Multiple sequence alignment - TraesCS4A01G275100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G275100 chr4A 100.000 4403 0 0 1 4403 584523528 584519126 0.000000e+00 8131
1 TraesCS4A01G275100 chr4A 97.297 111 3 0 4193 4303 381221437 381221327 5.810000e-44 189
2 TraesCS4A01G275100 chr4D 94.099 2779 126 25 942 3693 15967294 15964527 0.000000e+00 4189
3 TraesCS4A01G275100 chr4D 89.648 483 36 8 475 947 401093359 401092881 1.750000e-168 603
4 TraesCS4A01G275100 chr4D 95.330 364 17 0 5 368 16007259 16006896 2.950000e-161 579
5 TraesCS4A01G275100 chr4D 92.800 125 5 3 4179 4303 483110123 483110243 1.260000e-40 178
6 TraesCS4A01G275100 chr4D 95.775 71 3 0 384 454 16006854 16006784 1.000000e-21 115
7 TraesCS4A01G275100 chr4B 95.035 2578 111 9 942 3511 27796848 27794280 0.000000e+00 4036
8 TraesCS4A01G275100 chr4B 94.823 367 19 0 2 368 27797743 27797377 1.370000e-159 573
9 TraesCS4A01G275100 chr4B 84.110 472 34 17 3572 4035 27794167 27793729 6.810000e-113 418
10 TraesCS4A01G275100 chr4B 93.137 102 6 1 4303 4403 27793544 27793443 9.870000e-32 148
11 TraesCS4A01G275100 chr4B 95.349 86 3 1 384 469 27797292 27797208 7.680000e-28 135
12 TraesCS4A01G275100 chrUn 90.364 467 34 5 475 932 10764191 10764655 1.750000e-168 603
13 TraesCS4A01G275100 chrUn 89.485 485 35 10 475 947 320692475 320692955 2.270000e-167 599
14 TraesCS4A01G275100 chrUn 98.165 109 2 0 4195 4303 11239798 11239906 1.620000e-44 191
15 TraesCS4A01G275100 chr3D 89.691 485 31 10 475 947 160797321 160797798 6.300000e-168 601
16 TraesCS4A01G275100 chr3D 89.278 485 37 9 475 947 607327088 607326607 1.050000e-165 593
17 TraesCS4A01G275100 chr3D 96.491 114 4 0 4197 4310 308274907 308275020 5.810000e-44 189
18 TraesCS4A01G275100 chr5D 89.278 485 38 8 475 947 212927233 212926751 2.930000e-166 595
19 TraesCS4A01G275100 chr5D 89.278 485 38 8 475 947 212952667 212952185 2.930000e-166 595
20 TraesCS4A01G275100 chr5D 89.300 486 37 9 475 947 213033602 213033119 2.930000e-166 595
21 TraesCS4A01G275100 chr5D 89.278 485 36 10 475 947 35487666 35488146 1.050000e-165 593
22 TraesCS4A01G275100 chr5B 96.552 116 3 1 4189 4303 278886871 278886986 1.620000e-44 191
23 TraesCS4A01G275100 chr1D 98.165 109 2 0 4195 4303 440942567 440942675 1.620000e-44 191
24 TraesCS4A01G275100 chr1D 97.297 111 3 0 4193 4303 227655307 227655417 5.810000e-44 189
25 TraesCS4A01G275100 chr7D 97.297 111 3 0 4193 4303 248393402 248393512 5.810000e-44 189
26 TraesCS4A01G275100 chr3B 93.600 125 6 2 4194 4317 12156858 12156981 7.520000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G275100 chr4A 584519126 584523528 4402 True 8131 8131 100.0000 1 4403 1 chr4A.!!$R2 4402
1 TraesCS4A01G275100 chr4D 15964527 15967294 2767 True 4189 4189 94.0990 942 3693 1 chr4D.!!$R1 2751
2 TraesCS4A01G275100 chr4B 27793443 27797743 4300 True 1062 4036 92.4908 2 4403 5 chr4B.!!$R1 4401

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 998 0.246360 TGGTGACATGGCGTAGTCTG 59.754 55.0 0.00 0.0 35.81 3.51 F
929 999 0.246635 GGTGACATGGCGTAGTCTGT 59.753 55.0 0.00 0.0 35.81 3.41 F
1691 1767 0.524862 CTCCACCACAATGCTCTTGC 59.475 55.0 0.26 0.0 40.20 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 1968 0.251165 AAACACCTTACGGGCTGCAT 60.251 50.0 0.50 0.0 39.1 3.96 R
2673 2749 1.213296 TGGAGCTCTGTAAATCCCCC 58.787 55.0 14.64 0.0 0.0 5.40 R
3601 3753 0.597568 TGCTCAAAATCGTTGGCCAG 59.402 50.0 5.11 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.533625 GCTTTGTCAGGCATACACCA 58.466 50.000 0.00 0.00 0.00 4.17
42 43 6.540189 GTCAGGCATACACCAATATGATATCC 59.460 42.308 0.00 0.00 34.94 2.59
152 153 6.429385 GGATAGATAGAAAATGGTTCTGCAGG 59.571 42.308 15.13 0.00 0.00 4.85
200 201 4.200838 TCCTCACAAAATCGCTACATCA 57.799 40.909 0.00 0.00 0.00 3.07
207 208 7.811653 TCACAAAATCGCTACATCAAAATACA 58.188 30.769 0.00 0.00 0.00 2.29
227 228 0.307146 GAATCATGCTTCTCGGCTGC 59.693 55.000 2.00 0.00 0.00 5.25
291 292 5.774690 ACCTTGGAAAAAGATCAGCATTGTA 59.225 36.000 0.00 0.00 0.00 2.41
297 298 6.749118 GGAAAAAGATCAGCATTGTACATGTC 59.251 38.462 0.00 0.00 0.00 3.06
298 299 6.822667 AAAAGATCAGCATTGTACATGTCA 57.177 33.333 0.00 0.00 0.00 3.58
309 310 6.744537 GCATTGTACATGTCATCACTTCTTTC 59.255 38.462 0.00 0.00 0.00 2.62
363 364 0.451383 TGCTCCCAAATGCGATTTCG 59.549 50.000 0.00 0.00 43.27 3.46
375 376 2.776694 CGATTTCGCTCACAAGTCTG 57.223 50.000 0.00 0.00 0.00 3.51
376 377 2.328473 CGATTTCGCTCACAAGTCTGA 58.672 47.619 0.00 0.00 0.00 3.27
377 378 2.926200 CGATTTCGCTCACAAGTCTGAT 59.074 45.455 0.00 0.00 0.00 2.90
379 380 4.143030 CGATTTCGCTCACAAGTCTGATTT 60.143 41.667 0.00 0.00 0.00 2.17
380 381 4.732285 TTTCGCTCACAAGTCTGATTTC 57.268 40.909 0.00 0.00 0.00 2.17
381 382 2.328473 TCGCTCACAAGTCTGATTTCG 58.672 47.619 0.00 0.00 0.00 3.46
382 383 1.201855 CGCTCACAAGTCTGATTTCGC 60.202 52.381 0.00 0.00 0.00 4.70
395 465 3.849911 TGATTTCGCTCACAAGTCTAGG 58.150 45.455 0.00 0.00 0.00 3.02
424 494 2.293170 TCGATGTGCAAACTTGGTTGA 58.707 42.857 2.20 0.00 0.00 3.18
431 501 2.224018 TGCAAACTTGGTTGAAGATGCC 60.224 45.455 2.20 0.00 42.41 4.40
454 524 2.971330 CTCATATCTTCCTCCACTGCCT 59.029 50.000 0.00 0.00 0.00 4.75
469 539 1.133790 CTGCCTGCCTCATAAGTTTGC 59.866 52.381 0.00 0.00 0.00 3.68
471 541 1.403323 GCCTGCCTCATAAGTTTGCTC 59.597 52.381 0.00 0.00 0.00 4.26
472 542 2.715046 CCTGCCTCATAAGTTTGCTCA 58.285 47.619 0.00 0.00 0.00 4.26
473 543 3.285484 CCTGCCTCATAAGTTTGCTCAT 58.715 45.455 0.00 0.00 0.00 2.90
474 544 4.454678 CCTGCCTCATAAGTTTGCTCATA 58.545 43.478 0.00 0.00 0.00 2.15
475 545 5.068636 CCTGCCTCATAAGTTTGCTCATAT 58.931 41.667 0.00 0.00 0.00 1.78
476 546 5.533903 CCTGCCTCATAAGTTTGCTCATATT 59.466 40.000 0.00 0.00 0.00 1.28
478 548 7.408756 TGCCTCATAAGTTTGCTCATATTTT 57.591 32.000 0.00 0.00 0.00 1.82
479 549 8.518430 TGCCTCATAAGTTTGCTCATATTTTA 57.482 30.769 0.00 0.00 0.00 1.52
480 550 8.965819 TGCCTCATAAGTTTGCTCATATTTTAA 58.034 29.630 0.00 0.00 0.00 1.52
481 551 9.971922 GCCTCATAAGTTTGCTCATATTTTAAT 57.028 29.630 0.00 0.00 0.00 1.40
508 578 9.995003 TTGTAGATCATGGCAATTTTAGTTTTT 57.005 25.926 0.00 0.00 0.00 1.94
530 600 8.408043 TTTTTGATGATGACAATTCCAGTACT 57.592 30.769 0.00 0.00 0.00 2.73
532 602 8.408043 TTTGATGATGACAATTCCAGTACTTT 57.592 30.769 0.00 0.00 0.00 2.66
533 603 7.381766 TGATGATGACAATTCCAGTACTTTG 57.618 36.000 0.00 0.00 0.00 2.77
535 605 6.801539 TGATGACAATTCCAGTACTTTGAC 57.198 37.500 11.14 6.35 0.00 3.18
536 606 5.705441 TGATGACAATTCCAGTACTTTGACC 59.295 40.000 11.14 4.43 0.00 4.02
537 607 5.042463 TGACAATTCCAGTACTTTGACCA 57.958 39.130 11.14 6.46 0.00 4.02
538 608 5.630121 TGACAATTCCAGTACTTTGACCAT 58.370 37.500 11.14 0.00 0.00 3.55
539 609 5.473162 TGACAATTCCAGTACTTTGACCATG 59.527 40.000 11.14 4.90 0.00 3.66
540 610 5.630121 ACAATTCCAGTACTTTGACCATGA 58.370 37.500 11.14 0.00 0.00 3.07
541 611 6.068010 ACAATTCCAGTACTTTGACCATGAA 58.932 36.000 11.14 0.00 0.00 2.57
542 612 6.549364 ACAATTCCAGTACTTTGACCATGAAA 59.451 34.615 11.14 0.00 0.00 2.69
543 613 7.069331 ACAATTCCAGTACTTTGACCATGAAAA 59.931 33.333 11.14 0.00 0.00 2.29
544 614 7.781324 ATTCCAGTACTTTGACCATGAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
545 615 8.877864 ATTCCAGTACTTTGACCATGAAAATA 57.122 30.769 0.00 0.00 0.00 1.40
546 616 8.877864 TTCCAGTACTTTGACCATGAAAATAT 57.122 30.769 0.00 0.00 0.00 1.28
547 617 8.877864 TCCAGTACTTTGACCATGAAAATATT 57.122 30.769 0.00 0.00 0.00 1.28
548 618 9.308000 TCCAGTACTTTGACCATGAAAATATTT 57.692 29.630 0.00 0.00 0.00 1.40
549 619 9.927668 CCAGTACTTTGACCATGAAAATATTTT 57.072 29.630 13.24 13.24 0.00 1.82
572 642 7.814264 TTTTTGTATGAACCATGGCAATTTT 57.186 28.000 13.04 0.00 0.00 1.82
573 643 8.908786 TTTTTGTATGAACCATGGCAATTTTA 57.091 26.923 13.04 0.00 0.00 1.52
574 644 8.908786 TTTTGTATGAACCATGGCAATTTTAA 57.091 26.923 13.04 0.00 0.00 1.52
575 645 8.545229 TTTGTATGAACCATGGCAATTTTAAG 57.455 30.769 13.04 0.00 0.00 1.85
576 646 7.238486 TGTATGAACCATGGCAATTTTAAGT 57.762 32.000 13.04 0.00 0.00 2.24
577 647 7.095910 TGTATGAACCATGGCAATTTTAAGTG 58.904 34.615 13.04 0.00 0.00 3.16
590 660 7.169035 CAATTTTAAGTGCATGTATCATGGC 57.831 36.000 10.96 5.04 0.00 4.40
591 661 5.911378 TTTTAAGTGCATGTATCATGGCA 57.089 34.783 10.96 0.00 0.00 4.92
