Multiple sequence alignment - TraesCS4A01G275400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G275400 chr4A 100.000 3360 0 0 1 3360 584536677 584540036 0.000000e+00 6205
1 TraesCS4A01G275400 chr4D 92.824 2383 121 25 602 2947 16020354 16022723 0.000000e+00 3408
2 TraesCS4A01G275400 chr4D 85.377 424 37 7 2940 3360 16023564 16023965 1.860000e-112 416
3 TraesCS4A01G275400 chr4B 89.187 2423 165 41 774 3135 27865486 27867872 0.000000e+00 2933
4 TraesCS4A01G275400 chr1A 85.996 2078 165 67 1315 3360 52533427 52531444 0.000000e+00 2109
5 TraesCS4A01G275400 chr2A 85.329 1445 114 46 1321 2736 16327082 16328457 0.000000e+00 1404
6 TraesCS4A01G275400 chr1D 90.204 245 21 3 2534 2778 24412483 24412724 1.950000e-82 316
7 TraesCS4A01G275400 chr7A 77.966 236 38 11 2940 3168 196203085 196202857 5.850000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G275400 chr4A 584536677 584540036 3359 False 6205 6205 100.0000 1 3360 1 chr4A.!!$F1 3359
1 TraesCS4A01G275400 chr4D 16020354 16023965 3611 False 1912 3408 89.1005 602 3360 2 chr4D.!!$F1 2758
2 TraesCS4A01G275400 chr4B 27865486 27867872 2386 False 2933 2933 89.1870 774 3135 1 chr4B.!!$F1 2361
3 TraesCS4A01G275400 chr1A 52531444 52533427 1983 True 2109 2109 85.9960 1315 3360 1 chr1A.!!$R1 2045
4 TraesCS4A01G275400 chr2A 16327082 16328457 1375 False 1404 1404 85.3290 1321 2736 1 chr2A.!!$F1 1415

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.036732 ACGAGAGGGCATTTGCTTGA 59.963 50.0 2.12 0.0 41.70 3.02 F
330 331 0.038435 TTGCGTTCATGGTGGCATTG 60.038 50.0 6.36 0.0 35.03 2.82 F
439 440 0.039165 CGTGGCCTTTTCCTTTGAGC 60.039 55.0 3.32 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1534 1562 0.037232 GGAGGAAGTCGTTGGTCTGG 60.037 60.000 0.0 0.0 0.0 3.86 R
2324 2387 4.218417 TCTTTATCAGCCAACAAGAAAGCC 59.782 41.667 0.0 0.0 0.0 4.35 R
2428 2491 4.267536 CAATCATCATCACACTCCCAACT 58.732 43.478 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.795688 CCCATGTGTCTATAGGGCATT 57.204 47.619 0.00 0.00 31.81 3.56
24 25 4.104383 CCCATGTGTCTATAGGGCATTT 57.896 45.455 0.00 0.00 31.81 2.32
25 26 4.473444 CCCATGTGTCTATAGGGCATTTT 58.527 43.478 0.00 0.00 31.81 1.82
26 27 4.895297 CCCATGTGTCTATAGGGCATTTTT 59.105 41.667 0.00 0.00 31.81 1.94
27 28 5.221303 CCCATGTGTCTATAGGGCATTTTTG 60.221 44.000 0.00 0.00 31.81 2.44
28 29 5.360714 CCATGTGTCTATAGGGCATTTTTGT 59.639 40.000 0.00 0.00 0.00 2.83
29 30 5.895636 TGTGTCTATAGGGCATTTTTGTG 57.104 39.130 0.00 0.00 0.00 3.33
30 31 5.321102 TGTGTCTATAGGGCATTTTTGTGT 58.679 37.500 0.00 0.00 0.00 3.72
31 32 5.182950 TGTGTCTATAGGGCATTTTTGTGTG 59.817 40.000 0.00 0.00 0.00 3.82
32 33 4.157656 TGTCTATAGGGCATTTTTGTGTGC 59.842 41.667 0.00 0.00 40.55 4.57
33 34 4.157656 GTCTATAGGGCATTTTTGTGTGCA 59.842 41.667 0.00 0.00 43.00 4.57
34 35 4.769488 TCTATAGGGCATTTTTGTGTGCAA 59.231 37.500 0.00 0.00 43.00 4.08
35 36 2.934886 AGGGCATTTTTGTGTGCAAT 57.065 40.000 0.00 0.00 43.00 3.56
36 37 2.769893 AGGGCATTTTTGTGTGCAATC 58.230 42.857 0.00 0.00 43.00 2.67
37 38 2.104451 AGGGCATTTTTGTGTGCAATCA 59.896 40.909 0.00 0.00 43.00 2.57
38 39 2.877168 GGGCATTTTTGTGTGCAATCAA 59.123 40.909 0.00 0.00 43.00 2.57
39 40 3.303924 GGGCATTTTTGTGTGCAATCAAC 60.304 43.478 4.61 0.00 43.00 3.18
40 41 3.560896 GGCATTTTTGTGTGCAATCAACT 59.439 39.130 4.61 0.00 43.00 3.16
41 42 4.749099 GGCATTTTTGTGTGCAATCAACTA 59.251 37.500 4.61 0.00 43.00 2.24
42 43 5.333263 GGCATTTTTGTGTGCAATCAACTAC 60.333 40.000 4.61 0.00 43.00 2.73
43 44 5.610124 GCATTTTTGTGTGCAATCAACTACG 60.610 40.000 4.61 0.00 40.94 3.51
44 45 4.884458 TTTTGTGTGCAATCAACTACGA 57.116 36.364 4.61 0.00 34.18 3.43
45 46 4.466567 TTTGTGTGCAATCAACTACGAG 57.533 40.909 4.61 0.00 34.18 4.18
46 47 3.378911 TGTGTGCAATCAACTACGAGA 57.621 42.857 0.00 0.00 0.00 4.04
47 48 3.317150 TGTGTGCAATCAACTACGAGAG 58.683 45.455 0.00 0.00 0.00 3.20
48 49 2.668457 GTGTGCAATCAACTACGAGAGG 59.332 50.000 0.00 0.00 0.00 3.69
49 50 2.271800 GTGCAATCAACTACGAGAGGG 58.728 52.381 0.00 0.00 0.00 4.30
50 51 1.291132 GCAATCAACTACGAGAGGGC 58.709 55.000 0.00 0.00 0.00 5.19
51 52 1.405526 GCAATCAACTACGAGAGGGCA 60.406 52.381 0.00 0.00 0.00 5.36
52 53 2.743183 GCAATCAACTACGAGAGGGCAT 60.743 50.000 0.00 0.00 0.00 4.40
53 54 3.535561 CAATCAACTACGAGAGGGCATT 58.464 45.455 0.00 0.00 0.00 3.56
54 55 3.914426 ATCAACTACGAGAGGGCATTT 57.086 42.857 0.00 0.00 0.00 2.32
55 56 2.972625 TCAACTACGAGAGGGCATTTG 58.027 47.619 0.00 0.00 0.00 2.32
56 57 1.398390 CAACTACGAGAGGGCATTTGC 59.602 52.381 0.00 0.00 41.14 3.68
57 58 0.905357 ACTACGAGAGGGCATTTGCT 59.095 50.000 2.12 0.00 41.70 3.91
58 59 1.279271 ACTACGAGAGGGCATTTGCTT 59.721 47.619 2.12 0.00 41.70 3.91
59 60 1.667724 CTACGAGAGGGCATTTGCTTG 59.332 52.381 2.12 0.00 41.70 4.01
60 61 0.036732 ACGAGAGGGCATTTGCTTGA 59.963 50.000 2.12 0.00 41.70 3.02
61 62 1.167851 CGAGAGGGCATTTGCTTGAA 58.832 50.000 2.12 0.00 41.70 2.69
62 63 1.541147 CGAGAGGGCATTTGCTTGAAA 59.459 47.619 2.12 0.00 41.70 2.69
63 64 2.030007 CGAGAGGGCATTTGCTTGAAAA 60.030 45.455 2.12 0.00 41.70 2.29
64 65 3.552684 CGAGAGGGCATTTGCTTGAAAAA 60.553 43.478 2.12 0.00 41.70 1.94
85 86 6.887626 AAAATTAAAAACTACGAGGAGGCA 57.112 33.333 0.00 0.00 0.00 4.75
86 87 7.462571 AAAATTAAAAACTACGAGGAGGCAT 57.537 32.000 0.00 0.00 0.00 4.40
87 88 6.436843 AATTAAAAACTACGAGGAGGCATG 57.563 37.500 0.00 0.00 0.00 4.06
88 89 1.739067 AAAACTACGAGGAGGCATGC 58.261 50.000 9.90 9.90 0.00 4.06
89 90 0.613260 AAACTACGAGGAGGCATGCA 59.387 50.000 21.36 0.00 0.00 3.96
90 91 0.613260 AACTACGAGGAGGCATGCAA 59.387 50.000 21.36 0.00 0.00 4.08
91 92 0.108138 ACTACGAGGAGGCATGCAAC 60.108 55.000 21.36 12.26 0.00 4.17
92 93 0.176680 CTACGAGGAGGCATGCAACT 59.823 55.000 21.36 13.78 0.00 3.16
93 94 0.613260 TACGAGGAGGCATGCAACTT 59.387 50.000 21.36 8.88 0.00 2.66
94 95 0.674895 ACGAGGAGGCATGCAACTTC 60.675 55.000 21.36 16.17 0.00 3.01
95 96 1.372087 CGAGGAGGCATGCAACTTCC 61.372 60.000 21.36 18.81 0.00 3.46
96 97 0.322816 GAGGAGGCATGCAACTTCCA 60.323 55.000 21.36 0.00 0.00 3.53
97 98 0.333993 AGGAGGCATGCAACTTCCAT 59.666 50.000 21.36 7.70 0.00 3.41
98 99 1.565759 AGGAGGCATGCAACTTCCATA 59.434 47.619 21.36 0.00 0.00 2.74
99 100 2.176364 AGGAGGCATGCAACTTCCATAT 59.824 45.455 21.36 2.56 0.00 1.78
100 101 2.555757 GGAGGCATGCAACTTCCATATC 59.444 50.000 21.36 0.00 0.00 1.63
101 102 3.216800 GAGGCATGCAACTTCCATATCA 58.783 45.455 21.36 0.00 0.00 2.15
102 103 3.633525 GAGGCATGCAACTTCCATATCAA 59.366 43.478 21.36 0.00 0.00 2.57
103 104 3.382546 AGGCATGCAACTTCCATATCAAC 59.617 43.478 21.36 0.00 0.00 3.18
104 105 3.382546 GGCATGCAACTTCCATATCAACT 59.617 43.478 21.36 0.00 0.00 3.16
105 106 4.580167 GGCATGCAACTTCCATATCAACTA 59.420 41.667 21.36 0.00 0.00 2.24
106 107 5.067674 GGCATGCAACTTCCATATCAACTAA 59.932 40.000 21.36 0.00 0.00 2.24
107 108 6.204359 GCATGCAACTTCCATATCAACTAAG 58.796 40.000 14.21 0.00 0.00 2.18
108 109 6.183360 GCATGCAACTTCCATATCAACTAAGT 60.183 38.462 14.21 0.00 31.94 2.24
109 110 7.629222 GCATGCAACTTCCATATCAACTAAGTT 60.629 37.037 14.21 0.00 40.13 2.66
126 127 9.323985 CAACTAAGTTGAAATGGGAAATTTTGA 57.676 29.630 0.00 0.00 45.28 2.69
128 129 9.492973 ACTAAGTTGAAATGGGAAATTTTGATG 57.507 29.630 0.00 0.00 0.00 3.07
129 130 9.709495 CTAAGTTGAAATGGGAAATTTTGATGA 57.291 29.630 0.00 0.00 0.00 2.92
130 131 8.611654 AAGTTGAAATGGGAAATTTTGATGAG 57.388 30.769 0.00 0.00 0.00 2.90
131 132 7.738847 AGTTGAAATGGGAAATTTTGATGAGT 58.261 30.769 0.00 0.00 0.00 3.41
132 133 8.212995 AGTTGAAATGGGAAATTTTGATGAGTT 58.787 29.630 0.00 0.00 0.00 3.01
133 134 7.966246 TGAAATGGGAAATTTTGATGAGTTG 57.034 32.000 0.00 0.00 0.00 3.16
134 135 7.507829 TGAAATGGGAAATTTTGATGAGTTGT 58.492 30.769 0.00 0.00 0.00 3.32
135 136 8.646004 TGAAATGGGAAATTTTGATGAGTTGTA 58.354 29.630 0.00 0.00 0.00 2.41
136 137 9.657419 GAAATGGGAAATTTTGATGAGTTGTAT 57.343 29.630 0.00 0.00 0.00 2.29
137 138 9.657419 AAATGGGAAATTTTGATGAGTTGTATC 57.343 29.630 0.00 0.00 0.00 2.24
138 139 8.599624 ATGGGAAATTTTGATGAGTTGTATCT 57.400 30.769 0.00 0.00 0.00 1.98
139 140 9.699410 ATGGGAAATTTTGATGAGTTGTATCTA 57.301 29.630 0.00 0.00 0.00 1.98
140 141 9.177608 TGGGAAATTTTGATGAGTTGTATCTAG 57.822 33.333 0.00 0.00 0.00 2.43
141 142 9.396022 GGGAAATTTTGATGAGTTGTATCTAGA 57.604 33.333 0.00 0.00 0.00 2.43
144 145 8.970859 AATTTTGATGAGTTGTATCTAGAGGG 57.029 34.615 0.00 0.00 0.00 4.30
145 146 7.733773 TTTTGATGAGTTGTATCTAGAGGGA 57.266 36.000 0.00 0.00 0.00 4.20
146 147 7.733773 TTTGATGAGTTGTATCTAGAGGGAA 57.266 36.000 0.00 0.00 0.00 3.97
147 148 7.921041 TTGATGAGTTGTATCTAGAGGGAAT 57.079 36.000 0.00 0.00 0.00 3.01
148 149 9.434275 TTTGATGAGTTGTATCTAGAGGGAATA 57.566 33.333 0.00 0.00 0.00 1.75
149 150 9.607333 TTGATGAGTTGTATCTAGAGGGAATAT 57.393 33.333 0.00 0.00 0.00 1.28
150 151 9.607333 TGATGAGTTGTATCTAGAGGGAATATT 57.393 33.333 0.00 0.00 0.00 1.28
151 152 9.868277 GATGAGTTGTATCTAGAGGGAATATTG 57.132 37.037 0.00 0.00 0.00 1.90
152 153 8.783660 TGAGTTGTATCTAGAGGGAATATTGT 57.216 34.615 0.00 0.00 0.00 2.71
