Multiple sequence alignment - TraesCS4A01G276300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G276300 chr4A 100.000 4028 0 0 1 4028 584814007 584809980 0.000000e+00 7439.0
1 TraesCS4A01G276300 chr4A 100.000 518 0 0 3511 4028 584803588 584803071 0.000000e+00 957.0
2 TraesCS4A01G276300 chr4A 99.425 522 3 0 3507 4028 553887920 553888441 0.000000e+00 948.0
3 TraesCS4A01G276300 chr4B 93.250 1511 74 11 1574 3057 27111457 27112966 0.000000e+00 2200.0
4 TraesCS4A01G276300 chr4B 83.732 1254 198 4 1541 2794 27125771 27127018 0.000000e+00 1181.0
5 TraesCS4A01G276300 chr4B 84.733 655 56 19 885 1499 27110783 27111433 2.060000e-172 616.0
6 TraesCS4A01G276300 chr4B 83.133 249 33 9 1106 1350 27123831 27124074 6.780000e-53 219.0
7 TraesCS4A01G276300 chr4B 83.333 108 14 3 3399 3502 27113321 27113428 3.310000e-16 97.1
8 TraesCS4A01G276300 chr4D 92.738 1501 95 10 1570 3057 15788697 15790196 0.000000e+00 2156.0
9 TraesCS4A01G276300 chr4D 83.717 1259 192 8 1541 2794 15796139 15797389 0.000000e+00 1177.0
10 TraesCS4A01G276300 chr4D 84.759 643 51 21 866 1490 15787789 15788402 5.760000e-168 601.0
11 TraesCS4A01G276300 chr7B 99.858 706 1 0 1 706 321350420 321349715 0.000000e+00 1299.0
12 TraesCS4A01G276300 chr7B 98.679 530 6 1 3499 4027 256707821 256708350 0.000000e+00 939.0
13 TraesCS4A01G276300 chr6B 99.292 706 5 0 1 706 9349011 9348306 0.000000e+00 1277.0
14 TraesCS4A01G276300 chr6B 99.614 518 2 0 3511 4028 590307266 590306749 0.000000e+00 946.0
15 TraesCS4A01G276300 chr6B 99.614 518 2 0 3511 4028 590314204 590313687 0.000000e+00 946.0
16 TraesCS4A01G276300 chr6B 98.507 536 7 1 3494 4028 482112079 482111544 0.000000e+00 944.0
17 TraesCS4A01G276300 chr1B 98.006 702 14 0 5 706 36854808 36854107 0.000000e+00 1219.0
18 TraesCS4A01G276300 chr1B 89.286 112 8 4 3033 3143 18302251 18302359 1.950000e-28 137.0
19 TraesCS4A01G276300 chr2D 96.884 706 19 2 3 707 202596514 202595811 0.000000e+00 1179.0
20 TraesCS4A01G276300 chr2D 97.380 687 16 1 3 689 202595127 202595811 0.000000e+00 1168.0
21 TraesCS4A01G276300 chr5D 93.371 709 42 3 3 706 69356332 69355624 0.000000e+00 1044.0
22 TraesCS4A01G276300 chrUn 99.615 519 1 1 3511 4028 453460210 453459692 0.000000e+00 946.0
23 TraesCS4A01G276300 chrUn 100.000 85 0 0 3059 3143 22143243 22143159 1.500000e-34 158.0
24 TraesCS4A01G276300 chr6A 99.615 519 1 1 3511 4028 127015665 127015147 0.000000e+00 946.0
25 TraesCS4A01G276300 chr6A 99.615 519 1 1 3511 4028 127021963 127021445 0.000000e+00 946.0
26 TraesCS4A01G276300 chr6A 97.727 88 2 0 3056 3143 547593781 547593868 6.970000e-33 152.0
27 TraesCS4A01G276300 chr1D 95.745 94 4 0 3052 3145 463576521 463576614 6.970000e-33 152.0
28 TraesCS4A01G276300 chr1A 96.703 91 2 1 3053 3143 575557266 575557355 2.510000e-32 150.0
29 TraesCS4A01G276300 chr6D 94.737 95 5 0 3051 3145 30077359 30077453 9.020000e-32 148.0
30 TraesCS4A01G276300 chr7A 93.000 100 7 0 3044 3143 3013994 3014093 3.240000e-31 147.0
31 TraesCS4A01G276300 chr3D 93.878 98 5 1 3046 3143 129677993 129678089 3.240000e-31 147.0
32 TraesCS4A01G276300 chr3A 93.000 100 6 1 3046 3145 21405977 21406075 1.170000e-30 145.0
33 TraesCS4A01G276300 chr5B 81.250 160 27 3 536 693 206100375 206100533 4.230000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G276300 chr4A 584809980 584814007 4027 True 7439.000000 7439 100.000000 1 4028 1 chr4A.!!$R2 4027
1 TraesCS4A01G276300 chr4A 584803071 584803588 517 True 957.000000 957 100.000000 3511 4028 1 chr4A.!!$R1 517
2 TraesCS4A01G276300 chr4A 553887920 553888441 521 False 948.000000 948 99.425000 3507 4028 1 chr4A.!!$F1 521
3 TraesCS4A01G276300 chr4B 27110783 27113428 2645 False 971.033333 2200 87.105333 885 3502 3 chr4B.!!$F1 2617
4 TraesCS4A01G276300 chr4B 27123831 27127018 3187 False 700.000000 1181 83.432500 1106 2794 2 chr4B.!!$F2 1688
5 TraesCS4A01G276300 chr4D 15787789 15790196 2407 False 1378.500000 2156 88.748500 866 3057 2 chr4D.!!$F2 2191
6 TraesCS4A01G276300 chr4D 15796139 15797389 1250 False 1177.000000 1177 83.717000 1541 2794 1 chr4D.!!$F1 1253
7 TraesCS4A01G276300 chr7B 321349715 321350420 705 True 1299.000000 1299 99.858000 1 706 1 chr7B.!!$R1 705
8 TraesCS4A01G276300 chr7B 256707821 256708350 529 False 939.000000 939 98.679000 3499 4027 1 chr7B.!!$F1 528
9 TraesCS4A01G276300 chr6B 9348306 9349011 705 True 1277.000000 1277 99.292000 1 706 1 chr6B.!!$R1 705
10 TraesCS4A01G276300 chr6B 590306749 590307266 517 True 946.000000 946 99.614000 3511 4028 1 chr6B.!!$R3 517
11 TraesCS4A01G276300 chr6B 590313687 590314204 517 True 946.000000 946 99.614000 3511 4028 1 chr6B.!!$R4 517
12 TraesCS4A01G276300 chr6B 482111544 482112079 535 True 944.000000 944 98.507000 3494 4028 1 chr6B.!!$R2 534
13 TraesCS4A01G276300 chr1B 36854107 36854808 701 True 1219.000000 1219 98.006000 5 706 1 chr1B.!!$R1 701
14 TraesCS4A01G276300 chr2D 202595811 202596514 703 True 1179.000000 1179 96.884000 3 707 1 chr2D.!!$R1 704
15 TraesCS4A01G276300 chr2D 202595127 202595811 684 False 1168.000000 1168 97.380000 3 689 1 chr2D.!!$F1 686
16 TraesCS4A01G276300 chr5D 69355624 69356332 708 True 1044.000000 1044 93.371000 3 706 1 chr5D.!!$R1 703
17 TraesCS4A01G276300 chrUn 453459692 453460210 518 True 946.000000 946 99.615000 3511 4028 1 chrUn.!!$R2 517
18 TraesCS4A01G276300 chr6A 127015147 127015665 518 True 946.000000 946 99.615000 3511 4028 1 chr6A.!!$R1 517
19 TraesCS4A01G276300 chr6A 127021445 127021963 518 True 946.000000 946 99.615000 3511 4028 1 chr6A.!!$R2 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 995 0.041238 AACCTGATCGTCCTCTCCCA 59.959 55.0 0.0 0.0 0.00 4.37 F
1529 3070 0.037697 TGTCCCTGTTTCCGACATCG 60.038 55.0 0.0 0.0 37.69 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2548 4330 0.378257 CAAACTCCATTCCCGATGCG 59.622 55.0 0.00 0.0 34.25 4.73 R
3246 5054 0.032813 TTCCGGAATCCCTACGTCCT 60.033 55.0 14.35 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