592 662 5.911378 TTTAAGTGCATGTATCATGGCAA 57.089 34.783 10.96 0.00 38.10 4.52
593 663 6.468333 TTTAAGTGCATGTATCATGGCAAT 57.532 33.333 10.96 6.58 38.10 3.56
594 664 6.468333 TTAAGTGCATGTATCATGGCAATT 57.532 33.333 16.52 16.52 45.12 2.32
595 665 5.347620 AAGTGCATGTATCATGGCAATTT 57.652 34.783 10.96 5.95 41.10 1.82
596 666 5.347620 AGTGCATGTATCATGGCAATTTT 57.652 34.783 10.96 0.00 38.10 1.82
597 667 6.468333 AGTGCATGTATCATGGCAATTTTA 57.532 33.333 10.96 0.00 38.10 1.52
598 668 6.509656 AGTGCATGTATCATGGCAATTTTAG 58.490 36.000 10.96 0.00 38.10 1.85
599 669 6.097270 AGTGCATGTATCATGGCAATTTTAGT 59.903 34.615 10.96 0.00 38.10 2.24
600 670 6.757947 GTGCATGTATCATGGCAATTTTAGTT 59.242 34.615 10.96 0.00 38.10 2.24
601 671 7.278424 GTGCATGTATCATGGCAATTTTAGTTT 59.722 33.333 10.96 0.00 38.10 2.66
602 672 8.473219 TGCATGTATCATGGCAATTTTAGTTTA 58.527 29.630 10.96 0.00 32.54 2.01
603 673 9.480053 GCATGTATCATGGCAATTTTAGTTTAT 57.520 29.630 10.96 0.00 0.00 1.40
612 682 8.659925 TGGCAATTTTAGTTTATAATGCATGG 57.340 30.769 0.00 0.00 0.00 3.66
613 683 7.226325 TGGCAATTTTAGTTTATAATGCATGGC 59.774 33.333 0.00 0.00 0.00 4.40
614 684 7.226325 GGCAATTTTAGTTTATAATGCATGGCA 59.774 33.333 0.00 0.00 44.86 4.92
615 685 8.610896 GCAATTTTAGTTTATAATGCATGGCAA 58.389 29.630 0.00 0.00 43.62 4.52
617 687 9.889128 AATTTTAGTTTATAATGCATGGCAAGT 57.111 25.926 0.00 0.00 43.62 3.16
618 688 8.925161 TTTTAGTTTATAATGCATGGCAAGTC 57.075 30.769 0.00 0.00 43.62 3.01
619 689 7.880160 TTAGTTTATAATGCATGGCAAGTCT 57.120 32.000 0.00 0.00 43.62 3.24
620 690 8.972458 TTAGTTTATAATGCATGGCAAGTCTA 57.028 30.769 0.00 0.00 43.62 2.59
621 691 7.502120 AGTTTATAATGCATGGCAAGTCTAG 57.498 36.000 0.00 0.00 43.62 2.43
622 692 7.056635 AGTTTATAATGCATGGCAAGTCTAGT 58.943 34.615 0.00 0.00 43.62 2.57
623 693 7.557719 AGTTTATAATGCATGGCAAGTCTAGTT 59.442 33.333 0.00 0.00 43.62 2.24
624 694 7.880160 TTATAATGCATGGCAAGTCTAGTTT 57.120 32.000 0.00 0.00 43.62 2.66
625 695 4.708726 AATGCATGGCAAGTCTAGTTTC 57.291 40.909 0.00 0.00 43.62 2.78
626 696 3.423539 TGCATGGCAAGTCTAGTTTCT 57.576 42.857 0.00 0.00 34.76 2.52
627 697 3.754965 TGCATGGCAAGTCTAGTTTCTT 58.245 40.909 0.00 0.00 34.76 2.52
628 698 4.905429 TGCATGGCAAGTCTAGTTTCTTA 58.095 39.130 0.00 0.00 34.76 2.10
631 701 6.434028 TGCATGGCAAGTCTAGTTTCTTAATT 59.566 34.615 0.00 0.00 34.76 1.40
632 702 6.969473 GCATGGCAAGTCTAGTTTCTTAATTC 59.031 38.462 0.00 0.00 0.00 2.17
634 704 6.779860 TGGCAAGTCTAGTTTCTTAATTCCT 58.220 36.000 0.00 0.00 0.00 3.36
636 706 6.879458 GGCAAGTCTAGTTTCTTAATTCCTCA 59.121 38.462 0.00 0.00 0.00 3.86
680 750 9.979578 TTTTAAATGCAGAAGAAAATAGCTGAA 57.020 25.926 0.00 0.00 0.00 3.02
681 751 9.979578 TTTAAATGCAGAAGAAAATAGCTGAAA 57.020 25.926 0.00 0.00 0.00 2.69
682 752 7.880059 AAATGCAGAAGAAAATAGCTGAAAC 57.120 32.000 0.00 0.00 0.00 2.78
683 753 6.579666 ATGCAGAAGAAAATAGCTGAAACA 57.420 33.333 0.00 0.00 0.00 2.83
684 754 6.579666 TGCAGAAGAAAATAGCTGAAACAT 57.420 33.333 0.00 0.00 0.00 2.71
685 755 7.686438 TGCAGAAGAAAATAGCTGAAACATA 57.314 32.000 0.00 0.00 0.00 2.29
686 756 8.284945 TGCAGAAGAAAATAGCTGAAACATAT 57.715 30.769 0.00 0.00 0.00 1.78
691 761 9.674824 GAAGAAAATAGCTGAAACATATCATGG 57.325 33.333 0.00 0.00 33.60 3.66
692 762 7.655490 AGAAAATAGCTGAAACATATCATGGC 58.345 34.615 0.00 0.00 33.60 4.40
693 763 6.964807 AAATAGCTGAAACATATCATGGCA 57.035 33.333 0.00 0.00 33.60 4.92
694 764 6.964807 AATAGCTGAAACATATCATGGCAA 57.035 33.333 0.00 0.00 33.60 4.52
696 766 4.275810 AGCTGAAACATATCATGGCAACT 58.724 39.130 0.00 0.00 37.61 3.16
698 768 5.186409 AGCTGAAACATATCATGGCAACTTT 59.814 36.000 0.00 0.00 37.61 2.66
699 769 6.377996 AGCTGAAACATATCATGGCAACTTTA 59.622 34.615 0.00 0.00 37.61 1.85
700 770 6.694411 GCTGAAACATATCATGGCAACTTTAG 59.306 38.462 0.00 0.00 37.61 1.85
701 771 7.629222 GCTGAAACATATCATGGCAACTTTAGT 60.629 37.037 0.00 0.00 37.61 2.24
702 772 7.537715 TGAAACATATCATGGCAACTTTAGTG 58.462 34.615 0.00 0.00 37.61 2.74
704 774 8.574251 AAACATATCATGGCAACTTTAGTGTA 57.426 30.769 0.00 0.00 37.61 2.90
705 775 8.574251 AACATATCATGGCAACTTTAGTGTAA 57.426 30.769 0.00 0.00 37.61 2.41
707 777 8.458843 ACATATCATGGCAACTTTAGTGTAAAC 58.541 33.333 0.00 0.00 37.61 2.01
708 778 6.892658 ATCATGGCAACTTTAGTGTAAACA 57.107 33.333 0.00 0.00 37.61 2.83
709 779 6.892658 TCATGGCAACTTTAGTGTAAACAT 57.107 33.333 0.00 0.00 37.61 2.71
712 782 6.892658 TGGCAACTTTAGTGTAAACATCAT 57.107 33.333 0.00 0.00 37.61 2.45
713 783 7.283625 TGGCAACTTTAGTGTAAACATCATT 57.716 32.000 0.00 0.00 37.61 2.57
714 784 7.144661 TGGCAACTTTAGTGTAAACATCATTG 58.855 34.615 0.00 0.00 37.61 2.82
717 787 7.168972 GCAACTTTAGTGTAAACATCATTGCAA 59.831 33.333 0.00 0.00 0.00 4.08
718 788 9.195411 CAACTTTAGTGTAAACATCATTGCAAT 57.805 29.630 5.99 5.99 0.00 3.56
720 790 9.410556 ACTTTAGTGTAAACATCATTGCAATTC 57.589 29.630 9.83 0.00 0.00 2.17
723 793 7.821595 AGTGTAAACATCATTGCAATTCATG 57.178 32.000 19.94 19.94 0.00 3.07
724 794 7.380536 AGTGTAAACATCATTGCAATTCATGT 58.619 30.769 20.93 20.93 0.00 3.21
725 795 7.329962 AGTGTAAACATCATTGCAATTCATGTG 59.670 33.333 24.76 15.35 0.00 3.21
747 817 9.926158 ATGTGCAATAGACATGACAATTTTTAA 57.074 25.926 0.00 0.00 32.68 1.52
748 818 9.190858 TGTGCAATAGACATGACAATTTTTAAC 57.809 29.630 0.00 0.00 0.00 2.01
749 819 8.647226 GTGCAATAGACATGACAATTTTTAACC 58.353 33.333 0.00 0.00 0.00 2.85
750 820 8.363390 TGCAATAGACATGACAATTTTTAACCA 58.637 29.630 0.00 0.00 0.00 3.67
751 821 9.202273 GCAATAGACATGACAATTTTTAACCAA 57.798 29.630 0.00 0.00 0.00 3.67
804 874 8.467402 TGAGATTTAGTTTTGAAGATCTCGTC 57.533 34.615 0.00 0.00 41.32 4.20
806 876 5.511088 TTTAGTTTTGAAGATCTCGTCGC 57.489 39.130 0.00 0.00 0.00 5.19
808 878 1.983605 GTTTTGAAGATCTCGTCGCGA 59.016 47.619 3.71 3.71 0.00 5.87
819 889 1.847818 TCGTCGCGAGGGATTTAATG 58.152 50.000 26.64 0.13 0.00 1.90
820 890 1.406180 TCGTCGCGAGGGATTTAATGA 59.594 47.619 26.64 2.73 0.00 2.57
821 891 2.035449 TCGTCGCGAGGGATTTAATGAT 59.965 45.455 26.64 0.00 0.00 2.45
822 892 2.155732 CGTCGCGAGGGATTTAATGATG 59.844 50.000 20.58 0.00 0.00 3.07
823 893 3.390135 GTCGCGAGGGATTTAATGATGA 58.610 45.455 10.24 0.00 0.00 2.92
824 894 3.807622 GTCGCGAGGGATTTAATGATGAA 59.192 43.478 10.24 0.00 0.00 2.57
826 896 4.511454 TCGCGAGGGATTTAATGATGAAAG 59.489 41.667 3.71 0.00 0.00 2.62
827 897 4.540824 GCGAGGGATTTAATGATGAAAGC 58.459 43.478 0.00 0.00 0.00 3.51
828 898 4.776743 CGAGGGATTTAATGATGAAAGCG 58.223 43.478 0.00 0.00 0.00 4.68
829 899 4.540824 GAGGGATTTAATGATGAAAGCGC 58.459 43.478 0.00 0.00 35.92 5.92
830 900 3.953612 AGGGATTTAATGATGAAAGCGCA 59.046 39.130 11.47 0.00 37.53 6.09
832 902 4.919754 GGGATTTAATGATGAAAGCGCATC 59.080 41.667 11.47 8.39 43.84 3.91
833 903 5.278660 GGGATTTAATGATGAAAGCGCATCT 60.279 40.000 11.47 0.00 43.89 2.90
834 904 6.211515 GGATTTAATGATGAAAGCGCATCTT 58.788 36.000 11.47 5.69 43.89 2.40
835 905 6.361748 GGATTTAATGATGAAAGCGCATCTTC 59.638 38.462 11.47 15.17 43.89 2.87
836 906 5.816449 TTAATGATGAAAGCGCATCTTCA 57.184 34.783 24.02 24.02 43.89 3.02
837 907 4.707030 AATGATGAAAGCGCATCTTCAA 57.293 36.364 24.94 12.25 43.89 2.69
838 908 4.913335 ATGATGAAAGCGCATCTTCAAT 57.087 36.364 24.94 13.53 43.89 2.57
839 909 4.282950 TGATGAAAGCGCATCTTCAATC 57.717 40.909 21.43 17.70 43.89 2.67
840 910 2.811902 TGAAAGCGCATCTTCAATCG 57.188 45.000 11.47 0.00 32.88 3.34
841 911 1.398041 TGAAAGCGCATCTTCAATCGG 59.602 47.619 11.47 0.00 32.88 4.18
842 912 1.665679 GAAAGCGCATCTTCAATCGGA 59.334 47.619 11.47 0.00 32.88 4.55
846 916 2.684881 AGCGCATCTTCAATCGGATTTT 59.315 40.909 11.47 0.00 0.00 1.82
847 917 3.129287 AGCGCATCTTCAATCGGATTTTT 59.871 39.130 11.47 0.00 0.00 1.94
848 918 3.483558 GCGCATCTTCAATCGGATTTTTC 59.516 43.478 0.30 0.00 0.00 2.29
849 919 4.037690 CGCATCTTCAATCGGATTTTTCC 58.962 43.478 0.00 0.00 0.00 3.13
850 920 4.438608 CGCATCTTCAATCGGATTTTTCCA 60.439 41.667 0.00 0.00 0.00 3.53
851 921 5.594926 GCATCTTCAATCGGATTTTTCCAT 58.405 37.500 0.00 0.00 0.00 3.41
852 922 6.044682 GCATCTTCAATCGGATTTTTCCATT 58.955 36.000 0.00 0.00 0.00 3.16
853 923 6.536224 GCATCTTCAATCGGATTTTTCCATTT 59.464 34.615 0.00 0.00 0.00 2.32
854 924 7.706179 GCATCTTCAATCGGATTTTTCCATTTA 59.294 33.333 0.00 0.00 0.00 1.40