153 154 8.642432 TGAGTTGTATCTAGAGGGAATATTGTG 58.358 37.037 0.00 0.00 0.00 3.33
154 155 8.783660 AGTTGTATCTAGAGGGAATATTGTGA 57.216 34.615 0.00 0.00 0.00 3.58
155 156 8.865090 AGTTGTATCTAGAGGGAATATTGTGAG 58.135 37.037 0.00 0.00 0.00 3.51
156 157 8.861086 GTTGTATCTAGAGGGAATATTGTGAGA 58.139 37.037 0.00 0.00 0.00 3.27
157 158 8.410673 TGTATCTAGAGGGAATATTGTGAGAC 57.589 38.462 0.00 0.00 0.00 3.36
158 159 8.004801 TGTATCTAGAGGGAATATTGTGAGACA 58.995 37.037 0.00 0.00 0.00 3.41
159 160 6.968263 TCTAGAGGGAATATTGTGAGACAG 57.032 41.667 0.00 0.00 0.00 3.51
160 161 6.673583 TCTAGAGGGAATATTGTGAGACAGA 58.326 40.000 0.00 0.00 0.00 3.41
161 162 5.867903 AGAGGGAATATTGTGAGACAGAG 57.132 43.478 0.00 0.00 0.00 3.35
162 163 4.100808 AGAGGGAATATTGTGAGACAGAGC 59.899 45.833 0.00 0.00 0.00 4.09
163 164 3.135530 AGGGAATATTGTGAGACAGAGCC 59.864 47.826 0.00 0.00 0.00 4.70
164 165 3.471680 GGAATATTGTGAGACAGAGCCC 58.528 50.000 0.00 0.00 0.00 5.19
165 166 3.471680 GAATATTGTGAGACAGAGCCCC 58.528 50.000 0.00 0.00 0.00 5.80
166 167 2.254152 TATTGTGAGACAGAGCCCCT 57.746 50.000 0.00 0.00 0.00 4.79
167 168 2.254152 ATTGTGAGACAGAGCCCCTA 57.746 50.000 0.00 0.00 0.00 3.53
168 169 1.561643 TTGTGAGACAGAGCCCCTAG 58.438 55.000 0.00 0.00 0.00 3.02
169 170 0.972983 TGTGAGACAGAGCCCCTAGC 60.973 60.000 0.00 0.00 44.25 3.42
170 171 1.381872 TGAGACAGAGCCCCTAGCC 60.382 63.158 0.00 0.00 45.47 3.93
171 172 1.381872 GAGACAGAGCCCCTAGCCA 60.382 63.158 0.00 0.00 45.47 4.75
172 173 0.762461 GAGACAGAGCCCCTAGCCAT 60.762 60.000 0.00 0.00 45.47 4.40
173 174 1.053264 AGACAGAGCCCCTAGCCATG 61.053 60.000 0.00 0.00 45.47 3.66
174 175 1.003442 ACAGAGCCCCTAGCCATGA 59.997 57.895 0.00 0.00 45.47 3.07
175 176 1.053264 ACAGAGCCCCTAGCCATGAG 61.053 60.000 0.00 0.00 45.47 2.90
176 177 0.762082 CAGAGCCCCTAGCCATGAGA 60.762 60.000 0.00 0.00 45.47 3.27
177 178 0.471591 AGAGCCCCTAGCCATGAGAG 60.472 60.000 0.00 0.00 45.47 3.20
178 179 0.470833 GAGCCCCTAGCCATGAGAGA 60.471 60.000 0.00 0.00 45.47 3.10
179 180 0.471591 AGCCCCTAGCCATGAGAGAG 60.472 60.000 0.00 0.00 45.47 3.20
180 181 0.470833 GCCCCTAGCCATGAGAGAGA 60.471 60.000 0.00 0.00 34.35 3.10
181 182 1.337118 CCCCTAGCCATGAGAGAGAC 58.663 60.000 0.00 0.00 0.00 3.36
182 183 1.412217 CCCCTAGCCATGAGAGAGACA 60.412 57.143 0.00 0.00 0.00 3.41
183 184 2.607499 CCCTAGCCATGAGAGAGACAT 58.393 52.381 0.00 0.00 0.00 3.06
184 185 2.971330 CCCTAGCCATGAGAGAGACATT 59.029 50.000 0.00 0.00 0.00 2.71
185 186 4.155709 CCCTAGCCATGAGAGAGACATTA 58.844 47.826 0.00 0.00 0.00 1.90
186 187 4.220382 CCCTAGCCATGAGAGAGACATTAG 59.780 50.000 0.00 0.00 0.00 1.73
187 188 3.749665 AGCCATGAGAGAGACATTAGC 57.250 47.619 0.00 0.00 0.00 3.09
188 189 3.036819 AGCCATGAGAGAGACATTAGCA 58.963 45.455 0.00 0.00 31.18 3.49
189 190 3.453717 AGCCATGAGAGAGACATTAGCAA 59.546 43.478 0.00 0.00 31.18 3.91
190 191 3.559242 GCCATGAGAGAGACATTAGCAAC 59.441 47.826 0.00 0.00 0.00 4.17
191 192 3.801050 CCATGAGAGAGACATTAGCAACG 59.199 47.826 0.00 0.00 0.00 4.10
192 193 4.428209 CATGAGAGAGACATTAGCAACGT 58.572 43.478 0.00 0.00 0.00 3.99
193 194 4.521130 TGAGAGAGACATTAGCAACGTT 57.479 40.909 0.00 0.00 0.00 3.99
194 195 4.883083 TGAGAGAGACATTAGCAACGTTT 58.117 39.130 0.00 0.00 0.00 3.60
195 196 5.297547 TGAGAGAGACATTAGCAACGTTTT 58.702 37.500 0.00 0.00 0.00 2.43
196 197 5.758296 TGAGAGAGACATTAGCAACGTTTTT 59.242 36.000 0.00 0.00 0.00 1.94
212 213 1.910688 TTTTTCGTTTGTGTTCCCGC 58.089 45.000 0.00 0.00 0.00 6.13
213 214 0.100861 TTTTCGTTTGTGTTCCCGCC 59.899 50.000 0.00 0.00 0.00 6.13
214 215 2.049475 TTTCGTTTGTGTTCCCGCCG 62.049 55.000 0.00 0.00 0.00 6.46
215 216 4.020378 CGTTTGTGTTCCCGCCGG 62.020 66.667 0.00 0.00 0.00 6.13
216 217 2.903350 GTTTGTGTTCCCGCCGGT 60.903 61.111 1.90 0.00 0.00 5.28
217 218 2.124236 TTTGTGTTCCCGCCGGTT 60.124 55.556 1.90 0.00 0.00 4.44
218 219 1.753463 TTTGTGTTCCCGCCGGTTT 60.753 52.632 1.90 0.00 0.00 3.27
219 220 1.726533 TTTGTGTTCCCGCCGGTTTC 61.727 55.000 1.90 0.00 0.00 2.78
220 221 2.281276 GTGTTCCCGCCGGTTTCT 60.281 61.111 1.90 0.00 0.00 2.52
221 222 2.031465 TGTTCCCGCCGGTTTCTC 59.969 61.111 1.90 0.00 0.00 2.87
222 223 3.116531 GTTCCCGCCGGTTTCTCG 61.117 66.667 1.90 0.00 0.00 4.04
223 224 3.618750 TTCCCGCCGGTTTCTCGT 61.619 61.111 1.90 0.00 0.00 4.18
224 225 3.578515 TTCCCGCCGGTTTCTCGTC 62.579 63.158 1.90 0.00 0.00 4.20
225 226 4.065281 CCCGCCGGTTTCTCGTCT 62.065 66.667 1.90 0.00 0.00 4.18
226 227 2.703798 CCCGCCGGTTTCTCGTCTA 61.704 63.158 1.90 0.00 0.00 2.59
227 228 1.436336 CCGCCGGTTTCTCGTCTAT 59.564 57.895 1.90 0.00 0.00 1.98
228 229 0.594284 CCGCCGGTTTCTCGTCTATC 60.594 60.000 1.90 0.00 0.00 2.08
229 230 0.381089 CGCCGGTTTCTCGTCTATCT 59.619 55.000 1.90 0.00 0.00 1.98
230 231 1.841450 GCCGGTTTCTCGTCTATCTG 58.159 55.000 1.90 0.00 0.00 2.90
231 232 1.404391 GCCGGTTTCTCGTCTATCTGA 59.596 52.381 1.90 0.00 0.00 3.27
232 233 2.034812 GCCGGTTTCTCGTCTATCTGAT 59.965 50.000 1.90 0.00 0.00 2.90
233 234 3.633235 CCGGTTTCTCGTCTATCTGATG 58.367 50.000 0.00 0.00 0.00 3.07
234 235 3.551046 CCGGTTTCTCGTCTATCTGATGG 60.551 52.174 0.00 0.00 32.70 3.51
235 236 3.385577 GGTTTCTCGTCTATCTGATGGC 58.614 50.000 0.00 0.00 32.70 4.40
236 237 3.385577 GTTTCTCGTCTATCTGATGGCC 58.614 50.000 0.00 0.00 32.70 5.36
237 238 2.364972 TCTCGTCTATCTGATGGCCA 57.635 50.000 8.56 8.56 32.70 5.36
238 239 1.957177 TCTCGTCTATCTGATGGCCAC 59.043 52.381 8.16 2.36 32.70 5.01
239 240 1.959985 CTCGTCTATCTGATGGCCACT 59.040 52.381 8.16 0.00 32.70 4.00
240 241 2.363680 CTCGTCTATCTGATGGCCACTT 59.636 50.000 8.16 0.00 32.70 3.16
241 242 2.766263 TCGTCTATCTGATGGCCACTTT 59.234 45.455 8.16 0.00 32.70 2.66
242 243 2.868583 CGTCTATCTGATGGCCACTTTG 59.131 50.000 8.16 0.00 0.00 2.77
243 244 3.209410 GTCTATCTGATGGCCACTTTGG 58.791 50.000 8.16 0.00 41.55 3.28
252 253 3.354678 CCACTTTGGCACGGGAAG 58.645 61.111 0.00 0.00 0.00 3.46
253 254 1.228124 CCACTTTGGCACGGGAAGA 60.228 57.895 3.78 0.00 0.00 2.87
254 255 1.237285 CCACTTTGGCACGGGAAGAG 61.237 60.000 3.78 0.00 0.00 2.85
255 256 1.073199 ACTTTGGCACGGGAAGAGG 59.927 57.895 3.78 0.00 0.00 3.69
256 257 1.675641 CTTTGGCACGGGAAGAGGG 60.676 63.158 0.00 0.00 0.00 4.30
257 258 2.124507 CTTTGGCACGGGAAGAGGGA 62.125 60.000 0.00 0.00 0.00 4.20
258 259 1.710996 TTTGGCACGGGAAGAGGGAA 61.711 55.000 0.00 0.00 0.00 3.97
259 260 1.710996 TTGGCACGGGAAGAGGGAAA 61.711 55.000 0.00 0.00 0.00 3.13
260 261 1.674651 GGCACGGGAAGAGGGAAAC 60.675 63.158 0.00 0.00 0.00 2.78
280 281 7.209475 GGAAACCATGTATTAATGTTGGATGG 58.791 38.462 15.88 12.61 35.90 3.51
281 282 7.147742 GGAAACCATGTATTAATGTTGGATGGT 60.148 37.037 15.88 13.08 43.08 3.55
282 283 8.830915 AAACCATGTATTAATGTTGGATGGTA 57.169 30.769 15.88 0.00 40.93 3.25
283 284 9.432982 AAACCATGTATTAATGTTGGATGGTAT 57.567 29.630 15.88 7.19 40.93 2.73
284 285 8.635765 ACCATGTATTAATGTTGGATGGTATC 57.364 34.615 15.88 0.00 40.21 2.24
300 301 8.575649 GGATGGTATCCTAAACTTTTTCTTGA 57.424 34.615 0.61 0.00 46.19 3.02
301 302 9.190317 GGATGGTATCCTAAACTTTTTCTTGAT 57.810 33.333 0.61 0.00 46.19 2.57
326 327 3.280920 TTTTTGCGTTCATGGTGGC 57.719 47.368 0.00 0.00 0.00 5.01
327 328 0.461548 TTTTTGCGTTCATGGTGGCA 59.538 45.000 0.00 0.00 0.00 4.92
328 329 0.678395 TTTTGCGTTCATGGTGGCAT 59.322 45.000 6.36 0.00 35.03 4.40
329 330 0.678395 TTTGCGTTCATGGTGGCATT 59.322 45.000 6.36 0.00 35.03 3.56
330 331 0.038435 TTGCGTTCATGGTGGCATTG 60.038 50.000 6.36 0.00 35.03 2.82
331 332 1.177895 TGCGTTCATGGTGGCATTGT 61.178 50.000 0.00 0.00 0.00 2.71
332 333 0.456653 GCGTTCATGGTGGCATTGTC 60.457 55.000 0.00 0.00 0.00 3.18
333 334 1.167851 CGTTCATGGTGGCATTGTCT 58.832 50.000 0.00 0.00 0.00 3.41
334 335 1.131126 CGTTCATGGTGGCATTGTCTC 59.869 52.381 0.00 0.00 0.00 3.36
335 336 1.131126 GTTCATGGTGGCATTGTCTCG 59.869 52.381 0.00 0.00 0.00 4.04
336 337 0.612744 TCATGGTGGCATTGTCTCGA 59.387 50.000 0.00 0.00 0.00 4.04
337 338 0.729116 CATGGTGGCATTGTCTCGAC 59.271 55.000 0.00 0.00 0.00 4.20
338 339 0.740868 ATGGTGGCATTGTCTCGACG 60.741 55.000 0.00 0.00 0.00 5.12
339 340 1.080093 GGTGGCATTGTCTCGACGA 60.080 57.895 0.00 0.00 0.00 4.20
340 341 0.460284 GGTGGCATTGTCTCGACGAT 60.460 55.000 0.00 0.00 35.87 3.73
345 346 1.845266 CATTGTCTCGACGATGGAGG 58.155 55.000 16.22 0.00 45.25 4.30
346 347 0.103208 ATTGTCTCGACGATGGAGGC 59.897 55.000 0.00 0.00 36.68 4.70
347 348 2.024871 GTCTCGACGATGGAGGCG 59.975 66.667 0.00 0.00 32.34 5.52
348 349 2.124860 TCTCGACGATGGAGGCGA 60.125 61.111 0.00 0.00 32.34 5.54
349 350 1.526225 TCTCGACGATGGAGGCGAT 60.526 57.895 0.00 0.00 31.87 4.58
350 351 0.250166 TCTCGACGATGGAGGCGATA 60.250 55.000 0.00 0.00 31.87 2.92
351 352 0.805614 CTCGACGATGGAGGCGATAT 59.194 55.000 0.00 0.00 31.87 1.63
352 353 0.803117 TCGACGATGGAGGCGATATC 59.197 55.000 0.00 0.00 0.00 1.63
353 354 0.521735 CGACGATGGAGGCGATATCA 59.478 55.000 3.12 0.00 0.00 2.15
354 355 1.133216 CGACGATGGAGGCGATATCAT 59.867 52.381 3.12 0.00 0.00 2.45
355 356 2.354821 CGACGATGGAGGCGATATCATA 59.645 50.000 3.12 0.00 0.00 2.15
356 357 3.696898 GACGATGGAGGCGATATCATAC 58.303 50.000 3.12 0.00 0.00 2.39
