0.00 0.00 0.98
4273 4440 6.637254 CGTAGCCGCGATATGATTCTTATTAT 59.363 38.462 8.23 0.00 0.00 1.28
4274 4441 7.167635 CGTAGCCGCGATATGATTCTTATTATT 59.832 37.037 8.23 0.00 0.00 1.40
4294 4461 1.476085 TGCACCAGTTTTTGACAGTGG 59.524 47.619 0.00 0.00 36.10 4.00
4304 4471 1.122632 TTGACAGTGGGGCGGTTCTA 61.123 55.000 0.00 0.00 0.00 2.10
4324 4491 9.832445 GGTTCTAGATGTAGAATATTGTTTGGA 57.168 33.333 14.78 0.00 45.16 3.53
4327 4494 9.529325 TCTAGATGTAGAATATTGTTTGGAACG 57.471 33.333 0.00 0.00 31.94 3.95
4328 4495 9.314321 CTAGATGTAGAATATTGTTTGGAACGT 57.686 33.333 0.00 0.00 0.00 3.99
4330 4497 9.095065 AGATGTAGAATATTGTTTGGAACGTAC 57.905 33.333 0.00 0.00 0.00 3.67
4331 4498 9.095065 GATGTAGAATATTGTTTGGAACGTACT 57.905 33.333 0.00 0.00 0.00 2.73
4332 4499 8.836268 TGTAGAATATTGTTTGGAACGTACTT 57.164 30.769 0.00 0.00 0.00 2.24
4333 4500 9.275398 TGTAGAATATTGTTTGGAACGTACTTT 57.725 29.630 0.00 0.00 0.00 2.66
4342 4509 5.744666 TTGGAACGTACTTTTTCTCCAAG 57.255 39.130 9.45 0.00 37.88 3.61
4345 4512 4.383173 GAACGTACTTTTTCTCCAAGGGA 58.617 43.478 0.00 0.00 0.00 4.20
4368 4535 0.865769 CACCAAAACGAACCTCCTCG 59.134 55.000 0.00 0.00 44.50 4.63
4376 4543 0.525668 CGAACCTCCTCGAATGTCCG 60.526 60.000 0.00 0.00 41.44 4.79
4380 4547 0.032678 CCTCCTCGAATGTCCGGATG 59.967 60.000 7.81 0.00 0.00 3.51
4381 4548 0.747255 CTCCTCGAATGTCCGGATGT 59.253 55.000 7.81 0.00 0.00 3.06
4382 4549 0.459899 TCCTCGAATGTCCGGATGTG 59.540 55.000 7.81 0.00 0.00 3.21
4383 4550 0.175760 CCTCGAATGTCCGGATGTGT 59.824 55.000 7.81 0.00 0.00 3.72
4384 4551 1.405526 CCTCGAATGTCCGGATGTGTT 60.406 52.381 7.81 0.00 0.00 3.32
4385 4552 2.346803 CTCGAATGTCCGGATGTGTTT 58.653 47.619 7.81 0.00 0.00 2.83
4386 4553 2.073056 TCGAATGTCCGGATGTGTTTG 58.927 47.619 7.81 4.78 0.00 2.93
4387 4554 1.465689 CGAATGTCCGGATGTGTTTGC 60.466 52.381 7.81 0.00 0.00 3.68
4388 4555 0.521291 AATGTCCGGATGTGTTTGCG 59.479 50.000 7.81 0.00 0.00 4.85
4392 4559 3.649096 CGGATGTGTTTGCGGACA 58.351 55.556 0.00 0.00 0.00 4.02
4393 4560 1.497278 CGGATGTGTTTGCGGACAG 59.503 57.895 0.00 0.00 0.00 3.51
4394 4561 1.227999 CGGATGTGTTTGCGGACAGT 61.228 55.000 0.00 0.00 0.00 3.55
4395 4562 0.238289 GGATGTGTTTGCGGACAGTG 59.762 55.000 0.00 0.00 0.00 3.66
4396 4563 1.225855 GATGTGTTTGCGGACAGTGA 58.774 50.000 0.00 0.00 0.00 3.41
4397 4564 1.806542 GATGTGTTTGCGGACAGTGAT 59.193 47.619 0.00 0.00 0.00 3.06
4398 4565 0.943673 TGTGTTTGCGGACAGTGATG 59.056 50.000 0.00 0.00 0.00 3.07
4399 4566 0.238289 GTGTTTGCGGACAGTGATGG 59.762 55.000 0.00 0.00 0.00 3.51
4400 4567 0.179032 TGTTTGCGGACAGTGATGGT 60.179 50.000 0.00 0.00 0.00 3.55
4401 4568 0.238289 GTTTGCGGACAGTGATGGTG 59.762 55.000 0.00 0.00 0.00 4.17
4402 4569 0.888736 TTTGCGGACAGTGATGGTGG 60.889 55.000 0.00 0.00 0.00 4.61
4403 4570 2.050836 TTGCGGACAGTGATGGTGGT 62.051 55.000 0.00 0.00 0.00 4.16
4404 4571 2.034879 GCGGACAGTGATGGTGGTG 61.035 63.158 0.00 0.00 0.00 4.17
4405 4572 2.034879 CGGACAGTGATGGTGGTGC 61.035 63.158 0.00 0.00 0.00 5.01
4406 4573 1.675641 GGACAGTGATGGTGGTGCC 60.676 63.158 0.00 0.00 37.90 5.01
4407 4574 2.032528 ACAGTGATGGTGGTGCCG 59.967 61.111 0.00 0.00 41.21 5.69
4408 4575 2.747460 CAGTGATGGTGGTGCCGG 60.747 66.667 0.00 0.00 41.21 6.13
4409 4576 4.722700 AGTGATGGTGGTGCCGGC 62.723 66.667 22.73 22.73 41.21 6.13
4412 4579 4.740822 GATGGTGGTGCCGGCCTT 62.741 66.667 26.77 5.79 41.21 4.35
4413 4580 4.740822 ATGGTGGTGCCGGCCTTC 62.741 66.667 26.77 14.39 41.21 3.46
4416 4583 4.966787 GTGGTGCCGGCCTTCCAA 62.967 66.667 28.07 14.93 0.00 3.53
4417 4584 4.966787 TGGTGCCGGCCTTCCAAC 62.967 66.667 26.77 14.37 0.00 3.77
4418 4585 4.966787 GGTGCCGGCCTTCCAACA 62.967 66.667 26.77 0.00 0.00 3.33
4419 4586 2.909965 GTGCCGGCCTTCCAACAA 60.910 61.111 26.77 0.00 0.00 2.83
4420 4587 2.123683 TGCCGGCCTTCCAACAAA 60.124 55.556 26.77 0.00 0.00 2.83
4421 4588 1.532794 TGCCGGCCTTCCAACAAAT 60.533 52.632 26.77 0.00 0.00 2.32
4422 4589 0.251386 TGCCGGCCTTCCAACAAATA 60.251 50.000 26.77 0.00 0.00 1.40
4423 4590 1.111277 GCCGGCCTTCCAACAAATAT 58.889 50.000 18.11 0.00 0.00 1.28
4424 4591 1.067060 GCCGGCCTTCCAACAAATATC 59.933 52.381 18.11 0.00 0.00 1.63
4425 4592 1.681264 CCGGCCTTCCAACAAATATCC 59.319 52.381 0.00 0.00 0.00 2.59
4426 4593 1.333619 CGGCCTTCCAACAAATATCCG 59.666 52.381 0.00 0.00 0.00 4.18