707 714 0.738975 CTCACGATAGCACTTCCCGA 59.261 55.000 0.00 0.00 42.67 5.14
708 715 1.134367 CTCACGATAGCACTTCCCGAA 59.866 52.381 0.00 0.00 42.67 4.30
709 716 1.546923 TCACGATAGCACTTCCCGAAA 59.453 47.619 0.00 0.00 42.67 3.46
710 717 1.927174 CACGATAGCACTTCCCGAAAG 59.073 52.381 0.00 0.00 39.71 2.62
711 718 0.931005 CGATAGCACTTCCCGAAAGC 59.069 55.000 0.00 0.00 38.67 3.51
712 719 1.739035 CGATAGCACTTCCCGAAAGCA 60.739 52.381 4.87 0.00 38.67 3.91
713 720 2.356135 GATAGCACTTCCCGAAAGCAA 58.644 47.619 4.87 0.00 38.67 3.91
714 721 2.264005 TAGCACTTCCCGAAAGCAAA 57.736 45.000 4.87 0.00 38.67 3.68
715 722 1.398692 AGCACTTCCCGAAAGCAAAA 58.601 45.000 4.87 0.00 38.67 2.44
716 723 1.338020 AGCACTTCCCGAAAGCAAAAG 59.662 47.619 4.87 0.00 38.67 2.27
717 724 1.770957 CACTTCCCGAAAGCAAAAGC 58.229 50.000 0.00 0.00 38.67 3.51
718 725 1.066908 CACTTCCCGAAAGCAAAAGCA 59.933 47.619 0.00 0.00 38.67 3.91
719 726 1.754226 ACTTCCCGAAAGCAAAAGCAA 59.246 42.857 0.00 0.00 38.67 3.91
720 727 2.127251 CTTCCCGAAAGCAAAAGCAAC 58.873 47.619 0.00 0.00 0.00 4.17
721 728 1.398692 TCCCGAAAGCAAAAGCAACT 58.601 45.000 0.00 0.00 0.00 3.16
722 729 1.754226 TCCCGAAAGCAAAAGCAACTT 59.246 42.857 0.00 0.00 0.00 2.66
723 730 2.167487 TCCCGAAAGCAAAAGCAACTTT 59.833 40.909 0.00 0.00 36.37 2.66
724 731 3.381908 TCCCGAAAGCAAAAGCAACTTTA 59.618 39.130 0.00 0.00 33.91 1.85
725 732 4.038642 TCCCGAAAGCAAAAGCAACTTTAT 59.961 37.500 0.00 0.00 33.91 1.40
726 733 4.150451 CCCGAAAGCAAAAGCAACTTTATG 59.850 41.667 0.00 0.00 33.91 1.90
727 734 4.744631 CCGAAAGCAAAAGCAACTTTATGT 59.255 37.500 0.00 0.00 33.91 2.29
728 735 5.332506 CCGAAAGCAAAAGCAACTTTATGTG 60.333 40.000 0.00 0.00 33.91 3.21
729 736 5.458452 CGAAAGCAAAAGCAACTTTATGTGA 59.542 36.000 0.00 0.00 33.91 3.58
730 737 6.144402 CGAAAGCAAAAGCAACTTTATGTGAT 59.856 34.615 0.00 0.00 33.91 3.06
731 738 6.774354 AAGCAAAAGCAACTTTATGTGATG 57.226 33.333 0.00 0.00 31.99 3.07
732 739 6.088016 AGCAAAAGCAACTTTATGTGATGA 57.912 33.333 0.00 0.00 31.99 2.92
733 740 6.514947 AGCAAAAGCAACTTTATGTGATGAA 58.485 32.000 0.00 0.00 31.99 2.57
734 741 6.985645 AGCAAAAGCAACTTTATGTGATGAAA 59.014 30.769 0.00 0.00 31.99 2.69
735 742 7.042523 AGCAAAAGCAACTTTATGTGATGAAAC 60.043 33.333 0.00 0.00 31.99 2.78
736 743 7.042523 GCAAAAGCAACTTTATGTGATGAAACT 60.043 33.333 0.00 0.00 31.99 2.66
737 744 7.935338 AAAGCAACTTTATGTGATGAAACTG 57.065 32.000 0.00 0.00 31.35 3.16
738 745 6.639632 AGCAACTTTATGTGATGAAACTGT 57.360 33.333 0.00 0.00 0.00 3.55
739 746 7.042797 AGCAACTTTATGTGATGAAACTGTT 57.957 32.000 0.00 0.00 0.00 3.16
740 747 6.919662 AGCAACTTTATGTGATGAAACTGTTG 59.080 34.615 0.00 0.00 35.57 3.33
741 748 6.346040 GCAACTTTATGTGATGAAACTGTTGC 60.346 38.462 0.00 0.00 45.62 4.17
742 749 6.389830 ACTTTATGTGATGAAACTGTTGCA 57.610 33.333 3.18 3.18 0.00 4.08
743 750 6.985117 ACTTTATGTGATGAAACTGTTGCAT 58.015 32.000 13.81 13.81 0.00 3.96
744 751 8.109705 ACTTTATGTGATGAAACTGTTGCATA 57.890 30.769 13.90 0.00 0.00 3.14
745 752 8.239314 ACTTTATGTGATGAAACTGTTGCATAG 58.761 33.333 13.90 8.48 0.00 2.23
746 753 7.686438 TTATGTGATGAAACTGTTGCATAGT 57.314 32.000 13.90 3.88 0.00 2.12
747 754 5.611796 TGTGATGAAACTGTTGCATAGTC 57.388 39.130 13.90 4.01 0.00 2.59
748 755 5.062528 TGTGATGAAACTGTTGCATAGTCA 58.937 37.500 13.90 6.59 0.00 3.41
749 756 5.706833 TGTGATGAAACTGTTGCATAGTCAT 59.293 36.000 13.90 8.23 0.00 3.06
750 757 6.878389 TGTGATGAAACTGTTGCATAGTCATA 59.122 34.615 13.90 5.16 0.00 2.15
751 758 7.064966 TGTGATGAAACTGTTGCATAGTCATAG 59.935 37.037 13.90 0.00 0.00 2.23
752 759 7.065085 GTGATGAAACTGTTGCATAGTCATAGT 59.935 37.037 13.90 0.00 0.00 2.12
753 760 7.607607 TGATGAAACTGTTGCATAGTCATAGTT 59.392 33.333 13.90 0.00 0.00 2.24
754 761 7.744087 TGAAACTGTTGCATAGTCATAGTTT 57.256 32.000 9.21 9.21 36.91 2.66
755 762 8.165239 TGAAACTGTTGCATAGTCATAGTTTT 57.835 30.769 10.37 0.00 35.65 2.43
756 763 8.629158 TGAAACTGTTGCATAGTCATAGTTTTT 58.371 29.630 10.37 0.00 35.65 1.94
778 785 5.787953 TTTCCATTTTCTGAATCTGTGCA 57.212 34.783 0.00 0.00 0.00 4.57
779 786 5.988310 TTCCATTTTCTGAATCTGTGCAT 57.012 34.783 0.00 0.00 0.00 3.96
780 787 5.988310 TCCATTTTCTGAATCTGTGCATT 57.012 34.783 0.00 0.00 0.00 3.56
781 788 5.716094 TCCATTTTCTGAATCTGTGCATTG 58.284 37.500 0.00 0.00 0.00 2.82
782 789 4.328983 CCATTTTCTGAATCTGTGCATTGC 59.671 41.667 0.46 0.46 0.00 3.56
783 790 4.859304 TTTTCTGAATCTGTGCATTGCT 57.141 36.364 10.49 0.00 0.00 3.91
784 791 5.963176 TTTTCTGAATCTGTGCATTGCTA 57.037 34.783 10.49 0.00 0.00 3.49
785 792 4.952262 TTCTGAATCTGTGCATTGCTAC 57.048 40.909 10.49 7.17 0.00 3.58
786 793 3.941573 TCTGAATCTGTGCATTGCTACA 58.058 40.909 10.49 11.15 0.00 2.74
787 794 4.325972 TCTGAATCTGTGCATTGCTACAA 58.674 39.130 10.49 4.90 0.00 2.41
788 795 4.945543 TCTGAATCTGTGCATTGCTACAAT 59.054 37.500 10.49 6.63 0.00 2.71
789 796 6.114767 TCTGAATCTGTGCATTGCTACAATA 58.885 36.000 10.49 4.76 0.00 1.90
790 797 6.037500 TCTGAATCTGTGCATTGCTACAATAC 59.962 38.462 10.49 0.00 0.00 1.89
791 798 5.647225 TGAATCTGTGCATTGCTACAATACA 59.353 36.000 10.49 3.77 0.00 2.29
792 799 5.746307 ATCTGTGCATTGCTACAATACAG 57.254 39.130 14.93 14.93 36.35 2.74
793 800 4.578871 TCTGTGCATTGCTACAATACAGT 58.421 39.130 18.45 0.00 36.40 3.55
794 801 5.003160 TCTGTGCATTGCTACAATACAGTT 58.997 37.500 18.45 0.00 36.40 3.16
795 802 5.473162 TCTGTGCATTGCTACAATACAGTTT 59.527 36.000 18.45 0.00 36.40 2.66
796 803 5.698832 TGTGCATTGCTACAATACAGTTTC 58.301 37.500 10.49 0.00 0.00 2.78
797 804 5.473162 TGTGCATTGCTACAATACAGTTTCT 59.527 36.000 10.49 0.00 0.00 2.52
798 805 6.652900 TGTGCATTGCTACAATACAGTTTCTA 59.347 34.615 10.49 0.00 0.00 2.10
799 806 6.961554 GTGCATTGCTACAATACAGTTTCTAC 59.038 38.462 10.49 0.00 0.00 2.59
800 807 6.183360 TGCATTGCTACAATACAGTTTCTACG 60.183 38.462 10.49 0.00 0.00 3.51
801 808 6.183360 GCATTGCTACAATACAGTTTCTACGT 60.183 38.462 0.16 0.00 0.00 3.57
802 809 7.623506 GCATTGCTACAATACAGTTTCTACGTT 60.624 37.037 0.16 0.00 0.00 3.99
803 810 8.865978 CATTGCTACAATACAGTTTCTACGTTA 58.134 33.333 0.00 0.00 0.00 3.18