855 925 9.585099 CATCTTCAATCGGATTTTTCCATTTAA 57.415 29.630 0.00 0.00 0.00 1.52
856 926 9.807649 ATCTTCAATCGGATTTTTCCATTTAAG 57.192 29.630 0.00 0.00 0.00 1.85
857 927 9.019656 TCTTCAATCGGATTTTTCCATTTAAGA 57.980 29.630 0.00 0.00 0.00 2.10
858 928 9.294030 CTTCAATCGGATTTTTCCATTTAAGAG 57.706 33.333 0.00 0.00 0.00 2.85
859 929 8.574251 TCAATCGGATTTTTCCATTTAAGAGA 57.426 30.769 0.00 0.00 0.00 3.10
860 930 9.189156 TCAATCGGATTTTTCCATTTAAGAGAT 57.811 29.630 0.00 0.00 0.00 2.75
914 984 4.329638 AAAACCCCACATGATATGGTGA 57.670 40.909 0.00 0.00 37.18 4.02
915 985 3.297134 AACCCCACATGATATGGTGAC 57.703 47.619 0.00 0.00 37.18 3.67
927 997 2.666085 TGGTGACATGGCGTAGTCT 58.334 52.632 0.00 0.00 35.81 3.24
928 998 0.246360 TGGTGACATGGCGTAGTCTG 59.754 55.000 0.00 0.00 35.81 3.51
929 999 0.246635 GGTGACATGGCGTAGTCTGT 59.753 55.000 0.00 0.00 35.81 3.41
930 1000 1.350193 GTGACATGGCGTAGTCTGTG 58.650 55.000 0.00 0.00 35.81 3.66
931 1001 0.966179 TGACATGGCGTAGTCTGTGT 59.034 50.000 0.00 0.00 34.78 3.72
932 1002 1.067846 TGACATGGCGTAGTCTGTGTC 60.068 52.381 0.00 0.00 44.28 3.67
933 1003 0.966179 ACATGGCGTAGTCTGTGTCA 59.034 50.000 0.00 0.00 26.64 3.58
934 1004 1.550524 ACATGGCGTAGTCTGTGTCAT 59.449 47.619 0.00 0.00 26.64 3.06
935 1005 1.929169 CATGGCGTAGTCTGTGTCATG 59.071 52.381 6.41 6.41 0.00 3.07
936 1006 1.253100 TGGCGTAGTCTGTGTCATGA 58.747 50.000 0.00 0.00 0.00 3.07
937 1007 1.202348 TGGCGTAGTCTGTGTCATGAG 59.798 52.381 0.00 0.00 0.00 2.90
938 1008 1.272781 GCGTAGTCTGTGTCATGAGC 58.727 55.000 0.00 0.00 0.00 4.26
939 1009 1.539341 CGTAGTCTGTGTCATGAGCG 58.461 55.000 0.00 0.00 0.00 5.03
940 1010 1.135660 CGTAGTCTGTGTCATGAGCGT 60.136 52.381 0.00 0.00 0.00 5.07
987 1057 4.745649 ACGATTTCCTTCCTAGTTCGAAG 58.254 43.478 0.00 1.41 37.14 3.79
1140 1210 1.399791 CTGAAATCCTTCAAGCTCCGC 59.600 52.381 0.00 0.00 41.05 5.54
1368 1444 2.523168 TCGCACCTCCTCACCACA 60.523 61.111 0.00 0.00 0.00 4.17
1380 1456 2.125269 ACCACATACGCCGCCTTC 60.125 61.111 0.00 0.00 0.00 3.46
1548 1624 1.795177 GAGCGTCGTGTCGTACACC 60.795 63.158 11.01 0.61 45.93 4.16
1691 1767 0.524862 CTCCACCACAATGCTCTTGC 59.475 55.000 0.26 0.00 40.20 4.01
1708 1784 3.187637 TCTTGCCGTCTTTCGTAAAATGG 59.812 43.478 0.00 0.00 37.94 3.16
1830 1906 7.220875 GGATTGGCGATTAAATCAAACTTCTTC 59.779 37.037 0.00 0.00 35.00 2.87
1870 1946 3.983344 ACAAAATTCTTTGATCACGCTGC 59.017 39.130 0.00 0.00 44.03 5.25
1875 1951 2.004733 TCTTTGATCACGCTGCATCTG 58.995 47.619 0.00 0.00 0.00 2.90
1884 1960 1.164662 CGCTGCATCTGAGAATGGGG 61.165 60.000 0.00 0.00 0.00 4.96
1892 1968 0.841961 CTGAGAATGGGGGATGCAGA 59.158 55.000 0.00 0.00 0.00 4.26
1986 2062 1.819288 TCTGAGTCGGGTGATCTTGAC 59.181 52.381 0.00 0.00 0.00 3.18
2070 2146 0.680618 CTAGGCATGAGCAGAGAGGG 59.319 60.000 0.00 0.00 44.61 4.30
2160 2236 1.916506 TCTCTAGTGTGCTCAGTGCT 58.083 50.000 6.37 0.00 43.37 4.40
2172 2248 2.605030 CTCAGTGCTTGTGCTAGTCTC 58.395 52.381 0.00 0.00 40.48 3.36
2241 2317 2.162681 GGCTCTAGCACCAATGTGTTT 58.837 47.619 4.07 0.00 44.65 2.83
2607 2683 2.877168 CAAGATGGCTCATGCTAAGACC 59.123 50.000 0.00 0.00 39.59 3.85
2640 2716 7.410120 AGGAATCGAGGAAAGCATTTTTATT 57.590 32.000 0.00 0.00 39.27 1.40
2643 2719 5.975693 TCGAGGAAAGCATTTTTATTGGT 57.024 34.783 0.00 0.00 39.27 3.67
2673 2749 2.621338 AGTGACATGTATGCCAAGTCG 58.379 47.619 0.00 0.00 43.16 4.18
2788 2864 5.105567 TGGTTTTGCGGAGGAATCTATTA 57.894 39.130 0.00 0.00 37.93 0.98
2822 2898 4.828939 GGATATGATGGCAACTGGAATGAA 59.171 41.667 0.00 0.00 37.61 2.57
2823 2899 5.048224 GGATATGATGGCAACTGGAATGAAG 60.048 44.000 0.00 0.00 37.61 3.02
2886 2962 2.260869 CGGTGGTTTGGTGGAGCAG 61.261 63.158 0.00 0.00 0.00 4.24
2892 2968 1.607178 TTTGGTGGAGCAGGCCATG 60.607 57.895 5.01 0.97 40.68 3.66
3066 3142 1.310933 CCCTTCTGAGCGCTTGCAAT 61.311 55.000 13.26 0.00 42.66 3.56
3141 3217 4.298626 TGGAGAAGGATAATACAGCAGGT 58.701 43.478 0.00 0.00 0.00 4.00
3390 3467 5.010314 TGTTTCGTCAGTAGATTACCAGTGT 59.990 40.000 0.00 0.00 0.00 3.55
3396 3473 4.462834 TCAGTAGATTACCAGTGTGGACAG 59.537 45.833 0.00 0.00 40.96 3.51
3398 3475 1.279271 AGATTACCAGTGTGGACAGCC 59.721 52.381 0.00 0.00 40.96 4.85
3401 3478 2.018355 TACCAGTGTGGACAGCCTTA 57.982 50.000 0.00 0.00 40.96 2.69
3402 3479 0.687354 ACCAGTGTGGACAGCCTTAG 59.313 55.000 0.00 0.00 40.96 2.18
3403 3480 0.976641 CCAGTGTGGACAGCCTTAGA 59.023 55.000 0.00 0.00 40.96 2.10
3404 3481 1.338200 CCAGTGTGGACAGCCTTAGAC 60.338 57.143 0.00 0.00 40.96 2.59
3408 3485 3.118038 AGTGTGGACAGCCTTAGACAAAA 60.118 43.478 0.00 0.00 34.31 2.44
3409 3486 3.821033 GTGTGGACAGCCTTAGACAAAAT 59.179 43.478 0.00 0.00 34.31 1.82
3411 3488 5.122396 GTGTGGACAGCCTTAGACAAAATAG 59.878 44.000 0.00 0.00 34.31 1.73
3414 3502 6.258947 GTGGACAGCCTTAGACAAAATAGATC 59.741 42.308 0.00 0.00 34.31 2.75
3456 3545 5.923204 ACAGATAAAGGTAGCAAGATGGAG 58.077 41.667 0.00 0.00 0.00 3.86
3464 3553 2.998316 AGCAAGATGGAGCTACTTCC 57.002 50.000 8.19 0.00 39.78 3.46
3484 3573 3.969976 TCCGGAGAATGATCTTGAGGAAT 59.030 43.478 0.00 0.00 35.54 3.01
3493 3582 8.738106 AGAATGATCTTGAGGAATTTGAGTTTC 58.262 33.333 0.00 0.00 29.15 2.78
3494 3583 6.486253 TGATCTTGAGGAATTTGAGTTTCG 57.514 37.500 0.00 0.00 0.00 3.46
3500 3589 2.040412 AGGAATTTGAGTTTCGCTCCCT 59.960 45.455 0.00 0.00 43.48 4.20
3503 3592 4.457949 GGAATTTGAGTTTCGCTCCCTTTA 59.542 41.667 0.00 0.00 43.48 1.85
3509 3598 3.081804 AGTTTCGCTCCCTTTATGTTGG 58.918 45.455 0.00 0.00 0.00 3.77
3515 3604 3.421844 GCTCCCTTTATGTTGGTTGTCT 58.578 45.455 0.00 0.00 0.00 3.41
3516 3605 3.826729 GCTCCCTTTATGTTGGTTGTCTT 59.173 43.478 0.00 0.00 0.00 3.01
3524 3613 7.040755 CCTTTATGTTGGTTGTCTTGATGTACA 60.041 37.037 0.00 0.00 0.00 2.90
3525 3614 7.994425 TTATGTTGGTTGTCTTGATGTACAT 57.006 32.000 8.43 8.43 0.00 2.29
3526 3615 5.940192 TGTTGGTTGTCTTGATGTACATC 57.060 39.130 25.95 25.95 38.29 3.06
3527 3616 5.620206 TGTTGGTTGTCTTGATGTACATCT 58.380 37.500 30.67 2.79 38.60 2.90
3528 3617 5.469760 TGTTGGTTGTCTTGATGTACATCTG 59.530 40.000 30.67 23.52 38.60 2.90
3529 3618 4.002982 TGGTTGTCTTGATGTACATCTGC 58.997 43.478 30.67 19.49 38.60 4.26
3530 3619 4.256920 GGTTGTCTTGATGTACATCTGCT 58.743 43.478 30.67 1.18 38.60 4.24
3541 3659 4.582869 TGTACATCTGCTCTGCAAATTCT 58.417 39.130 0.00 0.00 38.41 2.40
3556 3674 4.570772 GCAAATTCTATAGCAGGTTCGTGA 59.429 41.667 0.00 0.00 0.00 4.35
3557 3675 5.237344 GCAAATTCTATAGCAGGTTCGTGAT 59.763 40.000 0.00 0.00 0.00 3.06
3561 3679 2.401583 ATAGCAGGTTCGTGATTGCA 57.598 45.000 7.28 0.00 38.97 4.08
3562 3680 1.438651 TAGCAGGTTCGTGATTGCAC 58.561 50.000 0.00 0.00 41.67 4.57
3567 3685 1.070758 AGGTTCGTGATTGCACTCACT 59.929 47.619 28.05 11.69 42.73 3.41
3568 3686 1.195448 GGTTCGTGATTGCACTCACTG 59.805 52.381 28.05 22.08 42.73 3.66
3630 3783 6.907212 CCAACGATTTTGAGCAGTATTATCAC 59.093 38.462 0.00 0.00 0.00 3.06
3635 3788 5.756195 TTTGAGCAGTATTATCACCATGC 57.244 39.130 0.00 0.00 0.00 4.06
3658 3811 1.601171 CTTCACCCTGCTCCTGGAG 59.399 63.158 19.55 19.55 0.00 3.86
3678 3838 2.033801 AGCATTATCGCTTTGCATGGTC 59.966 45.455 0.00 0.00 39.99 4.02
3696 3856 4.422057 TGGTCTTGATAACCTGGAGTGTA 58.578 43.478 0.00 0.00 37.69 2.90
3703 3863 6.681729 TGATAACCTGGAGTGTAGACTTTT 57.318 37.500 0.00 0.00 30.16 2.27
3711 3871 4.587262 TGGAGTGTAGACTTTTCTGCTGTA 59.413 41.667 0.00 0.00 35.57 2.74
3712 3872 4.924462 GGAGTGTAGACTTTTCTGCTGTAC 59.076 45.833 0.00 0.00 35.57 2.90
3719 3879 8.531982 TGTAGACTTTTCTGCTGTACTTCATAT 58.468 33.333 0.00 0.00 35.57 1.78
3720 3880 7.840342 AGACTTTTCTGCTGTACTTCATATG 57.160 36.000 0.00 0.00 0.00 1.78
3721 3881 7.615403 AGACTTTTCTGCTGTACTTCATATGA 58.385 34.615 0.00 0.00 0.00 2.15
3722 3882 8.263640 AGACTTTTCTGCTGTACTTCATATGAT 58.736 33.333 6.17 0.00 0.00 2.45
3723 3883 8.798859 ACTTTTCTGCTGTACTTCATATGATT 57.201 30.769 6.17 0.00 0.00 2.57
3742 3902 4.454161 TGATTTGATTTGACGTGAATCGGT 59.546 37.500 13.52 5.29 44.69 4.69
3782 3942 0.108615 AACGGGACTCAGCATTCTCG 60.109 55.000 0.00 0.00 41.70 4.04
3790 3950 1.132453 CTCAGCATTCTCGGTGTCGTA 59.868 52.381 0.00 0.00 35.85 3.43
3796 3956 1.717194 TTCTCGGTGTCGTATTTGCC 58.283 50.000 0.00 0.00 37.69 4.52
3825 3985 2.089980 CATCTTTTCTGGGCTCCACTG 58.910 52.381 0.00 0.00 0.00 3.66