357 358 2.097629 ACGATGGAGGCGATATCATACG 59.902 50.000 3.12 0.00 0.00 3.06
369 370 6.632171 CGATATCATACGCAATAAAGCTCA 57.368 37.500 3.12 0.00 0.00 4.26
370 371 6.461816 CGATATCATACGCAATAAAGCTCAC 58.538 40.000 3.12 0.00 0.00 3.51
371 372 6.089417 CGATATCATACGCAATAAAGCTCACA 59.911 38.462 3.12 0.00 0.00 3.58
372 373 4.857871 TCATACGCAATAAAGCTCACAC 57.142 40.909 0.00 0.00 0.00 3.82
373 374 3.305897 TCATACGCAATAAAGCTCACACG 59.694 43.478 0.00 0.00 0.00 4.49
374 375 1.508632 ACGCAATAAAGCTCACACGT 58.491 45.000 0.00 0.00 0.00 4.49
375 376 1.459592 ACGCAATAAAGCTCACACGTC 59.540 47.619 0.00 0.00 0.00 4.34
376 377 1.726791 CGCAATAAAGCTCACACGTCT 59.273 47.619 0.00 0.00 0.00 4.18
377 378 2.222596 CGCAATAAAGCTCACACGTCTC 60.223 50.000 0.00 0.00 0.00 3.36
378 379 2.736721 GCAATAAAGCTCACACGTCTCA 59.263 45.455 0.00 0.00 0.00 3.27
379 380 3.372206 GCAATAAAGCTCACACGTCTCAT 59.628 43.478 0.00 0.00 0.00 2.90
380 381 4.566759 GCAATAAAGCTCACACGTCTCATA 59.433 41.667 0.00 0.00 0.00 2.15
381 382 5.235186 GCAATAAAGCTCACACGTCTCATAT 59.765 40.000 0.00 0.00 0.00 1.78
382 383 6.643845 CAATAAAGCTCACACGTCTCATATG 58.356 40.000 0.00 0.00 0.00 1.78
383 384 2.879002 AGCTCACACGTCTCATATGG 57.121 50.000 2.13 0.00 0.00 2.74
384 385 2.103373 AGCTCACACGTCTCATATGGT 58.897 47.619 2.13 0.00 0.00 3.55
385 386 2.159184 AGCTCACACGTCTCATATGGTG 60.159 50.000 2.13 5.63 36.50 4.17
386 387 2.417379 GCTCACACGTCTCATATGGTGT 60.417 50.000 9.00 9.00 43.87 4.16
389 390 3.510388 ACACGTCTCATATGGTGTGAG 57.490 47.619 12.81 0.03 41.67 3.51
390 391 2.166459 ACACGTCTCATATGGTGTGAGG 59.834 50.000 12.81 9.54 41.67 3.86
391 392 2.166459 CACGTCTCATATGGTGTGAGGT 59.834 50.000 2.13 5.84 45.17 3.85
392 393 2.832129 ACGTCTCATATGGTGTGAGGTT 59.168 45.455 2.13 0.00 43.11 3.50
393 394 4.021229 ACGTCTCATATGGTGTGAGGTTA 58.979 43.478 2.13 0.00 43.11 2.85
394 395 4.098044 ACGTCTCATATGGTGTGAGGTTAG 59.902 45.833 2.13 0.00 43.11 2.34
395 396 4.098044 CGTCTCATATGGTGTGAGGTTAGT 59.902 45.833 2.13 0.00 42.58 2.24
396 397 5.394224 CGTCTCATATGGTGTGAGGTTAGTT 60.394 44.000 2.13 0.00 42.58 2.24
397 398 6.183360 CGTCTCATATGGTGTGAGGTTAGTTA 60.183 42.308 2.13 0.00 42.58 2.24
398 399 7.553334 GTCTCATATGGTGTGAGGTTAGTTAA 58.447 38.462 2.13 0.00 42.58 2.01
399 400 7.707035 GTCTCATATGGTGTGAGGTTAGTTAAG 59.293 40.741 2.13 0.00 42.58 1.85
400 401 7.399191 TCTCATATGGTGTGAGGTTAGTTAAGT 59.601 37.037 2.13 0.00 42.58 2.24
401 402 7.913789 TCATATGGTGTGAGGTTAGTTAAGTT 58.086 34.615 2.13 0.00 0.00 2.66
402 403 8.380099 TCATATGGTGTGAGGTTAGTTAAGTTT 58.620 33.333 2.13 0.00 0.00 2.66
403 404 6.877611 ATGGTGTGAGGTTAGTTAAGTTTG 57.122 37.500 0.00 0.00 0.00 2.93
404 405 5.747342 TGGTGTGAGGTTAGTTAAGTTTGT 58.253 37.500 0.00 0.00 0.00 2.83
405 406 6.887013 TGGTGTGAGGTTAGTTAAGTTTGTA 58.113 36.000 0.00 0.00 0.00 2.41
406 407 6.762661 TGGTGTGAGGTTAGTTAAGTTTGTAC 59.237 38.462 0.00 0.00 0.00 2.90
407 408 6.762661 GGTGTGAGGTTAGTTAAGTTTGTACA 59.237 38.462 0.00 0.00 0.00 2.90
408 409 7.280652 GGTGTGAGGTTAGTTAAGTTTGTACAA 59.719 37.037 3.59 3.59 0.00 2.41
409 410 8.333186 GTGTGAGGTTAGTTAAGTTTGTACAAG 58.667 37.037 8.56 0.00 0.00 3.16
410 411 7.011669 TGTGAGGTTAGTTAAGTTTGTACAAGC 59.988 37.037 14.01 14.01 0.00 4.01
411 412 7.226128 GTGAGGTTAGTTAAGTTTGTACAAGCT 59.774 37.037 18.16 18.16 33.15 3.74
412 413 7.771826 TGAGGTTAGTTAAGTTTGTACAAGCTT 59.228 33.333 31.69 31.69 42.92 3.74
413 414 9.264719 GAGGTTAGTTAAGTTTGTACAAGCTTA 57.735 33.333 29.96 29.96 41.17 3.09
414 415 9.269453 AGGTTAGTTAAGTTTGTACAAGCTTAG 57.731 33.333 30.91 0.00 42.30 2.18
415 416 9.049523 GGTTAGTTAAGTTTGTACAAGCTTAGT 57.950 33.333 30.91 26.04 42.30 2.24
419 420 8.953313 AGTTAAGTTTGTACAAGCTTAGTTTGT 58.047 29.630 30.91 17.72 42.30 2.83
420 421 9.218359 GTTAAGTTTGTACAAGCTTAGTTTGTC 57.782 33.333 30.91 19.54 42.30 3.18
421 422 6.044512 AGTTTGTACAAGCTTAGTTTGTCG 57.955 37.500 18.16 0.00 37.98 4.35
422 423 5.583457 AGTTTGTACAAGCTTAGTTTGTCGT 59.417 36.000 18.16 0.00 37.98 4.34
423 424 5.398176 TTGTACAAGCTTAGTTTGTCGTG 57.602 39.130 17.19 0.00 37.98 4.35
424 425 3.805422 TGTACAAGCTTAGTTTGTCGTGG 59.195 43.478 17.19 0.00 37.98 4.94
425 426 1.602377 ACAAGCTTAGTTTGTCGTGGC 59.398 47.619 8.62 0.00 31.75 5.01
426 427 1.069227 CAAGCTTAGTTTGTCGTGGCC 60.069 52.381 0.00 0.00 0.00 5.36
427 428 0.396811 AGCTTAGTTTGTCGTGGCCT 59.603 50.000 3.32 0.00 0.00 5.19
428 429 1.202770 AGCTTAGTTTGTCGTGGCCTT 60.203 47.619 3.32 0.00 0.00 4.35
429 430 1.607148 GCTTAGTTTGTCGTGGCCTTT 59.393 47.619 3.32 0.00 0.00 3.11
430 431 2.034179 GCTTAGTTTGTCGTGGCCTTTT 59.966 45.455 3.32 0.00 0.00 2.27
431 432 3.852205 GCTTAGTTTGTCGTGGCCTTTTC 60.852 47.826 3.32 0.00 0.00 2.29
432 433 1.029681 AGTTTGTCGTGGCCTTTTCC 58.970 50.000 3.32 0.00 0.00 3.13
433 434 1.029681 GTTTGTCGTGGCCTTTTCCT 58.970 50.000 3.32 0.00 0.00 3.36
434 435 1.407618 GTTTGTCGTGGCCTTTTCCTT 59.592 47.619 3.32 0.00 0.00 3.36
435 436 1.770294 TTGTCGTGGCCTTTTCCTTT 58.230 45.000 3.32 0.00 0.00 3.11
436 437 1.028905 TGTCGTGGCCTTTTCCTTTG 58.971 50.000 3.32 0.00 0.00 2.77
437 438 1.314730 GTCGTGGCCTTTTCCTTTGA 58.685 50.000 3.32 0.00 0.00 2.69
438 439 1.266989 GTCGTGGCCTTTTCCTTTGAG 59.733 52.381 3.32 0.00 0.00 3.02
439 440 0.039165 CGTGGCCTTTTCCTTTGAGC 60.039 55.000 3.32 0.00 0.00 4.26
440 441 0.318441 GTGGCCTTTTCCTTTGAGCC 59.682 55.000 3.32 0.00 40.87 4.70
441 442 0.188342 TGGCCTTTTCCTTTGAGCCT 59.812 50.000 3.32 0.00 41.08 4.58
442 443 1.342074 GGCCTTTTCCTTTGAGCCTT 58.658 50.000 0.00 0.00 37.42 4.35
443 444 1.001293 GGCCTTTTCCTTTGAGCCTTG 59.999 52.381 0.00 0.00 37.42 3.61
444 445 1.688735 GCCTTTTCCTTTGAGCCTTGT 59.311 47.619 0.00 0.00 0.00 3.16
445 446 2.103094 GCCTTTTCCTTTGAGCCTTGTT 59.897 45.455 0.00 0.00 0.00 2.83
446 447 3.721035 CCTTTTCCTTTGAGCCTTGTTG 58.279 45.455 0.00 0.00 0.00 3.33
447 448 3.384467 CCTTTTCCTTTGAGCCTTGTTGA 59.616 43.478 0.00 0.00 0.00 3.18
448 449 4.141959 CCTTTTCCTTTGAGCCTTGTTGAA 60.142 41.667 0.00 0.00 0.00 2.69
449 450 5.413309 TTTTCCTTTGAGCCTTGTTGAAA 57.587 34.783 0.00 0.00 0.00 2.69
450 451 5.413309 TTTCCTTTGAGCCTTGTTGAAAA 57.587 34.783 0.00 0.00 0.00 2.29
451 452 4.654091 TCCTTTGAGCCTTGTTGAAAAG 57.346 40.909 0.00 0.00 0.00 2.27
452 453 4.023291 TCCTTTGAGCCTTGTTGAAAAGT 58.977 39.130 0.00 0.00 0.00 2.66
453 454 5.197451 TCCTTTGAGCCTTGTTGAAAAGTA 58.803 37.500 0.00 0.00 0.00 2.24
454 455 5.067283 TCCTTTGAGCCTTGTTGAAAAGTAC 59.933 40.000 0.00 0.00 0.00 2.73
455 456 5.163561 CCTTTGAGCCTTGTTGAAAAGTACA 60.164 40.000 0.00 0.00 0.00 2.90
456 457 5.906113 TTGAGCCTTGTTGAAAAGTACAA 57.094 34.783 0.00 0.00 0.00 2.41
457 458 5.906113 TGAGCCTTGTTGAAAAGTACAAA 57.094 34.783 0.00 0.00 0.00 2.83
458 459 6.274157 TGAGCCTTGTTGAAAAGTACAAAA 57.726 33.333 0.00 0.00 0.00 2.44
459 460 6.872920 TGAGCCTTGTTGAAAAGTACAAAAT 58.127 32.000 0.00 0.00 0.00 1.82
460 461 6.756074 TGAGCCTTGTTGAAAAGTACAAAATG 59.244 34.615 0.00 0.00 0.00 2.32
461 462 6.639563 AGCCTTGTTGAAAAGTACAAAATGT 58.360 32.000 0.00 0.00 0.00 2.71
462 463 7.777095 AGCCTTGTTGAAAAGTACAAAATGTA 58.223 30.769 0.00 0.00 0.00 2.29
463 464 8.254508 AGCCTTGTTGAAAAGTACAAAATGTAA 58.745 29.630 0.00 0.00 34.21 2.41
464 465 8.874816 GCCTTGTTGAAAAGTACAAAATGTAAA 58.125 29.630 0.00 0.00 34.21 2.01
479 480 8.846211 ACAAAATGTAAAACATGTAGCTACTGT 58.154 29.630 23.84 20.38 37.97 3.55
480 481 9.329913 CAAAATGTAAAACATGTAGCTACTGTC 57.670 33.333 23.84 13.14 37.97 3.51
481 482 8.615878 AAATGTAAAACATGTAGCTACTGTCA 57.384 30.769 23.84 17.17 37.97 3.58
482 483 8.615878 AATGTAAAACATGTAGCTACTGTCAA 57.384 30.769 23.84 4.36 37.97 3.18
483 484 7.416154 TGTAAAACATGTAGCTACTGTCAAC 57.584 36.000 23.84 19.54 0.00 3.18
484 485 5.591643 AAAACATGTAGCTACTGTCAACG 57.408 39.130 23.84 7.58 0.00 4.10
485 486 4.514781 AACATGTAGCTACTGTCAACGA 57.485 40.909 23.84 2.09 0.00 3.85
486 487 4.098055 ACATGTAGCTACTGTCAACGAG 57.902 45.455 23.84 6.50 0.00 4.18
487 488 3.506455 ACATGTAGCTACTGTCAACGAGT 59.494 43.478 23.84 7.04 0.00 4.18
488 489 4.022242 ACATGTAGCTACTGTCAACGAGTT 60.022 41.667 23.84 0.00 0.00 3.01
489 490 4.156664 TGTAGCTACTGTCAACGAGTTC 57.843 45.455 23.84 0.00 0.00 3.01
490 491 3.566742 TGTAGCTACTGTCAACGAGTTCA 59.433 43.478 23.84 0.00 0.00 3.18
491 492 3.728076 AGCTACTGTCAACGAGTTCAA 57.272 42.857 0.00 0.00 0.00 2.69
492 493 4.054780 AGCTACTGTCAACGAGTTCAAA 57.945 40.909 0.00 0.00 0.00 2.69
493 494 4.632153 AGCTACTGTCAACGAGTTCAAAT 58.368 39.130 0.00 0.00 0.00 2.32
494 495 5.779922 AGCTACTGTCAACGAGTTCAAATA 58.220 37.500 0.00 0.00 0.00 1.40
495 496 5.864474 AGCTACTGTCAACGAGTTCAAATAG 59.136 40.000 0.00 0.00 0.00 1.73
496 497 5.862323 GCTACTGTCAACGAGTTCAAATAGA 59.138 40.000 0.00 0.00 0.00 1.98
497 498 6.531948 GCTACTGTCAACGAGTTCAAATAGAT 59.468 38.462 0.00 0.00 0.00 1.98
498 499 6.952935 ACTGTCAACGAGTTCAAATAGATC 57.047 37.500 0.00 0.00 0.00 2.75
499 500 6.692486 ACTGTCAACGAGTTCAAATAGATCT 58.308 36.000 0.00 0.00 0.00 2.75
500 501 6.587990 ACTGTCAACGAGTTCAAATAGATCTG 59.412 38.462 5.18 0.00 0.00 2.90
501 502 6.687604 TGTCAACGAGTTCAAATAGATCTGA 58.312 36.000 5.18 0.00 0.00 3.27