804 811 8.456904 TTGCTACAATACAGTTTCTACGTTAG 57.543 34.615 0.00 0.00 0.00 2.34
805 812 7.819644 TGCTACAATACAGTTTCTACGTTAGA 58.180 34.615 0.00 0.00 0.00 2.10
806 813 8.298854 TGCTACAATACAGTTTCTACGTTAGAA 58.701 33.333 0.00 0.00 42.68 2.10
848 855 9.621629 TCTTTTGAAACCTTATTAGACAACTCA 57.378 29.630 0.00 0.00 0.00 3.41
852 859 8.161699 TGAAACCTTATTAGACAACTCAAACC 57.838 34.615 0.00 0.00 0.00 3.27
853 860 7.996644 TGAAACCTTATTAGACAACTCAAACCT 59.003 33.333 0.00 0.00 0.00 3.50
854 861 7.981102 AACCTTATTAGACAACTCAAACCTC 57.019 36.000 0.00 0.00 0.00 3.85
855 862 7.317722 ACCTTATTAGACAACTCAAACCTCT 57.682 36.000 0.00 0.00 0.00 3.69
856 863 7.746703 ACCTTATTAGACAACTCAAACCTCTT 58.253 34.615 0.00 0.00 0.00 2.85
857 864 8.218488 ACCTTATTAGACAACTCAAACCTCTTT 58.782 33.333 0.00 0.00 0.00 2.52
858 865 8.722394 CCTTATTAGACAACTCAAACCTCTTTC 58.278 37.037 0.00 0.00 0.00 2.62
859 866 9.495572 CTTATTAGACAACTCAAACCTCTTTCT 57.504 33.333 0.00 0.00 0.00 2.52
860 867 7.736447 ATTAGACAACTCAAACCTCTTTCTG 57.264 36.000 0.00 0.00 0.00 3.02
861 868 5.359194 AGACAACTCAAACCTCTTTCTGA 57.641 39.130 0.00 0.00 0.00 3.27
862 869 5.745227 AGACAACTCAAACCTCTTTCTGAA 58.255 37.500 0.00 0.00 0.00 3.02
863 870 6.180472 AGACAACTCAAACCTCTTTCTGAAA 58.820 36.000 2.44 2.44 0.00 2.69
864 871 6.094186 AGACAACTCAAACCTCTTTCTGAAAC 59.906 38.462 0.00 0.00 0.00 2.78
872 879 6.874288 AACCTCTTTCTGAAACTTGAGATG 57.126 37.500 15.50 5.15 0.00 2.90
881 888 6.169094 TCTGAAACTTGAGATGATTCAGACC 58.831 40.000 11.32 0.00 46.53 3.85
882 889 6.013898 TCTGAAACTTGAGATGATTCAGACCT 60.014 38.462 11.32 0.00 46.53 3.85
915 922 9.793259 TTTAAAACTGGAGACAATTCAGACTAT 57.207 29.630 0.00 0.00 42.06 2.12
918 925 9.965902 AAAACTGGAGACAATTCAGACTATTAT 57.034 29.630 0.00 0.00 42.06 1.28
981 988 0.652592 CGCATTCAACCTGATCGTCC 59.347 55.000 0.00 0.00 0.00 4.79
983 990 1.936547 GCATTCAACCTGATCGTCCTC 59.063 52.381 0.00 0.00 0.00 3.71
988 995 0.041238 AACCTGATCGTCCTCTCCCA 59.959 55.000 0.00 0.00 0.00 4.37
989 996 0.041238 ACCTGATCGTCCTCTCCCAA 59.959 55.000 0.00 0.00 0.00 4.12
992 999 1.759445 CTGATCGTCCTCTCCCAACAT 59.241 52.381 0.00 0.00 0.00 2.71
993 1000 1.757118 TGATCGTCCTCTCCCAACATC 59.243 52.381 0.00 0.00 0.00 3.06
994 1001 0.747255 ATCGTCCTCTCCCAACATCG 59.253 55.000 0.00 0.00 0.00 3.84
1290 1345 1.538876 CCAGGTCTCCCACTTCCCA 60.539 63.158 0.00 0.00 0.00 4.37
1322 1377 2.738695 GCTCTCTCGTTGCTGCTGC 61.739 63.158 8.89 8.89 40.20 5.25
1323 1378 1.079956 CTCTCTCGTTGCTGCTGCT 60.080 57.895 17.00 0.00 40.48 4.24
1344 1406 2.770164 AATGCCTTCGCTTGTCTAGT 57.230 45.000 0.00 0.00 35.36 2.57
1361 1423 0.175760 AGTCCGGATGGTGTTCGATG 59.824 55.000 7.81 0.00 36.30 3.84
1375 1437 0.327924 TCGATGAATTGCCCCACAGT 59.672 50.000 0.00 0.00 0.00 3.55
1412 1478 0.451383 TCCGAAATTGCTCAATGCCG 59.549 50.000 0.00 3.55 42.00 5.69
1418 1484 1.985447 ATTGCTCAATGCCGTCGCTG 61.985 55.000 0.00 0.00 42.00 5.18
1421 1487 2.031919 TCAATGCCGTCGCTGGTT 59.968 55.556 0.00 0.00 35.36 3.67
1436 1502 0.321210 TGGTTCGGTGATCGTGCAAT 60.321 50.000 0.00 0.00 40.32 3.56
1455 1521 4.441079 GCAATCAGAAATGGGACCATTCAG 60.441 45.833 16.35 9.74 44.86 3.02
1497 2070 9.778741 AATGTTGTAAATTCTCACAGTTCTCTA 57.221 29.630 0.00 0.00 0.00 2.43
1498 2071 8.818141 TGTTGTAAATTCTCACAGTTCTCTAG 57.182 34.615 0.00 0.00 0.00 2.43
1499 2072 7.385205 TGTTGTAAATTCTCACAGTTCTCTAGC 59.615 37.037 0.00 0.00 0.00 3.42
1501 2074 7.316640 TGTAAATTCTCACAGTTCTCTAGCTC 58.683 38.462 0.00 0.00 0.00 4.09
1512 3053 7.386299 CACAGTTCTCTAGCTCTTTTACAATGT 59.614 37.037 0.00 0.00 0.00 2.71
1513 3054 7.600752 ACAGTTCTCTAGCTCTTTTACAATGTC 59.399 37.037 0.00 0.00 0.00 3.06
1515 3056 5.978814 TCTCTAGCTCTTTTACAATGTCCC 58.021 41.667 0.00 0.00 0.00 4.46
1529 3070 0.037697 TGTCCCTGTTTCCGACATCG 60.038 55.000 0.00 0.00 37.69 3.84
1532 3073 1.475280 TCCCTGTTTCCGACATCGTAG 59.525 52.381 0.00 0.00 37.69 3.51
1535 3076 2.186076 CTGTTTCCGACATCGTAGCTC 58.814 52.381 0.00 0.00 37.69 4.09
1538 3079 0.376152 TTCCGACATCGTAGCTCGTC 59.624 55.000 0.00 0.00 40.80 4.20
1545 3113 1.062148 CATCGTAGCTCGTCGAGTTCA 59.938 52.381 22.61 6.33 39.38 3.18
1556 3124 2.395654 GTCGAGTTCACTCAACTGACC 58.604 52.381 7.71 0.00 46.10 4.02
1568 3344 0.600255 AACTGACCGTTCCTTCTGCG 60.600 55.000 0.00 0.00 0.00 5.18
1608 3387 4.805719 GCTTAATTTGGTTCTATTGCCTGC 59.194 41.667 0.00 0.00 0.00 4.85
1609 3388 5.394553 GCTTAATTTGGTTCTATTGCCTGCT 60.395 40.000 0.00 0.00 0.00 4.24
1655 3434 6.446318 TGATGTTGCATGTTTTACCTTCTTC 58.554 36.000 0.00 0.00 0.00 2.87
1675 3455 5.304101 TCTTCCTAACGTGTAGGGTGTTTTA 59.696 40.000 17.99 1.62 35.45 1.52
1679 3459 5.349543 CCTAACGTGTAGGGTGTTTTACATC 59.650 44.000 13.10 0.00 32.87 3.06
1754 3535 2.089349 GTTCTCGCTGCACCTCGTC 61.089 63.158 0.00 0.00 0.00 4.20
1841 3622 4.083271 CCTGGGTTCTTCAAAGAAATCGAC 60.083 45.833 6.76 0.00 45.77 4.20
1916 3697 4.488879 GTGCCCATCTTCTGTTTGATTTC 58.511 43.478 0.00 0.00 0.00 2.17
1991 3772 1.702957 ACAACAAAGAGGGGAATCGGA 59.297 47.619 0.00 0.00 0.00 4.55
2240 4021 6.429385 AGTCGATCTTGCAGAAGAAGAAAATT 59.571 34.615 0.00 0.00 41.64 1.82
2285 4066 4.766891 ACCATGTTAGACATTGACTTTGGG 59.233 41.667 0.00 0.00 36.53 4.12
2412 4194 5.048224 TCAGTTACCTCTGAACCTCTTAACG 60.048 44.000 0.00 0.00 40.82 3.18
2425 4207 4.217983 ACCTCTTAACGTTCTCTTCATCGT 59.782 41.667 2.82 0.00 38.15 3.73
2451 4233 1.866925 GTCTTCCGCTCCAAAACCG 59.133 57.895 0.00 0.00 0.00 4.44
2461 4243 3.851403 CGCTCCAAAACCGAACATATTTG 59.149 43.478 0.00 0.00 33.62 2.32
2522 4304 2.409870 CCATTCCCAACGGAGCTGC 61.410 63.158 0.00 0.00 40.10 5.25
2533 4315 3.123620 GAGCTGCTGGGCAAGACG 61.124 66.667 7.01 0.00 38.41 4.18
2566 4348 1.376609 GCGCATCGGGAATGGAGTTT 61.377 55.000 0.30 0.00 35.77 2.66
2763 4545 4.452733 GTTCCCGGCAGACCTCGG 62.453 72.222 0.00 0.00 45.29 4.63
2800 4583 4.505556 ACAAAGGTAACGAAGAACGAAGAC 59.494 41.667 0.00 0.00 45.77 3.01
2805 4588 0.674534 ACGAAGAACGAAGACCAGCT 59.325 50.000 0.00 0.00 45.77 4.24
2934 4741 3.967335 GATCTCCCGGAGACCGCG 61.967 72.222 19.81 0.00 46.86 6.46