4427 4594 2.375146 GGCCTTCCAACAAATATCCGT 58.625 47.619 0.00 0.00 0.00 4.69
4428 4595 2.357952 GGCCTTCCAACAAATATCCGTC 59.642 50.000 0.00 0.00 0.00 4.79
4429 4596 2.357952 GCCTTCCAACAAATATCCGTCC 59.642 50.000 0.00 0.00 0.00 4.79
4430 4597 2.949644 CCTTCCAACAAATATCCGTCCC 59.050 50.000 0.00 0.00 0.00 4.46
4431 4598 3.371595 CCTTCCAACAAATATCCGTCCCT 60.372 47.826 0.00 0.00 0.00 4.20
4432 4599 4.270008 CTTCCAACAAATATCCGTCCCTT 58.730 43.478 0.00 0.00 0.00 3.95
4433 4600 3.616219 TCCAACAAATATCCGTCCCTTG 58.384 45.455 0.00 0.00 0.00 3.61
4434 4601 3.009695 TCCAACAAATATCCGTCCCTTGT 59.990 43.478 0.00 0.00 0.00 3.16
4435 4602 3.377172 CCAACAAATATCCGTCCCTTGTC 59.623 47.826 0.00 0.00 30.16 3.18
4436 4603 3.277142 ACAAATATCCGTCCCTTGTCC 57.723 47.619 0.00 0.00 0.00 4.02
4437 4604 2.210116 CAAATATCCGTCCCTTGTCCG 58.790 52.381 0.00 0.00 0.00 4.79
4438 4605 1.784358 AATATCCGTCCCTTGTCCGA 58.216 50.000 0.00 0.00 0.00 4.55
4439 4606 2.011122 ATATCCGTCCCTTGTCCGAT 57.989 50.000 0.00 0.00 0.00 4.18
4440 4607 1.037493 TATCCGTCCCTTGTCCGATG 58.963 55.000 0.00 0.00 0.00 3.84
4441 4608 2.311688 ATCCGTCCCTTGTCCGATGC 62.312 60.000 0.00 0.00 0.00 3.91
4442 4609 2.264480 CGTCCCTTGTCCGATGCA 59.736 61.111 0.00 0.00 0.00 3.96
4443 4610 1.811266 CGTCCCTTGTCCGATGCAG 60.811 63.158 0.00 0.00 0.00 4.41
4444 4611 1.596934 GTCCCTTGTCCGATGCAGA 59.403 57.895 0.00 0.00 0.00 4.26
4445 4612 0.460987 GTCCCTTGTCCGATGCAGAG 60.461 60.000 0.00 0.00 0.00 3.35
4446 4613 0.614697 TCCCTTGTCCGATGCAGAGA 60.615 55.000 0.00 0.00 0.00 3.10
4447 4614 0.467384 CCCTTGTCCGATGCAGAGAT 59.533 55.000 0.00 0.00 0.00 2.75
4448 4615 1.539929 CCCTTGTCCGATGCAGAGATC 60.540 57.143 0.00 0.00 0.00 2.75
4449 4616 1.137675 CCTTGTCCGATGCAGAGATCA 59.862 52.381 0.00 0.00 0.00 2.92
4450 4617 2.200067 CTTGTCCGATGCAGAGATCAC 58.800 52.381 0.00 0.00 0.00 3.06
4451 4618 1.185315 TGTCCGATGCAGAGATCACA 58.815 50.000 0.00 0.00 0.00 3.58
4452 4619 1.135721 TGTCCGATGCAGAGATCACAG 59.864 52.381 0.00 0.00 0.00 3.66
4453 4620 1.406898 GTCCGATGCAGAGATCACAGA 59.593 52.381 0.00 0.00 0.00 3.41
4454 4621 2.102578 TCCGATGCAGAGATCACAGAA 58.897 47.619 0.00 0.00 0.00 3.02
4455 4622 2.497273 TCCGATGCAGAGATCACAGAAA 59.503 45.455 0.00 0.00 0.00 2.52
4456 4623 3.055891 TCCGATGCAGAGATCACAGAAAA 60.056 43.478 0.00 0.00 0.00 2.29
4457 4624 3.309138 CCGATGCAGAGATCACAGAAAAG 59.691 47.826 0.00 0.00 0.00 2.27
4458 4625 4.179298 CGATGCAGAGATCACAGAAAAGA 58.821 43.478 0.00 0.00 0.00 2.52
4459 4626 4.628766 CGATGCAGAGATCACAGAAAAGAA 59.371 41.667 0.00 0.00 0.00 2.52
4460 4627 5.121298 CGATGCAGAGATCACAGAAAAGAAA 59.879 40.000 0.00 0.00 0.00 2.52
4461 4628 5.936686 TGCAGAGATCACAGAAAAGAAAG 57.063 39.130 0.00 0.00 0.00 2.62
4462 4629 5.614308 TGCAGAGATCACAGAAAAGAAAGA 58.386 37.500 0.00 0.00 0.00 2.52
4463 4630 6.236409 TGCAGAGATCACAGAAAAGAAAGAT 58.764 36.000 0.00 0.00 0.00 2.40
4464 4631 6.148976 TGCAGAGATCACAGAAAAGAAAGATG 59.851 38.462 0.00 0.00 0.00 2.90
4465 4632 6.403418 GCAGAGATCACAGAAAAGAAAGATGG 60.403 42.308 0.00 0.00 0.00 3.51
4466 4633 6.877855 CAGAGATCACAGAAAAGAAAGATGGA 59.122 38.462 0.00 0.00 0.00 3.41
4467 4634 7.389884 CAGAGATCACAGAAAAGAAAGATGGAA 59.610 37.037 0.00 0.00 0.00 3.53
4468 4635 7.941238 AGAGATCACAGAAAAGAAAGATGGAAA 59.059 33.333 0.00 0.00 0.00 3.13
4469 4636 8.469309 AGATCACAGAAAAGAAAGATGGAAAA 57.531 30.769 0.00 0.00 0.00 2.29
4470 4637 9.086758 AGATCACAGAAAAGAAAGATGGAAAAT 57.913 29.630 0.00 0.00 0.00 1.82
4471 4638 9.136952 GATCACAGAAAAGAAAGATGGAAAATG 57.863 33.333 0.00 0.00 0.00 2.32
4472 4639 8.236585 TCACAGAAAAGAAAGATGGAAAATGA 57.763 30.769 0.00 0.00 0.00 2.57
4473 4640 8.355169 TCACAGAAAAGAAAGATGGAAAATGAG 58.645 33.333 0.00 0.00 0.00 2.90
4474 4641 8.139989 CACAGAAAAGAAAGATGGAAAATGAGT 58.860 33.333 0.00 0.00 0.00 3.41
4475 4642 8.699130 ACAGAAAAGAAAGATGGAAAATGAGTT 58.301 29.630 0.00 0.00 0.00 3.01
4476 4643 9.538508 CAGAAAAGAAAGATGGAAAATGAGTTT 57.461 29.630 0.00 0.00 0.00 2.66
4483 4650 9.525409 GAAAGATGGAAAATGAGTTTATGATGG 57.475 33.333 0.00 0.00 0.00 3.51
4484 4651 8.827832 AAGATGGAAAATGAGTTTATGATGGA 57.172 30.769 0.00 0.00 0.00 3.41
4485 4652 9.430399 AAGATGGAAAATGAGTTTATGATGGAT 57.570 29.630 0.00 0.00 0.00 3.41
4486 4653 9.430399 AGATGGAAAATGAGTTTATGATGGATT 57.570 29.630 0.00 0.00 0.00 3.01