502 503 7.323420 TGTCAACGAGTTCAAATAGATCTGAT 58.677 34.615 5.18 0.00 0.00 2.90
503 504 7.276438 TGTCAACGAGTTCAAATAGATCTGATG 59.724 37.037 5.18 1.68 0.00 3.07
504 505 6.256539 TCAACGAGTTCAAATAGATCTGATGC 59.743 38.462 5.18 0.00 0.00 3.91
505 506 5.664457 ACGAGTTCAAATAGATCTGATGCA 58.336 37.500 5.18 0.00 0.00 3.96
506 507 6.286758 ACGAGTTCAAATAGATCTGATGCAT 58.713 36.000 5.18 0.00 0.00 3.96
507 508 6.765036 ACGAGTTCAAATAGATCTGATGCATT 59.235 34.615 5.18 0.00 0.00 3.56
508 509 7.928167 ACGAGTTCAAATAGATCTGATGCATTA 59.072 33.333 5.18 0.00 0.00 1.90
509 510 8.933807 CGAGTTCAAATAGATCTGATGCATTAT 58.066 33.333 5.18 0.00 0.00 1.28
538 539 9.093970 TGTTGTATTAGACATGTCTTTTATCCG 57.906 33.333 32.14 0.00 40.93 4.18
539 540 9.095065 GTTGTATTAGACATGTCTTTTATCCGT 57.905 33.333 32.14 8.60 40.93 4.69
540 541 8.642908 TGTATTAGACATGTCTTTTATCCGTG 57.357 34.615 32.14 0.00 40.93 4.94
541 542 8.255206 TGTATTAGACATGTCTTTTATCCGTGT 58.745 33.333 32.14 7.33 40.93 4.49
542 543 9.740239 GTATTAGACATGTCTTTTATCCGTGTA 57.260 33.333 32.14 8.03 40.93 2.90
544 545 8.642908 TTAGACATGTCTTTTATCCGTGTATG 57.357 34.615 32.14 0.00 40.93 2.39
545 546 6.049149 AGACATGTCTTTTATCCGTGTATGG 58.951 40.000 22.89 0.00 36.31 2.74
546 547 5.741011 ACATGTCTTTTATCCGTGTATGGT 58.259 37.500 0.00 0.00 0.00 3.55
547 548 6.177610 ACATGTCTTTTATCCGTGTATGGTT 58.822 36.000 0.00 0.00 0.00 3.67
548 549 6.315393 ACATGTCTTTTATCCGTGTATGGTTC 59.685 38.462 0.00 0.00 0.00 3.62
549 550 5.795972 TGTCTTTTATCCGTGTATGGTTCA 58.204 37.500 0.00 0.00 0.00 3.18
550 551 6.231951 TGTCTTTTATCCGTGTATGGTTCAA 58.768 36.000 0.00 0.00 0.00 2.69
551 552 6.882140 TGTCTTTTATCCGTGTATGGTTCAAT 59.118 34.615 0.00 0.00 0.00 2.57
552 553 7.392113 TGTCTTTTATCCGTGTATGGTTCAATT 59.608 33.333 0.00 0.00 0.00 2.32
553 554 8.241367 GTCTTTTATCCGTGTATGGTTCAATTT 58.759 33.333 0.00 0.00 0.00 1.82
554 555 8.798402 TCTTTTATCCGTGTATGGTTCAATTTT 58.202 29.630 0.00 0.00 0.00 1.82
555 556 9.418045 CTTTTATCCGTGTATGGTTCAATTTTT 57.582 29.630 0.00 0.00 0.00 1.94
556 557 8.973835 TTTATCCGTGTATGGTTCAATTTTTC 57.026 30.769 0.00 0.00 0.00 2.29
557 558 5.037015 TCCGTGTATGGTTCAATTTTTCG 57.963 39.130 0.00 0.00 0.00 3.46
558 559 4.083217 TCCGTGTATGGTTCAATTTTTCGG 60.083 41.667 0.00 0.00 35.35 4.30
559 560 4.083217 CCGTGTATGGTTCAATTTTTCGGA 60.083 41.667 0.00 0.00 35.94 4.55
560 561 4.849383 CGTGTATGGTTCAATTTTTCGGAC 59.151 41.667 0.00 0.00 0.00 4.79
561 562 5.158494 GTGTATGGTTCAATTTTTCGGACC 58.842 41.667 0.00 0.00 0.00 4.46
562 563 5.048294 GTGTATGGTTCAATTTTTCGGACCT 60.048 40.000 0.00 0.00 0.00 3.85
563 564 6.149807 GTGTATGGTTCAATTTTTCGGACCTA 59.850 38.462 0.00 0.00 0.00 3.08
564 565 6.715718 TGTATGGTTCAATTTTTCGGACCTAA 59.284 34.615 0.00 0.00 0.00 2.69
565 566 6.850752 ATGGTTCAATTTTTCGGACCTAAT 57.149 33.333 0.00 0.00 0.00 1.73
566 567 6.019779 TGGTTCAATTTTTCGGACCTAATG 57.980 37.500 0.00 0.00 0.00 1.90
567 568 5.536916 TGGTTCAATTTTTCGGACCTAATGT 59.463 36.000 0.00 0.00 0.00 2.71
568 569 6.715718 TGGTTCAATTTTTCGGACCTAATGTA 59.284 34.615 0.00 0.00 0.00 2.29
569 570 7.094549 TGGTTCAATTTTTCGGACCTAATGTAG 60.095 37.037 0.00 0.00 0.00 2.74
570 571 7.094506 GGTTCAATTTTTCGGACCTAATGTAGT 60.095 37.037 0.00 0.00 0.00 2.73
571 572 7.989416 TCAATTTTTCGGACCTAATGTAGTT 57.011 32.000 0.00 0.00 0.00 2.24
572 573 8.398878 TCAATTTTTCGGACCTAATGTAGTTT 57.601 30.769 0.00 0.00 0.00 2.66
573 574 9.504708 TCAATTTTTCGGACCTAATGTAGTTTA 57.495 29.630 0.00 0.00 0.00 2.01
616 617 4.124238 TCGGCCTAAATAATACTGTGTGC 58.876 43.478 0.00 0.00 0.00 4.57
617 618 3.059868 CGGCCTAAATAATACTGTGTGCG 60.060 47.826 0.00 0.00 0.00 5.34
628 629 2.560504 ACTGTGTGCGTCATTCTTTCA 58.439 42.857 0.00 0.00 0.00 2.69
642 643 7.568679 CGTCATTCTTTCACGAAACTTCACATA 60.569 37.037 0.00 0.00 35.49 2.29
652 653 7.541091 TCACGAAACTTCACATATGAGTAGAAC 59.459 37.037 10.38 2.18 35.83 3.01
658 659 6.260271 ACTTCACATATGAGTAGAACGATCGA 59.740 38.462 24.34 0.00 35.83 3.59
667 668 5.587443 TGAGTAGAACGATCGACCAGATTTA 59.413 40.000 24.34 0.00 40.26 1.40
966 977 1.219124 CACCACCACCGATCCAGAG 59.781 63.158 0.00 0.00 0.00 3.35
973 984 3.586961 CCGATCCAGAGCGCGAGA 61.587 66.667 12.10 0.00 39.12 4.04
989 1004 1.469940 CGAGATCACGAACCTTCCAGG 60.470 57.143 6.72 0.00 37.09 4.45
1019 1034 1.201921 CGGAAATCTCAAAAGCCGACG 60.202 52.381 0.00 0.00 41.11 5.12
1241 1269 2.741228 CGCCTCATCCAGAAGAAGAAGG 60.741 54.545 0.00 0.00 0.00 3.46
1559 1587 2.266627 AACGACTTCCTCCGCGACT 61.267 57.895 8.23 0.00 0.00 4.18
1750 1778 4.838486 GAGCTGGACGAGACGCCG 62.838 72.222 0.00 0.00 0.00 6.46
2198 2235 1.452289 CTCCTCCTCGCCGAGAAGA 60.452 63.158 17.19 8.03 30.97 2.87
2212 2252 1.374252 GAAGAGCGCCGAGAACCAA 60.374 57.895 2.29 0.00 0.00 3.67
2324 2387 5.117592 GCCATTTGACGAAAATTGTTCTCTG 59.882 40.000 0.00 0.00 36.28 3.35
2450 2518 4.267536 AGTTGGGAGTGTGATGATGATTG 58.732 43.478 0.00 0.00 0.00 2.67
2459 2536 4.633126 GTGTGATGATGATTGCTAGTGTGT 59.367 41.667 0.00 0.00 0.00 3.72
2485 2562 2.342179 GTAGCAGCACTCTGTTCCTTC 58.658 52.381 0.00 0.00 42.29 3.46
2495 2590 3.456277 ACTCTGTTCCTTCTTGGACTGTT 59.544 43.478 0.00 0.00 46.14 3.16
2665 2760 5.061920 TGTGCAAAGAAAGGTAAAAACGT 57.938 34.783 0.00 0.00 0.00 3.99
2677 2772 6.628919 AGGTAAAAACGTGTGCTCTTAAAT 57.371 33.333 0.00 0.00 0.00 1.40
2680 2775 2.989422 AACGTGTGCTCTTAAATGGC 57.011 45.000 0.00 0.00 0.00 4.40
2682 2777 2.504367 ACGTGTGCTCTTAAATGGCTT 58.496 42.857 0.00 0.00 0.00 4.35
2683 2778 2.884639 ACGTGTGCTCTTAAATGGCTTT 59.115 40.909 0.00 0.00 0.00 3.51
2684 2779 3.317993 ACGTGTGCTCTTAAATGGCTTTT 59.682 39.130 3.72 3.72 0.00 2.27
2685 2780 4.202111 ACGTGTGCTCTTAAATGGCTTTTT 60.202 37.500 3.54 0.00 0.00 1.94
2747 2854 9.393249 CACACATCTTTTCTTCGCTAAAATTTA 57.607 29.630 0.00 0.00 0.00 1.40
2794 2901 9.740239 AAAAAGAAGTTATTTTTCTTCCGTACC 57.260 29.630 13.77 0.00 42.43 3.34
2795 2902 8.687292 AAAGAAGTTATTTTTCTTCCGTACCT 57.313 30.769 1.20 0.00 42.43 3.08
2796 2903 9.783081 AAAGAAGTTATTTTTCTTCCGTACCTA 57.217 29.630 1.20 0.00 42.43 3.08
2812 2922 7.669427 TCCGTACCTACTTTTTCTGATTTACA 58.331 34.615 0.00 0.00 0.00 2.41
2828 2939 3.485463 TTACAATTCATAGGGGGCTCG 57.515 47.619 0.00 0.00 0.00 5.03
2829 2940 1.213296 ACAATTCATAGGGGGCTCGT 58.787 50.000 0.00 0.00 0.00 4.18
2885 2997 0.031449 AAACACGGGGAAAATGCGTG 59.969 50.000 0.00 0.00 36.73 5.34
2919 3031 4.442706 AGCTTTGGGTCACTATATTCACG 58.557 43.478 0.00 0.00 0.00 4.35
2928 3040 5.177696 GGTCACTATATTCACGAATGCTTCC 59.822 44.000 2.48 0.00 32.50 3.46
2970 3934 2.957402 AAGGAAGGTGTCATTGAGCA 57.043 45.000 0.00 0.00 0.00 4.26
2986 3950 6.424509 TCATTGAGCACCAAATTTTCATTCAC 59.575 34.615 0.00 0.00 38.43 3.18
3026 3991 5.416271 ACGTGTATTACAAATCCTCCACT 57.584 39.130 0.00 0.00 0.00 4.00
3079 4044 3.256631 GCAGGAAGAATTGCCTTGAGAAA 59.743 43.478 0.00 0.00 36.97 2.52
3092 4057 4.321527 GCCTTGAGAAAAATGGGTGAAGAG 60.322 45.833 0.00 0.00 0.00 2.85
3102 4067 5.622346 AATGGGTGAAGAGAGGTTCTATC 57.378 43.478 0.00 0.00 34.14 2.08
3121 4086 6.644347 TCTATCCTTGAATTGAGAACCTGAC 58.356 40.000 0.00 0.00 0.00 3.51
3153 4118 3.628942 TGTGAGCTATGCCATTGATGTTC 59.371 43.478 0.00 0.00 0.00 3.18
3162 4127 4.811908 TGCCATTGATGTTCTTGTGAATG 58.188 39.130 0.00 0.00 34.40 2.67
3178 4143 8.628280 TCTTGTGAATGTGATAAACAACATTCA 58.372 29.630 21.21 21.21 44.35 2.57
3191 4156 3.198068 CAACATTCATACGAGGGAGGTG 58.802 50.000 0.00 0.00 0.00 4.00
3210 4175 3.250040 GGTGTCGTGTAAGAAATTGCTGT 59.750 43.478 0.00 0.00 0.00 4.40
3230 4195 3.309582 GGAGGGCGACATCTCCAA 58.690 61.111 1.57 0.00 46.54 3.53
3231 4196 1.144936 GGAGGGCGACATCTCCAAG 59.855 63.158 1.57 0.00 46.54 3.61
3232 4197 1.617947 GGAGGGCGACATCTCCAAGT 61.618 60.000 1.57 0.00 46.54 3.16
3233 4198 0.460987 GAGGGCGACATCTCCAAGTG 60.461 60.000 0.00 0.00 38.35 3.16
3234 4199 0.904865 AGGGCGACATCTCCAAGTGA 60.905 55.000 0.00 0.00 0.00 3.41
3235 4200 0.179000 GGGCGACATCTCCAAGTGAT 59.821 55.000 0.00 0.00 0.00 3.06
3236 4201 1.412710 GGGCGACATCTCCAAGTGATA 59.587 52.381 0.00 0.00 0.00 2.15
3237 4202 2.474816 GGCGACATCTCCAAGTGATAC 58.525 52.381 0.00 0.00 0.00 2.24
3238 4203 2.101582 GGCGACATCTCCAAGTGATACT 59.898 50.000 0.00 0.00 0.00 2.12
3239 4204 3.430929 GGCGACATCTCCAAGTGATACTT 60.431 47.826 0.00 0.00 39.39 2.24
3240 4205 3.799420 GCGACATCTCCAAGTGATACTTC 59.201 47.826 0.00 0.00 36.03 3.01
3241 4206 4.363999 CGACATCTCCAAGTGATACTTCC 58.636 47.826 0.00 0.00 36.03 3.46
3242 4207 4.363999 GACATCTCCAAGTGATACTTCCG 58.636 47.826 0.00 0.00 36.03 4.30
3243 4208 3.769844 ACATCTCCAAGTGATACTTCCGT 59.230 43.478 0.00 0.00 36.03 4.69
3244 4209 4.223032 ACATCTCCAAGTGATACTTCCGTT 59.777 41.667 0.00 0.00 36.03 4.44
3245 4210 4.884668 TCTCCAAGTGATACTTCCGTTT 57.115 40.909 0.00 0.00 36.03 3.60
3246 4211 4.566004 TCTCCAAGTGATACTTCCGTTTG 58.434 43.478 0.00 0.00 36.03 2.93
3247 4212 4.039973 TCTCCAAGTGATACTTCCGTTTGT 59.960 41.667 0.00 0.00 36.03 2.83
3258 4223 3.951680 ACTTCCGTTTGTTGATGTTTCCT 59.048 39.130 0.00 0.00 0.00 3.36
3259 4224 5.127491 ACTTCCGTTTGTTGATGTTTCCTA 58.873 37.500 0.00 0.00 0.00 2.94