3000 4807 1.136305 CATTACATCGGTGTCGGACCT 59.864 52.381 3.56 0.00 43.55 3.85
3012 4819 4.101448 GGACCTGGGCGTGATGCT 62.101 66.667 0.00 0.00 45.43 3.79
3061 4868 9.634021 TGTCAGACATGTCTCTTATTATCTACT 57.366 33.333 25.58 0.00 37.98 2.57
3063 4870 9.290988 TCAGACATGTCTCTTATTATCTACTCC 57.709 37.037 25.58 0.00 37.98 3.85
3064 4871 8.519526 CAGACATGTCTCTTATTATCTACTCCC 58.480 40.741 25.58 0.00 37.98 4.30
3065 4872 8.452868 AGACATGTCTCTTATTATCTACTCCCT 58.547 37.037 22.89 0.00 34.17 4.20
3066 4873 8.644374 ACATGTCTCTTATTATCTACTCCCTC 57.356 38.462 0.00 0.00 0.00 4.30
3067 4874 7.672239 ACATGTCTCTTATTATCTACTCCCTCC 59.328 40.741 0.00 0.00 0.00 4.30
3068 4875 6.239396 TGTCTCTTATTATCTACTCCCTCCG 58.761 44.000 0.00 0.00 0.00 4.63
3069 4876 6.183361 TGTCTCTTATTATCTACTCCCTCCGT 60.183 42.308 0.00 0.00 0.00 4.69
3070 4877 7.016957 TGTCTCTTATTATCTACTCCCTCCGTA 59.983 40.741 0.00 0.00 0.00 4.02
3071 4878 7.882271 GTCTCTTATTATCTACTCCCTCCGTAA 59.118 40.741 0.00 0.00 0.00 3.18
3072 4879 8.443176 TCTCTTATTATCTACTCCCTCCGTAAA 58.557 37.037 0.00 0.00 0.00 2.01
3073 4880 8.401490 TCTTATTATCTACTCCCTCCGTAAAC 57.599 38.462 0.00 0.00 0.00 2.01
3074 4881 8.223330 TCTTATTATCTACTCCCTCCGTAAACT 58.777 37.037 0.00 0.00 0.00 2.66
3075 4882 9.512588 CTTATTATCTACTCCCTCCGTAAACTA 57.487 37.037 0.00 0.00 0.00 2.24
3076 4883 9.866655 TTATTATCTACTCCCTCCGTAAACTAA 57.133 33.333 0.00 0.00 0.00 2.24
3077 4884 8.953223 ATTATCTACTCCCTCCGTAAACTAAT 57.047 34.615 0.00 0.00 0.00 1.73
3082 4889 9.512588 TCTACTCCCTCCGTAAACTAATATAAG 57.487 37.037 0.00 0.00 0.00 1.73
3083 4890 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
3084 4891 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3085 4892 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
3086 4893 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
3087 4894 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
3088 4895 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
3089 4896 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
3158 4965 5.930135 AGGAAGTATACAAGATCCGCATTT 58.070 37.500 5.50 0.00 35.31 2.32
3160 4967 5.758296 GGAAGTATACAAGATCCGCATTTGA 59.242 40.000 5.50 0.00 0.00 2.69
3179 4987 4.524316 TGAGCAAATGATTCAACCCAAG 57.476 40.909 0.00 0.00 0.00 3.61
3183 4991 2.988493 CAAATGATTCAACCCAAGTGCG 59.012 45.455 0.00 0.00 0.00 5.34
3185 4993 1.234821 TGATTCAACCCAAGTGCGTC 58.765 50.000 0.00 0.00 0.00 5.19
3199 5007 2.561419 AGTGCGTCCTTTACTGCTTCTA 59.439 45.455 0.00 0.00 0.00 2.10
3200 5008 2.666994 GTGCGTCCTTTACTGCTTCTAC 59.333 50.000 0.00 0.00 0.00 2.59
3201 5009 2.269172 GCGTCCTTTACTGCTTCTACC 58.731 52.381 0.00 0.00 0.00 3.18
3202 5010 2.353406 GCGTCCTTTACTGCTTCTACCA 60.353 50.000 0.00 0.00 0.00 3.25
3206 5014 5.548406 GTCCTTTACTGCTTCTACCAAAGA 58.452 41.667 0.00 0.00 0.00 2.52
3216 5024 4.216257 GCTTCTACCAAAGACATTTGCTGA 59.784 41.667 0.00 0.00 43.75 4.26
3219 5027 5.376625 TCTACCAAAGACATTTGCTGACTT 58.623 37.500 0.00 0.00 43.75 3.01
3222 5030 4.586001 ACCAAAGACATTTGCTGACTTGAT 59.414 37.500 0.00 0.00 43.75 2.57
3223 5031 4.921515 CCAAAGACATTTGCTGACTTGATG 59.078 41.667 0.00 0.00 43.75 3.07
3224 5032 3.844577 AGACATTTGCTGACTTGATGC 57.155 42.857 0.00 0.00 0.00 3.91
3225 5033 2.490903 AGACATTTGCTGACTTGATGCC 59.509 45.455 0.00 0.00 0.00 4.40
3226 5034 2.229543 GACATTTGCTGACTTGATGCCA 59.770 45.455 0.00 0.00 0.00 4.92
3227 5035 2.829720 ACATTTGCTGACTTGATGCCAT 59.170 40.909 0.00 0.00 0.00 4.40
3228 5036 3.186909 CATTTGCTGACTTGATGCCATG 58.813 45.455 0.00 0.00 0.00 3.66
3229 5037 1.179152 TTGCTGACTTGATGCCATGG 58.821 50.000 7.63 7.63 0.00 3.66
3230 5038 0.038599 TGCTGACTTGATGCCATGGT 59.961 50.000 14.67 0.00 0.00 3.55
3231 5039 1.281577 TGCTGACTTGATGCCATGGTA 59.718 47.619 14.67 9.89 0.00 3.25
3232 5040 2.092267 TGCTGACTTGATGCCATGGTAT 60.092 45.455 16.00 16.00 0.00 2.73
3233 5041 3.136260 TGCTGACTTGATGCCATGGTATA 59.864 43.478 16.04 0.00 0.00 1.47
3234 5042 3.750130 GCTGACTTGATGCCATGGTATAG 59.250 47.826 16.04 12.69 0.00 1.31
3235 5043 4.744867 GCTGACTTGATGCCATGGTATAGT 60.745 45.833 16.04 15.86 0.00 2.12
3236 5044 5.511373 GCTGACTTGATGCCATGGTATAGTA 60.511 44.000 16.04 2.67 0.00 1.82
3237 5045 6.101650 TGACTTGATGCCATGGTATAGTAG 57.898 41.667 16.04 14.36 0.00 2.57
3238 5046 4.899502 ACTTGATGCCATGGTATAGTAGC 58.100 43.478 16.04 3.44 0.00 3.58
3239 5047 4.594920 ACTTGATGCCATGGTATAGTAGCT 59.405 41.667 16.04 0.00 0.00 3.32
3240 5048 4.541973 TGATGCCATGGTATAGTAGCTG 57.458 45.455 16.04 0.00 0.00 4.24
3241 5049 4.159557 TGATGCCATGGTATAGTAGCTGA 58.840 43.478 16.04 0.00 0.00 4.26
3242 5050 4.021104 TGATGCCATGGTATAGTAGCTGAC 60.021 45.833 16.04 0.49 0.00 3.51
3243 5051 3.576861 TGCCATGGTATAGTAGCTGACT 58.423 45.455 14.67 0.00 42.69 3.41
3244 5052 3.321968 TGCCATGGTATAGTAGCTGACTG 59.678 47.826 14.67 0.00 39.39 3.51
3245 5053 3.306364 GCCATGGTATAGTAGCTGACTGG 60.306 52.174 14.67 0.00 39.39 4.00
3246 5054 4.152647 CCATGGTATAGTAGCTGACTGGA 58.847 47.826 2.57 0.00 39.39 3.86
3247 5055 4.219507 CCATGGTATAGTAGCTGACTGGAG 59.780 50.000 2.57 0.00 39.39 3.86
3248 5056 3.833732 TGGTATAGTAGCTGACTGGAGG 58.166 50.000 0.00 0.00 39.39 4.30
3249 5057 3.462205 TGGTATAGTAGCTGACTGGAGGA 59.538 47.826 0.00 0.00 39.39 3.71
3250 5058 3.822167 GGTATAGTAGCTGACTGGAGGAC 59.178 52.174 0.00 0.00 39.39 3.85
3251 5059 2.039818 TAGTAGCTGACTGGAGGACG 57.960 55.000 0.00 0.00 39.39 4.79
3252 5060 0.038455 AGTAGCTGACTGGAGGACGT 59.962 55.000 0.00 0.00 36.87 4.34
3253 5061 1.281287 AGTAGCTGACTGGAGGACGTA 59.719 52.381 0.00 0.00 36.87 3.57
3254 5062 1.671845 GTAGCTGACTGGAGGACGTAG 59.328 57.143 0.00 0.00 0.00 3.51
3257 5065 0.034380 CTGACTGGAGGACGTAGGGA 60.034 60.000 0.00 0.00 0.00 4.20
3261 5069 1.041437 CTGGAGGACGTAGGGATTCC 58.959 60.000 0.00 0.00 0.00 3.01
3263 5071 1.461911 GGAGGACGTAGGGATTCCGG 61.462 65.000 0.00 0.00 38.33 5.14
3264 5072 0.466922 GAGGACGTAGGGATTCCGGA 60.467 60.000 0.00 0.00 38.33 5.14
3295 5103 3.549299 GAGTTCAGCTCCAACATTGTG 57.451 47.619 7.63 0.00 38.27 3.33