3829 3989 1.289160 TTTCTGGGCTCCACTGCTAT 58.711 50.000 0.00 0.00 0.00 2.97
3849 4009 5.393352 GCTATGCATTGATTTGTCTGACCAA 60.393 40.000 12.54 0.52 0.00 3.67
3854 4014 5.567224 GCATTGATTTGTCTGACCAATTGGA 60.567 40.000 31.22 8.67 38.94 3.53
3856 4016 5.452078 TGATTTGTCTGACCAATTGGAAC 57.548 39.130 31.22 22.06 38.94 3.62
3865 4025 1.684450 ACCAATTGGAACGGTTTGGAC 59.316 47.619 31.22 0.00 40.89 4.02
3866 4026 1.960689 CCAATTGGAACGGTTTGGACT 59.039 47.619 20.50 0.00 40.89 3.85
3867 4027 2.364002 CCAATTGGAACGGTTTGGACTT 59.636 45.455 20.50 0.00 40.89 3.01
3868 4028 3.181470 CCAATTGGAACGGTTTGGACTTT 60.181 43.478 20.50 0.00 40.89 2.66
3869 4029 3.726291 ATTGGAACGGTTTGGACTTTG 57.274 42.857 0.00 0.00 0.00 2.77
3870 4030 1.394618 TGGAACGGTTTGGACTTTGG 58.605 50.000 0.00 0.00 0.00 3.28
3871 4031 1.064611 TGGAACGGTTTGGACTTTGGA 60.065 47.619 0.00 0.00 0.00 3.53
3886 4046 7.514721 TGGACTTTGGAGGATGTAAATATACC 58.485 38.462 0.00 0.00 0.00 2.73
3894 4054 7.162082 GGAGGATGTAAATATACCACAGAAGG 58.838 42.308 0.00 0.00 0.00 3.46
3895 4055 6.534634 AGGATGTAAATATACCACAGAAGGC 58.465 40.000 0.00 0.00 0.00 4.35
3897 4057 5.347620 TGTAAATATACCACAGAAGGCGT 57.652 39.130 0.00 0.00 0.00 5.68
3917 4077 1.303561 TCATGTGACAAGCCTGCCC 60.304 57.895 0.00 0.00 0.00 5.36
3918 4078 1.604308 CATGTGACAAGCCTGCCCA 60.604 57.895 0.00 0.00 0.00 5.36
3919 4079 1.153524 ATGTGACAAGCCTGCCCAA 59.846 52.632 0.00 0.00 0.00 4.12
3920 4080 0.896940 ATGTGACAAGCCTGCCCAAG 60.897 55.000 0.00 0.00 0.00 3.61
3921 4081 2.598394 TGACAAGCCTGCCCAAGC 60.598 61.111 0.00 0.00 40.48 4.01
3933 4093 3.475566 TGCCCAAGCATAGAGTATGAC 57.524 47.619 0.00 0.00 46.52 3.06
3934 4094 2.224042 TGCCCAAGCATAGAGTATGACG 60.224 50.000 0.00 0.00 46.52 4.35
3935 4095 2.035961 GCCCAAGCATAGAGTATGACGA 59.964 50.000 0.00 0.00 38.45 4.20
3936 4096 3.858877 GCCCAAGCATAGAGTATGACGAG 60.859 52.174 0.00 0.00 38.45 4.18
3947 4107 4.459685 AGAGTATGACGAGCTAGTGTGTTT 59.540 41.667 3.45 0.00 0.00 2.83
3951 4111 3.120792 TGACGAGCTAGTGTGTTTGAAC 58.879 45.455 3.45 0.00 0.00 3.18
3952 4112 2.475487 GACGAGCTAGTGTGTTTGAACC 59.525 50.000 3.45 0.00 0.00 3.62
4021 4188 2.560105 GGAGGAAAAGCTGCATCAAGTT 59.440 45.455 1.02 0.00 0.00 2.66
4030 4197 4.333690 AGCTGCATCAAGTTGAGAAAGAT 58.666 39.130 11.91 4.29 0.00 2.40
4057 4254 5.220989 CCAGGTGTGATCATAATGCTTCTTG 60.221 44.000 0.00 0.00 0.00 3.02
4064 4261 7.123098 TGTGATCATAATGCTTCTTGTCCATTT 59.877 33.333 0.00 0.00 32.07 2.32
4065 4262 7.434307 GTGATCATAATGCTTCTTGTCCATTTG 59.566 37.037 0.00 0.00 32.07 2.32
4087 4284 5.428253 TGGTAATCTGCTCATTAACTGACC 58.572 41.667 5.27 0.00 28.65 4.02
4105 4302 4.780815 TGACCTATCCACATTTGGCTTAG 58.219 43.478 0.00 0.00 43.56 2.18
4112 4309 3.119531 TCCACATTTGGCTTAGCGAATTG 60.120 43.478 17.67 17.67 43.56 2.32
4122 4319 3.876300 GCGAATTGCTCTCCGTGT 58.124 55.556 0.00 0.00 41.73 4.49
4141 4338 4.258860 CGTGTTTCGTTTTGACTTTTGAGC 60.259 41.667 0.00 0.00 34.52 4.26
4143 4340 4.092816 GTTTCGTTTTGACTTTTGAGCGA 58.907 39.130 0.00 0.00 0.00 4.93
4151 4348 4.316205 TGACTTTTGAGCGAGAACTGTA 57.684 40.909 0.00 0.00 0.00 2.74
4152 4349 4.299155 TGACTTTTGAGCGAGAACTGTAG 58.701 43.478 0.00 0.00 0.00 2.74
4165 4362 1.349067 ACTGTAGGGTTGGTGAGGTC 58.651 55.000 0.00 0.00 0.00 3.85
4167 4364 1.909302 CTGTAGGGTTGGTGAGGTCAT 59.091 52.381 0.00 0.00 0.00 3.06
4168 4365 3.104512 CTGTAGGGTTGGTGAGGTCATA 58.895 50.000 0.00 0.00 0.00 2.15
4169 4366 3.517901 CTGTAGGGTTGGTGAGGTCATAA 59.482 47.826 0.00 0.00 0.00 1.90
4171 4368 1.633945 AGGGTTGGTGAGGTCATAACC 59.366 52.381 15.53 15.53 46.87 2.85
4193 4390 5.783875 ACCCATACTACACTTCCAAACTACT 59.216 40.000 0.00 0.00 0.00 2.57
4194 4391 6.955851 ACCCATACTACACTTCCAAACTACTA 59.044 38.462 0.00 0.00 0.00 1.82
4195 4392 7.093596 ACCCATACTACACTTCCAAACTACTAC 60.094 40.741 0.00 0.00 0.00 2.73
4196 4393 7.123847 CCCATACTACACTTCCAAACTACTACT 59.876 40.741 0.00 0.00 0.00 2.57
4197 4394 9.182214 CCATACTACACTTCCAAACTACTACTA 57.818 37.037 0.00 0.00 0.00 1.82
4199 4396 9.972106 ATACTACACTTCCAAACTACTACTACT 57.028 33.333 0.00 0.00 0.00 2.57
4200 4397 8.334263 ACTACACTTCCAAACTACTACTACTC 57.666 38.462 0.00 0.00 0.00 2.59
4201 4398 6.587206 ACACTTCCAAACTACTACTACTCC 57.413 41.667 0.00 0.00 0.00 3.85
4202 4399 5.479724 ACACTTCCAAACTACTACTACTCCC 59.520 44.000 0.00 0.00 0.00 4.30
4203 4400 5.715753 CACTTCCAAACTACTACTACTCCCT 59.284 44.000 0.00 0.00 0.00 4.20
4204 4401 5.951148 ACTTCCAAACTACTACTACTCCCTC 59.049 44.000 0.00 0.00 0.00 4.30
4205 4402 4.864726 TCCAAACTACTACTACTCCCTCC 58.135 47.826 0.00 0.00 0.00 4.30
4206 4403 3.631227 CCAAACTACTACTACTCCCTCCG 59.369 52.174 0.00 0.00 0.00 4.63
4207 4404 4.268359 CAAACTACTACTACTCCCTCCGT 58.732 47.826 0.00 0.00 0.00 4.69
4208 4405 4.582973 AACTACTACTACTCCCTCCGTT 57.417 45.455 0.00 0.00 0.00 4.44
4209 4406 4.149511 ACTACTACTACTCCCTCCGTTC 57.850 50.000 0.00 0.00 0.00 3.95
4210 4407 2.433662 ACTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
4211 4408 1.637553 ACTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
4212 4409 2.042162 ACTACTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
4213 4410 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4214 4411 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
4215 4412 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
4216 4413 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
4217 4414 4.720273 ACTACTCCCTCCGTTCCAAATTAT 59.280 41.667 0.00 0.00 0.00 1.28
4218 4415 4.586306 ACTCCCTCCGTTCCAAATTATT 57.414 40.909 0.00 0.00 0.00 1.40
4219 4416 4.524053 ACTCCCTCCGTTCCAAATTATTC 58.476 43.478 0.00 0.00 0.00 1.75
4220 4417 3.537580 TCCCTCCGTTCCAAATTATTCG 58.462 45.455 0.00 0.00 0.00 3.34
4221 4418 3.054948 TCCCTCCGTTCCAAATTATTCGT 60.055 43.478 0.00 0.00 0.00 3.85
4222 4419 3.311596 CCCTCCGTTCCAAATTATTCGTC 59.688 47.826 0.00 0.00 0.00 4.20
4223 4420 3.000925 CCTCCGTTCCAAATTATTCGTCG 59.999 47.826 0.00 0.00 0.00 5.12
4224 4421 2.349275 TCCGTTCCAAATTATTCGTCGC 59.651 45.455 0.00 0.00 0.00 5.19
4225 4422 2.094575 CCGTTCCAAATTATTCGTCGCA 59.905 45.455 0.00 0.00 0.00 5.10
4226 4423 3.342269 CGTTCCAAATTATTCGTCGCAG 58.658 45.455 0.00 0.00 0.00 5.18
4227 4424 3.061563 CGTTCCAAATTATTCGTCGCAGA 59.938 43.478 0.00 0.00 0.00 4.26
4228 4425 4.434989 CGTTCCAAATTATTCGTCGCAGAA 60.435 41.667 0.00 0.00 39.69 3.02
4229 4426 5.387279 GTTCCAAATTATTCGTCGCAGAAA 58.613 37.500 0.00 0.00 39.69 2.52
4230 4427 5.811399 TCCAAATTATTCGTCGCAGAAAT 57.189 34.783 0.00 0.00 39.69 2.17
4231 4428 5.568482 TCCAAATTATTCGTCGCAGAAATG 58.432 37.500 0.00 0.00 39.69 2.32
4232 4429 4.734854 CCAAATTATTCGTCGCAGAAATGG 59.265 41.667 0.00 0.00 39.69 3.16
4233 4430 5.448496 CCAAATTATTCGTCGCAGAAATGGA 60.448 40.000 2.73 0.00 39.69 3.41
4234 4431 6.201517 CAAATTATTCGTCGCAGAAATGGAT 58.798 36.000 0.00 0.00 39.69 3.41
4235 4432 7.351981 CAAATTATTCGTCGCAGAAATGGATA 58.648 34.615 0.00 0.00 39.69 2.59
4236 4433 7.672983 AATTATTCGTCGCAGAAATGGATAT 57.327 32.000 0.00 0.00 39.69 1.63
4237 4434 8.771920 AATTATTCGTCGCAGAAATGGATATA 57.228 30.769 0.00 0.00 39.69 0.86
4238 4435 8.948631 ATTATTCGTCGCAGAAATGGATATAT 57.051 30.769 0.00 0.00 39.69 0.86
4239 4436 6.893958 ATTCGTCGCAGAAATGGATATATC 57.106 37.500 3.96 3.96 39.69 1.63
4240 4437 5.644977 TCGTCGCAGAAATGGATATATCT 57.355 39.130 12.42 0.00 39.69 1.98
4241 4438 6.753107 TCGTCGCAGAAATGGATATATCTA 57.247 37.500 12.42 6.97 39.69 1.98
4242 4439 6.786207 TCGTCGCAGAAATGGATATATCTAG 58.214 40.000 12.42 0.00 39.69 2.43
4243 4440 6.598064 TCGTCGCAGAAATGGATATATCTAGA 59.402 38.462 12.42 0.00 39.69 2.43
4244 4441 7.120726 TCGTCGCAGAAATGGATATATCTAGAA 59.879 37.037 12.42 0.00 39.69 2.10
4245 4442 7.219154 CGTCGCAGAAATGGATATATCTAGAAC 59.781 40.741 12.42 2.68 39.69 3.01
4246 4443 8.247562 GTCGCAGAAATGGATATATCTAGAACT 58.752 37.037 12.42 4.71 39.69 3.01
4247 4444 9.462606 TCGCAGAAATGGATATATCTAGAACTA 57.537 33.333 12.42 0.00 0.00 2.24
4275 4472 9.997172 AATACATCTAGATACATCCATACCTGA 57.003 33.333 4.54 0.00 0.00 3.86
4276 4473 7.953005 ACATCTAGATACATCCATACCTGAG 57.047 40.000 4.54 0.00 0.00 3.35
4277 4474 7.703755 ACATCTAGATACATCCATACCTGAGA 58.296 38.462 4.54 0.00 0.00 3.27
4278 4475 7.613801 ACATCTAGATACATCCATACCTGAGAC 59.386 40.741 4.54 0.00 0.00 3.36