3341 4308 2.889678 TCCATGCACATGCTTTGTACAA 59.110 40.909 3.59 3.59 42.66 2.41
3345 4312 4.077063 TGCACATGCTTTGTACAATACG 57.923 40.909 9.56 2.60 42.66 3.06
3350 4317 4.143200 ACATGCTTTGTACAATACGTGACG 60.143 41.667 25.64 2.24 36.57 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.795688 AATGCCCTATAGACACATGGG 57.204 47.619 0.00 0.00 40.74 4.00
4 5 5.360714 ACAAAAATGCCCTATAGACACATGG 59.639 40.000 0.00 0.00 0.00 3.66
5 6 6.127647 ACACAAAAATGCCCTATAGACACATG 60.128 38.462 0.00 0.00 0.00 3.21
6 7 5.951747 ACACAAAAATGCCCTATAGACACAT 59.048 36.000 0.00 0.00 0.00 3.21
7 8 5.182950 CACACAAAAATGCCCTATAGACACA 59.817 40.000 0.00 0.00 0.00 3.72
8 9 5.640732 CACACAAAAATGCCCTATAGACAC 58.359 41.667 0.00 0.00 0.00 3.67
9 10 4.157656 GCACACAAAAATGCCCTATAGACA 59.842 41.667 0.00 0.00 35.73 3.41
10 11 4.157656 TGCACACAAAAATGCCCTATAGAC 59.842 41.667 0.00 0.00 41.33 2.59
11 12 4.339748 TGCACACAAAAATGCCCTATAGA 58.660 39.130 0.00 0.00 41.33 1.98
12 13 4.717233 TGCACACAAAAATGCCCTATAG 57.283 40.909 0.00 0.00 41.33 1.31
13 14 5.186603 TGATTGCACACAAAAATGCCCTATA 59.813 36.000 0.00 0.00 41.33 1.31
14 15 4.020396 TGATTGCACACAAAAATGCCCTAT 60.020 37.500 0.00 0.00 41.33 2.57
15 16 3.323115 TGATTGCACACAAAAATGCCCTA 59.677 39.130 0.00 0.00 41.33 3.53
16 17 2.104451 TGATTGCACACAAAAATGCCCT 59.896 40.909 0.00 0.00 41.33 5.19
17 18 2.492012 TGATTGCACACAAAAATGCCC 58.508 42.857 0.00 0.00 41.33 5.36
18 19 3.560896 AGTTGATTGCACACAAAAATGCC 59.439 39.130 6.36 0.00 41.33 4.40
19 20 4.799419 AGTTGATTGCACACAAAAATGC 57.201 36.364 6.36 0.00 39.77 3.56
20 21 5.685068 TCGTAGTTGATTGCACACAAAAATG 59.315 36.000 6.36 4.42 39.77 2.32
21 22 5.826586 TCGTAGTTGATTGCACACAAAAAT 58.173 33.333 6.36 0.60 39.77 1.82
22 23 5.065346 TCTCGTAGTTGATTGCACACAAAAA 59.935 36.000 6.36 0.00 39.77 1.94
23 24 4.572795 TCTCGTAGTTGATTGCACACAAAA 59.427 37.500 6.36 0.00 39.77 2.44
24 25 4.123506 TCTCGTAGTTGATTGCACACAAA 58.876 39.130 6.36 0.00 39.77 2.83
25 26 3.723260 TCTCGTAGTTGATTGCACACAA 58.277 40.909 0.00 0.00 40.87 3.33
26 27 3.317150 CTCTCGTAGTTGATTGCACACA 58.683 45.455 0.00 0.00 0.00 3.72
27 28 2.668457 CCTCTCGTAGTTGATTGCACAC 59.332 50.000 0.00 0.00 0.00 3.82
28 29 2.353704 CCCTCTCGTAGTTGATTGCACA 60.354 50.000 0.00 0.00 0.00 4.57
29 30 2.271800 CCCTCTCGTAGTTGATTGCAC 58.728 52.381 0.00 0.00 0.00 4.57
30 31 1.405526 GCCCTCTCGTAGTTGATTGCA 60.406 52.381 0.00 0.00 0.00 4.08
31 32 1.291132 GCCCTCTCGTAGTTGATTGC 58.709 55.000 0.00 0.00 0.00 3.56
32 33 2.672961 TGCCCTCTCGTAGTTGATTG 57.327 50.000 0.00 0.00 0.00 2.67
33 34 3.914426 AATGCCCTCTCGTAGTTGATT 57.086 42.857 0.00 0.00 0.00 2.57
34 35 3.535561 CAAATGCCCTCTCGTAGTTGAT 58.464 45.455 0.00 0.00 0.00 2.57
35 36 2.935238 GCAAATGCCCTCTCGTAGTTGA 60.935 50.000 0.00 0.00 34.31 3.18
36 37 1.398390 GCAAATGCCCTCTCGTAGTTG 59.602 52.381 0.00 0.00 34.31 3.16
37 38 1.279271 AGCAAATGCCCTCTCGTAGTT 59.721 47.619 0.94 0.00 43.38 2.24
38 39 0.905357 AGCAAATGCCCTCTCGTAGT 59.095 50.000 0.94 0.00 43.38 2.73
39 40 1.667724 CAAGCAAATGCCCTCTCGTAG 59.332 52.381 0.94 0.00 43.38 3.51
40 41 1.277842 TCAAGCAAATGCCCTCTCGTA 59.722 47.619 0.94 0.00 43.38 3.43
41 42 0.036732 TCAAGCAAATGCCCTCTCGT 59.963 50.000 0.94 0.00 43.38 4.18
42 43 1.167851 TTCAAGCAAATGCCCTCTCG 58.832 50.000 0.94 0.00 43.38 4.04
43 44 3.665745 TTTTCAAGCAAATGCCCTCTC 57.334 42.857 0.94 0.00 43.38 3.20
61 62 7.279750 TGCCTCCTCGTAGTTTTTAATTTTT 57.720 32.000 0.00 0.00 0.00 1.94
62 63 6.887626 TGCCTCCTCGTAGTTTTTAATTTT 57.112 33.333 0.00 0.00 0.00 1.82
63 64 6.625081 GCATGCCTCCTCGTAGTTTTTAATTT 60.625 38.462 6.36 0.00 0.00 1.82
64 65 5.163652 GCATGCCTCCTCGTAGTTTTTAATT 60.164 40.000 6.36 0.00 0.00 1.40
65 66 4.335594 GCATGCCTCCTCGTAGTTTTTAAT 59.664 41.667 6.36 0.00 0.00 1.40
66 67 3.687698 GCATGCCTCCTCGTAGTTTTTAA 59.312 43.478 6.36 0.00 0.00 1.52
67 68 3.267483 GCATGCCTCCTCGTAGTTTTTA 58.733 45.455 6.36 0.00 0.00 1.52
68 69 2.084546 GCATGCCTCCTCGTAGTTTTT 58.915 47.619 6.36 0.00 0.00 1.94
69 70 1.003118 TGCATGCCTCCTCGTAGTTTT 59.997 47.619 16.68 0.00 0.00 2.43
70 71 0.613260 TGCATGCCTCCTCGTAGTTT 59.387 50.000 16.68 0.00 0.00 2.66
71 72 0.613260 TTGCATGCCTCCTCGTAGTT 59.387 50.000 16.68 0.00 0.00 2.24
72 73 0.108138 GTTGCATGCCTCCTCGTAGT 60.108 55.000 16.68 0.00 0.00 2.73
73 74 0.176680 AGTTGCATGCCTCCTCGTAG 59.823 55.000 16.68 0.00 0.00 3.51
74 75 0.613260 AAGTTGCATGCCTCCTCGTA 59.387 50.000 16.68 0.00 0.00 3.43
75 76 0.674895 GAAGTTGCATGCCTCCTCGT 60.675 55.000 16.68 0.00 0.00 4.18
76 77 1.372087 GGAAGTTGCATGCCTCCTCG 61.372 60.000 16.68 0.00 0.00 4.63
77 78 0.322816 TGGAAGTTGCATGCCTCCTC 60.323 55.000 16.68 7.21 0.00 3.71
78 79 0.333993 ATGGAAGTTGCATGCCTCCT 59.666 50.000 16.68 5.07 0.00 3.69
79 80 2.057137 TATGGAAGTTGCATGCCTCC 57.943 50.000 19.11 15.59 29.08 4.30
80 81 3.216800 TGATATGGAAGTTGCATGCCTC 58.783 45.455 19.11 12.92 29.08 4.70
81 82 3.301794 TGATATGGAAGTTGCATGCCT 57.698 42.857 19.11 2.40 29.08 4.75
82 83 3.382546 AGTTGATATGGAAGTTGCATGCC 59.617 43.478 19.11 11.01 29.08 4.40
83 84 4.644103 AGTTGATATGGAAGTTGCATGC 57.356 40.909 19.11 11.82 29.08 4.06
84 85 7.325660 ACTTAGTTGATATGGAAGTTGCATG 57.674 36.000 19.11 2.52 29.08 4.06
85 86 7.765307 CAACTTAGTTGATATGGAAGTTGCAT 58.235 34.615 19.30 14.69 45.70 3.96
86 87 7.144722 CAACTTAGTTGATATGGAAGTTGCA 57.855 36.000 19.30 0.00 45.70 4.08
100 101 9.323985 TCAAAATTTCCCATTTCAACTTAGTTG 57.676 29.630 18.12 18.12 43.99 3.16
102 103 9.492973 CATCAAAATTTCCCATTTCAACTTAGT 57.507 29.630 0.00 0.00 0.00 2.24
103 104 9.709495 TCATCAAAATTTCCCATTTCAACTTAG 57.291 29.630 0.00 0.00 0.00 2.18
104 105 9.709495 CTCATCAAAATTTCCCATTTCAACTTA 57.291 29.630 0.00 0.00 0.00 2.24
105 106 8.212995 ACTCATCAAAATTTCCCATTTCAACTT 58.787 29.630 0.00 0.00 0.00 2.66
106 107 7.738847 ACTCATCAAAATTTCCCATTTCAACT 58.261 30.769 0.00 0.00 0.00 3.16
107 108 7.967890 ACTCATCAAAATTTCCCATTTCAAC 57.032 32.000 0.00 0.00 0.00 3.18
108 109 7.992033 ACAACTCATCAAAATTTCCCATTTCAA 59.008 29.630 0.00 0.00 0.00 2.69
109 110 7.507829 ACAACTCATCAAAATTTCCCATTTCA 58.492 30.769 0.00 0.00 0.00 2.69
110 111 7.967890 ACAACTCATCAAAATTTCCCATTTC 57.032 32.000 0.00 0.00 0.00 2.17
111 112 9.657419 GATACAACTCATCAAAATTTCCCATTT 57.343 29.630 0.00 0.00 0.00 2.32
112 113 9.039165 AGATACAACTCATCAAAATTTCCCATT 57.961 29.630 0.00 0.00 0.00 3.16
113 114 8.599624 AGATACAACTCATCAAAATTTCCCAT 57.400 30.769 0.00 0.00 0.00 4.00
114 115 9.177608 CTAGATACAACTCATCAAAATTTCCCA 57.822 33.333 0.00 0.00 0.00 4.37
115 116 9.396022 TCTAGATACAACTCATCAAAATTTCCC 57.604 33.333 0.00 0.00 0.00 3.97
118 119 9.401058 CCCTCTAGATACAACTCATCAAAATTT 57.599 33.333 0.00 0.00 0.00 1.82
119 120 8.772250 TCCCTCTAGATACAACTCATCAAAATT 58.228 33.333 0.00 0.00 0.00 1.82
120 121 8.324191 TCCCTCTAGATACAACTCATCAAAAT 57.676 34.615 0.00 0.00 0.00 1.82
121 122 7.733773 TCCCTCTAGATACAACTCATCAAAA 57.266 36.000 0.00 0.00 0.00 2.44
122 123 7.733773 TTCCCTCTAGATACAACTCATCAAA 57.266 36.000 0.00 0.00 0.00 2.69
123 124 7.921041 ATTCCCTCTAGATACAACTCATCAA 57.079 36.000 0.00 0.00 0.00 2.57
124 125 9.607333 AATATTCCCTCTAGATACAACTCATCA 57.393 33.333 0.00 0.00 0.00 3.07
125 126 9.868277 CAATATTCCCTCTAGATACAACTCATC 57.132 37.037 0.00 0.00 0.00 2.92
126 127 9.386122 ACAATATTCCCTCTAGATACAACTCAT 57.614 33.333 0.00 0.00 0.00 2.90
127 128 8.642432 CACAATATTCCCTCTAGATACAACTCA 58.358 37.037 0.00 0.00 0.00 3.41
128 129 8.861086 TCACAATATTCCCTCTAGATACAACTC 58.139 37.037 0.00 0.00 0.00 3.01
129 130 8.783660 TCACAATATTCCCTCTAGATACAACT 57.216 34.615 0.00 0.00 0.00 3.16
130 131 8.861086 TCTCACAATATTCCCTCTAGATACAAC 58.139 37.037 0.00 0.00 0.00 3.32
131 132 8.861086 GTCTCACAATATTCCCTCTAGATACAA 58.139 37.037 0.00 0.00 0.00 2.41
132 133 8.004801 TGTCTCACAATATTCCCTCTAGATACA 58.995 37.037 0.00 0.00 0.00 2.29
133 134 8.410673 TGTCTCACAATATTCCCTCTAGATAC 57.589 38.462 0.00 0.00 0.00 2.24
134 135 8.448816 TCTGTCTCACAATATTCCCTCTAGATA 58.551 37.037 0.00 0.00 0.00 1.98
135 136 7.301420 TCTGTCTCACAATATTCCCTCTAGAT 58.699 38.462 0.00 0.00 0.00 1.98
136 137 6.673583 TCTGTCTCACAATATTCCCTCTAGA 58.326 40.000 0.00 0.00 0.00 2.43
137 138 6.516527 GCTCTGTCTCACAATATTCCCTCTAG 60.517 46.154 0.00 0.00 0.00 2.43
138 139 5.303078 GCTCTGTCTCACAATATTCCCTCTA 59.697 44.000 0.00 0.00 0.00 2.43
139 140 4.100808 GCTCTGTCTCACAATATTCCCTCT 59.899 45.833 0.00 0.00 0.00 3.69
140 141 4.376146 GCTCTGTCTCACAATATTCCCTC 58.624 47.826 0.00 0.00 0.00 4.30
141 142 3.135530 GGCTCTGTCTCACAATATTCCCT 59.864 47.826 0.00 0.00 0.00 4.20
142 143 3.471680 GGCTCTGTCTCACAATATTCCC 58.528 50.000 0.00 0.00 0.00 3.97
143 144 3.471680 GGGCTCTGTCTCACAATATTCC 58.528 50.000 0.00 0.00 0.00 3.01
144 145 3.135530 AGGGGCTCTGTCTCACAATATTC 59.864 47.826 0.00 0.00 0.00 1.75
145 146 3.118531 AGGGGCTCTGTCTCACAATATT 58.881 45.455 0.00 0.00 0.00 1.28
146 147 2.769209 AGGGGCTCTGTCTCACAATAT 58.231 47.619 0.00 0.00 0.00 1.28
147 148 2.254152 AGGGGCTCTGTCTCACAATA 57.746 50.000 0.00 0.00 0.00 1.90
148 149 2.114616 CTAGGGGCTCTGTCTCACAAT 58.885 52.381 0.00 0.00 0.00 2.71