3298 5106 1.689984 TCAGCTCCAACATTGTGCAA 58.310 45.000 0.00 0.00 0.00 4.08
3299 5107 2.030371 TCAGCTCCAACATTGTGCAAA 58.970 42.857 0.00 0.00 0.00 3.68
3302 5110 2.629137 AGCTCCAACATTGTGCAAATGA 59.371 40.909 20.96 5.25 0.00 2.57
3317 5125 3.989817 GCAAATGAAGACACAACCCAATC 59.010 43.478 0.00 0.00 0.00 2.67
3319 5127 5.224888 CAAATGAAGACACAACCCAATCTG 58.775 41.667 0.00 0.00 0.00 2.90
3320 5128 3.855255 TGAAGACACAACCCAATCTGA 57.145 42.857 0.00 0.00 0.00 3.27
3322 5130 4.074259 TGAAGACACAACCCAATCTGATG 58.926 43.478 0.00 0.00 0.00 3.07
3323 5131 4.202451 TGAAGACACAACCCAATCTGATGA 60.202 41.667 0.00 0.00 0.00 2.92
3324 5132 4.581309 AGACACAACCCAATCTGATGAT 57.419 40.909 0.00 0.00 33.70 2.45
3331 5199 3.840991 ACCCAATCTGATGATCAATGGG 58.159 45.455 26.50 26.50 44.22 4.00
3347 5215 3.730158 GGTGAATACCCCACCGGA 58.270 61.111 9.46 0.00 43.80 5.14
3349 5217 0.393402 GGTGAATACCCCACCGGAAC 60.393 60.000 9.46 0.00 43.80 3.62
3350 5218 0.393402 GTGAATACCCCACCGGAACC 60.393 60.000 9.46 0.00 34.64 3.62
3351 5219 0.841158 TGAATACCCCACCGGAACCA 60.841 55.000 9.46 0.00 34.64 3.67
3352 5220 0.393402 GAATACCCCACCGGAACCAC 60.393 60.000 9.46 0.00 34.64 4.16
3353 5221 1.135068 AATACCCCACCGGAACCACA 61.135 55.000 9.46 0.00 34.64 4.17
3354 5222 1.844544 ATACCCCACCGGAACCACAC 61.845 60.000 9.46 0.00 34.64 3.82
3357 5225 4.920112 CCACCGGAACCACACGCA 62.920 66.667 9.46 0.00 0.00 5.24
3358 5226 2.668212 CACCGGAACCACACGCAT 60.668 61.111 9.46 0.00 0.00 4.73
3361 5229 1.963855 CCGGAACCACACGCATGAA 60.964 57.895 0.00 0.00 0.00 2.57
3362 5230 1.511318 CCGGAACCACACGCATGAAA 61.511 55.000 0.00 0.00 0.00 2.69
3363 5231 0.309302 CGGAACCACACGCATGAAAA 59.691 50.000 0.00 0.00 0.00 2.29
3364 5232 1.766069 GGAACCACACGCATGAAAAC 58.234 50.000 0.00 0.00 0.00 2.43
3365 5233 1.394697 GAACCACACGCATGAAAACG 58.605 50.000 0.00 0.00 0.00 3.60
3366 5234 0.593773 AACCACACGCATGAAAACGC 60.594 50.000 0.00 0.00 0.00 4.84
3367 5235 1.729131 CCACACGCATGAAAACGCC 60.729 57.895 0.00 0.00 0.00 5.68
3368 5236 2.074353 CACACGCATGAAAACGCCG 61.074 57.895 0.00 0.00 0.00 6.46
3370 5238 1.792057 CACGCATGAAAACGCCGTC 60.792 57.895 0.00 0.00 0.00 4.79
3371 5239 1.959226 ACGCATGAAAACGCCGTCT 60.959 52.632 0.00 0.00 0.00 4.18
3372 5240 1.225745 CGCATGAAAACGCCGTCTC 60.226 57.895 0.00 0.00 0.00 3.36
3374 5242 0.179215 GCATGAAAACGCCGTCTCAG 60.179 55.000 0.00 2.75 0.00 3.35
3376 5244 1.136252 CATGAAAACGCCGTCTCAGTG 60.136 52.381 7.84 3.88 0.00 3.66
3378 5246 0.232303 GAAAACGCCGTCTCAGTGTG 59.768 55.000 0.00 0.00 0.00 3.82
3379 5247 0.179094 AAAACGCCGTCTCAGTGTGA 60.179 50.000 0.00 0.00 0.00 3.58
3380 5248 0.033504 AAACGCCGTCTCAGTGTGAT 59.966 50.000 0.00 0.00 0.00 3.06
3381 5249 0.667487 AACGCCGTCTCAGTGTGATG 60.667 55.000 7.33 7.33 0.00 3.07
3404 5337 2.936919 TGCTCGAATGCCCTATCAAT 57.063 45.000 0.00 0.00 0.00 2.57
3413 5346 1.202758 TGCCCTATCAATTACGCTGGG 60.203 52.381 0.00 0.00 36.41 4.45
3414 5347 1.071699 GCCCTATCAATTACGCTGGGA 59.928 52.381 0.00 0.00 35.40 4.37
3425 5358 0.953960 ACGCTGGGACGAATGGTTTC 60.954 55.000 0.00 0.00 36.70 2.78
3427 5360 1.463674 GCTGGGACGAATGGTTTCAT 58.536 50.000 0.00 0.00 34.56 2.57
3469 5406 6.607689 TGAAATATGTGAAAAGTAAGCCACG 58.392 36.000 0.00 0.00 32.58 4.94
3481 5418 3.702045 AGTAAGCCACGAAGCTATCTCTT 59.298 43.478 4.44 0.00 44.11 2.85
3486 5423 3.795150 GCCACGAAGCTATCTCTTCAGAG 60.795 52.174 0.00 0.00 41.84 3.35
3490 5427 4.461081 ACGAAGCTATCTCTTCAGAGTTGT 59.539 41.667 3.73 0.00 41.84 3.32
3503 5440 2.227388 CAGAGTTGTGGCTTCAACCATC 59.773 50.000 17.41 11.95 45.90 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
693 700 2.024176 TGCTTTCGGGAAGTGCTATC 57.976 50.000 0.00 0.00 37.69 2.08
711 718 8.270799 CAGTTTCATCACATAAAGTTGCTTTTG 58.729 33.333 0.00 2.11 35.21 2.44
712 719 7.981225 ACAGTTTCATCACATAAAGTTGCTTTT 59.019 29.630 0.00 0.00 35.21 2.27
713 720 7.491682 ACAGTTTCATCACATAAAGTTGCTTT 58.508 30.769 0.00 0.00 37.46 3.51
714 721 7.042797 ACAGTTTCATCACATAAAGTTGCTT 57.957 32.000 0.00 0.00 0.00 3.91
715 722 6.639632 ACAGTTTCATCACATAAAGTTGCT 57.360 33.333 0.00 0.00 0.00 3.91
716 723 7.097342 CAACAGTTTCATCACATAAAGTTGC 57.903 36.000 0.00 0.00 0.00 4.17
717 724 6.696583 TGCAACAGTTTCATCACATAAAGTTG 59.303 34.615 0.00 0.00 36.60 3.16
718 725 6.804677 TGCAACAGTTTCATCACATAAAGTT 58.195 32.000 0.00 0.00 0.00 2.66
719 726 6.389830 TGCAACAGTTTCATCACATAAAGT 57.610 33.333 0.00 0.00 0.00 2.66
720 727 8.239314 ACTATGCAACAGTTTCATCACATAAAG 58.761 33.333 1.27 0.00 0.00 1.85
721 728 8.109705 ACTATGCAACAGTTTCATCACATAAA 57.890 30.769 1.27 0.00 0.00 1.40
722 729 7.390162 TGACTATGCAACAGTTTCATCACATAA 59.610 33.333 1.27 0.00 0.00 1.90
723 730 6.878389 TGACTATGCAACAGTTTCATCACATA 59.122 34.615 1.27 0.00 0.00 2.29
724 731 5.706833 TGACTATGCAACAGTTTCATCACAT 59.293 36.000 1.27 0.00 0.00 3.21
725 732 5.062528 TGACTATGCAACAGTTTCATCACA 58.937 37.500 1.27 0.00 0.00 3.58
726 733 5.611796 TGACTATGCAACAGTTTCATCAC 57.388 39.130 1.27 0.00 0.00 3.06
727 734 7.105588 ACTATGACTATGCAACAGTTTCATCA 58.894 34.615 1.27 0.00 0.00 3.07
728 735 7.545362 ACTATGACTATGCAACAGTTTCATC 57.455 36.000 1.27 0.00 0.00 2.92
729 736 7.928307 AACTATGACTATGCAACAGTTTCAT 57.072 32.000 3.79 3.79 0.00 2.57
730 737 7.744087 AAACTATGACTATGCAACAGTTTCA 57.256 32.000 5.86 1.73 31.04 2.69
754 761 6.580788 TGCACAGATTCAGAAAATGGAAAAA 58.419 32.000 0.00 0.00 0.00 1.94
755 762 6.159299 TGCACAGATTCAGAAAATGGAAAA 57.841 33.333 0.00 0.00 0.00 2.29
756 763 5.787953 TGCACAGATTCAGAAAATGGAAA 57.212 34.783 0.00 0.00 0.00 3.13
757 764 5.988310 ATGCACAGATTCAGAAAATGGAA 57.012 34.783 0.00 0.00 0.00 3.53
758 765 5.716094 CAATGCACAGATTCAGAAAATGGA 58.284 37.500 0.00 0.00 0.00 3.41
759 766 4.328983 GCAATGCACAGATTCAGAAAATGG 59.671 41.667 0.00 0.00 0.00 3.16
760 767 5.168569 AGCAATGCACAGATTCAGAAAATG 58.831 37.500 8.35 0.00 0.00 2.32
761 768 5.401531 AGCAATGCACAGATTCAGAAAAT 57.598 34.783 8.35 0.00 0.00 1.82
762 769 4.859304 AGCAATGCACAGATTCAGAAAA 57.141 36.364 8.35 0.00 0.00 2.29
763 770 4.761227 TGTAGCAATGCACAGATTCAGAAA 59.239 37.500 8.35 0.00 0.00 2.52