4279 4476 7.091533 TCTAGATACATCCATACCTGAGACA 57.908 40.000 0.00 0.00 0.00 3.41
4280 4477 7.526918 TCTAGATACATCCATACCTGAGACAA 58.473 38.462 0.00 0.00 0.00 3.18
4281 4478 6.662865 AGATACATCCATACCTGAGACAAG 57.337 41.667 0.00 0.00 0.00 3.16
4282 4479 6.139671 AGATACATCCATACCTGAGACAAGT 58.860 40.000 0.00 0.00 0.00 3.16
4283 4480 7.298374 AGATACATCCATACCTGAGACAAGTA 58.702 38.462 0.00 0.00 0.00 2.24
4284 4481 7.785028 AGATACATCCATACCTGAGACAAGTAA 59.215 37.037 0.00 0.00 0.00 2.24
4285 4482 6.814954 ACATCCATACCTGAGACAAGTAAT 57.185 37.500 0.00 0.00 0.00 1.89
4286 4483 7.200434 ACATCCATACCTGAGACAAGTAATT 57.800 36.000 0.00 0.00 0.00 1.40
4287 4484 7.275920 ACATCCATACCTGAGACAAGTAATTC 58.724 38.462 0.00 0.00 0.00 2.17
4288 4485 5.902681 TCCATACCTGAGACAAGTAATTCG 58.097 41.667 0.00 0.00 0.00 3.34
4289 4486 5.050490 CCATACCTGAGACAAGTAATTCGG 58.950 45.833 0.00 0.00 0.00 4.30
4290 4487 5.163447 CCATACCTGAGACAAGTAATTCGGA 60.163 44.000 0.00 0.00 0.00 4.55
4291 4488 4.884668 ACCTGAGACAAGTAATTCGGAA 57.115 40.909 0.00 0.00 0.00 4.30
4292 4489 4.566987 ACCTGAGACAAGTAATTCGGAAC 58.433 43.478 0.00 0.00 0.00 3.62
4333 4530 9.932207 TCACAATTTTGCTGAAGATCAAATATT 57.068 25.926 0.00 0.00 32.92 1.28
4336 4533 7.781548 ATTTTGCTGAAGATCAAATATTGGC 57.218 32.000 0.00 0.00 32.92 4.52
4376 4573 4.063529 ACCATCGGTGCTTGTGTG 57.936 55.556 0.00 0.00 32.98 3.82
4382 4579 0.107897 TCGGTGCTTGTGTGTCTTGT 60.108 50.000 0.00 0.00 0.00 3.16
4386 4583 1.599542 GTGCTTGTGTGTCTTGTCTCC 59.400 52.381 0.00 0.00 0.00 3.71
4387 4584 0.861837 GCTTGTGTGTCTTGTCTCCG 59.138 55.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.945668 CTGACAAAGCCATAGGGTTAGC 59.054 50.000 0.38 0.00 43.04 3.09
7 8 3.313526 GTGTATGCCTGACAAAGCCATAG 59.686 47.826 0.00 0.00 0.00 2.23
9 10 2.094675 GTGTATGCCTGACAAAGCCAT 58.905 47.619 0.00 0.00 0.00 4.40
12 13 1.533625 TGGTGTATGCCTGACAAAGC 58.466 50.000 0.00 0.00 0.00 3.51
31 32 7.798710 TTTTCCTCCTCTCGGATATCATATT 57.201 36.000 4.83 0.00 39.01 1.28
42 43 1.946283 GCCACCTTTTTCCTCCTCTCG 60.946 57.143 0.00 0.00 0.00 4.04
119 120 8.061890 ACCATTTTCTATCTATCCCTGGAAAT 57.938 34.615 0.00 0.00 0.00 2.17
125 126 6.101734 TGCAGAACCATTTTCTATCTATCCCT 59.898 38.462 0.00 0.00 0.00 4.20
200 201 5.220931 GCCGAGAAGCATGATTCTGTATTTT 60.221 40.000 29.68 4.96 39.63 1.82
207 208 1.950828 CAGCCGAGAAGCATGATTCT 58.049 50.000 25.46 25.46 42.23 2.40
240 241 2.553028 GGCACACTCCAATGAAGAAGGA 60.553 50.000 0.00 0.00 0.00 3.36
267 268 4.590222 ACAATGCTGATCTTTTTCCAAGGT 59.410 37.500 0.00 0.00 0.00 3.50
309 310 8.801299 ACTCTCACACATTCACCTATATATCAG 58.199 37.037 0.00 0.00 0.00 2.90
363 364 2.072298 AGCGAAATCAGACTTGTGAGC 58.928 47.619 0.00 0.00 0.00 4.26
368 369 3.496130 ACTTGTGAGCGAAATCAGACTTG 59.504 43.478 0.00 0.00 0.00 3.16
369 370 3.733337 ACTTGTGAGCGAAATCAGACTT 58.267 40.909 0.00 0.00 0.00 3.01
373 374 3.862267 CCTAGACTTGTGAGCGAAATCAG 59.138 47.826 0.00 0.00 0.00 2.90
375 376 3.851098 ACCTAGACTTGTGAGCGAAATC 58.149 45.455 0.00 0.00 0.00 2.17
376 377 3.963428 ACCTAGACTTGTGAGCGAAAT 57.037 42.857 0.00 0.00 0.00 2.17
377 378 3.825014 AGTACCTAGACTTGTGAGCGAAA 59.175 43.478 0.00 0.00 0.00 3.46
379 380 2.747989 CAGTACCTAGACTTGTGAGCGA 59.252 50.000 0.00 0.00 0.00 4.93
380 381 2.488545 ACAGTACCTAGACTTGTGAGCG 59.511 50.000 0.00 0.00 0.00 5.03
381 382 3.759618 AGACAGTACCTAGACTTGTGAGC 59.240 47.826 0.00 0.00 0.00 4.26
382 383 5.391097 CGAAGACAGTACCTAGACTTGTGAG 60.391 48.000 0.00 0.00 0.00 3.51
395 465 3.741344 AGTTTGCACATCGAAGACAGTAC 59.259 43.478 0.00 0.00 42.51 2.73
424 494 2.636893 AGGAAGATATGAGCGGCATCTT 59.363 45.455 11.67 11.67 40.76 2.40
431 501 2.865670 GCAGTGGAGGAAGATATGAGCG 60.866 54.545 0.00 0.00 0.00 5.03
454 524 7.408756 AAAATATGAGCAAACTTATGAGGCA 57.591 32.000 0.00 0.00 0.00 4.75
481 551 9.995003 AAAACTAAAATTGCCATGATCTACAAA 57.005 25.926 0.00 0.00 0.00 2.83
505 575 8.408043 AGTACTGGAATTGTCATCATCAAAAA 57.592 30.769 0.00 0.00 0.00 1.94
506 576 8.408043 AAGTACTGGAATTGTCATCATCAAAA 57.592 30.769 0.00 0.00 0.00 2.44
508 578 7.665145 TCAAAGTACTGGAATTGTCATCATCAA 59.335 33.333 0.00 0.00 0.00 2.57
512 582 5.705441 GGTCAAAGTACTGGAATTGTCATCA 59.295 40.000 0.00 0.00 0.00 3.07
513 583 5.705441 TGGTCAAAGTACTGGAATTGTCATC 59.295 40.000 0.00 0.00 0.00 2.92
514 584 5.630121 TGGTCAAAGTACTGGAATTGTCAT 58.370 37.500 0.00 0.00 0.00 3.06
516 586 5.705441 TCATGGTCAAAGTACTGGAATTGTC 59.295 40.000 0.00 0.00 0.00 3.18
517 587 5.630121 TCATGGTCAAAGTACTGGAATTGT 58.370 37.500 0.00 0.00 0.00 2.71
519 589 7.595819 TTTTCATGGTCAAAGTACTGGAATT 57.404 32.000 0.00 0.00 0.00 2.17
520 590 7.781324 ATTTTCATGGTCAAAGTACTGGAAT 57.219 32.000 0.00 0.00 0.00 3.01
522 592 8.877864 AATATTTTCATGGTCAAAGTACTGGA 57.122 30.769 0.00 0.00 0.00 3.86
548 618 7.814264 AAAATTGCCATGGTTCATACAAAAA 57.186 28.000 14.67 0.00 0.00 1.94
549 619 8.908786 TTAAAATTGCCATGGTTCATACAAAA 57.091 26.923 14.67 0.00 0.00 2.44
550 620 8.153550 ACTTAAAATTGCCATGGTTCATACAAA 58.846 29.630 14.67 0.00 0.00 2.83
551 621 7.601886 CACTTAAAATTGCCATGGTTCATACAA 59.398 33.333 14.67 8.14 0.00 2.41
552 622 7.095910 CACTTAAAATTGCCATGGTTCATACA 58.904 34.615 14.67 0.00 0.00 2.29
553 623 6.035975 GCACTTAAAATTGCCATGGTTCATAC 59.964 38.462 14.67 0.00 32.21 2.39
554 624 6.105333 GCACTTAAAATTGCCATGGTTCATA 58.895 36.000 14.67 0.00 32.21 2.15
555 625 4.937015 GCACTTAAAATTGCCATGGTTCAT 59.063 37.500 14.67 0.00 32.21 2.57
556 626 4.202295 TGCACTTAAAATTGCCATGGTTCA 60.202 37.500 14.67 0.00 38.00 3.18
557 627 4.314121 TGCACTTAAAATTGCCATGGTTC 58.686 39.130 14.67 0.00 38.00 3.62
558 628 4.348863 TGCACTTAAAATTGCCATGGTT 57.651 36.364 14.67 1.29 38.00 3.67
559 629 4.255301 CATGCACTTAAAATTGCCATGGT 58.745 39.130 14.67 0.00 38.00 3.55
560 630 4.255301 ACATGCACTTAAAATTGCCATGG 58.745 39.130 7.63 7.63 38.00 3.66
561 631 6.757478 TGATACATGCACTTAAAATTGCCATG 59.243 34.615 0.00 8.43 38.00 3.66
562 632 6.876155 TGATACATGCACTTAAAATTGCCAT 58.124 32.000 0.00 0.00 38.00 4.40
563 633 6.278172 TGATACATGCACTTAAAATTGCCA 57.722 33.333 0.00 0.00 38.00 4.92
564 634 6.201425 CCATGATACATGCACTTAAAATTGCC 59.799 38.462 0.00 0.00 38.00 4.52
565 635 6.292488 GCCATGATACATGCACTTAAAATTGC 60.292 38.462 0.00 0.00 39.33 3.56
566 636 6.757478 TGCCATGATACATGCACTTAAAATTG 59.243 34.615 0.00 0.00 0.00 2.32
567 637 6.876155 TGCCATGATACATGCACTTAAAATT 58.124 32.000 0.00 0.00 0.00 1.82
568 638 6.468333 TGCCATGATACATGCACTTAAAAT 57.532 33.333 0.00 0.00 0.00 1.82
569 639 5.911378 TGCCATGATACATGCACTTAAAA 57.089 34.783 0.00 0.00 0.00 1.52
570 640 5.911378 TTGCCATGATACATGCACTTAAA 57.089 34.783 0.00 0.00 32.63 1.52
571 641 6.468333 AATTGCCATGATACATGCACTTAA 57.532 33.333 0.00 0.00 32.63 1.85
572 642 6.468333 AAATTGCCATGATACATGCACTTA 57.532 33.333 0.00 0.00 32.63 2.24
573 643 5.347620 AAATTGCCATGATACATGCACTT 57.652 34.783 0.00 6.23 32.63 3.16
574 644 5.347620 AAAATTGCCATGATACATGCACT 57.652 34.783 0.00 1.37 32.63 4.40
575 645 6.275335 ACTAAAATTGCCATGATACATGCAC 58.725 36.000 0.00 2.20 32.63 4.57
576 646 6.468333 ACTAAAATTGCCATGATACATGCA 57.532 33.333 0.00 0.00 0.00 3.96
577 647 7.775397 AAACTAAAATTGCCATGATACATGC 57.225 32.000 0.00 3.56 0.00 4.06
586 656 9.275398 CCATGCATTATAAACTAAAATTGCCAT 57.725 29.630 0.00 0.00 0.00 4.40
587 657 7.226325 GCCATGCATTATAAACTAAAATTGCCA 59.774 33.333 0.00 0.00 0.00 4.92
588 658 7.226325 TGCCATGCATTATAAACTAAAATTGCC 59.774 33.333 0.00 0.00 31.71 4.52
589 659 8.140677 TGCCATGCATTATAAACTAAAATTGC 57.859 30.769 0.00 0.00 31.71 3.56
591 661 9.889128 ACTTGCCATGCATTATAAACTAAAATT 57.111 25.926 0.00 0.00 38.76 1.82
592 662 9.533253 GACTTGCCATGCATTATAAACTAAAAT 57.467 29.630 0.00 0.00 38.76 1.82
593 663 8.748412 AGACTTGCCATGCATTATAAACTAAAA 58.252 29.630 0.00 0.00 38.76 1.52
594 664 8.292444 AGACTTGCCATGCATTATAAACTAAA 57.708 30.769 0.00 0.00 38.76 1.85
595 665 7.880160 AGACTTGCCATGCATTATAAACTAA 57.120 32.000 0.00 0.00 38.76 2.24
596 666 8.210946 ACTAGACTTGCCATGCATTATAAACTA 58.789 33.333 0.00 0.00 38.76 2.24
597 667 7.056635 ACTAGACTTGCCATGCATTATAAACT 58.943 34.615 0.00 0.00 38.76 2.66
598 668 7.264373 ACTAGACTTGCCATGCATTATAAAC 57.736 36.000 0.00 0.00 38.76 2.01