149 150 1.561643 CTAGGGGCTCTGTCTCACAA 58.438 55.000 0.00 0.00 0.00 3.33
150 151 0.972983 GCTAGGGGCTCTGTCTCACA 60.973 60.000 0.00 0.00 38.06 3.58
151 152 1.681486 GGCTAGGGGCTCTGTCTCAC 61.681 65.000 0.00 0.00 41.46 3.51
152 153 1.381872 GGCTAGGGGCTCTGTCTCA 60.382 63.158 0.00 0.00 41.46 3.27
153 154 0.762461 ATGGCTAGGGGCTCTGTCTC 60.762 60.000 0.00 0.00 41.46 3.36
154 155 1.053264 CATGGCTAGGGGCTCTGTCT 61.053 60.000 0.00 0.00 41.46 3.41
155 156 1.050988 TCATGGCTAGGGGCTCTGTC 61.051 60.000 0.00 0.00 41.46 3.51
156 157 1.003442 TCATGGCTAGGGGCTCTGT 59.997 57.895 0.00 0.00 41.46 3.41
157 158 0.762082 TCTCATGGCTAGGGGCTCTG 60.762 60.000 0.00 0.00 41.46 3.35
158 159 0.471591 CTCTCATGGCTAGGGGCTCT 60.472 60.000 0.00 0.00 41.46 4.09
159 160 0.470833 TCTCTCATGGCTAGGGGCTC 60.471 60.000 0.00 0.00 41.46 4.70
160 161 0.471591 CTCTCTCATGGCTAGGGGCT 60.472 60.000 0.00 0.00 41.46 5.19
161 162 0.470833 TCTCTCTCATGGCTAGGGGC 60.471 60.000 0.00 0.00 40.90 5.80
162 163 1.337118 GTCTCTCTCATGGCTAGGGG 58.663 60.000 0.00 0.00 0.00 4.79
163 164 2.079170 TGTCTCTCTCATGGCTAGGG 57.921 55.000 0.00 0.00 0.00 3.53
164 165 4.321899 GCTAATGTCTCTCTCATGGCTAGG 60.322 50.000 0.00 0.00 0.00 3.02
165 166 4.280425 TGCTAATGTCTCTCTCATGGCTAG 59.720 45.833 0.00 0.00 0.00 3.42
166 167 4.218312 TGCTAATGTCTCTCTCATGGCTA 58.782 43.478 0.00 0.00 0.00 3.93
167 168 3.036819 TGCTAATGTCTCTCTCATGGCT 58.963 45.455 0.00 0.00 0.00 4.75
168 169 3.465742 TGCTAATGTCTCTCTCATGGC 57.534 47.619 0.00 0.00 0.00 4.40
169 170 3.801050 CGTTGCTAATGTCTCTCTCATGG 59.199 47.826 0.00 0.00 0.00 3.66
170 171 4.428209 ACGTTGCTAATGTCTCTCTCATG 58.572 43.478 0.00 0.00 0.00 3.07
171 172 4.727507 ACGTTGCTAATGTCTCTCTCAT 57.272 40.909 0.00 0.00 0.00 2.90
172 173 4.521130 AACGTTGCTAATGTCTCTCTCA 57.479 40.909 0.00 0.00 0.00 3.27
173 174 5.847670 AAAACGTTGCTAATGTCTCTCTC 57.152 39.130 0.00 0.00 0.00 3.20
193 194 1.469423 GGCGGGAACACAAACGAAAAA 60.469 47.619 0.00 0.00 0.00 1.94
194 195 0.100861 GGCGGGAACACAAACGAAAA 59.899 50.000 0.00 0.00 0.00 2.29
195 196 1.728672 GGCGGGAACACAAACGAAA 59.271 52.632 0.00 0.00 0.00 3.46
196 197 2.535788 CGGCGGGAACACAAACGAA 61.536 57.895 0.00 0.00 0.00 3.85
197 198 2.968156 CGGCGGGAACACAAACGA 60.968 61.111 0.00 0.00 0.00 3.85
198 199 4.020378 CCGGCGGGAACACAAACG 62.020 66.667 20.56 0.00 34.06 3.60
199 200 2.007113 AAACCGGCGGGAACACAAAC 62.007 55.000 31.78 0.00 36.97 2.93
200 201 1.726533 GAAACCGGCGGGAACACAAA 61.727 55.000 31.78 0.00 36.97 2.83
201 202 2.124236 AAACCGGCGGGAACACAA 60.124 55.556 31.78 0.00 36.97 3.33
202 203 2.592287 GAAACCGGCGGGAACACA 60.592 61.111 31.78 0.00 36.97 3.72
203 204 2.281276 AGAAACCGGCGGGAACAC 60.281 61.111 31.78 15.83 36.97 3.32
204 205 2.031465 GAGAAACCGGCGGGAACA 59.969 61.111 31.78 0.00 36.97 3.18
205 206 3.116531 CGAGAAACCGGCGGGAAC 61.117 66.667 31.78 19.44 36.97 3.62
206 207 3.578515 GACGAGAAACCGGCGGGAA 62.579 63.158 31.78 0.00 36.97 3.97
207 208 4.060038 GACGAGAAACCGGCGGGA 62.060 66.667 31.78 0.00 36.97 5.14
208 209 2.012902 ATAGACGAGAAACCGGCGGG 62.013 60.000 31.78 13.71 43.54 6.13
209 210 0.594284 GATAGACGAGAAACCGGCGG 60.594 60.000 27.06 27.06 43.54 6.13
210 211 0.381089 AGATAGACGAGAAACCGGCG 59.619 55.000 0.00 0.00 43.54 6.46
211 212 1.404391 TCAGATAGACGAGAAACCGGC 59.596 52.381 0.00 0.00 37.97 6.13
212 213 3.551046 CCATCAGATAGACGAGAAACCGG 60.551 52.174 0.00 0.00 0.00 5.28
213 214 3.633235 CCATCAGATAGACGAGAAACCG 58.367 50.000 0.00 0.00 0.00 4.44
214 215 3.385577 GCCATCAGATAGACGAGAAACC 58.614 50.000 0.00 0.00 0.00 3.27
215 216 3.181475 TGGCCATCAGATAGACGAGAAAC 60.181 47.826 0.00 0.00 0.00 2.78
216 217 3.031013 TGGCCATCAGATAGACGAGAAA 58.969 45.455 0.00 0.00 0.00 2.52
217 218 2.362397 GTGGCCATCAGATAGACGAGAA 59.638 50.000 9.72 0.00 0.00 2.87
218 219 1.957177 GTGGCCATCAGATAGACGAGA 59.043 52.381 9.72 0.00 0.00 4.04
219 220 1.959985 AGTGGCCATCAGATAGACGAG 59.040 52.381 9.72 0.00 0.00 4.18
220 221 2.073252 AGTGGCCATCAGATAGACGA 57.927 50.000 9.72 0.00 0.00 4.20
221 222 2.868583 CAAAGTGGCCATCAGATAGACG 59.131 50.000 9.72 0.00 0.00 4.18
222 223 3.209410 CCAAAGTGGCCATCAGATAGAC 58.791 50.000 9.72 0.00 0.00 2.59
223 224 3.565764 CCAAAGTGGCCATCAGATAGA 57.434 47.619 9.72 0.00 0.00 1.98
235 236 1.228124 TCTTCCCGTGCCAAAGTGG 60.228 57.895 0.00 0.00 41.55 4.00
236 237 1.237285 CCTCTTCCCGTGCCAAAGTG 61.237 60.000 0.00 0.00 0.00 3.16
237 238 1.073199 CCTCTTCCCGTGCCAAAGT 59.927 57.895 0.00 0.00 0.00 2.66
238 239 1.675641 CCCTCTTCCCGTGCCAAAG 60.676 63.158 0.00 0.00 0.00 2.77
239 240 1.710996 TTCCCTCTTCCCGTGCCAAA 61.711 55.000 0.00 0.00 0.00 3.28
240 241 1.710996 TTTCCCTCTTCCCGTGCCAA 61.711 55.000 0.00 0.00 0.00 4.52
241 242 2.150719 TTTCCCTCTTCCCGTGCCA 61.151 57.895 0.00 0.00 0.00 4.92
242 243 1.674651 GTTTCCCTCTTCCCGTGCC 60.675 63.158 0.00 0.00 0.00 5.01
243 244 1.674651 GGTTTCCCTCTTCCCGTGC 60.675 63.158 0.00 0.00 0.00 5.34
244 245 0.328258 ATGGTTTCCCTCTTCCCGTG 59.672 55.000 0.00 0.00 0.00 4.94
245 246 0.328258 CATGGTTTCCCTCTTCCCGT 59.672 55.000 0.00 0.00 0.00 5.28
246 247 0.328258 ACATGGTTTCCCTCTTCCCG 59.672 55.000 0.00 0.00 0.00 5.14
247 248 3.953542 ATACATGGTTTCCCTCTTCCC 57.046 47.619 0.00 0.00 0.00 3.97
248 249 6.833933 ACATTAATACATGGTTTCCCTCTTCC 59.166 38.462 0.00 0.00 0.00 3.46
249 250 7.881775 ACATTAATACATGGTTTCCCTCTTC 57.118 36.000 0.00 0.00 0.00 2.87
250 251 7.124147 CCAACATTAATACATGGTTTCCCTCTT 59.876 37.037 0.00 0.00 0.00 2.85
251 252 6.607198 CCAACATTAATACATGGTTTCCCTCT 59.393 38.462 0.00 0.00 0.00 3.69
252 253 6.605594 TCCAACATTAATACATGGTTTCCCTC 59.394 38.462 0.00 0.00 32.90 4.30
253 254 6.498538 TCCAACATTAATACATGGTTTCCCT 58.501 36.000 0.00 0.00 32.90 4.20
254 255 6.783708 TCCAACATTAATACATGGTTTCCC 57.216 37.500 0.00 0.00 32.90 3.97
255 256 7.147742 ACCATCCAACATTAATACATGGTTTCC 60.148 37.037 0.00 0.00 39.62 3.13
256 257 7.781056 ACCATCCAACATTAATACATGGTTTC 58.219 34.615 0.00 0.00 39.62 2.78
257 258 7.732222 ACCATCCAACATTAATACATGGTTT 57.268 32.000 0.00 0.00 39.62 3.27
258 259 9.077885 GATACCATCCAACATTAATACATGGTT 57.922 33.333 15.60 2.94 39.62 3.67
259 260 8.635765 GATACCATCCAACATTAATACATGGT 57.364 34.615 15.10 15.10 43.85 3.55
308 309 0.461548 TGCCACCATGAACGCAAAAA 59.538 45.000 0.00 0.00 0.00 1.94
309 310 0.678395 ATGCCACCATGAACGCAAAA 59.322 45.000 0.00 0.00 34.38 2.44
310 311 0.678395 AATGCCACCATGAACGCAAA 59.322 45.000 0.00 0.00 34.38 3.68
311 312 0.038435 CAATGCCACCATGAACGCAA 60.038 50.000 0.00 0.00 34.38 4.85
312 313 1.177895 ACAATGCCACCATGAACGCA 61.178 50.000 0.00 0.00 35.35 5.24
313 314 0.456653 GACAATGCCACCATGAACGC 60.457 55.000 0.00 0.00 0.00 4.84
314 315 1.131126 GAGACAATGCCACCATGAACG 59.869 52.381 0.00 0.00 0.00 3.95
315 316 1.131126 CGAGACAATGCCACCATGAAC 59.869 52.381 0.00 0.00 0.00 3.18
316 317 1.003003 TCGAGACAATGCCACCATGAA 59.997 47.619 0.00 0.00 0.00 2.57
317 318 0.612744 TCGAGACAATGCCACCATGA 59.387 50.000 0.00 0.00 0.00 3.07
318 319 0.729116 GTCGAGACAATGCCACCATG 59.271 55.000 0.00 0.00 0.00 3.66
319 320 0.740868 CGTCGAGACAATGCCACCAT 60.741 55.000 4.02 0.00 0.00 3.55
320 321 1.374125 CGTCGAGACAATGCCACCA 60.374 57.895 4.02 0.00 0.00 4.17
321 322 0.460284 ATCGTCGAGACAATGCCACC 60.460 55.000 0.00 0.00 0.00 4.61
322 323 0.647410 CATCGTCGAGACAATGCCAC 59.353 55.000 0.00 0.00 0.00 5.01
323 324 0.460109 CCATCGTCGAGACAATGCCA 60.460 55.000 0.00 0.00 0.00 4.92
324 325 0.179111 TCCATCGTCGAGACAATGCC 60.179 55.000 0.00 0.00 0.00 4.40
325 326 1.203928 CTCCATCGTCGAGACAATGC 58.796 55.000 0.00 0.00 0.00 3.56
326 327 1.845266 CCTCCATCGTCGAGACAATG 58.155 55.000 0.00 0.69 0.00 2.82
327 328 0.103208 GCCTCCATCGTCGAGACAAT 59.897 55.000 0.00 0.00 0.00 2.71
328 329 1.511305 GCCTCCATCGTCGAGACAA 59.489 57.895 0.00 0.00 0.00 3.18
329 330 2.761195 CGCCTCCATCGTCGAGACA 61.761 63.158 0.00 0.00 0.00 3.41
330 331 1.787057 ATCGCCTCCATCGTCGAGAC 61.787 60.000 0.00 0.00 34.30 3.36
331 332 0.250166 TATCGCCTCCATCGTCGAGA 60.250 55.000 0.00 0.00 34.30 4.04
332 333 0.805614 ATATCGCCTCCATCGTCGAG 59.194 55.000 0.00 0.00 34.30 4.04
333 334 0.803117 GATATCGCCTCCATCGTCGA 59.197 55.000 0.00 0.00 35.34 4.20
334 335 0.521735 TGATATCGCCTCCATCGTCG 59.478 55.000 0.00 0.00 0.00 5.12
335 336 2.949451 ATGATATCGCCTCCATCGTC 57.051 50.000 0.00 0.00 0.00 4.20
336 337 2.097629 CGTATGATATCGCCTCCATCGT 59.902 50.000 0.00 0.00 0.00 3.73
337 338 2.720933 CGTATGATATCGCCTCCATCG 58.279 52.381 0.00 0.00 0.00 3.84
338 339 2.464865 GCGTATGATATCGCCTCCATC 58.535 52.381 7.77 0.00 45.54 3.51
339 340 2.586258 GCGTATGATATCGCCTCCAT 57.414 50.000 7.77 0.00 45.54 3.41
346 347 6.089417 TGTGAGCTTTATTGCGTATGATATCG 59.911 38.462 0.00 0.00 38.13 2.92
347 348 7.230222 GTGTGAGCTTTATTGCGTATGATATC 58.770 38.462 0.00 0.00 38.13 1.63
348 349 6.128822 CGTGTGAGCTTTATTGCGTATGATAT 60.129 38.462 0.00 0.00 38.13 1.63
349 350 5.174943 CGTGTGAGCTTTATTGCGTATGATA 59.825 40.000 0.00 0.00 38.13 2.15
350 351 4.025730 CGTGTGAGCTTTATTGCGTATGAT 60.026 41.667 0.00 0.00 38.13 2.45
351 352 3.305897 CGTGTGAGCTTTATTGCGTATGA 59.694 43.478 0.00 0.00 38.13 2.15