4487 4654 9.688592 GATGGAAAATGAGTTTATGATGGATTC 57.311 33.333 0.00 0.00 0.00 2.52
4488 4655 8.592529 TGGAAAATGAGTTTATGATGGATTCA 57.407 30.769 0.00 0.00 39.12 2.57
4489 4656 9.033711 TGGAAAATGAGTTTATGATGGATTCAA 57.966 29.630 0.00 0.00 38.03 2.69
4490 4657 9.525409 GGAAAATGAGTTTATGATGGATTCAAG 57.475 33.333 0.00 0.00 38.03 3.02
4491 4658 9.525409 GAAAATGAGTTTATGATGGATTCAAGG 57.475 33.333 0.00 0.00 38.03 3.61
4492 4659 6.645790 ATGAGTTTATGATGGATTCAAGGC 57.354 37.500 0.00 0.00 38.03 4.35
4493 4660 5.759059 TGAGTTTATGATGGATTCAAGGCT 58.241 37.500 0.00 0.00 38.03 4.58
4494 4661 5.591472 TGAGTTTATGATGGATTCAAGGCTG 59.409 40.000 0.00 0.00 38.03 4.85
4495 4662 5.759059 AGTTTATGATGGATTCAAGGCTGA 58.241 37.500 0.00 0.00 38.03 4.26
4496 4663 5.826737 AGTTTATGATGGATTCAAGGCTGAG 59.173 40.000 0.00 0.00 38.03 3.35
4497 4664 3.947612 ATGATGGATTCAAGGCTGAGT 57.052 42.857 0.00 0.00 38.03 3.41
4498 4665 3.726557 TGATGGATTCAAGGCTGAGTT 57.273 42.857 0.00 0.00 31.69 3.01
4499 4666 3.614092 TGATGGATTCAAGGCTGAGTTC 58.386 45.455 0.00 0.00 31.69 3.01
4500 4667 2.099141 TGGATTCAAGGCTGAGTTCG 57.901 50.000 0.00 0.00 31.69 3.95
4501 4668 1.347707 TGGATTCAAGGCTGAGTTCGT 59.652 47.619 0.00 0.00 31.69 3.85
4502 4669 1.734465 GGATTCAAGGCTGAGTTCGTG 59.266 52.381 0.00 0.00 31.69 4.35
4503 4670 2.417719 GATTCAAGGCTGAGTTCGTGT 58.582 47.619 0.00 0.00 31.69 4.49
4504 4671 1.581934 TTCAAGGCTGAGTTCGTGTG 58.418 50.000 0.00 0.00 31.69 3.82
4505 4672 0.464036 TCAAGGCTGAGTTCGTGTGT 59.536 50.000 0.00 0.00 0.00 3.72
4506 4673 1.134521 TCAAGGCTGAGTTCGTGTGTT 60.135 47.619 0.00 0.00 0.00 3.32
4507 4674 1.261619 CAAGGCTGAGTTCGTGTGTTC 59.738 52.381 0.00 0.00 0.00 3.18
4508 4675 0.597637 AGGCTGAGTTCGTGTGTTCG 60.598 55.000 0.00 0.00 0.00 3.95
4509 4676 1.557443 GGCTGAGTTCGTGTGTTCGG 61.557 60.000 0.00 0.00 0.00 4.30
4510 4677 0.596600 GCTGAGTTCGTGTGTTCGGA 60.597 55.000 0.00 0.00 0.00 4.55
4511 4678 1.129326 CTGAGTTCGTGTGTTCGGAC 58.871 55.000 0.00 0.00 39.35 4.79
4513 4680 3.564455 AGTTCGTGTGTTCGGACTC 57.436 52.632 0.00 0.00 45.05 3.36
4514 4681 0.031721 AGTTCGTGTGTTCGGACTCC 59.968 55.000 0.00 0.00 45.05 3.85
4515 4682 0.942884 GTTCGTGTGTTCGGACTCCC 60.943 60.000 0.00 0.00 36.52 4.30
4516 4683 2.048503 CGTGTGTTCGGACTCCCC 60.049 66.667 0.00 0.00 0.00 4.81
4517 4684 2.346365 GTGTGTTCGGACTCCCCC 59.654 66.667 0.00 0.00 0.00 5.40
4525 4692 3.082055 GGACTCCCCCGACCCTTC 61.082 72.222 0.00 0.00 0.00 3.46
4526 4693 3.082055 GACTCCCCCGACCCTTCC 61.082 72.222 0.00 0.00 0.00 3.46
4527 4694 3.918328 GACTCCCCCGACCCTTCCA 62.918 68.421 0.00 0.00 0.00 3.53
4528 4695 2.366972 CTCCCCCGACCCTTCCAT 60.367 66.667 0.00 0.00 0.00 3.41
4529 4696 1.074775 CTCCCCCGACCCTTCCATA 60.075 63.158 0.00 0.00 0.00 2.74
4530 4697 0.693092 CTCCCCCGACCCTTCCATAA 60.693 60.000 0.00 0.00 0.00 1.90
4531 4698 0.693092 TCCCCCGACCCTTCCATAAG 60.693 60.000 0.00 0.00 0.00 1.73
4532 4699 0.986550 CCCCCGACCCTTCCATAAGT 60.987 60.000 0.00 0.00 0.00 2.24
4533 4700 0.916809 CCCCGACCCTTCCATAAGTT 59.083 55.000 0.00 0.00 0.00 2.66
4534 4701 1.134189 CCCCGACCCTTCCATAAGTTC 60.134 57.143 0.00 0.00 0.00 3.01
4535 4702 1.472728 CCCGACCCTTCCATAAGTTCG 60.473 57.143 0.00 0.00 36.66 3.95
4536 4703 1.472728 CCGACCCTTCCATAAGTTCGG 60.473 57.143 9.63 9.63 44.00 4.30
4537 4704 1.472728 CGACCCTTCCATAAGTTCGGG 60.473 57.143 0.00 0.00 34.78 5.14
4538 4705 0.916809 ACCCTTCCATAAGTTCGGGG 59.083 55.000 0.00 0.00 38.39 5.73
4539 4706 0.465642 CCCTTCCATAAGTTCGGGGC 60.466 60.000 0.00 0.00 0.00 5.80
4540 4707 0.814010 CCTTCCATAAGTTCGGGGCG 60.814 60.000 0.00 0.00 0.00 6.13
4541 4708 0.107848 CTTCCATAAGTTCGGGGCGT 60.108 55.000 0.00 0.00 0.00 5.68
4542 4709 0.325602 TTCCATAAGTTCGGGGCGTT 59.674 50.000 0.00 0.00 0.00 4.84
4543 4710 0.325602 TCCATAAGTTCGGGGCGTTT 59.674 50.000 0.00 0.00 0.00 3.60
4544 4711 1.170442 CCATAAGTTCGGGGCGTTTT 58.830 50.000 0.00 0.00 0.00 2.43
4545 4712 1.135517 CCATAAGTTCGGGGCGTTTTG 60.136 52.381 0.00 0.00 0.00 2.44
4546 4713 1.538075 CATAAGTTCGGGGCGTTTTGT 59.462 47.619 0.00 0.00 0.00 2.83
4547 4714 0.945813 TAAGTTCGGGGCGTTTTGTG 59.054 50.000 0.00 0.00 0.00 3.33
4548 4715 1.730451 AAGTTCGGGGCGTTTTGTGG 61.730 55.000 0.00 0.00 0.00 4.17
4549 4716 2.124236 TTCGGGGCGTTTTGTGGT 60.124 55.556 0.00 0.00 0.00 4.16