764 771 4.325972 TGTAGCAATGCACAGATTCAGAA 58.674 39.130 8.35 0.00 0.00 3.02
765 772 3.941573 TGTAGCAATGCACAGATTCAGA 58.058 40.909 8.35 0.00 0.00 3.27
766 773 4.690184 TTGTAGCAATGCACAGATTCAG 57.310 40.909 8.35 0.00 0.00 3.02
767 774 5.647225 TGTATTGTAGCAATGCACAGATTCA 59.353 36.000 8.35 7.68 0.00 2.57
768 775 6.122850 TGTATTGTAGCAATGCACAGATTC 57.877 37.500 8.35 5.68 0.00 2.52
769 776 5.649395 ACTGTATTGTAGCAATGCACAGATT 59.351 36.000 22.28 9.97 36.34 2.40
770 777 5.188434 ACTGTATTGTAGCAATGCACAGAT 58.812 37.500 22.28 14.51 36.34 2.90
771 778 4.578871 ACTGTATTGTAGCAATGCACAGA 58.421 39.130 22.28 10.01 36.34 3.41
772 779 4.952262 ACTGTATTGTAGCAATGCACAG 57.048 40.909 16.29 16.29 38.26 3.66
773 780 5.473162 AGAAACTGTATTGTAGCAATGCACA 59.527 36.000 8.35 7.20 0.00 4.57
774 781 5.942872 AGAAACTGTATTGTAGCAATGCAC 58.057 37.500 8.35 4.43 0.00 4.57
775 782 6.183360 CGTAGAAACTGTATTGTAGCAATGCA 60.183 38.462 8.35 11.04 0.00 3.96
776 783 6.183360 ACGTAGAAACTGTATTGTAGCAATGC 60.183 38.462 0.00 0.00 0.00 3.56
777 784 7.290857 ACGTAGAAACTGTATTGTAGCAATG 57.709 36.000 4.78 0.00 0.00 2.82
778 785 7.900782 AACGTAGAAACTGTATTGTAGCAAT 57.099 32.000 0.00 0.00 0.00 3.56
779 786 8.298854 TCTAACGTAGAAACTGTATTGTAGCAA 58.701 33.333 0.00 0.00 0.00 3.91
780 787 7.819644 TCTAACGTAGAAACTGTATTGTAGCA 58.180 34.615 0.00 0.00 0.00 3.49
781 788 8.679288 TTCTAACGTAGAAACTGTATTGTAGC 57.321 34.615 0.00 0.00 41.53 3.58
822 829 9.621629 TGAGTTGTCTAATAAGGTTTCAAAAGA 57.378 29.630 0.00 0.00 0.00 2.52
826 833 8.626526 GGTTTGAGTTGTCTAATAAGGTTTCAA 58.373 33.333 0.00 0.00 0.00 2.69
827 834 7.996644 AGGTTTGAGTTGTCTAATAAGGTTTCA 59.003 33.333 0.00 0.00 0.00 2.69
828 835 8.392372 AGGTTTGAGTTGTCTAATAAGGTTTC 57.608 34.615 0.00 0.00 0.00 2.78
829 836 8.218488 AGAGGTTTGAGTTGTCTAATAAGGTTT 58.782 33.333 0.00 0.00 0.00 3.27
830 837 7.746703 AGAGGTTTGAGTTGTCTAATAAGGTT 58.253 34.615 0.00 0.00 0.00 3.50
831 838 7.317722 AGAGGTTTGAGTTGTCTAATAAGGT 57.682 36.000 0.00 0.00 0.00 3.50
832 839 8.622948 AAAGAGGTTTGAGTTGTCTAATAAGG 57.377 34.615 0.00 0.00 0.00 2.69
833 840 9.495572 AGAAAGAGGTTTGAGTTGTCTAATAAG 57.504 33.333 0.00 0.00 0.00 1.73
834 841 9.273016 CAGAAAGAGGTTTGAGTTGTCTAATAA 57.727 33.333 0.00 0.00 0.00 1.40
835 842 8.647796 TCAGAAAGAGGTTTGAGTTGTCTAATA 58.352 33.333 0.00 0.00 0.00 0.98
836 843 7.509546 TCAGAAAGAGGTTTGAGTTGTCTAAT 58.490 34.615 0.00 0.00 0.00 1.73
837 844 6.884832 TCAGAAAGAGGTTTGAGTTGTCTAA 58.115 36.000 0.00 0.00 0.00 2.10
838 845 6.479972 TCAGAAAGAGGTTTGAGTTGTCTA 57.520 37.500 0.00 0.00 0.00 2.59
839 846 5.359194 TCAGAAAGAGGTTTGAGTTGTCT 57.641 39.130 0.00 0.00 0.00 3.41
840 847 6.094186 AGTTTCAGAAAGAGGTTTGAGTTGTC 59.906 38.462 0.00 0.00 0.00 3.18
841 848 5.946377 AGTTTCAGAAAGAGGTTTGAGTTGT 59.054 36.000 0.00 0.00 0.00 3.32
842 849 6.442513 AGTTTCAGAAAGAGGTTTGAGTTG 57.557 37.500 0.00 0.00 0.00 3.16
843 850 6.659242 TCAAGTTTCAGAAAGAGGTTTGAGTT 59.341 34.615 0.00 0.00 0.00 3.01
844 851 6.180472 TCAAGTTTCAGAAAGAGGTTTGAGT 58.820 36.000 0.00 0.00 0.00 3.41
845 852 6.540189 TCTCAAGTTTCAGAAAGAGGTTTGAG 59.460 38.462 17.65 17.65 38.49 3.02
846 853 6.414732 TCTCAAGTTTCAGAAAGAGGTTTGA 58.585 36.000 9.61 7.95 0.00 2.69
847 854 6.683974 TCTCAAGTTTCAGAAAGAGGTTTG 57.316 37.500 9.61 4.99 0.00 2.93
848 855 7.056635 TCATCTCAAGTTTCAGAAAGAGGTTT 58.943 34.615 9.61 0.00 0.00 3.27
849 856 6.595682 TCATCTCAAGTTTCAGAAAGAGGTT 58.404 36.000 9.61 0.00 0.00 3.50
850 857 6.179906 TCATCTCAAGTTTCAGAAAGAGGT 57.820 37.500 9.61 1.93 0.00 3.85
851 858 7.389884 TGAATCATCTCAAGTTTCAGAAAGAGG 59.610 37.037 9.61 0.46 0.00 3.69
852 859 8.320396 TGAATCATCTCAAGTTTCAGAAAGAG 57.680 34.615 0.00 0.24 0.00 2.85
853 860 8.152898 TCTGAATCATCTCAAGTTTCAGAAAGA 58.847 33.333 10.34 0.00 45.48 2.52
854 861 8.320396 TCTGAATCATCTCAAGTTTCAGAAAG 57.680 34.615 10.34 0.00 45.48 2.62
857 864 6.013898 AGGTCTGAATCATCTCAAGTTTCAGA 60.014 38.462 9.03 9.03 45.97 3.27
858 865 6.171921 AGGTCTGAATCATCTCAAGTTTCAG 58.828 40.000 4.93 4.93 42.84 3.02
859 866 6.119240 AGGTCTGAATCATCTCAAGTTTCA 57.881 37.500 0.00 0.00 0.00 2.69
860 867 7.446001 AAAGGTCTGAATCATCTCAAGTTTC 57.554 36.000 0.00 0.00 0.00 2.78
861 868 7.830099 AAAAGGTCTGAATCATCTCAAGTTT 57.170 32.000 0.00 0.00 0.00 2.66
862 869 7.830099 AAAAAGGTCTGAATCATCTCAAGTT 57.170 32.000 0.00 0.00 0.00 2.66
889 896 9.793259 ATAGTCTGAATTGTCTCCAGTTTTAAA 57.207 29.630 0.00 0.00 0.00 1.52
890 897 9.793259 AATAGTCTGAATTGTCTCCAGTTTTAA 57.207 29.630 0.00 0.00 0.00 1.52
915 922 3.369471 CCTCGGCTCAGTCCAGAAAATAA 60.369 47.826 0.00 0.00 0.00 1.40
918 925 0.321671 CCTCGGCTCAGTCCAGAAAA 59.678 55.000 0.00 0.00 0.00 2.29
922 929 3.465403 CCCCTCGGCTCAGTCCAG 61.465 72.222 0.00 0.00 0.00 3.86
927 934 1.364171 CGTTATCCCCTCGGCTCAG 59.636 63.158 0.00 0.00 0.00 3.35
981 988 2.892425 GCGCCGATGTTGGGAGAG 60.892 66.667 0.00 0.00 0.00 3.20
983 990 4.776322 TGGCGCCGATGTTGGGAG 62.776 66.667 23.90 0.00 0.00 4.30
1085 1116 4.729918 CCCTGAGCACCACCAGCC 62.730 72.222 0.00 0.00 0.00 4.85
1306 1361 0.603065 TAAGCAGCAGCAACGAGAGA 59.397 50.000 3.17 0.00 45.49 3.10
1308 1363 1.733912 CATTAAGCAGCAGCAACGAGA 59.266 47.619 3.17 0.00 45.49 4.04
1322 1377 4.184629 ACTAGACAAGCGAAGGCATTAAG 58.815 43.478 0.00 0.00 43.41 1.85
1323 1378 4.181578 GACTAGACAAGCGAAGGCATTAA 58.818 43.478 0.00 0.00 43.41 1.40
1344 1406 0.899019 TTCATCGAACACCATCCGGA 59.101 50.000 6.61 6.61 35.59 5.14
1361 1423 1.177401 GGAGAACTGTGGGGCAATTC 58.823 55.000 0.00 0.00 33.88 2.17
1375 1437 2.852495 GATGGCGCTTGACCGGAGAA 62.852 60.000 9.46 0.00 0.00 2.87
1412 1478 2.158959 CGATCACCGAACCAGCGAC 61.159 63.158 0.00 0.00 41.76 5.19
1418 1484 0.373716 GATTGCACGATCACCGAACC 59.626 55.000 0.00 0.00 41.76 3.62
1421 1487 0.530288 TCTGATTGCACGATCACCGA 59.470 50.000 0.00 0.00 41.76 4.69
1425 1491 2.684374 CCCATTTCTGATTGCACGATCA 59.316 45.455 1.28 1.28 34.96 2.92
1436 1502 2.309755 AGCTGAATGGTCCCATTTCTGA 59.690 45.455 12.62 0.00 45.50 3.27
1452 1518 6.371809 ACATTTTTAACAAGTCGAAGCTGA 57.628 33.333 0.00 0.00 0.00 4.26