599 669 7.880160 AACTAGACTTGCCATGCATTATAAA 57.120 32.000 0.00 0.00 38.76 1.40
600 670 7.775093 AGAAACTAGACTTGCCATGCATTATAA 59.225 33.333 0.00 0.00 38.76 0.98
601 671 7.282585 AGAAACTAGACTTGCCATGCATTATA 58.717 34.615 0.00 0.00 38.76 0.98
602 672 6.125029 AGAAACTAGACTTGCCATGCATTAT 58.875 36.000 0.00 0.00 38.76 1.28
603 673 5.500234 AGAAACTAGACTTGCCATGCATTA 58.500 37.500 0.00 0.00 38.76 1.90
604 674 4.338879 AGAAACTAGACTTGCCATGCATT 58.661 39.130 0.00 0.00 38.76 3.56
605 675 3.960571 AGAAACTAGACTTGCCATGCAT 58.039 40.909 0.00 0.00 38.76 3.96
606 676 3.423539 AGAAACTAGACTTGCCATGCA 57.576 42.857 0.00 0.00 36.47 3.96
607 677 5.880054 TTAAGAAACTAGACTTGCCATGC 57.120 39.130 0.00 0.00 0.00 4.06
608 678 7.337942 AGGAATTAAGAAACTAGACTTGCCATG 59.662 37.037 0.00 0.00 0.00 3.66
609 679 7.406104 AGGAATTAAGAAACTAGACTTGCCAT 58.594 34.615 0.00 0.00 0.00 4.40
610 680 6.779860 AGGAATTAAGAAACTAGACTTGCCA 58.220 36.000 0.00 0.00 0.00 4.92
611 681 6.879458 TGAGGAATTAAGAAACTAGACTTGCC 59.121 38.462 0.00 1.71 0.00 4.52
612 682 7.907214 TGAGGAATTAAGAAACTAGACTTGC 57.093 36.000 0.00 0.00 0.00 4.01
657 727 8.575589 TGTTTCAGCTATTTTCTTCTGCATTTA 58.424 29.630 0.00 0.00 0.00 1.40
658 728 7.436118 TGTTTCAGCTATTTTCTTCTGCATTT 58.564 30.769 0.00 0.00 0.00 2.32
659 729 6.985117 TGTTTCAGCTATTTTCTTCTGCATT 58.015 32.000 0.00 0.00 0.00 3.56
662 732 8.400947 TGATATGTTTCAGCTATTTTCTTCTGC 58.599 33.333 0.00 0.00 0.00 4.26
665 735 9.674824 CCATGATATGTTTCAGCTATTTTCTTC 57.325 33.333 0.00 0.00 0.00 2.87
668 738 7.428020 TGCCATGATATGTTTCAGCTATTTTC 58.572 34.615 0.00 0.00 0.00 2.29
669 739 7.350744 TGCCATGATATGTTTCAGCTATTTT 57.649 32.000 0.00 0.00 0.00 1.82
670 740 6.964807 TGCCATGATATGTTTCAGCTATTT 57.035 33.333 0.00 0.00 0.00 1.40
671 741 6.548622 AGTTGCCATGATATGTTTCAGCTATT 59.451 34.615 0.00 0.00 0.00 1.73
673 743 5.439721 AGTTGCCATGATATGTTTCAGCTA 58.560 37.500 0.00 0.00 0.00 3.32
674 744 4.275810 AGTTGCCATGATATGTTTCAGCT 58.724 39.130 0.00 0.00 0.00 4.24
675 745 4.644103 AGTTGCCATGATATGTTTCAGC 57.356 40.909 0.00 0.00 0.00 4.26
676 746 7.699391 CACTAAAGTTGCCATGATATGTTTCAG 59.301 37.037 0.00 0.00 0.00 3.02
678 748 7.538575 ACACTAAAGTTGCCATGATATGTTTC 58.461 34.615 0.00 0.00 0.00 2.78
679 749 7.466746 ACACTAAAGTTGCCATGATATGTTT 57.533 32.000 0.00 0.00 0.00 2.83
680 750 8.574251 TTACACTAAAGTTGCCATGATATGTT 57.426 30.769 0.00 0.00 0.00 2.71
681 751 8.458843 GTTTACACTAAAGTTGCCATGATATGT 58.541 33.333 0.00 0.00 0.00 2.29
682 752 8.458052 TGTTTACACTAAAGTTGCCATGATATG 58.542 33.333 0.00 0.00 0.00 1.78
683 753 8.574251 TGTTTACACTAAAGTTGCCATGATAT 57.426 30.769 0.00 0.00 0.00 1.63
684 754 7.987750 TGTTTACACTAAAGTTGCCATGATA 57.012 32.000 0.00 0.00 0.00 2.15
685 755 6.892658 TGTTTACACTAAAGTTGCCATGAT 57.107 33.333 0.00 0.00 0.00 2.45
686 756 6.488344 TGATGTTTACACTAAAGTTGCCATGA 59.512 34.615 0.00 0.00 0.00 3.07
689 759 6.892658 ATGATGTTTACACTAAAGTTGCCA 57.107 33.333 0.00 0.00 0.00 4.92
690 760 6.089417 GCAATGATGTTTACACTAAAGTTGCC 59.911 38.462 0.00 0.00 0.00 4.52
691 761 6.640499 TGCAATGATGTTTACACTAAAGTTGC 59.360 34.615 0.00 0.00 0.00 4.17
692 762 8.572828 TTGCAATGATGTTTACACTAAAGTTG 57.427 30.769 0.00 0.00 0.00 3.16
693 763 9.762933 AATTGCAATGATGTTTACACTAAAGTT 57.237 25.926 13.82 0.00 0.00 2.66
694 764 9.410556 GAATTGCAATGATGTTTACACTAAAGT 57.589 29.630 13.82 0.00 0.00 2.66
696 766 9.926158 ATGAATTGCAATGATGTTTACACTAAA 57.074 25.926 13.82 0.00 0.00 1.85
698 768 8.522003 ACATGAATTGCAATGATGTTTACACTA 58.478 29.630 22.78 0.00 0.00 2.74
699 769 7.329962 CACATGAATTGCAATGATGTTTACACT 59.670 33.333 24.66 3.63 0.00 3.55
700 770 7.449827 CACATGAATTGCAATGATGTTTACAC 58.550 34.615 24.66 6.23 0.00 2.90
701 771 6.091034 GCACATGAATTGCAATGATGTTTACA 59.909 34.615 24.66 12.08 39.93 2.41
702 772 6.091034 TGCACATGAATTGCAATGATGTTTAC 59.909 34.615 24.66 19.25 46.90 2.01
704 774 4.998033 TGCACATGAATTGCAATGATGTTT 59.002 33.333 24.66 7.37 46.90 2.83
705 775 4.570930 TGCACATGAATTGCAATGATGTT 58.429 34.783 24.66 8.02 46.90 2.71
723 793 8.647226 GGTTAAAAATTGTCATGTCTATTGCAC 58.353 33.333 1.10 0.00 0.00 4.57
724 794 8.363390 TGGTTAAAAATTGTCATGTCTATTGCA 58.637 29.630 1.10 0.00 0.00 4.08
725 795 8.755696 TGGTTAAAAATTGTCATGTCTATTGC 57.244 30.769 1.10 0.00 0.00 3.56
778 848 9.092876 GACGAGATCTTCAAAACTAAATCTCAT 57.907 33.333 0.00 0.00 39.24 2.90
779 849 7.273598 CGACGAGATCTTCAAAACTAAATCTCA 59.726 37.037 0.00 0.00 39.24 3.27
780 850 7.605259 CGACGAGATCTTCAAAACTAAATCTC 58.395 38.462 0.00 0.00 37.07 2.75
781 851 6.035112 GCGACGAGATCTTCAAAACTAAATCT 59.965 38.462 0.00 0.00 0.00 2.40
782 852 6.179193 GCGACGAGATCTTCAAAACTAAATC 58.821 40.000 0.00 0.00 0.00 2.17
783 853 5.220228 CGCGACGAGATCTTCAAAACTAAAT 60.220 40.000 0.00 0.00 0.00 1.40
784 854 4.089493 CGCGACGAGATCTTCAAAACTAAA 59.911 41.667 0.00 0.00 0.00 1.85
786 856 3.120095 TCGCGACGAGATCTTCAAAACTA 60.120 43.478 3.71 0.00 0.00 2.24
787 857 1.986378 CGCGACGAGATCTTCAAAACT 59.014 47.619 0.00 0.00 0.00 2.66
789 859 2.341318 TCGCGACGAGATCTTCAAAA 57.659 45.000 3.71 0.00 0.00 2.44
801 871 1.847818 TCATTAAATCCCTCGCGACG 58.152 50.000 3.71 0.04 0.00 5.12
802 872 3.390135 TCATCATTAAATCCCTCGCGAC 58.610 45.455 3.71 0.00 0.00 5.19
803 873 3.744238 TCATCATTAAATCCCTCGCGA 57.256 42.857 9.26 9.26 0.00 5.87
804 874 4.776743 CTTTCATCATTAAATCCCTCGCG 58.223 43.478 0.00 0.00 0.00 5.87
806 876 4.776743 CGCTTTCATCATTAAATCCCTCG 58.223 43.478 0.00 0.00 0.00 4.63
808 878 3.953612 TGCGCTTTCATCATTAAATCCCT 59.046 39.130 9.73 0.00 0.00 4.20
810 880 5.766222 AGATGCGCTTTCATCATTAAATCC 58.234 37.500 9.73 0.00 43.94 3.01
811 881 6.914215 TGAAGATGCGCTTTCATCATTAAATC 59.086 34.615 9.73 0.00 43.94 2.17
812 882 6.798482 TGAAGATGCGCTTTCATCATTAAAT 58.202 32.000 9.73 0.00 43.94 1.40
814 884 5.816449 TGAAGATGCGCTTTCATCATTAA 57.184 34.783 9.73 0.00 43.94 1.40
816 886 4.707030 TTGAAGATGCGCTTTCATCATT 57.293 36.364 18.37 6.62 43.94 2.57
817 887 4.554134 CGATTGAAGATGCGCTTTCATCAT 60.554 41.667 18.37 12.33 43.94 2.45
819 889 3.286576 CGATTGAAGATGCGCTTTCATC 58.713 45.455 18.37 13.62 42.32 2.92
820 890 2.032550 CCGATTGAAGATGCGCTTTCAT 59.967 45.455 18.37 6.00 36.83 2.57
821 891 1.398041 CCGATTGAAGATGCGCTTTCA 59.602 47.619 9.73 13.30 36.83 2.69
822 892 1.665679 TCCGATTGAAGATGCGCTTTC 59.334 47.619 9.73 10.73 36.83 2.62
823 893 1.737838 TCCGATTGAAGATGCGCTTT 58.262 45.000 9.73 0.00 36.83 3.51
824 894 1.959042 ATCCGATTGAAGATGCGCTT 58.041 45.000 9.73 0.55 40.25 4.68
826 896 2.763249 AAATCCGATTGAAGATGCGC 57.237 45.000 0.00 0.00 0.00 6.09
827 897 4.037690 GGAAAAATCCGATTGAAGATGCG 58.962 43.478 0.00 0.00 0.00 4.73
828 898 4.997565 TGGAAAAATCCGATTGAAGATGC 58.002 39.130 0.00 0.00 0.00 3.91
829 899 9.585099 TTAAATGGAAAAATCCGATTGAAGATG 57.415 29.630 0.00 0.00 0.00 2.90
830 900 9.807649 CTTAAATGGAAAAATCCGATTGAAGAT 57.192 29.630 0.00 0.00 29.65 2.40
832 902 9.294030 CTCTTAAATGGAAAAATCCGATTGAAG 57.706 33.333 0.00 8.98 0.00 3.02
833 903 9.019656 TCTCTTAAATGGAAAAATCCGATTGAA 57.980 29.630 0.00 0.00 0.00 2.69
834 904 8.574251 TCTCTTAAATGGAAAAATCCGATTGA 57.426 30.769 0.00 0.00 0.00 2.57
893 963 4.023291 GTCACCATATCATGTGGGGTTTT 58.977 43.478 2.04 0.00 41.07 2.43
894 964 3.011144 TGTCACCATATCATGTGGGGTTT 59.989 43.478 2.04 0.00 41.07 3.27
895 965 2.580322 TGTCACCATATCATGTGGGGTT 59.420 45.455 2.04 0.00 41.07 4.11
896 966 2.204463 TGTCACCATATCATGTGGGGT 58.796 47.619 2.04 0.00 41.07 4.95
897 967 3.151554 CATGTCACCATATCATGTGGGG 58.848 50.000 5.27 0.00 41.66 4.96
898 968 3.151554 CCATGTCACCATATCATGTGGG 58.848 50.000 5.27 0.00 41.14 4.61
899 969 2.555325 GCCATGTCACCATATCATGTGG 59.445 50.000 0.00 0.00 42.55 4.17
900 970 2.224784 CGCCATGTCACCATATCATGTG 59.775 50.000 0.00 0.00 37.73 3.21
902 972 2.497138 ACGCCATGTCACCATATCATG 58.503 47.619 0.00 0.00 38.72 3.07
903 973 2.936919 ACGCCATGTCACCATATCAT 57.063 45.000 0.00 0.00 0.00 2.45
904 974 2.698274 ACTACGCCATGTCACCATATCA 59.302 45.455 0.00 0.00 0.00 2.15
906 976 2.965831 AGACTACGCCATGTCACCATAT 59.034 45.455 0.00 0.00 35.81 1.78
907 977 2.100749 CAGACTACGCCATGTCACCATA 59.899 50.000 0.00 0.00 35.81 2.74
908 978 1.134699 CAGACTACGCCATGTCACCAT 60.135 52.381 0.00 0.00 35.81 3.55
909 979 0.246360 CAGACTACGCCATGTCACCA 59.754 55.000 0.00 0.00 35.81 4.17