4550 4717 1.753463 TTCGGGGCGTTTTGTGGTT 60.753 52.632 0.00 0.00 0.00 3.67
4551 4718 2.005960 TTCGGGGCGTTTTGTGGTTG 62.006 55.000 0.00 0.00 0.00 3.77
4552 4719 2.419620 GGGGCGTTTTGTGGTTGG 59.580 61.111 0.00 0.00 0.00 3.77
4553 4720 2.428085 GGGGCGTTTTGTGGTTGGT 61.428 57.895 0.00 0.00 0.00 3.67
4554 4721 1.066752 GGGCGTTTTGTGGTTGGTC 59.933 57.895 0.00 0.00 0.00 4.02
4555 4722 1.388837 GGGCGTTTTGTGGTTGGTCT 61.389 55.000 0.00 0.00 0.00 3.85
4556 4723 0.248866 GGCGTTTTGTGGTTGGTCTG 60.249 55.000 0.00 0.00 0.00 3.51
4557 4724 0.736053 GCGTTTTGTGGTTGGTCTGA 59.264 50.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.532697 GCTAAAACATCATTTGCTTTGTTTATG 57.467 29.630 0.00 0.00 40.39 1.90
4 5 9.492973 AGCTAAAACATCATTTGCTTTGTTTAT 57.507 25.926 0.00 0.00 40.39 1.40
5 6 8.885494 AGCTAAAACATCATTTGCTTTGTTTA 57.115 26.923 0.00 0.00 40.39 2.01
6 7 7.790823 AGCTAAAACATCATTTGCTTTGTTT 57.209 28.000 0.00 0.00 42.40 2.83
7 8 8.885494 TTAGCTAAAACATCATTTGCTTTGTT 57.115 26.923 2.97 0.00 32.68 2.83
8 9 8.359642 TCTTAGCTAAAACATCATTTGCTTTGT 58.640 29.630 7.74 0.00 32.68 2.83
9 10 8.642020 GTCTTAGCTAAAACATCATTTGCTTTG 58.358 33.333 7.74 0.00 32.68 2.77
10 11 8.359642 TGTCTTAGCTAAAACATCATTTGCTTT 58.640 29.630 8.58 0.00 32.68 3.51
11 12 7.885297 TGTCTTAGCTAAAACATCATTTGCTT 58.115 30.769 8.58 0.00 32.68 3.91
12 13 7.452880 TGTCTTAGCTAAAACATCATTTGCT 57.547 32.000 8.58 0.00 33.94 3.91
13 14 7.970061 TCATGTCTTAGCTAAAACATCATTTGC 59.030 33.333 20.19 0.00 30.16 3.68
18 19 9.836864 ACATATCATGTCTTAGCTAAAACATCA 57.163 29.630 20.19 10.49 39.92 3.07
20 21 9.618890 ACACATATCATGTCTTAGCTAAAACAT 57.381 29.630 17.86 17.86 42.70 2.71
21 22 9.448438 AACACATATCATGTCTTAGCTAAAACA 57.552 29.630 14.75 14.75 42.70 2.83
26 27 8.397906 GCAAAAACACATATCATGTCTTAGCTA 58.602 33.333 0.00 0.00 42.70 3.32
27 28 7.121759 AGCAAAAACACATATCATGTCTTAGCT 59.878 33.333 0.00 0.00 42.70 3.32
28 29 7.253422 AGCAAAAACACATATCATGTCTTAGC 58.747 34.615 0.00 0.00 42.70 3.09
31 32 9.410556 GTTTAGCAAAAACACATATCATGTCTT 57.589 29.630 9.17 0.00 42.70 3.01
32 33 8.028938 GGTTTAGCAAAAACACATATCATGTCT 58.971 33.333 14.36 0.00 42.70 3.41
33 34 7.812191 TGGTTTAGCAAAAACACATATCATGTC 59.188 33.333 14.36 0.00 42.70 3.06
34 35 7.665690 TGGTTTAGCAAAAACACATATCATGT 58.334 30.769 14.36 0.00 46.22 3.21
35 36 8.531622 TTGGTTTAGCAAAAACACATATCATG 57.468 30.769 14.36 0.00 41.96 3.07
36 37 7.331687 GCTTGGTTTAGCAAAAACACATATCAT 59.668 33.333 14.36 0.00 41.96 2.45
37 38 6.644592 GCTTGGTTTAGCAAAAACACATATCA 59.355 34.615 14.36 2.45 41.96 2.15
38 39 7.049140 GCTTGGTTTAGCAAAAACACATATC 57.951 36.000 14.36 0.34 41.96 1.63
51 52 5.928153 CAAGTAGTAGTTGCTTGGTTTAGC 58.072 41.667 4.80 0.00 43.38 3.09
59 60 3.560068 GTGTGCACAAGTAGTAGTTGCTT 59.440 43.478 23.59 0.00 31.85 3.91
60 61 3.131396 GTGTGCACAAGTAGTAGTTGCT 58.869 45.455 23.59 3.03 31.85 3.91
61 62 2.869801 TGTGTGCACAAGTAGTAGTTGC 59.130 45.455 23.59 4.84 38.56 4.17
62 63 4.452890 GTGTGTGCACAAGTAGTAGTTG 57.547 45.455 23.59 14.93 43.77 3.16
74 75 1.867233 CCTAGTGTTGAGTGTGTGCAC 59.133 52.381 10.75 10.75 45.57 4.57
75 76 1.810031 GCCTAGTGTTGAGTGTGTGCA 60.810 52.381 0.00 0.00 0.00 4.57
76 77 0.868406 GCCTAGTGTTGAGTGTGTGC 59.132 55.000 0.00 0.00 0.00 4.57
77 78 2.138320 CTGCCTAGTGTTGAGTGTGTG 58.862 52.381 0.00 0.00 0.00 3.82
78 79 1.541233 GCTGCCTAGTGTTGAGTGTGT 60.541 52.381 0.00 0.00 0.00 3.72
79 80 1.151668 GCTGCCTAGTGTTGAGTGTG 58.848 55.000 0.00 0.00 0.00 3.82
80 81 0.758734 TGCTGCCTAGTGTTGAGTGT 59.241 50.000 0.00 0.00 0.00 3.55
81 82 1.151668 GTGCTGCCTAGTGTTGAGTG 58.848 55.000 0.00 0.00 0.00 3.51
82 83 0.758734 TGTGCTGCCTAGTGTTGAGT 59.241 50.000 0.00 0.00 0.00 3.41
83 84 1.532868 GTTGTGCTGCCTAGTGTTGAG 59.467 52.381 0.00 0.00 0.00 3.02
84 85 1.593196 GTTGTGCTGCCTAGTGTTGA 58.407 50.000 0.00 0.00 0.00 3.18
85 86 0.593128 GGTTGTGCTGCCTAGTGTTG 59.407 55.000 0.00 0.00 0.00 3.33
86 87 0.182537 TGGTTGTGCTGCCTAGTGTT 59.817 50.000 0.00 0.00 0.00 3.32
87 88 0.182537 TTGGTTGTGCTGCCTAGTGT 59.817 50.000 0.00 0.00 0.00 3.55
88 89 1.317613 TTTGGTTGTGCTGCCTAGTG 58.682 50.000 0.00 0.00 0.00 2.74
89 90 2.292828 ATTTGGTTGTGCTGCCTAGT 57.707 45.000 0.00 0.00 0.00 2.57
90 91 4.202050 GGATAATTTGGTTGTGCTGCCTAG 60.202 45.833 0.00 0.00 0.00 3.02
91 92 3.699038 GGATAATTTGGTTGTGCTGCCTA 59.301 43.478 0.00 0.00 0.00 3.93