1455 1521 6.806120 ACAACATTTTTAACAAGTCGAAGC 57.194 33.333 0.00 0.00 0.00 3.86
1490 2063 6.314152 GGGACATTGTAAAAGAGCTAGAGAAC 59.686 42.308 0.00 0.00 0.00 3.01
1497 2070 4.373156 ACAGGGACATTGTAAAAGAGCT 57.627 40.909 0.00 0.00 0.00 4.09
1498 2071 5.453567 AAACAGGGACATTGTAAAAGAGC 57.546 39.130 0.00 0.00 0.00 4.09
1499 2072 5.334879 CGGAAACAGGGACATTGTAAAAGAG 60.335 44.000 0.00 0.00 0.00 2.85
1501 2074 4.517453 TCGGAAACAGGGACATTGTAAAAG 59.483 41.667 0.00 0.00 0.00 2.27
1512 3053 1.475280 CTACGATGTCGGAAACAGGGA 59.525 52.381 7.38 0.00 42.37 4.20
1513 3054 1.922570 CTACGATGTCGGAAACAGGG 58.077 55.000 7.38 0.00 42.37 4.45
1515 3056 2.186076 GAGCTACGATGTCGGAAACAG 58.814 52.381 7.38 0.00 42.37 3.16
1529 3070 1.463831 TGAGTGAACTCGACGAGCTAC 59.536 52.381 24.38 18.92 45.72 3.58
1532 3073 1.053811 GTTGAGTGAACTCGACGAGC 58.946 55.000 24.38 9.99 44.67 5.03
1538 3079 1.269102 ACGGTCAGTTGAGTGAACTCG 60.269 52.381 6.01 0.00 43.52 4.18
1545 3113 2.040178 AGAAGGAACGGTCAGTTGAGT 58.960 47.619 1.31 0.00 44.35 3.41
1552 3120 2.357034 GCGCAGAAGGAACGGTCA 60.357 61.111 0.30 0.00 0.00 4.02
1556 3124 1.438710 CAAACGCGCAGAAGGAACG 60.439 57.895 5.73 0.00 0.00 3.95
1568 3344 1.439679 AGCTAACTGGCTACAAACGC 58.560 50.000 0.00 0.00 41.16 4.84
1635 3414 5.453567 AGGAAGAAGGTAAAACATGCAAC 57.546 39.130 0.00 0.00 0.00 4.17
1636 3415 6.293735 CGTTAGGAAGAAGGTAAAACATGCAA 60.294 38.462 0.00 0.00 0.00 4.08
1655 3434 4.630111 TGTAAAACACCCTACACGTTAGG 58.370 43.478 13.68 13.68 34.52 2.69
1675 3455 2.237392 GCTCCACCCTAAGAAGTGATGT 59.763 50.000 0.00 0.00 36.01 3.06
1679 3459 0.984230 TGGCTCCACCCTAAGAAGTG 59.016 55.000 0.00 0.00 37.83 3.16
1757 3538 1.386533 TCTCGTTGAGGATACCCGAC 58.613 55.000 0.00 0.00 37.58 4.79
1763 3544 3.572682 ACTGTGTGTTCTCGTTGAGGATA 59.427 43.478 0.00 0.00 0.00 2.59
1859 3640 4.221482 AGAATTCTCCCTTTGCATGAAACC 59.779 41.667 0.88 0.00 0.00 3.27
1991 3772 1.001633 ACCTTGTTCGAATAGCACGGT 59.998 47.619 0.00 5.35 36.32 4.83
2096 3877 1.533731 TCAAATCCTTTGAACCGCGTC 59.466 47.619 4.92 0.00 45.94 5.19
2183 3964 6.256975 TGAAATGCACGGTATCAGTAATGTAC 59.743 38.462 0.00 0.00 0.00 2.90
2240 4021 2.026905 GCCTGACCACCTTCAACCAAA 61.027 52.381 0.00 0.00 0.00 3.28
2285 4066 8.506168 TTGAGGAAGTAACAAATGGATATGTC 57.494 34.615 0.00 0.00 0.00 3.06
2412 4194 2.917971 CGAGTTGGACGATGAAGAGAAC 59.082 50.000 0.00 0.00 0.00 3.01
2522 4304 3.976701 AATCGCCCGTCTTGCCCAG 62.977 63.158 0.00 0.00 0.00 4.45
2548 4330 0.378257 CAAACTCCATTCCCGATGCG 59.622 55.000 0.00 0.00 34.25 4.73
2763 4545 6.379386 GTTACCTTTGTTTGCTCCAAGATAC 58.621 40.000 0.00 0.00 0.00 2.24
2800 4583 3.785486 TCACACGAATATCAGAAGCTGG 58.215 45.455 0.00 0.00 31.51 4.85
2805 4588 6.403527 CCAAGCAAATCACACGAATATCAGAA 60.404 38.462 0.00 0.00 0.00 3.02
2807 4590 5.268544 CCAAGCAAATCACACGAATATCAG 58.731 41.667 0.00 0.00 0.00 2.90
2812 4595 1.888512 AGCCAAGCAAATCACACGAAT 59.111 42.857 0.00 0.00 0.00 3.34
3000 4807 1.051008 ATATGAGAGCATCACGCCCA 58.949 50.000 0.00 0.00 41.91 5.36
3006 4813 6.730507 TCCCCTATTTGTATATGAGAGCATCA 59.269 38.462 0.00 0.00 43.70 3.07
3012 4819 9.793259 GACAAAATCCCCTATTTGTATATGAGA 57.207 33.333 4.08 0.00 46.60 3.27
3015 4822 9.573166 TCTGACAAAATCCCCTATTTGTATATG 57.427 33.333 4.08 0.00 46.60 1.78
3057 4864 9.512588 TCTTATATTAGTTTACGGAGGGAGTAG 57.487 37.037 0.00 0.00 0.00 2.57
3058 4865 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3059 4866 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
3060 4867 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
3061 4868 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
3062 4869 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
3063 4870 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
3126 4933 8.697292 GGATCTTGTATACTTCCTCTGTAAACT 58.303 37.037 4.17 0.00 0.00 2.66
3127 4934 7.648510 CGGATCTTGTATACTTCCTCTGTAAAC 59.351 40.741 4.17 0.00 0.00 2.01
3128 4935 7.683704 GCGGATCTTGTATACTTCCTCTGTAAA 60.684 40.741 4.17 0.00 0.00 2.01
3129 4936 6.238953 GCGGATCTTGTATACTTCCTCTGTAA 60.239 42.308 4.17 0.00 0.00 2.41
3130 4937 5.241064 GCGGATCTTGTATACTTCCTCTGTA 59.759 44.000 4.17 0.00 0.00 2.74
3131 4938 4.038162 GCGGATCTTGTATACTTCCTCTGT 59.962 45.833 4.17 0.00 0.00 3.41
3132 4939 4.038042 TGCGGATCTTGTATACTTCCTCTG 59.962 45.833 4.17 3.11 0.00 3.35
3133 4940 4.215908 TGCGGATCTTGTATACTTCCTCT 58.784 43.478 4.17 0.00 0.00 3.69
3134 4941 4.585955 TGCGGATCTTGTATACTTCCTC 57.414 45.455 4.17 1.97 0.00 3.71
3135 4942 5.552870 AATGCGGATCTTGTATACTTCCT 57.447 39.130 4.17 0.00 0.00 3.36
3136 4943 5.758296 TCAAATGCGGATCTTGTATACTTCC 59.242 40.000 4.17 4.85 0.00 3.46
3137 4944 6.564873 GCTCAAATGCGGATCTTGTATACTTC 60.565 42.308 4.17 0.00 0.00 3.01
3138 4945 5.237344 GCTCAAATGCGGATCTTGTATACTT 59.763 40.000 4.17 0.00 0.00 2.24
3139 4946 4.752101 GCTCAAATGCGGATCTTGTATACT 59.248 41.667 4.17 0.00 0.00 2.12
3140 4947 4.511454 TGCTCAAATGCGGATCTTGTATAC 59.489 41.667 0.00 0.00 35.36 1.47
3144 4951 1.825090 TGCTCAAATGCGGATCTTGT 58.175 45.000 0.00 0.00 35.36 3.16
3158 4965 3.896888 ACTTGGGTTGAATCATTTGCTCA 59.103 39.130 0.00 0.00 0.00 4.26
3160 4967 3.555586 GCACTTGGGTTGAATCATTTGCT 60.556 43.478 0.00 0.00 0.00 3.91
3174 4982 1.156736 CAGTAAAGGACGCACTTGGG 58.843 55.000 0.00 0.00 0.00 4.12
3179 4987 1.797025 AGAAGCAGTAAAGGACGCAC 58.203 50.000 0.00 0.00 32.26 5.34
3183 4991 5.408909 GTCTTTGGTAGAAGCAGTAAAGGAC 59.591 44.000 0.00 0.00 33.81 3.85
3185 4993 5.305585 TGTCTTTGGTAGAAGCAGTAAAGG 58.694 41.667 0.00 0.00 33.81 3.11
3200 5008 4.572985 TCAAGTCAGCAAATGTCTTTGG 57.427 40.909 0.78 0.00 41.72 3.28
3201 5009 4.384846 GCATCAAGTCAGCAAATGTCTTTG 59.615 41.667 0.00 0.00 43.81 2.77
3202 5010 4.553323 GCATCAAGTCAGCAAATGTCTTT 58.447 39.130 0.00 0.00 35.46 2.52
3206 5014 2.241160 TGGCATCAAGTCAGCAAATGT 58.759 42.857 0.00 0.00 0.00 2.71
3216 5024 4.594920 AGCTACTATACCATGGCATCAAGT 59.405 41.667 13.04 8.61 0.00 3.16
3219 5027 4.021104 GTCAGCTACTATACCATGGCATCA 60.021 45.833 13.04 0.00 0.00 3.07