911 981 1.336887 ACACAGACTACGCCATGTCAC 60.337 52.381 0.00 0.00 35.81 3.67
913 983 1.067846 TGACACAGACTACGCCATGTC 60.068 52.381 0.00 0.00 37.54 3.06
914 984 0.966179 TGACACAGACTACGCCATGT 59.034 50.000 0.00 0.00 0.00 3.21
915 985 1.929169 CATGACACAGACTACGCCATG 59.071 52.381 0.00 0.00 0.00 3.66
916 986 1.824852 TCATGACACAGACTACGCCAT 59.175 47.619 0.00 0.00 0.00 4.40
917 987 1.202348 CTCATGACACAGACTACGCCA 59.798 52.381 0.00 0.00 0.00 5.69
918 988 1.914634 CTCATGACACAGACTACGCC 58.085 55.000 0.00 0.00 0.00 5.68
919 989 1.272781 GCTCATGACACAGACTACGC 58.727 55.000 0.00 0.00 0.00 4.42
920 990 1.135660 ACGCTCATGACACAGACTACG 60.136 52.381 0.00 0.00 0.00 3.51
921 991 2.254459 CACGCTCATGACACAGACTAC 58.746 52.381 0.00 0.00 0.00 2.73
922 992 1.886542 ACACGCTCATGACACAGACTA 59.113 47.619 0.00 0.00 0.00 2.59
923 993 0.676184 ACACGCTCATGACACAGACT 59.324 50.000 0.00 0.00 0.00 3.24
924 994 0.786581 CACACGCTCATGACACAGAC 59.213 55.000 0.00 0.00 0.00 3.51
925 995 0.319813 CCACACGCTCATGACACAGA 60.320 55.000 0.00 0.00 0.00 3.41
926 996 1.293963 CCCACACGCTCATGACACAG 61.294 60.000 0.00 0.00 0.00 3.66
927 997 1.301637 CCCACACGCTCATGACACA 60.302 57.895 0.00 0.00 0.00 3.72
928 998 2.680913 GCCCACACGCTCATGACAC 61.681 63.158 0.00 0.00 0.00 3.67
929 999 2.358615 GCCCACACGCTCATGACA 60.359 61.111 0.00 0.00 0.00 3.58
930 1000 2.046892 AGCCCACACGCTCATGAC 60.047 61.111 0.00 0.00 32.06 3.06
987 1057 1.542987 GCTCTCATTCTCCTCCCATGC 60.543 57.143 0.00 0.00 0.00 4.06
1053 1123 3.426568 GAAGCCAGCTGTGCCGTC 61.427 66.667 19.56 14.69 0.00 4.79
1254 1330 3.213402 GAGGACGAGGAGGAGGCG 61.213 72.222 0.00 0.00 0.00 5.52
1350 1426 2.048127 GTGGTGAGGAGGTGCGAC 60.048 66.667 0.00 0.00 0.00 5.19
1368 1444 4.925576 CGAGCGAAGGCGGCGTAT 62.926 66.667 9.37 0.00 46.35 3.06
1439 1515 1.068748 TGAAGTCGTACGTGAAGGAGC 60.069 52.381 16.05 0.00 0.00 4.70
1548 1624 0.959867 TCAACGCATCCACCATGGTG 60.960 55.000 34.08 34.08 45.02 4.17
1708 1784 2.046507 CCTCACCCTGCAGCTGAC 60.047 66.667 20.43 9.67 0.00 3.51
1792 1868 0.466189 GCCAATCCCACGATGGACAT 60.466 55.000 5.71 0.00 40.96 3.06
1806 1882 6.747280 CGAAGAAGTTTGATTTAATCGCCAAT 59.253 34.615 0.23 0.00 0.00 3.16
1830 1906 0.317436 GTACCTCGATGCTGCTCTCG 60.317 60.000 15.70 15.70 36.25 4.04
1870 1946 1.144298 TGCATCCCCCATTCTCAGATG 59.856 52.381 0.00 0.00 37.87 2.90
1875 1951 1.906990 CATCTGCATCCCCCATTCTC 58.093 55.000 0.00 0.00 0.00 2.87
1892 1968 0.251165 AAACACCTTACGGGCTGCAT 60.251 50.000 0.50 0.00 39.10 3.96
1986 2062 2.991076 AAGAACCCGTCGAGCTCCG 61.991 63.158 8.47 6.78 40.25 4.63
2070 2146 3.127533 ACCGCTTCTGCCGCATTC 61.128 61.111 0.00 0.00 35.36 2.67
2172 2248 1.999071 CTCCTCCTCGCAAGTCCTCG 61.999 65.000 0.00 0.00 39.48 4.63
2586 2662 2.877168 GGTCTTAGCATGAGCCATCTTG 59.123 50.000 0.00 0.00 43.56 3.02
2607 2683 4.327982 TTCCTCGATTCCTAGCTTGATG 57.672 45.455 0.00 0.00 0.00 3.07
2640 2716 3.323691 ACATGTCACTAAGTGCAGTACCA 59.676 43.478 0.00 0.00 32.98 3.25
2643 2719 5.109210 GCATACATGTCACTAAGTGCAGTA 58.891 41.667 0.00 0.00 32.98 2.74
2673 2749 1.213296 TGGAGCTCTGTAAATCCCCC 58.787 55.000 14.64 0.00 0.00 5.40
2788 2864 9.151177 AGTTGCCATCATATCCTCAAATAAAAT 57.849 29.630 0.00 0.00 0.00 1.82
2822 2898 4.519540 AAAAATGTATGCTCGTTTGGCT 57.480 36.364 0.00 0.00 0.00 4.75
2823 2899 4.265320 GCTAAAAATGTATGCTCGTTTGGC 59.735 41.667 0.00 0.00 0.00 4.52
2904 2980 1.949799 TACCCCATGCCTGCATTTTT 58.050 45.000 0.97 0.00 33.90 1.94
3066 3142 5.663106 AGCAATCTCCTCATTCCTGTAAGTA 59.337 40.000 0.00 0.00 0.00 2.24
3141 3217 7.755373 GCATACATATTCGAGAGTAGCACATAA 59.245 37.037 0.00 0.00 0.00 1.90
3322 3398 7.495934 CCACATTAGTAAATCCAAGATCTCGTT 59.504 37.037 0.00 0.00 0.00 3.85
3324 3400 6.425114 CCCACATTAGTAAATCCAAGATCTCG 59.575 42.308 0.00 0.00 0.00 4.04
3390 3467 5.755409 TCTATTTTGTCTAAGGCTGTCCA 57.245 39.130 0.00 0.00 33.74 4.02
3456 3545 4.054671 CAAGATCATTCTCCGGAAGTAGC 58.945 47.826 5.23 0.00 34.70 3.58
3460 3549 3.386078 TCCTCAAGATCATTCTCCGGAAG 59.614 47.826 5.23 0.00 34.70 3.46
3464 3553 5.819379 TCAAATTCCTCAAGATCATTCTCCG 59.181 40.000 0.00 0.00 0.00 4.63
3493 3582 2.159382 ACAACCAACATAAAGGGAGCG 58.841 47.619 0.00 0.00 0.00 5.03
3494 3583 3.421844 AGACAACCAACATAAAGGGAGC 58.578 45.455 0.00 0.00 0.00 4.70
3500 3589 7.809546 TGTACATCAAGACAACCAACATAAA 57.190 32.000 0.00 0.00 0.00 1.40
3503 3592 6.149973 CAGATGTACATCAAGACAACCAACAT 59.850 38.462 32.01 8.37 40.22 2.71
3509 3598 5.063186 CAGAGCAGATGTACATCAAGACAAC 59.937 44.000 32.01 17.80 40.22 3.32
3515 3604 3.615224 TGCAGAGCAGATGTACATCAA 57.385 42.857 32.01 8.87 40.22 2.57
3516 3605 3.615224 TTGCAGAGCAGATGTACATCA 57.385 42.857 32.01 11.36 40.61 3.07
3524 3613 5.618236 TGCTATAGAATTTGCAGAGCAGAT 58.382 37.500 3.21 0.00 40.61 2.90
3525 3614 5.027293 TGCTATAGAATTTGCAGAGCAGA 57.973 39.130 3.21 0.00 40.61 4.26
3541 3659 3.194861 GTGCAATCACGAACCTGCTATA 58.805 45.455 0.00 0.00 35.78 1.31
3556 3674 4.959210 AGTATACTCCTCAGTGAGTGCAAT 59.041 41.667 18.74 9.36 45.03 3.56
3557 3675 4.344978 AGTATACTCCTCAGTGAGTGCAA 58.655 43.478 18.74 2.49 45.03 4.08
3561 3679 5.194473 TCCAAGTATACTCCTCAGTGAGT 57.806 43.478 18.74 4.12 46.90 3.41
3562 3680 6.531503 TTTCCAAGTATACTCCTCAGTGAG 57.468 41.667 13.56 13.56 38.37 3.51
3567 3685 6.632672 GCCAGATTTTCCAAGTATACTCCTCA 60.633 42.308 5.70 0.00 0.00 3.86
3568 3686 5.760743 GCCAGATTTTCCAAGTATACTCCTC 59.239 44.000 5.70 0.00 0.00 3.71
3601 3753 0.597568 TGCTCAAAATCGTTGGCCAG 59.402 50.000 5.11 0.00 0.00 4.85
3609 3761 6.603237 TGGTGATAATACTGCTCAAAATCG 57.397 37.500 0.00 0.00 0.00 3.34
3630 3783 1.315690 CAGGGTGAAGCATAGCATGG 58.684 55.000 0.00 0.00 0.00 3.66
3635 3788 0.835941 AGGAGCAGGGTGAAGCATAG 59.164 55.000 0.00 0.00 0.00 2.23
3658 3811 2.033801 AGACCATGCAAAGCGATAATGC 59.966 45.455 4.58 4.58 40.45 3.56
3665 3818 3.429085 GTTATCAAGACCATGCAAAGCG 58.571 45.455 0.00 0.00 0.00 4.68
3666 3819 3.445096 AGGTTATCAAGACCATGCAAAGC 59.555 43.478 0.00 0.00 39.71 3.51
3667 3820 4.142315 CCAGGTTATCAAGACCATGCAAAG 60.142 45.833 0.00 0.00 39.71 2.77
3678 3838 5.923733 AGTCTACACTCCAGGTTATCAAG 57.076 43.478 0.00 0.00 0.00 3.02
3696 3856 7.615403 TCATATGAAGTACAGCAGAAAAGTCT 58.385 34.615 1.98 0.00 32.85 3.24
3703 3863 8.969260 AATCAAATCATATGAAGTACAGCAGA 57.031 30.769 9.99 0.00 0.00 4.26
3711 3871 8.267620 TCACGTCAAATCAAATCATATGAAGT 57.732 30.769 9.99 0.00 31.37 3.01
3712 3872 9.726232 ATTCACGTCAAATCAAATCATATGAAG 57.274 29.630 9.99 3.28 0.00 3.02
3719 3879 4.454161 ACCGATTCACGTCAAATCAAATCA 59.546 37.500 16.41 0.00 40.78 2.57
3720 3880 4.969816 ACCGATTCACGTCAAATCAAATC 58.030 39.130 16.41 4.60 40.78 2.17
3721 3881 5.371115 AACCGATTCACGTCAAATCAAAT 57.629 34.783 16.41 3.02 40.78 2.32
3722 3882 4.822036 AACCGATTCACGTCAAATCAAA 57.178 36.364 16.41 0.00 40.78 2.69
3723 3883 4.273724 TGAAACCGATTCACGTCAAATCAA 59.726 37.500 16.41 0.00 43.08 2.57
3742 3902 5.277490 CGTTTTCTCTGCTGTTCATCTGAAA 60.277 40.000 0.00 0.00 35.58 2.69
3782 3942 1.933853 CTAGCAGGCAAATACGACACC 59.066 52.381 0.00 0.00 0.00 4.16
3790 3950 2.431954 AGATGTGCTAGCAGGCAAAT 57.568 45.000 20.03 7.06 44.18 2.32
3796 3956 2.681848 CCCAGAAAAGATGTGCTAGCAG 59.318 50.000 20.03 1.63 0.00 4.24
3825 3985 4.096833 TGGTCAGACAAATCAATGCATAGC 59.903 41.667 0.00 0.00 0.00 2.97
3829 3989 5.231702 CAATTGGTCAGACAAATCAATGCA 58.768 37.500 3.45 0.00 33.48 3.96
3849 4009 2.364002 CCAAAGTCCAAACCGTTCCAAT 59.636 45.455 0.00 0.00 0.00 3.16
3854 4014 1.213430 TCCTCCAAAGTCCAAACCGTT 59.787 47.619 0.00 0.00 0.00 4.44
3856 4016 1.812571 CATCCTCCAAAGTCCAAACCG 59.187 52.381 0.00 0.00 0.00 4.44
3865 4025 8.210946 TCTGTGGTATATTTACATCCTCCAAAG 58.789 37.037 0.00 0.00 32.25 2.77
3866 4026 8.096621 TCTGTGGTATATTTACATCCTCCAAA 57.903 34.615 0.00 0.00 0.00 3.28
3867 4027 7.684317 TCTGTGGTATATTTACATCCTCCAA 57.316 36.000 0.00 0.00 0.00 3.53
3868 4028 7.202093 CCTTCTGTGGTATATTTACATCCTCCA 60.202 40.741 0.00 0.00 0.00 3.86
3869 4029 7.162082 CCTTCTGTGGTATATTTACATCCTCC 58.838 42.308 0.00 0.00 0.00 4.30
3870 4030 6.651225 GCCTTCTGTGGTATATTTACATCCTC 59.349 42.308 0.00 0.00 0.00 3.71
3871 4031 6.534634 GCCTTCTGTGGTATATTTACATCCT 58.465 40.000 0.00 0.00 0.00 3.24