92 93 2.497273 GGATAATTTGGTTGTGCTGCCT 59.503 45.455 0.00 0.00 0.00 4.75
93 94 2.233431 TGGATAATTTGGTTGTGCTGCC 59.767 45.455 0.00 0.00 0.00 4.85
94 95 3.591196 TGGATAATTTGGTTGTGCTGC 57.409 42.857 0.00 0.00 0.00 5.25
726 760 4.760047 GCGGCGGACCATGTCAGT 62.760 66.667 9.78 0.00 33.68 3.41
784 818 4.144727 GGAGCGAGGAGAGGGGGA 62.145 72.222 0.00 0.00 0.00 4.81
1013 1070 0.514691 GTCAAGAAGCCAGTCAAGCG 59.485 55.000 0.00 0.00 34.64 4.68
1044 1101 0.108804 GGATCGAAGCGACTGAACCA 60.109 55.000 0.00 0.00 39.18 3.67
1045 1102 1.140407 CGGATCGAAGCGACTGAACC 61.140 60.000 0.00 0.00 39.18 3.62
1046 1103 1.140407 CCGGATCGAAGCGACTGAAC 61.140 60.000 0.00 0.00 39.18 3.18
1047 1104 1.138883 CCGGATCGAAGCGACTGAA 59.861 57.895 0.00 0.00 39.18 3.02
1065 1122 0.371645 CGTTCATCTTCTTGGCTCGC 59.628 55.000 0.00 0.00 0.00 5.03
1123 1189 1.298859 GCATTCTTCTTGGGCGTCGT 61.299 55.000 0.00 0.00 0.00 4.34
1381 1453 3.808656 GACGTCGACGGAGGGGAC 61.809 72.222 37.89 17.43 44.95 4.46
1542 1614 1.485838 GCGGCACAGAGATCACATCG 61.486 60.000 0.00 0.00 0.00 3.84
1578 1650 1.691434 AGATCTTGGAGGGCGATCTTC 59.309 52.381 0.00 0.00 40.58 2.87
1644 1716 2.357593 AGGTCAGGTTTGTGGCCCTG 62.358 60.000 0.00 0.00 43.95 4.45
1698 1770 2.202987 GCAGCTGATGGAGACCGG 60.203 66.667 20.43 0.00 0.00 5.28
1758 1830 4.471747 GGGTATTCCTTCTTCTCTGAGGTT 59.528 45.833 4.59 0.00 0.00 3.50
1875 1947 0.385751 CGGTCCAGTCATGCGAGTAT 59.614 55.000 0.00 0.00 0.00 2.12
1977 2049 0.954452 GGCACACACCCTTTCTGAAG 59.046 55.000 0.00 0.00 0.00 3.02
2115 2187 4.306967 TCATCGGTGGTGTGCGCA 62.307 61.111 5.66 5.66 0.00 6.09
2193 2265 0.752009 CTGCCATCTCCATTGCAGCT 60.752 55.000 0.00 0.00 40.77 4.24
2328 2400 0.096454 GTAGCGTCGGAACATTTGGC 59.904 55.000 0.00 0.00 0.00 4.52
2394 2466 2.035449 CACAGGCATATCCCTTGCATTG 59.965 50.000 0.00 0.00 41.95 2.82
2413 2485 2.678190 GCAACAGGGAGTAGTCATCCAC 60.678 54.545 0.00 0.00 38.70 4.02
2640 2712 1.954528 CTGCTGTTGCTGGAACTGG 59.045 57.895 17.73 10.05 40.48 4.00
2691 2763 1.890573 TGGTTATCCACAGCCTTTGGC 60.891 52.381 0.00 0.00 43.51 4.52
2706 2778 2.009051 CGTGAATGCATCTGCTGGTTA 58.991 47.619 0.00 0.00 42.66 2.85
2716 2788 0.182061 AGGGATGAGCGTGAATGCAT 59.818 50.000 0.00 0.00 37.31 3.96
2784 2856 1.078759 GTGACCCAGATTCGACGCAG 61.079 60.000 0.00 0.00 0.00 5.18
2802 2874 1.486211 CTAGGTGGGAGTTCATCGGT 58.514 55.000 0.00 0.00 0.00 4.69
2805 2877 1.474143 GCAGCTAGGTGGGAGTTCATC 60.474 57.143 22.69 0.00 0.00 2.92
3105 3177 1.930251 TCTCTGGTGGAGACTCCTTG 58.070 55.000 22.14 9.58 45.20 3.61
3132 3204 2.408271 TGATGGATTCAGCTGTGGTC 57.592 50.000 14.67 10.06 0.00 4.02
3162 3234 4.517285 GATGCATTTGAGGTGAAGGTCTA 58.483 43.478 0.00 0.00 0.00 2.59
3208 3280 3.046087 CTGCGTGCTCACACTGGG 61.046 66.667 0.69 0.00 45.10 4.45
3249 3321 4.225497 AGCAGCGCTCCAATAACC 57.775 55.556 7.13 0.00 30.62 2.85
3338 3410 2.245438 CTTCTTCTCGCACCTCCCCC 62.245 65.000 0.00 0.00 0.00 5.40
3414 3487 2.320587 GCTTGCTGACTGACCACCG 61.321 63.158 0.00 0.00 0.00 4.94
3427 3500 2.654912 CGCTTGCTTGCTTGCTTGC 61.655 57.895 3.47 6.27 0.00 4.01
3550 3626 8.859236 GGTAACTCCACTCTTTAATTTAACCT 57.141 34.615 0.00 0.00 35.97 3.50
3577 3654 2.457323 TTCGGCCCCAAACTGAGGT 61.457 57.895 0.00 0.00 0.00 3.85
3578 3655 1.971695 GTTCGGCCCCAAACTGAGG 60.972 63.158 0.00 0.00 0.00 3.86
3579 3656 2.325082 CGTTCGGCCCCAAACTGAG 61.325 63.158 0.00 0.00 0.00 3.35
3580 3657 2.281208 CGTTCGGCCCCAAACTGA 60.281 61.111 0.00 0.00 0.00 3.41
3637 3714 6.716628 ACAACTAAATCTTTTCTGGCTGATGA 59.283 34.615 0.00 0.00 0.00 2.92
3638 3715 6.917533 ACAACTAAATCTTTTCTGGCTGATG 58.082 36.000 0.00 0.00 0.00 3.07
3639 3716 6.944862 AGACAACTAAATCTTTTCTGGCTGAT 59.055 34.615 0.00 0.00 0.00 2.90
3640 3717 6.299141 AGACAACTAAATCTTTTCTGGCTGA 58.701 36.000 0.00 0.00 0.00 4.26
3641 3718 6.566197 AGACAACTAAATCTTTTCTGGCTG 57.434 37.500 0.00 0.00 0.00 4.85
3868 3950 9.350357 CACAAATCATGTTGAAGGAAGAATTAG 57.650 33.333 3.26 0.00 41.46 1.73
3922 4009 4.761739 GGAATCAACAACATCTTCTGACCA 59.238 41.667 0.00 0.00 0.00 4.02
3935 4022 7.174413 TCCATGAACAATAGAGGAATCAACAA 58.826 34.615 0.00 0.00 0.00 2.83
4012 4125 4.535526 TGAGATGAACCAAGATTCGACA 57.464 40.909 0.00 0.00 0.00 4.35
4032 4150 4.276678 TCACAAGAAATTCAGGAGCACTTG 59.723 41.667 0.00 0.00 39.02 3.16