3222 5030 3.321968 CAGTCAGCTACTATACCATGGCA 59.678 47.826 13.04 0.00 35.76 4.92
3223 5031 3.306364 CCAGTCAGCTACTATACCATGGC 60.306 52.174 13.04 0.00 35.76 4.40
3224 5032 4.152647 TCCAGTCAGCTACTATACCATGG 58.847 47.826 11.19 11.19 35.76 3.66
3225 5033 4.219507 CCTCCAGTCAGCTACTATACCATG 59.780 50.000 0.00 0.00 35.76 3.66
3226 5034 4.106502 TCCTCCAGTCAGCTACTATACCAT 59.893 45.833 0.00 0.00 35.76 3.55
3227 5035 3.462205 TCCTCCAGTCAGCTACTATACCA 59.538 47.826 0.00 0.00 35.76 3.25
3228 5036 3.822167 GTCCTCCAGTCAGCTACTATACC 59.178 52.174 0.00 0.00 35.76 2.73
3229 5037 3.499157 CGTCCTCCAGTCAGCTACTATAC 59.501 52.174 0.00 0.00 35.76 1.47
3230 5038 3.136077 ACGTCCTCCAGTCAGCTACTATA 59.864 47.826 0.00 0.00 35.76 1.31
3231 5039 2.092321 ACGTCCTCCAGTCAGCTACTAT 60.092 50.000 0.00 0.00 35.76 2.12
3232 5040 1.281287 ACGTCCTCCAGTCAGCTACTA 59.719 52.381 0.00 0.00 35.76 1.82
3233 5041 0.038455 ACGTCCTCCAGTCAGCTACT 59.962 55.000 0.00 0.00 39.81 2.57
3234 5042 1.671845 CTACGTCCTCCAGTCAGCTAC 59.328 57.143 0.00 0.00 0.00 3.58
3235 5043 1.408405 CCTACGTCCTCCAGTCAGCTA 60.408 57.143 0.00 0.00 0.00 3.32
3236 5044 0.681564 CCTACGTCCTCCAGTCAGCT 60.682 60.000 0.00 0.00 0.00 4.24
3237 5045 1.668101 CCCTACGTCCTCCAGTCAGC 61.668 65.000 0.00 0.00 0.00 4.26
3238 5046 0.034380 TCCCTACGTCCTCCAGTCAG 60.034 60.000 0.00 0.00 0.00 3.51
3239 5047 0.629596 ATCCCTACGTCCTCCAGTCA 59.370 55.000 0.00 0.00 0.00 3.41
3240 5048 1.682323 GAATCCCTACGTCCTCCAGTC 59.318 57.143 0.00 0.00 0.00 3.51
3241 5049 1.688627 GGAATCCCTACGTCCTCCAGT 60.689 57.143 0.00 0.00 0.00 4.00
3242 5050 1.041437 GGAATCCCTACGTCCTCCAG 58.959 60.000 0.00 0.00 0.00 3.86
3243 5051 0.754217 CGGAATCCCTACGTCCTCCA 60.754 60.000 0.00 0.00 0.00 3.86
3244 5052 1.461911 CCGGAATCCCTACGTCCTCC 61.462 65.000 0.00 0.00 0.00 4.30
3245 5053 0.466922 TCCGGAATCCCTACGTCCTC 60.467 60.000 0.00 0.00 0.00 3.71
3246 5054 0.032813 TTCCGGAATCCCTACGTCCT 60.033 55.000 14.35 0.00 0.00 3.85
3247 5055 1.000618 GATTCCGGAATCCCTACGTCC 59.999 57.143 37.03 16.53 40.90 4.79
3248 5056 2.435533 GATTCCGGAATCCCTACGTC 57.564 55.000 37.03 18.20 40.90 4.34
3275 5083 2.351157 GCACAATGTTGGAGCTGAACTC 60.351 50.000 0.00 0.00 45.45 3.01
3278 5086 1.689984 TGCACAATGTTGGAGCTGAA 58.310 45.000 0.00 0.00 35.34 3.02
3295 5103 3.451141 TTGGGTTGTGTCTTCATTTGC 57.549 42.857 0.00 0.00 0.00 3.68
3298 5106 4.728772 TCAGATTGGGTTGTGTCTTCATT 58.271 39.130 0.00 0.00 0.00 2.57
3299 5107 4.371624 TCAGATTGGGTTGTGTCTTCAT 57.628 40.909 0.00 0.00 0.00 2.57
3302 5110 4.371624 TCATCAGATTGGGTTGTGTCTT 57.628 40.909 0.00 0.00 0.00 3.01
3317 5125 5.954296 GGTATTCACCCATTGATCATCAG 57.046 43.478 0.00 0.00 39.11 2.90
3331 5199 0.393402 GGTTCCGGTGGGGTATTCAC 60.393 60.000 0.00 0.00 37.00 3.18
3341 5209 2.668212 ATGCGTGTGGTTCCGGTG 60.668 61.111 0.00 0.00 0.00 4.94
3347 5215 0.593773 GCGTTTTCATGCGTGTGGTT 60.594 50.000 5.68 0.00 0.00 3.67
3349 5217 1.729131 GGCGTTTTCATGCGTGTGG 60.729 57.895 5.68 0.00 35.51 4.17
3350 5218 2.074353 CGGCGTTTTCATGCGTGTG 61.074 57.895 5.68 0.00 35.51 3.82
3351 5219 2.251075 CGGCGTTTTCATGCGTGT 59.749 55.556 5.68 0.00 35.51 4.49
3352 5220 1.792057 GACGGCGTTTTCATGCGTG 60.792 57.895 16.19 0.00 35.51 5.34
3353 5221 1.897398 GAGACGGCGTTTTCATGCGT 61.897 55.000 16.19 0.00 35.51 5.24
3354 5222 1.225745 GAGACGGCGTTTTCATGCG 60.226 57.895 16.19 0.00 35.51 4.73
3355 5223 0.179215 CTGAGACGGCGTTTTCATGC 60.179 55.000 22.46 6.59 0.00 4.06
3356 5224 1.136252 CACTGAGACGGCGTTTTCATG 60.136 52.381 22.46 18.51 0.00 3.07
3357 5225 1.148310 CACTGAGACGGCGTTTTCAT 58.852 50.000 22.46 13.25 0.00 2.57
3358 5226 0.179094 ACACTGAGACGGCGTTTTCA 60.179 50.000 16.19 19.59 0.00 2.69
3361 5229 0.033504 ATCACACTGAGACGGCGTTT 59.966 50.000 16.19 8.96 0.00 3.60
3362 5230 0.667487 CATCACACTGAGACGGCGTT 60.667 55.000 16.19 3.90 0.00 4.84
3363 5231 1.080501 CATCACACTGAGACGGCGT 60.081 57.895 14.65 14.65 0.00 5.68
3364 5232 0.799917 CTCATCACACTGAGACGGCG 60.800 60.000 4.80 4.80 44.48 6.46
3365 5233 0.528017 TCTCATCACACTGAGACGGC 59.472 55.000 0.00 0.00 45.13 5.68
3370 5238 2.098770 TCGAGCATCTCATCACACTGAG 59.901 50.000 0.00 0.00 43.33 3.35
3371 5239 2.094675 TCGAGCATCTCATCACACTGA 58.905 47.619 0.00 0.00 0.00 3.41
3372 5240 2.573941 TCGAGCATCTCATCACACTG 57.426 50.000 0.00 0.00 0.00 3.66
3374 5242 2.033065 GCATTCGAGCATCTCATCACAC 60.033 50.000 0.00 0.00 0.00 3.82
3376 5244 1.530293 GGCATTCGAGCATCTCATCAC 59.470 52.381 0.00 0.00 35.83 3.06
3378 5246 1.155042 GGGCATTCGAGCATCTCATC 58.845 55.000 0.00 0.00 35.83 2.92
3379 5247 0.763652 AGGGCATTCGAGCATCTCAT 59.236 50.000 0.00 0.00 35.83 2.90
3380 5248 1.413118 TAGGGCATTCGAGCATCTCA 58.587 50.000 0.00 0.00 35.83 3.27
3381 5249 2.028658 TGATAGGGCATTCGAGCATCTC 60.029 50.000 0.00 0.00 35.83 2.75
3404 5337 0.322322 AACCATTCGTCCCAGCGTAA 59.678 50.000 0.00 0.00 0.00 3.18
3413 5346 7.930513 AAAGAAGAAAATGAAACCATTCGTC 57.069 32.000 0.00 0.00 38.46 4.20
3414 5347 8.197439 AGAAAAGAAGAAAATGAAACCATTCGT 58.803 29.630 0.00 0.00 38.46 3.85
3457 5390 4.160626 AGAGATAGCTTCGTGGCTTACTTT 59.839 41.667 9.71 4.03 42.97 2.66
3458 5391 3.702045 AGAGATAGCTTCGTGGCTTACTT 59.298 43.478 9.71 0.00 42.97 2.24
3460 5393 3.719173 AGAGATAGCTTCGTGGCTTAC 57.281 47.619 9.71 5.65 42.97 2.34
3461 5394 3.699538 TGAAGAGATAGCTTCGTGGCTTA 59.300 43.478 9.71 0.00 45.62 3.09
3464 5397 2.099921 TCTGAAGAGATAGCTTCGTGGC 59.900 50.000 0.00 0.00 45.62 5.01
3465 5398 3.380004 ACTCTGAAGAGATAGCTTCGTGG 59.620 47.826 14.20 0.00 45.62 4.94
3466 5399 4.630894 ACTCTGAAGAGATAGCTTCGTG 57.369 45.455 14.20 0.00 45.62 4.35
3469 5406 5.108517 CCACAACTCTGAAGAGATAGCTTC 58.891 45.833 14.20 0.00 44.74 3.86
3474 5411 4.528206 TGAAGCCACAACTCTGAAGAGATA 59.472 41.667 14.20 0.00 44.74 1.98
3481 5418 1.211703 TGGTTGAAGCCACAACTCTGA 59.788 47.619 18.42 3.67 46.17 3.27
3486 5423 5.391312 AAATAGATGGTTGAAGCCACAAC 57.609 39.130 13.07 13.07 46.20 3.32
3490 5427 7.831690 TGTTACATAAATAGATGGTTGAAGCCA 59.168 33.333 0.00 0.00 43.48 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.