352 353 3.062099 ACGTGTGAGCTTTATTGCGTATG 59.938 43.478 0.00 0.00 38.13 2.39
353 354 3.259064 ACGTGTGAGCTTTATTGCGTAT 58.741 40.909 0.00 0.00 38.13 3.06
354 355 2.664568 GACGTGTGAGCTTTATTGCGTA 59.335 45.455 0.00 0.00 38.13 4.42
355 356 1.459592 GACGTGTGAGCTTTATTGCGT 59.540 47.619 0.00 0.00 38.13 5.24
356 357 1.726791 AGACGTGTGAGCTTTATTGCG 59.273 47.619 0.00 0.00 38.13 4.85
357 358 2.736721 TGAGACGTGTGAGCTTTATTGC 59.263 45.455 0.00 0.00 0.00 3.56
358 359 6.292542 CCATATGAGACGTGTGAGCTTTATTG 60.293 42.308 3.65 0.00 0.00 1.90
359 360 5.755375 CCATATGAGACGTGTGAGCTTTATT 59.245 40.000 3.65 0.00 0.00 1.40
360 361 5.163405 ACCATATGAGACGTGTGAGCTTTAT 60.163 40.000 3.65 0.00 0.00 1.40
361 362 4.159693 ACCATATGAGACGTGTGAGCTTTA 59.840 41.667 3.65 0.00 0.00 1.85
362 363 3.055819 ACCATATGAGACGTGTGAGCTTT 60.056 43.478 3.65 0.00 0.00 3.51
363 364 2.497675 ACCATATGAGACGTGTGAGCTT 59.502 45.455 3.65 0.00 0.00 3.74
364 365 2.103373 ACCATATGAGACGTGTGAGCT 58.897 47.619 3.65 0.00 0.00 4.09
365 366 2.196749 CACCATATGAGACGTGTGAGC 58.803 52.381 3.65 0.00 0.00 4.26
366 367 3.510388 ACACCATATGAGACGTGTGAG 57.490 47.619 12.81 0.00 38.02 3.51
369 370 2.166459 CCTCACACCATATGAGACGTGT 59.834 50.000 3.65 6.96 45.46 4.49
370 371 2.166459 ACCTCACACCATATGAGACGTG 59.834 50.000 3.65 6.29 45.46 4.49
371 372 2.457598 ACCTCACACCATATGAGACGT 58.542 47.619 3.65 0.00 45.46 4.34
372 373 3.526931 AACCTCACACCATATGAGACG 57.473 47.619 3.65 0.00 45.46 4.18
373 374 5.599999 ACTAACCTCACACCATATGAGAC 57.400 43.478 3.65 0.00 45.46 3.36
374 375 7.399191 ACTTAACTAACCTCACACCATATGAGA 59.601 37.037 3.65 0.00 45.46 3.27
375 376 7.556844 ACTTAACTAACCTCACACCATATGAG 58.443 38.462 3.65 0.00 42.79 2.90
376 377 7.490657 ACTTAACTAACCTCACACCATATGA 57.509 36.000 3.65 0.00 0.00 2.15
377 378 8.450964 CAAACTTAACTAACCTCACACCATATG 58.549 37.037 0.00 0.00 0.00 1.78
378 379 8.161425 ACAAACTTAACTAACCTCACACCATAT 58.839 33.333 0.00 0.00 0.00 1.78
379 380 7.511268 ACAAACTTAACTAACCTCACACCATA 58.489 34.615 0.00 0.00 0.00 2.74
380 381 6.362248 ACAAACTTAACTAACCTCACACCAT 58.638 36.000 0.00 0.00 0.00 3.55
381 382 5.747342 ACAAACTTAACTAACCTCACACCA 58.253 37.500 0.00 0.00 0.00 4.17
382 383 6.762661 TGTACAAACTTAACTAACCTCACACC 59.237 38.462 0.00 0.00 0.00 4.16
383 384 7.775397 TGTACAAACTTAACTAACCTCACAC 57.225 36.000 0.00 0.00 0.00 3.82
384 385 7.011669 GCTTGTACAAACTTAACTAACCTCACA 59.988 37.037 10.03 0.00 0.00 3.58
385 386 7.226128 AGCTTGTACAAACTTAACTAACCTCAC 59.774 37.037 10.03 0.00 0.00 3.51
386 387 7.277396 AGCTTGTACAAACTTAACTAACCTCA 58.723 34.615 10.03 0.00 0.00 3.86
387 388 7.725818 AGCTTGTACAAACTTAACTAACCTC 57.274 36.000 10.03 0.00 0.00 3.85
388 389 9.269453 CTAAGCTTGTACAAACTTAACTAACCT 57.731 33.333 24.38 6.23 31.14 3.50
389 390 9.049523 ACTAAGCTTGTACAAACTTAACTAACC 57.950 33.333 24.38 0.00 31.14 2.85
393 394 8.953313 ACAAACTAAGCTTGTACAAACTTAACT 58.047 29.630 24.38 15.29 35.26 2.24
394 395 9.218359 GACAAACTAAGCTTGTACAAACTTAAC 57.782 33.333 24.38 12.58 37.14 2.01
395 396 8.117988 CGACAAACTAAGCTTGTACAAACTTAA 58.882 33.333 24.38 13.29 37.14 1.85
396 397 7.278424 ACGACAAACTAAGCTTGTACAAACTTA 59.722 33.333 23.38 23.38 37.14 2.24
397 398 6.093082 ACGACAAACTAAGCTTGTACAAACTT 59.907 34.615 23.62 23.62 37.14 2.66
398 399 5.583457 ACGACAAACTAAGCTTGTACAAACT 59.417 36.000 9.86 7.78 37.14 2.66
399 400 5.675444 CACGACAAACTAAGCTTGTACAAAC 59.325 40.000 9.86 5.23 37.14 2.93
400 401 5.220700 CCACGACAAACTAAGCTTGTACAAA 60.221 40.000 9.86 0.00 37.14 2.83
401 402 4.271533 CCACGACAAACTAAGCTTGTACAA 59.728 41.667 9.86 8.28 37.14 2.41
402 403 3.805422 CCACGACAAACTAAGCTTGTACA 59.195 43.478 9.86 0.00 37.14 2.90
403 404 3.363673 GCCACGACAAACTAAGCTTGTAC 60.364 47.826 9.86 0.00 37.14 2.90
404 405 2.803956 GCCACGACAAACTAAGCTTGTA 59.196 45.455 9.86 0.00 37.14 2.41
405 406 1.602377 GCCACGACAAACTAAGCTTGT 59.398 47.619 9.86 0.00 39.69 3.16
406 407 1.069227 GGCCACGACAAACTAAGCTTG 60.069 52.381 9.86 1.57 0.00 4.01
407 408 1.202770 AGGCCACGACAAACTAAGCTT 60.203 47.619 5.01 3.48 0.00 3.74
408 409 0.396811 AGGCCACGACAAACTAAGCT 59.603 50.000 5.01 0.00 0.00 3.74
409 410 1.235724 AAGGCCACGACAAACTAAGC 58.764 50.000 5.01 0.00 0.00 3.09
410 411 3.304458 GGAAAAGGCCACGACAAACTAAG 60.304 47.826 5.01 0.00 0.00 2.18
411 412 2.619646 GGAAAAGGCCACGACAAACTAA 59.380 45.455 5.01 0.00 0.00 2.24
412 413 2.158726 AGGAAAAGGCCACGACAAACTA 60.159 45.455 5.01 0.00 0.00 2.24
413 414 1.029681 GGAAAAGGCCACGACAAACT 58.970 50.000 5.01 0.00 0.00 2.66
414 415 1.029681 AGGAAAAGGCCACGACAAAC 58.970 50.000 5.01 0.00 0.00 2.93
415 416 1.770294 AAGGAAAAGGCCACGACAAA 58.230 45.000 5.01 0.00 0.00 2.83
416 417 1.407258 CAAAGGAAAAGGCCACGACAA 59.593 47.619 5.01 0.00 0.00 3.18
417 418 1.028905 CAAAGGAAAAGGCCACGACA 58.971 50.000 5.01 0.00 0.00 4.35
418 419 1.266989 CTCAAAGGAAAAGGCCACGAC 59.733 52.381 5.01 0.00 0.00 4.34
419 420 1.604604 CTCAAAGGAAAAGGCCACGA 58.395 50.000 5.01 0.00 0.00 4.35
420 421 0.039165 GCTCAAAGGAAAAGGCCACG 60.039 55.000 5.01 0.00 0.00 4.94
421 422 0.318441 GGCTCAAAGGAAAAGGCCAC 59.682 55.000 5.01 0.00 39.38 5.01
422 423 0.188342 AGGCTCAAAGGAAAAGGCCA 59.812 50.000 5.01 0.00 41.71 5.36
423 424 1.001293 CAAGGCTCAAAGGAAAAGGCC 59.999 52.381 0.00 0.00 39.82 5.19
424 425 1.688735 ACAAGGCTCAAAGGAAAAGGC 59.311 47.619 0.00 0.00 35.94 4.35
425 426 3.384467 TCAACAAGGCTCAAAGGAAAAGG 59.616 43.478 0.00 0.00 0.00 3.11
426 427 4.654091 TCAACAAGGCTCAAAGGAAAAG 57.346 40.909 0.00 0.00 0.00 2.27
427 428 5.413309 TTTCAACAAGGCTCAAAGGAAAA 57.587 34.783 0.00 0.00 0.00 2.29
428 429 5.046663 ACTTTTCAACAAGGCTCAAAGGAAA 60.047 36.000 0.00 0.00 0.00 3.13
429 430 4.466015 ACTTTTCAACAAGGCTCAAAGGAA 59.534 37.500 0.00 0.00 0.00 3.36
430 431 4.023291 ACTTTTCAACAAGGCTCAAAGGA 58.977 39.130 0.00 0.00 0.00 3.36
431 432 4.391405 ACTTTTCAACAAGGCTCAAAGG 57.609 40.909 0.00 0.00 0.00 3.11
432 433 5.890334 TGTACTTTTCAACAAGGCTCAAAG 58.110 37.500 0.00 0.00 0.00 2.77
433 434 5.906113 TGTACTTTTCAACAAGGCTCAAA 57.094 34.783 0.00 0.00 0.00 2.69
434 435 5.906113 TTGTACTTTTCAACAAGGCTCAA 57.094 34.783 0.00 0.00 32.11 3.02
435 436 5.906113 TTTGTACTTTTCAACAAGGCTCA 57.094 34.783 0.00 0.00 36.96 4.26
436 437 6.756542 ACATTTTGTACTTTTCAACAAGGCTC 59.243 34.615 0.00 0.00 36.96 4.70
437 438 6.639563 ACATTTTGTACTTTTCAACAAGGCT 58.360 32.000 0.00 0.00 36.96 4.58
438 439 6.902224 ACATTTTGTACTTTTCAACAAGGC 57.098 33.333 0.00 0.00 36.96 4.35
453 454 8.846211 ACAGTAGCTACATGTTTTACATTTTGT 58.154 29.630 25.28 12.30 36.53 2.83
454 455 9.329913 GACAGTAGCTACATGTTTTACATTTTG 57.670 33.333 25.28 11.69 36.53 2.44
455 456 9.062524 TGACAGTAGCTACATGTTTTACATTTT 57.937 29.630 25.28 0.00 36.53 1.82
456 457 8.615878 TGACAGTAGCTACATGTTTTACATTT 57.384 30.769 25.28 0.00 36.53 2.32
457 458 8.504005 GTTGACAGTAGCTACATGTTTTACATT 58.496 33.333 25.28 0.00 36.53 2.71
458 459 7.148639 CGTTGACAGTAGCTACATGTTTTACAT 60.149 37.037 25.28 0.00 39.91 2.29
459 460 6.144886 CGTTGACAGTAGCTACATGTTTTACA 59.855 38.462 25.28 15.57 0.00 2.41
460 461 6.364165 TCGTTGACAGTAGCTACATGTTTTAC 59.636 38.462 25.28 19.14 0.00 2.01
461 462 6.448852 TCGTTGACAGTAGCTACATGTTTTA 58.551 36.000 25.28 13.07 0.00 1.52
462 463 5.294356 TCGTTGACAGTAGCTACATGTTTT 58.706 37.500 25.28 0.67 0.00 2.43
463 464 4.878439 TCGTTGACAGTAGCTACATGTTT 58.122 39.130 25.28 1.45 0.00 2.83
464 465 4.022242 ACTCGTTGACAGTAGCTACATGTT 60.022 41.667 25.28 6.46 0.00 2.71
465 466 3.506455 ACTCGTTGACAGTAGCTACATGT 59.494 43.478 25.28 23.04 0.00 3.21
466 467 4.098055 ACTCGTTGACAGTAGCTACATG 57.902 45.455 25.28 20.38 0.00 3.21
467 468 4.217767 TGAACTCGTTGACAGTAGCTACAT 59.782 41.667 25.28 13.18 0.00 2.29
468 469 3.566742 TGAACTCGTTGACAGTAGCTACA 59.433 43.478 25.28 1.93 0.00 2.74
469 470 4.156664 TGAACTCGTTGACAGTAGCTAC 57.843 45.455 16.43 16.43 0.00 3.58
470 471 4.841443 TTGAACTCGTTGACAGTAGCTA 57.159 40.909 0.00 0.00 0.00 3.32
471 472 3.728076 TTGAACTCGTTGACAGTAGCT 57.272 42.857 0.00 0.00 0.00 3.32
472 473 4.992381 ATTTGAACTCGTTGACAGTAGC 57.008 40.909 0.00 0.00 0.00 3.58
473 474 7.971168 AGATCTATTTGAACTCGTTGACAGTAG 59.029 37.037 0.00 0.00 0.00 2.57
474 475 7.755373 CAGATCTATTTGAACTCGTTGACAGTA 59.245 37.037 0.00 0.00 0.00 2.74
475 476 6.587990 CAGATCTATTTGAACTCGTTGACAGT 59.412 38.462 0.00 0.00 0.00 3.55
476 477 6.808704 TCAGATCTATTTGAACTCGTTGACAG 59.191 38.462 0.00 0.00 0.00 3.51
477 478 6.687604 TCAGATCTATTTGAACTCGTTGACA 58.312 36.000 0.00 0.00 0.00 3.58
478 479 7.616673 CATCAGATCTATTTGAACTCGTTGAC 58.383 38.462 0.00 0.00 0.00 3.18
479 480 6.256539 GCATCAGATCTATTTGAACTCGTTGA 59.743 38.462 0.00 0.00 0.00 3.18
480 481 6.036408 TGCATCAGATCTATTTGAACTCGTTG 59.964 38.462 0.00 0.00 0.00 4.10
481 482 6.108687 TGCATCAGATCTATTTGAACTCGTT 58.891 36.000 0.00 0.00 0.00 3.85
482 483 5.664457 TGCATCAGATCTATTTGAACTCGT 58.336 37.500 0.00 0.00 0.00 4.18
483 484 6.782298 ATGCATCAGATCTATTTGAACTCG 57.218 37.500 0.00 0.00 0.00 4.18
512 513 9.093970 CGGATAAAAGACATGTCTAATACAACA 57.906 33.333 28.10 8.66 42.70 3.33