4063 4200 0.958091 CAAAACCCTGGTTGCATCGA 59.042 50.000 1.58 0.00 38.47 3.59
4080 4218 7.180229 TCCATCTATCTACCAGTCAAGAAACAA 59.820 37.037 0.00 0.00 0.00 2.83
4100 4240 2.003072 ACCACCCCTGAAATTCCATCT 58.997 47.619 0.00 0.00 0.00 2.90
4101 4241 2.102578 CACCACCCCTGAAATTCCATC 58.897 52.381 0.00 0.00 0.00 3.51
4102 4242 1.273211 CCACCACCCCTGAAATTCCAT 60.273 52.381 0.00 0.00 0.00 3.41
4103 4243 0.114168 CCACCACCCCTGAAATTCCA 59.886 55.000 0.00 0.00 0.00 3.53
4116 4256 3.333804 CCAATAAAAATGCACCCACCAC 58.666 45.455 0.00 0.00 0.00 4.16
4118 4258 2.355197 GCCAATAAAAATGCACCCACC 58.645 47.619 0.00 0.00 0.00 4.61
4177 4344 4.195225 GGGGATAAGATTCCACGATCTC 57.805 50.000 0.00 0.00 35.37 2.75
4272 4439 3.430651 CCACTGTCAAAAACTGGTGCAAT 60.431 43.478 0.00 0.00 33.84 3.56
4273 4440 2.094286 CCACTGTCAAAAACTGGTGCAA 60.094 45.455 0.00 0.00 33.84 4.08
4274 4441 1.476085 CCACTGTCAAAAACTGGTGCA 59.524 47.619 0.00 0.00 33.84 4.57
4294 4461 5.662674 ATATTCTACATCTAGAACCGCCC 57.337 43.478 0.00 0.00 41.00 6.13
4304 4471 9.095065 GTACGTTCCAAACAATATTCTACATCT 57.905 33.333 0.00 0.00 0.00 2.90
4324 4491 4.426736 TCCCTTGGAGAAAAAGTACGTT 57.573 40.909 0.00 0.00 0.00 3.99
4342 4509 0.949397 GTTCGTTTTGGTGACCTCCC 59.051 55.000 2.11 0.00 0.00 4.30
4345 4512 1.476291 GGAGGTTCGTTTTGGTGACCT 60.476 52.381 2.11 0.00 0.00 3.85
4346 4513 0.949397 GGAGGTTCGTTTTGGTGACC 59.051 55.000 0.00 0.00 0.00 4.02
4349 4516 0.865769 CGAGGAGGTTCGTTTTGGTG 59.134 55.000 0.00 0.00 35.91 4.17
4350 4517 0.754472 TCGAGGAGGTTCGTTTTGGT 59.246 50.000 0.00 0.00 41.22 3.67
4368 4535 1.465689 CGCAAACACATCCGGACATTC 60.466 52.381 6.12 0.00 0.00 2.67
4376 4543 0.238289 CACTGTCCGCAAACACATCC 59.762 55.000 0.00 0.00 0.00 3.51
4380 4547 0.238289 CCATCACTGTCCGCAAACAC 59.762 55.000 0.00 0.00 0.00 3.32
4381 4548 0.179032 ACCATCACTGTCCGCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
4382 4549 0.238289 CACCATCACTGTCCGCAAAC 59.762 55.000 0.00 0.00 0.00 2.93
4383 4550 0.888736 CCACCATCACTGTCCGCAAA 60.889 55.000 0.00 0.00 0.00 3.68
4384 4551 1.302431 CCACCATCACTGTCCGCAA 60.302 57.895 0.00 0.00 0.00 4.85
4385 4552 2.347114 CCACCATCACTGTCCGCA 59.653 61.111 0.00 0.00 0.00 5.69
4386 4553 2.034879 CACCACCATCACTGTCCGC 61.035 63.158 0.00 0.00 0.00 5.54
4387 4554 2.034879 GCACCACCATCACTGTCCG 61.035 63.158 0.00 0.00 0.00 4.79
4388 4555 1.675641 GGCACCACCATCACTGTCC 60.676 63.158 0.00 0.00 38.86 4.02
4389 4556 2.034879 CGGCACCACCATCACTGTC 61.035 63.158 0.00 0.00 39.03 3.51
4390 4557 2.032528 CGGCACCACCATCACTGT 59.967 61.111 0.00 0.00 39.03 3.55
4391 4558 2.747460 CCGGCACCACCATCACTG 60.747 66.667 0.00 0.00 39.03 3.66
4392 4559 4.722700 GCCGGCACCACCATCACT 62.723 66.667 24.80 0.00 39.03 3.41
4395 4562 4.740822 AAGGCCGGCACCACCATC 62.741 66.667 30.85 8.01 39.03 3.51
4396 4563 4.740822 GAAGGCCGGCACCACCAT 62.741 66.667 30.85 2.21 39.03 3.55
4399 4566 4.966787 TTGGAAGGCCGGCACCAC 62.967 66.667 29.52 18.14 36.79 4.16
4400 4567 4.966787 GTTGGAAGGCCGGCACCA 62.967 66.667 30.85 28.63 36.79 4.17
4401 4568 4.966787 TGTTGGAAGGCCGGCACC 62.967 66.667 30.85 26.42 36.79 5.01
4402 4569 1.815817 ATTTGTTGGAAGGCCGGCAC 61.816 55.000 30.85 17.34 36.79 5.01
4403 4570 0.251386 TATTTGTTGGAAGGCCGGCA 60.251 50.000 30.85 3.35 36.79 5.69
4404 4571 1.067060 GATATTTGTTGGAAGGCCGGC 59.933 52.381 21.18 21.18 36.79 6.13
4405 4572 1.681264 GGATATTTGTTGGAAGGCCGG 59.319 52.381 0.00 0.00 36.79 6.13
4406 4573 1.333619 CGGATATTTGTTGGAAGGCCG 59.666 52.381 0.00 0.00 36.79 6.13
4407 4574 2.357952 GACGGATATTTGTTGGAAGGCC 59.642 50.000 0.00 0.00 0.00 5.19
4408 4575 2.357952 GGACGGATATTTGTTGGAAGGC 59.642 50.000 0.00 0.00 0.00 4.35
4409 4576 2.949644 GGGACGGATATTTGTTGGAAGG 59.050 50.000 0.00 0.00 0.00 3.46
4410 4577 3.886123 AGGGACGGATATTTGTTGGAAG 58.114 45.455 0.00 0.00 0.00 3.46
4411 4578 4.013728 CAAGGGACGGATATTTGTTGGAA 58.986 43.478 0.00 0.00 0.00 3.53
4412 4579 3.009695 ACAAGGGACGGATATTTGTTGGA 59.990 43.478 0.00 0.00 0.00 3.53
4413 4580 3.352648 ACAAGGGACGGATATTTGTTGG 58.647 45.455 0.00 0.00 0.00 3.77
4414 4581 3.377172 GGACAAGGGACGGATATTTGTTG 59.623 47.826 0.00 0.00 32.58 3.33
4415 4582 3.617284 GGACAAGGGACGGATATTTGTT 58.383 45.455 0.00 0.00 32.58 2.83
4416 4583 2.419574 CGGACAAGGGACGGATATTTGT 60.420 50.000 0.00 0.00 34.91 2.83
4417 4584 2.159014 TCGGACAAGGGACGGATATTTG 60.159 50.000 0.00 0.00 0.00 2.32
4418 4585 2.112998 TCGGACAAGGGACGGATATTT 58.887 47.619 0.00 0.00 0.00 1.40
4419 4586 1.784358 TCGGACAAGGGACGGATATT 58.216 50.000 0.00 0.00 0.00 1.28
4420 4587 1.618837 CATCGGACAAGGGACGGATAT 59.381 52.381 0.00 0.00 30.29 1.63
4421 4588 1.037493 CATCGGACAAGGGACGGATA 58.963 55.000 0.00 0.00 30.29 2.59
4422 4589 1.823295 CATCGGACAAGGGACGGAT 59.177 57.895 0.00 0.00 31.18 4.18
4423 4590 3.014085 GCATCGGACAAGGGACGGA 62.014 63.158 0.00 0.00 0.00 4.69
4424 4591 2.511600 GCATCGGACAAGGGACGG 60.512 66.667 0.00 0.00 0.00 4.79
4425 4592 1.811266 CTGCATCGGACAAGGGACG 60.811 63.158 0.00 0.00 0.00 4.79
4426 4593 0.460987 CTCTGCATCGGACAAGGGAC 60.461 60.000 0.00 0.00 0.00 4.46
4427 4594 0.614697 TCTCTGCATCGGACAAGGGA 60.615 55.000 0.00 0.00 0.00 4.20
4428 4595 0.467384 ATCTCTGCATCGGACAAGGG 59.533 55.000 0.00 0.00 0.00 3.95
4429 4596 1.137675 TGATCTCTGCATCGGACAAGG 59.862 52.381 0.00 0.00 0.00 3.61
4430 4597 2.200067 GTGATCTCTGCATCGGACAAG 58.800 52.381 0.00 0.00 0.00 3.16
4431 4598 1.550072 TGTGATCTCTGCATCGGACAA 59.450 47.619 0.00 0.00 0.00 3.18
4432 4599 1.135721 CTGTGATCTCTGCATCGGACA 59.864 52.381 0.00 0.00 0.00 4.02
4433 4600 1.406898 TCTGTGATCTCTGCATCGGAC 59.593 52.381 0.00 0.00 0.00 4.79
4434 4601 1.767759 TCTGTGATCTCTGCATCGGA 58.232 50.000 0.00 0.00 0.00 4.55
4435 4602 2.591571 TTCTGTGATCTCTGCATCGG 57.408 50.000 0.00 0.00 0.00 4.18
4436 4603 4.179298 TCTTTTCTGTGATCTCTGCATCG 58.821 43.478 0.00 0.00 0.00 3.84
4437 4604 6.370994 TCTTTCTTTTCTGTGATCTCTGCATC 59.629 38.462 0.00 0.00 0.00 3.91
4438 4605 6.236409 TCTTTCTTTTCTGTGATCTCTGCAT 58.764 36.000 0.00 0.00 0.00 3.96
4439 4606 5.614308 TCTTTCTTTTCTGTGATCTCTGCA 58.386 37.500 0.00 0.00 0.00 4.41
4440 4607 6.403418 CCATCTTTCTTTTCTGTGATCTCTGC 60.403 42.308 0.00 0.00 0.00 4.26
4441 4608 6.877855 TCCATCTTTCTTTTCTGTGATCTCTG 59.122 38.462 0.00 0.00 0.00 3.35
4442 4609 7.013823 TCCATCTTTCTTTTCTGTGATCTCT 57.986 36.000 0.00 0.00 0.00 3.10
4443 4610 7.678947 TTCCATCTTTCTTTTCTGTGATCTC 57.321 36.000 0.00 0.00 0.00 2.75
4444 4611 8.469309 TTTTCCATCTTTCTTTTCTGTGATCT 57.531 30.769 0.00 0.00 0.00 2.75
4445 4612 9.136952 CATTTTCCATCTTTCTTTTCTGTGATC 57.863 33.333 0.00 0.00 0.00 2.92
4446 4613 8.863086 TCATTTTCCATCTTTCTTTTCTGTGAT 58.137 29.630 0.00 0.00 0.00 3.06
4447 4614 8.236585 TCATTTTCCATCTTTCTTTTCTGTGA 57.763 30.769 0.00 0.00 0.00 3.58
4448 4615 8.139989 ACTCATTTTCCATCTTTCTTTTCTGTG 58.860 33.333 0.00 0.00 0.00 3.66
4449 4616 8.242729 ACTCATTTTCCATCTTTCTTTTCTGT 57.757 30.769 0.00 0.00 0.00 3.41
4450 4617 9.538508 AAACTCATTTTCCATCTTTCTTTTCTG 57.461 29.630 0.00 0.00 0.00 3.02
4457 4624 9.525409 CCATCATAAACTCATTTTCCATCTTTC 57.475 33.333 0.00 0.00 0.00 2.62
4458 4625 9.258629 TCCATCATAAACTCATTTTCCATCTTT 57.741 29.630 0.00 0.00 0.00 2.52
4459 4626 8.827832 TCCATCATAAACTCATTTTCCATCTT 57.172 30.769 0.00 0.00 0.00 2.40
4460 4627 9.430399 AATCCATCATAAACTCATTTTCCATCT 57.570 29.630 0.00 0.00 0.00 2.90
4461 4628 9.688592 GAATCCATCATAAACTCATTTTCCATC 57.311 33.333 0.00 0.00 0.00 3.51
4462 4629 9.204337 TGAATCCATCATAAACTCATTTTCCAT 57.796 29.630 0.00 0.00 31.50 3.41
4463 4630 8.592529 TGAATCCATCATAAACTCATTTTCCA 57.407 30.769 0.00 0.00 31.50 3.53
4464 4631 9.525409 CTTGAATCCATCATAAACTCATTTTCC 57.475 33.333 0.00 0.00 38.03 3.13
4465 4632 9.525409 CCTTGAATCCATCATAAACTCATTTTC 57.475 33.333 0.00 0.00 38.03 2.29
4466 4633 7.983484 GCCTTGAATCCATCATAAACTCATTTT 59.017 33.333 0.00 0.00 38.03 1.82
4467 4634 7.343833 AGCCTTGAATCCATCATAAACTCATTT 59.656 33.333 0.00 0.00 38.03 2.32
4468 4635 6.837568 AGCCTTGAATCCATCATAAACTCATT 59.162 34.615 0.00 0.00 38.03 2.57
4469 4636 6.264744 CAGCCTTGAATCCATCATAAACTCAT 59.735 38.462 0.00 0.00 38.03 2.90
4470 4637 5.591472 CAGCCTTGAATCCATCATAAACTCA 59.409 40.000 0.00 0.00 38.03 3.41
4471 4638 5.824624 TCAGCCTTGAATCCATCATAAACTC 59.175 40.000 0.00 0.00 38.03 3.01
4472 4639 5.759059 TCAGCCTTGAATCCATCATAAACT 58.241 37.500 0.00 0.00 38.03 2.66
4473 4640 5.591877 ACTCAGCCTTGAATCCATCATAAAC 59.408 40.000 0.00 0.00 38.03 2.01
4474 4641 5.759059 ACTCAGCCTTGAATCCATCATAAA 58.241 37.500 0.00 0.00 38.03 1.40
4475 4642 5.378230 ACTCAGCCTTGAATCCATCATAA 57.622 39.130 0.00 0.00 38.03 1.90
4476 4643 5.371526 GAACTCAGCCTTGAATCCATCATA 58.628 41.667 0.00 0.00 38.03 2.15