513 514 9.095065 ACGGATAAAAGACATGTCTAATACAAC 57.905 33.333 28.10 14.58 42.70 3.32
514 515 9.093970 CACGGATAAAAGACATGTCTAATACAA 57.906 33.333 28.10 11.42 42.70 2.41
515 516 8.255206 ACACGGATAAAAGACATGTCTAATACA 58.745 33.333 28.10 12.44 43.86 2.29
516 517 8.644318 ACACGGATAAAAGACATGTCTAATAC 57.356 34.615 28.10 19.75 39.39 1.89
518 519 9.261180 CATACACGGATAAAAGACATGTCTAAT 57.739 33.333 28.10 20.42 39.39 1.73
519 520 7.709182 CCATACACGGATAAAAGACATGTCTAA 59.291 37.037 28.10 16.82 39.39 2.10
520 521 7.147794 ACCATACACGGATAAAAGACATGTCTA 60.148 37.037 28.10 13.85 39.39 2.59
521 522 6.049149 CCATACACGGATAAAAGACATGTCT 58.951 40.000 22.89 22.89 42.75 3.41
522 523 5.815740 ACCATACACGGATAAAAGACATGTC 59.184 40.000 18.47 18.47 0.00 3.06
523 524 5.741011 ACCATACACGGATAAAAGACATGT 58.259 37.500 0.00 0.00 0.00 3.21
524 525 6.315144 TGAACCATACACGGATAAAAGACATG 59.685 38.462 0.00 0.00 0.00 3.21
525 526 6.411376 TGAACCATACACGGATAAAAGACAT 58.589 36.000 0.00 0.00 0.00 3.06
526 527 5.795972 TGAACCATACACGGATAAAAGACA 58.204 37.500 0.00 0.00 0.00 3.41
527 528 6.730960 TTGAACCATACACGGATAAAAGAC 57.269 37.500 0.00 0.00 0.00 3.01
528 529 7.931578 AATTGAACCATACACGGATAAAAGA 57.068 32.000 0.00 0.00 0.00 2.52
529 530 8.980143 AAAATTGAACCATACACGGATAAAAG 57.020 30.769 0.00 0.00 0.00 2.27
530 531 9.413048 GAAAAATTGAACCATACACGGATAAAA 57.587 29.630 0.00 0.00 0.00 1.52
531 532 7.751348 CGAAAAATTGAACCATACACGGATAAA 59.249 33.333 0.00 0.00 0.00 1.40
532 533 7.244898 CGAAAAATTGAACCATACACGGATAA 58.755 34.615 0.00 0.00 0.00 1.75
533 534 6.183360 CCGAAAAATTGAACCATACACGGATA 60.183 38.462 0.00 0.00 38.09 2.59
534 535 5.392595 CCGAAAAATTGAACCATACACGGAT 60.393 40.000 0.00 0.00 38.09 4.18
535 536 4.083217 CCGAAAAATTGAACCATACACGGA 60.083 41.667 0.00 0.00 38.09 4.69
536 537 4.083217 TCCGAAAAATTGAACCATACACGG 60.083 41.667 0.00 0.00 37.37 4.94
537 538 4.849383 GTCCGAAAAATTGAACCATACACG 59.151 41.667 0.00 0.00 0.00 4.49
538 539 5.048294 AGGTCCGAAAAATTGAACCATACAC 60.048 40.000 0.00 0.00 0.00 2.90
539 540 5.074115 AGGTCCGAAAAATTGAACCATACA 58.926 37.500 0.00 0.00 0.00 2.29
540 541 5.638596 AGGTCCGAAAAATTGAACCATAC 57.361 39.130 0.00 0.00 0.00 2.39
541 542 7.394923 ACATTAGGTCCGAAAAATTGAACCATA 59.605 33.333 0.00 0.00 0.00 2.74
542 543 6.210584 ACATTAGGTCCGAAAAATTGAACCAT 59.789 34.615 0.00 0.00 0.00 3.55
543 544 5.536916 ACATTAGGTCCGAAAAATTGAACCA 59.463 36.000 0.00 0.00 0.00 3.67
544 545 6.020971 ACATTAGGTCCGAAAAATTGAACC 57.979 37.500 0.00 0.00 0.00 3.62
545 546 7.813645 ACTACATTAGGTCCGAAAAATTGAAC 58.186 34.615 0.00 0.00 0.00 3.18
546 547 7.989416 ACTACATTAGGTCCGAAAAATTGAA 57.011 32.000 0.00 0.00 0.00 2.69
547 548 7.989416 AACTACATTAGGTCCGAAAAATTGA 57.011 32.000 0.00 0.00 0.00 2.57
588 589 9.398538 ACACAGTATTATTTAGGCCGATTTTAA 57.601 29.630 0.00 0.00 0.00 1.52
589 590 8.832521 CACACAGTATTATTTAGGCCGATTTTA 58.167 33.333 0.00 0.00 0.00 1.52
590 591 7.681065 GCACACAGTATTATTTAGGCCGATTTT 60.681 37.037 0.00 0.00 0.00 1.82
591 592 6.238648 GCACACAGTATTATTTAGGCCGATTT 60.239 38.462 0.00 0.00 0.00 2.17
592 593 5.238650 GCACACAGTATTATTTAGGCCGATT 59.761 40.000 0.00 0.00 0.00 3.34
593 594 4.755123 GCACACAGTATTATTTAGGCCGAT 59.245 41.667 0.00 0.00 0.00 4.18
594 595 4.124238 GCACACAGTATTATTTAGGCCGA 58.876 43.478 0.00 0.00 0.00 5.54
595 596 3.059868 CGCACACAGTATTATTTAGGCCG 60.060 47.826 0.00 0.00 0.00 6.13
596 597 3.875134 ACGCACACAGTATTATTTAGGCC 59.125 43.478 0.00 0.00 0.00 5.19
597 598 4.569162 TGACGCACACAGTATTATTTAGGC 59.431 41.667 0.00 0.00 0.00 3.93
598 599 6.844696 ATGACGCACACAGTATTATTTAGG 57.155 37.500 0.00 0.00 0.00 2.69
599 600 8.131455 AGAATGACGCACACAGTATTATTTAG 57.869 34.615 0.00 0.00 0.00 1.85
600 601 8.487313 AAGAATGACGCACACAGTATTATTTA 57.513 30.769 0.00 0.00 0.00 1.40
601 602 6.985188 AGAATGACGCACACAGTATTATTT 57.015 33.333 0.00 0.00 0.00 1.40
602 603 6.985188 AAGAATGACGCACACAGTATTATT 57.015 33.333 0.00 0.00 0.00 1.40
603 604 6.593770 TGAAAGAATGACGCACACAGTATTAT 59.406 34.615 0.00 0.00 0.00 1.28
610 611 1.260297 CGTGAAAGAATGACGCACACA 59.740 47.619 0.00 0.00 0.00 3.72
616 617 4.898488 GTGAAGTTTCGTGAAAGAATGACG 59.102 41.667 0.00 0.00 34.38 4.35
617 618 5.806286 TGTGAAGTTTCGTGAAAGAATGAC 58.194 37.500 0.00 0.00 0.00 3.06
628 629 6.527023 CGTTCTACTCATATGTGAAGTTTCGT 59.473 38.462 11.60 0.00 33.05 3.85
642 643 3.542648 TCTGGTCGATCGTTCTACTCAT 58.457 45.455 15.94 0.00 0.00 2.90
652 653 4.878439 TGGGTATTAAATCTGGTCGATCG 58.122 43.478 9.36 9.36 0.00 3.69
695 697 5.564259 GCCAATGTGGATGAATAGCAAGATC 60.564 44.000 0.00 0.00 40.96 2.75
696 698 4.280174 GCCAATGTGGATGAATAGCAAGAT 59.720 41.667 0.00 0.00 40.96 2.40
698 700 3.549423 CGCCAATGTGGATGAATAGCAAG 60.549 47.826 0.00 0.00 40.96 4.01
916 924 4.856607 GGAGGAGCGAGCGAACCG 62.857 72.222 0.00 0.00 0.00 4.44
1185 1213 3.219928 GGAGGCGCTGGATCTCGA 61.220 66.667 7.64 0.00 0.00 4.04
1215 1243 2.657102 CTTCTGGATGAGGCGCTCCC 62.657 65.000 7.64 2.15 0.00 4.30
1357 1385 3.745803 GACGACTCCCGCGAACCT 61.746 66.667 8.23 0.00 43.32 3.50
1364 1392 4.517703 GAGCGACGACGACTCCCG 62.518 72.222 12.29 0.00 42.66 5.14
1519 1547 4.880426 TGGCCCTCCCCGATCTCC 62.880 72.222 0.00 0.00 0.00 3.71
1534 1562 0.037232 GGAGGAAGTCGTTGGTCTGG 60.037 60.000 0.00 0.00 0.00 3.86
2324 2387 4.218417 TCTTTATCAGCCAACAAGAAAGCC 59.782 41.667 0.00 0.00 0.00 4.35
2428 2491 4.267536 CAATCATCATCACACTCCCAACT 58.732 43.478 0.00 0.00 0.00 3.16
2450 2518 2.400399 TGCTACGTTCAACACACTAGC 58.600 47.619 0.00 0.00 0.00 3.42
2459 2536 1.068588 ACAGAGTGCTGCTACGTTCAA 59.931 47.619 0.00 0.00 46.26 2.69
2495 2590 4.515191 CCTGTGATTTTGTTTCTTCGAGGA 59.485 41.667 0.00 0.00 0.00 3.71
2532 2627 6.640499 TCTCGGACGAACTTAAAACGAATTTA 59.360 34.615 0.00 0.00 32.27 1.40
2601 2696 4.953269 TCGACGAAAATTTACATGCAGTC 58.047 39.130 0.00 0.00 0.00 3.51
2657 2752 5.009210 AGCCATTTAAGAGCACACGTTTTTA 59.991 36.000 0.00 0.00 0.00 1.52
2773 2880 8.768957 AGTAGGTACGGAAGAAAAATAACTTC 57.231 34.615 0.00 0.00 40.91 3.01
2779 2886 8.565416 CAGAAAAAGTAGGTACGGAAGAAAAAT 58.435 33.333 0.00 0.00 0.00 1.82
2785 2892 7.668525 AAATCAGAAAAAGTAGGTACGGAAG 57.331 36.000 0.00 0.00 0.00 3.46
2787 2894 7.669427 TGTAAATCAGAAAAAGTAGGTACGGA 58.331 34.615 0.00 0.00 0.00 4.69
2812 2922 2.690840 AGTACGAGCCCCCTATGAATT 58.309 47.619 0.00 0.00 0.00 2.17
2828 2939 4.631813 ACCGAGATGCTGAAATTCAAGTAC 59.368 41.667 0.00 0.00 0.00 2.73
2829 2940 4.631377 CACCGAGATGCTGAAATTCAAGTA 59.369 41.667 0.00 0.00 0.00 2.24
2885 2997 1.407979 CCCAAAGCTCATCCTTCATGC 59.592 52.381 0.00 0.00 31.70 4.06
2961 3925 6.424509 GTGAATGAAAATTTGGTGCTCAATGA 59.575 34.615 0.00 0.00 34.98 2.57
2970 3934 6.260714 GCTTTTGAGGTGAATGAAAATTTGGT 59.739 34.615 0.00 0.00 0.00 3.67
2986 3950 4.035017 CACGTTGTACTTTGCTTTTGAGG 58.965 43.478 0.00 0.00 0.00 3.86
3042 4007 4.766891 TCTTCCTGCCCTTCTAATGTTTTG 59.233 41.667 0.00 0.00 0.00 2.44
3049 4014 3.356290 GCAATTCTTCCTGCCCTTCTAA 58.644 45.455 0.00 0.00 32.18 2.10
3079 4044 5.104318 GGATAGAACCTCTCTTCACCCATTT 60.104 44.000 0.00 0.00 35.41 2.32
3092 4057 7.546778 GTTCTCAATTCAAGGATAGAACCTC 57.453 40.000 0.00 0.00 39.62 3.85
3102 4067 3.664107 TCGTCAGGTTCTCAATTCAAGG 58.336 45.455 0.00 0.00 0.00 3.61
3153 4118 8.800231 TGAATGTTGTTTATCACATTCACAAG 57.200 30.769 19.06 0.00 42.34 3.16
3162 4127 6.537301 TCCCTCGTATGAATGTTGTTTATCAC 59.463 38.462 0.00 0.00 0.00 3.06
3178 4143 0.323178 ACACGACACCTCCCTCGTAT 60.323 55.000 0.00 0.00 41.13 3.06
3191 4156 4.377431 CCAGACAGCAATTTCTTACACGAC 60.377 45.833 0.00 0.00 0.00 4.34
3210 4175 1.758514 GGAGATGTCGCCCTCCAGA 60.759 63.158 0.00 0.00 46.28 3.86
3235 4200 7.254863 GTTAGGAAACATCAACAAACGGAAGTA 60.255 37.037 0.00 0.00 38.42 2.24
3236 4201 6.459161 GTTAGGAAACATCAACAAACGGAAGT 60.459 38.462 0.00 0.00 40.13 3.01
3237 4202 4.568152 AGGAAACATCAACAAACGGAAG 57.432 40.909 0.00 0.00 0.00 3.46
3238 4203 5.504337 CGTTAGGAAACATCAACAAACGGAA 60.504 40.000 0.00 0.00 35.94 4.30
3239 4204 4.024725 CGTTAGGAAACATCAACAAACGGA 60.025 41.667 0.00 0.00 35.94 4.69
3240 4205 4.215965 CGTTAGGAAACATCAACAAACGG 58.784 43.478 0.00 0.00 35.94 4.44
3241 4206 3.662186 GCGTTAGGAAACATCAACAAACG 59.338 43.478 0.00 0.00 40.85 3.60
3242 4207 4.602995 TGCGTTAGGAAACATCAACAAAC 58.397 39.130 0.00 0.00 35.16 2.93
3243 4208 4.902443 TGCGTTAGGAAACATCAACAAA 57.098 36.364 0.00 0.00 35.16 2.83
3244 4209 4.498345 GGTTGCGTTAGGAAACATCAACAA 60.498 41.667 17.38 0.00 43.39 2.83
3245 4210 3.003897 GGTTGCGTTAGGAAACATCAACA 59.996 43.478 17.38 0.00 43.39 3.33
3246 4211 3.003897 TGGTTGCGTTAGGAAACATCAAC 59.996 43.478 11.65 11.65 40.53 3.18
3247 4212 3.215151 TGGTTGCGTTAGGAAACATCAA 58.785 40.909 0.00 0.00 40.53 2.57
3258 4223 1.463056 CTTGCGAAGATGGTTGCGTTA 59.537 47.619 0.00 0.00 0.00 3.18
3259 4224 0.238289 CTTGCGAAGATGGTTGCGTT 59.762 50.000 0.00 0.00 0.00 4.84
3305 4270 2.485903 CATGGAGATCTCTCTTGCAGC 58.514 52.381 21.81 3.72 42.48 5.25
3341 4308 2.803817 GGGGCCCATCGTCACGTAT 61.804 63.158 26.86 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.