4477 4644 3.947612 ACTCAGCCTTGAATCCATCAT 57.052 42.857 0.00 0.00 38.03 2.45
4478 4645 3.614092 GAACTCAGCCTTGAATCCATCA 58.386 45.455 0.00 0.00 35.85 3.07
4479 4646 2.611292 CGAACTCAGCCTTGAATCCATC 59.389 50.000 0.00 0.00 31.69 3.51
4480 4647 2.026822 ACGAACTCAGCCTTGAATCCAT 60.027 45.455 0.00 0.00 31.69 3.41
4481 4648 1.347707 ACGAACTCAGCCTTGAATCCA 59.652 47.619 0.00 0.00 31.69 3.41
4482 4649 1.734465 CACGAACTCAGCCTTGAATCC 59.266 52.381 0.00 0.00 31.69 3.01
4483 4650 2.158449 CACACGAACTCAGCCTTGAATC 59.842 50.000 0.00 0.00 31.69 2.52
4484 4651 2.146342 CACACGAACTCAGCCTTGAAT 58.854 47.619 0.00 0.00 31.69 2.57
4485 4652 1.134521 ACACACGAACTCAGCCTTGAA 60.135 47.619 0.00 0.00 31.69 2.69
4486 4653 0.464036 ACACACGAACTCAGCCTTGA 59.536 50.000 0.00 0.00 0.00 3.02
4487 4654 1.261619 GAACACACGAACTCAGCCTTG 59.738 52.381 0.00 0.00 0.00 3.61
4488 4655 1.583054 GAACACACGAACTCAGCCTT 58.417 50.000 0.00 0.00 0.00 4.35
4489 4656 0.597637 CGAACACACGAACTCAGCCT 60.598 55.000 0.00 0.00 35.09 4.58
4490 4657 1.557443 CCGAACACACGAACTCAGCC 61.557 60.000 0.00 0.00 35.09 4.85
4491 4658 0.596600 TCCGAACACACGAACTCAGC 60.597 55.000 0.00 0.00 35.09 4.26
4492 4659 1.129326 GTCCGAACACACGAACTCAG 58.871 55.000 0.00 0.00 35.09 3.35
4493 4660 0.742505 AGTCCGAACACACGAACTCA 59.257 50.000 0.00 0.00 35.09 3.41
4494 4661 1.406447 GAGTCCGAACACACGAACTC 58.594 55.000 0.00 0.00 39.96 3.01
4495 4662 0.031721 GGAGTCCGAACACACGAACT 59.968 55.000 0.00 0.00 32.91 3.01
4496 4663 0.942884 GGGAGTCCGAACACACGAAC 60.943 60.000 2.26 0.00 35.09 3.95
4497 4664 1.364901 GGGAGTCCGAACACACGAA 59.635 57.895 2.26 0.00 35.09 3.85
4498 4665 2.567497 GGGGAGTCCGAACACACGA 61.567 63.158 2.26 0.00 35.09 4.35
4499 4666 2.048503 GGGGAGTCCGAACACACG 60.049 66.667 2.26 0.00 0.00 4.49
4500 4667 2.346365 GGGGGAGTCCGAACACAC 59.654 66.667 2.26 0.00 36.01 3.82
4508 4675 3.082055 GAAGGGTCGGGGGAGTCC 61.082 72.222 0.00 0.00 0.00 3.85
4509 4676 3.082055 GGAAGGGTCGGGGGAGTC 61.082 72.222 0.00 0.00 0.00 3.36
4510 4677 1.893588 TATGGAAGGGTCGGGGGAGT 61.894 60.000 0.00 0.00 0.00 3.85
4511 4678 0.693092 TTATGGAAGGGTCGGGGGAG 60.693 60.000 0.00 0.00 0.00 4.30
4512 4679 0.693092 CTTATGGAAGGGTCGGGGGA 60.693 60.000 0.00 0.00 0.00 4.81
4513 4680 0.986550 ACTTATGGAAGGGTCGGGGG 60.987 60.000 0.00 0.00 36.95 5.40
4514 4681 0.916809 AACTTATGGAAGGGTCGGGG 59.083 55.000 0.00 0.00 36.95 5.73
4515 4682 1.472728 CGAACTTATGGAAGGGTCGGG 60.473 57.143 0.00 0.00 39.13 5.14
4516 4683 1.935933 CGAACTTATGGAAGGGTCGG 58.064 55.000 0.00 0.00 39.13 4.79
4517 4684 1.472728 CCCGAACTTATGGAAGGGTCG 60.473 57.143 0.00 0.00 40.92 4.79
4518 4685 1.134189 CCCCGAACTTATGGAAGGGTC 60.134 57.143 0.00 0.00 36.95 4.46
4519 4686 0.916809 CCCCGAACTTATGGAAGGGT 59.083 55.000 0.00 0.00 36.95 4.34
4520 4687 0.465642 GCCCCGAACTTATGGAAGGG 60.466 60.000 0.00 0.00 36.95 3.95
4521 4688 0.814010 CGCCCCGAACTTATGGAAGG 60.814 60.000 0.00 0.00 36.95 3.46
4522 4689 0.107848 ACGCCCCGAACTTATGGAAG 60.108 55.000 0.00 0.00 38.76 3.46
4523 4690 0.325602 AACGCCCCGAACTTATGGAA 59.674 50.000 0.00 0.00 0.00 3.53
4524 4691 0.325602 AAACGCCCCGAACTTATGGA 59.674 50.000 0.00 0.00 0.00 3.41
4525 4692 1.135517 CAAAACGCCCCGAACTTATGG 60.136 52.381 0.00 0.00 0.00 2.74
4526 4693 1.538075 ACAAAACGCCCCGAACTTATG 59.462 47.619 0.00 0.00 0.00 1.90
4527 4694 1.538075 CACAAAACGCCCCGAACTTAT 59.462 47.619 0.00 0.00 0.00 1.73
4528 4695 0.945813 CACAAAACGCCCCGAACTTA 59.054 50.000 0.00 0.00 0.00 2.24
4529 4696 1.730451 CCACAAAACGCCCCGAACTT 61.730 55.000 0.00 0.00 0.00 2.66
4530 4697 2.190841 CCACAAAACGCCCCGAACT 61.191 57.895 0.00 0.00 0.00 3.01
4531 4698 2.007113 AACCACAAAACGCCCCGAAC 62.007 55.000 0.00 0.00 0.00 3.95
4532 4699 1.753463 AACCACAAAACGCCCCGAA 60.753 52.632 0.00 0.00 0.00 4.30
4533 4700 2.124236 AACCACAAAACGCCCCGA 60.124 55.556 0.00 0.00 0.00 5.14
4534 4701 2.026879 CAACCACAAAACGCCCCG 59.973 61.111 0.00 0.00 0.00 5.73
4535 4702 2.358193 GACCAACCACAAAACGCCCC 62.358 60.000 0.00 0.00 0.00 5.80
4536 4703 1.066752 GACCAACCACAAAACGCCC 59.933 57.895 0.00 0.00 0.00 6.13
4537 4704 0.248866 CAGACCAACCACAAAACGCC 60.249 55.000 0.00 0.00 0.00 5.68
4538 4705 0.736053 TCAGACCAACCACAAAACGC 59.264 50.000 0.00 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.