3886 4046 0.514255 CACATGACACGCCTTCTGTG 59.486 55.000 0.00 0.00 42.99 3.66
3917 4077 4.235939 AGCTCGTCATACTCTATGCTTG 57.764 45.455 0.00 0.00 36.14 4.01
3918 4078 5.049060 CACTAGCTCGTCATACTCTATGCTT 60.049 44.000 0.00 0.00 36.14 3.91
3919 4079 4.454161 CACTAGCTCGTCATACTCTATGCT 59.546 45.833 0.00 0.00 36.14 3.79
3920 4080 4.214545 ACACTAGCTCGTCATACTCTATGC 59.785 45.833 0.00 0.00 36.14 3.14
3921 4081 5.237561 ACACACTAGCTCGTCATACTCTATG 59.762 44.000 0.00 0.00 37.52 2.23
3922 4082 5.369833 ACACACTAGCTCGTCATACTCTAT 58.630 41.667 0.00 0.00 0.00 1.98
3923 4083 4.767478 ACACACTAGCTCGTCATACTCTA 58.233 43.478 0.00 0.00 0.00 2.43
3924 4084 3.611970 ACACACTAGCTCGTCATACTCT 58.388 45.455 0.00 0.00 0.00 3.24
3925 4085 4.358494 AACACACTAGCTCGTCATACTC 57.642 45.455 0.00 0.00 0.00 2.59
3926 4086 4.217767 TCAAACACACTAGCTCGTCATACT 59.782 41.667 0.00 0.00 0.00 2.12
3927 4087 4.482386 TCAAACACACTAGCTCGTCATAC 58.518 43.478 0.00 0.00 0.00 2.39
3928 4088 4.776795 TCAAACACACTAGCTCGTCATA 57.223 40.909 0.00 0.00 0.00 2.15
3929 4089 3.660501 TCAAACACACTAGCTCGTCAT 57.339 42.857 0.00 0.00 0.00 3.06
3930 4090 3.120792 GTTCAAACACACTAGCTCGTCA 58.879 45.455 0.00 0.00 0.00 4.35
3931 4091 2.475487 GGTTCAAACACACTAGCTCGTC 59.525 50.000 0.00 0.00 0.00 4.20
3932 4092 2.102588 AGGTTCAAACACACTAGCTCGT 59.897 45.455 0.00 0.00 0.00 4.18
3933 4093 2.476619 CAGGTTCAAACACACTAGCTCG 59.523 50.000 0.00 0.00 0.00 5.03
3934 4094 2.224314 GCAGGTTCAAACACACTAGCTC 59.776 50.000 0.00 0.00 0.00 4.09
3935 4095 2.158755 AGCAGGTTCAAACACACTAGCT 60.159 45.455 0.00 0.00 0.00 3.32
3936 4096 2.031682 CAGCAGGTTCAAACACACTAGC 60.032 50.000 0.00 0.00 0.00 3.42
3947 4107 1.619654 CCATTCCAACAGCAGGTTCA 58.380 50.000 0.00 0.00 37.72 3.18
3951 4111 2.214376 TTACCCATTCCAACAGCAGG 57.786 50.000 0.00 0.00 0.00 4.85
3952 4112 2.231235 GGTTTACCCATTCCAACAGCAG 59.769 50.000 0.00 0.00 0.00 4.24
3992 4159 2.157738 CAGCTTTTCCTCCTTGTCCAG 58.842 52.381 0.00 0.00 0.00 3.86
3993 4160 1.819305 GCAGCTTTTCCTCCTTGTCCA 60.819 52.381 0.00 0.00 0.00 4.02
3994 4161 0.884514 GCAGCTTTTCCTCCTTGTCC 59.115 55.000 0.00 0.00 0.00 4.02
3995 4162 1.609208 TGCAGCTTTTCCTCCTTGTC 58.391 50.000 0.00 0.00 0.00 3.18
3996 4163 2.165998 GATGCAGCTTTTCCTCCTTGT 58.834 47.619 0.00 0.00 0.00 3.16
3997 4164 2.165167 TGATGCAGCTTTTCCTCCTTG 58.835 47.619 2.53 0.00 0.00 3.61
3998 4165 2.592102 TGATGCAGCTTTTCCTCCTT 57.408 45.000 2.53 0.00 0.00 3.36
4030 4197 3.713248 AGCATTATGATCACACCTGGAGA 59.287 43.478 0.00 0.00 0.00 3.71
4057 4254 5.841957 AATGAGCAGATTACCAAATGGAC 57.158 39.130 6.42 0.00 38.94 4.02
4087 4284 3.466836 TCGCTAAGCCAAATGTGGATAG 58.533 45.455 5.94 8.37 45.00 2.08
4105 4302 0.517316 AAACACGGAGAGCAATTCGC 59.483 50.000 0.00 0.00 42.91 4.70
4121 4318 4.092816 TCGCTCAAAAGTCAAAACGAAAC 58.907 39.130 0.00 0.00 0.00 2.78
4122 4319 4.093703 TCTCGCTCAAAAGTCAAAACGAAA 59.906 37.500 0.00 0.00 0.00 3.46
4141 4338 1.616865 TCACCAACCCTACAGTTCTCG 59.383 52.381 0.00 0.00 0.00 4.04
4143 4340 1.978580 CCTCACCAACCCTACAGTTCT 59.021 52.381 0.00 0.00 0.00 3.01
4151 4348 1.633945 GGTTATGACCTCACCAACCCT 59.366 52.381 0.00 0.00 42.99 4.34
4152 4349 2.124277 GGTTATGACCTCACCAACCC 57.876 55.000 0.00 0.00 42.99 4.11
4165 4362 7.110155 AGTTTGGAAGTGTAGTATGGGTTATG 58.890 38.462 0.00 0.00 0.00 1.90
4167 4364 6.691255 AGTTTGGAAGTGTAGTATGGGTTA 57.309 37.500 0.00 0.00 0.00 2.85
4168 4365 5.578157 AGTTTGGAAGTGTAGTATGGGTT 57.422 39.130 0.00 0.00 0.00 4.11
4169 4366 5.783875 AGTAGTTTGGAAGTGTAGTATGGGT 59.216 40.000 0.00 0.00 0.00 4.51
4171 4368 8.064336 AGTAGTAGTTTGGAAGTGTAGTATGG 57.936 38.462 0.00 0.00 0.00 2.74
4173 4370 9.972106 AGTAGTAGTAGTTTGGAAGTGTAGTAT 57.028 33.333 0.00 0.00 0.00 2.12
4174 4371 9.442047 GAGTAGTAGTAGTTTGGAAGTGTAGTA 57.558 37.037 0.00 0.00 0.00 1.82
4175 4372 7.392953 GGAGTAGTAGTAGTTTGGAAGTGTAGT 59.607 40.741 0.00 0.00 0.00 2.73
4176 4373 7.148103 GGGAGTAGTAGTAGTTTGGAAGTGTAG 60.148 44.444 0.00 0.00 0.00 2.74
4180 4377 5.901598 AGGGAGTAGTAGTAGTTTGGAAGT 58.098 41.667 0.00 0.00 0.00 3.01
4193 4390 2.905415 TTGGAACGGAGGGAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
4194 4391 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
4195 4392 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
4196 4393 5.677567 GAATAATTTGGAACGGAGGGAGTA 58.322 41.667 0.00 0.00 0.00 2.59
4197 4394 4.524053 GAATAATTTGGAACGGAGGGAGT 58.476 43.478 0.00 0.00 0.00 3.85
4198 4395 3.560068 CGAATAATTTGGAACGGAGGGAG 59.440 47.826 0.00 0.00 0.00 4.30
4199 4396 3.054948 ACGAATAATTTGGAACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
4200 4397 3.275999 ACGAATAATTTGGAACGGAGGG 58.724 45.455 0.00 0.00 0.00 4.30
4201 4398 3.000925 CGACGAATAATTTGGAACGGAGG 59.999 47.826 0.00 0.00 0.00 4.30
4202 4399 3.543460 GCGACGAATAATTTGGAACGGAG 60.543 47.826 0.00 0.00 0.00 4.63
4203 4400 2.349275 GCGACGAATAATTTGGAACGGA 59.651 45.455 0.00 0.00 0.00 4.69
4204 4401 2.094575 TGCGACGAATAATTTGGAACGG 59.905 45.455 0.00 0.00 0.00 4.44
4205 4402 3.061563 TCTGCGACGAATAATTTGGAACG 59.938 43.478 0.00 0.00 0.00 3.95
4206 4403 4.593597 TCTGCGACGAATAATTTGGAAC 57.406 40.909 0.00 0.00 0.00 3.62
4207 4404 5.614923 TTTCTGCGACGAATAATTTGGAA 57.385 34.783 0.00 0.00 0.00 3.53
4208 4405 5.448496 CCATTTCTGCGACGAATAATTTGGA 60.448 40.000 0.00 0.00 0.00 3.53
4209 4406 4.734854 CCATTTCTGCGACGAATAATTTGG 59.265 41.667 0.00 0.00 0.00 3.28
4210 4407 5.568482 TCCATTTCTGCGACGAATAATTTG 58.432 37.500 0.00 0.00 0.00 2.32
4211 4408 5.811399 TCCATTTCTGCGACGAATAATTT 57.189 34.783 0.00 0.00 0.00 1.82
4212 4409 7.672983 ATATCCATTTCTGCGACGAATAATT 57.327 32.000 0.00 0.00 0.00 1.40
4213 4410 8.948631 ATATATCCATTTCTGCGACGAATAAT 57.051 30.769 0.00 0.00 0.00 1.28
4214 4411 8.251026 AGATATATCCATTTCTGCGACGAATAA 58.749 33.333 9.18 0.00 0.00 1.40
4215 4412 7.772166 AGATATATCCATTTCTGCGACGAATA 58.228 34.615 9.18 0.00 0.00 1.75
4216 4413 6.634805 AGATATATCCATTTCTGCGACGAAT 58.365 36.000 9.18 0.00 0.00 3.34
4217 4414 6.025749 AGATATATCCATTTCTGCGACGAA 57.974 37.500 9.18 0.00 0.00 3.85
4218 4415 5.644977 AGATATATCCATTTCTGCGACGA 57.355 39.130 9.18 0.00 0.00 4.20
4219 4416 6.786207 TCTAGATATATCCATTTCTGCGACG 58.214 40.000 9.18 0.00 0.00 5.12
4220 4417 8.247562 AGTTCTAGATATATCCATTTCTGCGAC 58.752 37.037 9.18 0.00 0.00 5.19
4221 4418 8.354711 AGTTCTAGATATATCCATTTCTGCGA 57.645 34.615 9.18 0.00 0.00 5.10
4249 4446 9.997172 TCAGGTATGGATGTATCTAGATGTATT 57.003 33.333 15.79 0.00 0.00 1.89
4250 4447 9.639563 CTCAGGTATGGATGTATCTAGATGTAT 57.360 37.037 15.79 9.11 0.00 2.29
4251 4448 8.836735 TCTCAGGTATGGATGTATCTAGATGTA 58.163 37.037 15.79 4.44 0.00 2.29
4252 4449 7.613801 GTCTCAGGTATGGATGTATCTAGATGT 59.386 40.741 15.79 1.25 0.00 3.06
4253 4450 7.613411 TGTCTCAGGTATGGATGTATCTAGATG 59.387 40.741 15.79 0.00 0.00 2.90
4254 4451 7.703755 TGTCTCAGGTATGGATGTATCTAGAT 58.296 38.462 10.73 10.73 0.00 1.98
4255 4452 7.091533 TGTCTCAGGTATGGATGTATCTAGA 57.908 40.000 0.00 0.00 0.00 2.43
4256 4453 7.450014 ACTTGTCTCAGGTATGGATGTATCTAG 59.550 40.741 0.00 0.00 0.00 2.43
4257 4454 7.298374 ACTTGTCTCAGGTATGGATGTATCTA 58.702 38.462 0.00 0.00 0.00 1.98
4258 4455 6.139671 ACTTGTCTCAGGTATGGATGTATCT 58.860 40.000 0.00 0.00 0.00 1.98
4259 4456 6.412362 ACTTGTCTCAGGTATGGATGTATC 57.588 41.667 0.00 0.00 0.00 2.24
4260 4457 7.914427 TTACTTGTCTCAGGTATGGATGTAT 57.086 36.000 0.00 0.00 0.00 2.29
4261 4458 7.914427 ATTACTTGTCTCAGGTATGGATGTA 57.086 36.000 0.00 0.00 0.00 2.29
4262 4459 6.814954 ATTACTTGTCTCAGGTATGGATGT 57.185 37.500 0.00 0.00 0.00 3.06
4263 4460 6.422100 CGAATTACTTGTCTCAGGTATGGATG 59.578 42.308 0.00 0.00 0.00 3.51
4264 4461 6.463049 CCGAATTACTTGTCTCAGGTATGGAT 60.463 42.308 0.00 0.00 0.00 3.41
4265 4462 5.163447 CCGAATTACTTGTCTCAGGTATGGA 60.163 44.000 0.00 0.00 0.00 3.41
4266 4463 5.050490 CCGAATTACTTGTCTCAGGTATGG 58.950 45.833 0.00 0.00 0.00 2.74
4267 4464 5.902681 TCCGAATTACTTGTCTCAGGTATG 58.097 41.667 0.00 0.00 0.00 2.39
4268 4465 6.338937 GTTCCGAATTACTTGTCTCAGGTAT 58.661 40.000 0.00 0.00 0.00 2.73
4269 4466 5.620654 CGTTCCGAATTACTTGTCTCAGGTA 60.621 44.000 0.00 0.00 0.00 3.08
4270 4467 4.566987 GTTCCGAATTACTTGTCTCAGGT 58.433 43.478 0.00 0.00 0.00 4.00
4271 4468 3.612860 CGTTCCGAATTACTTGTCTCAGG 59.387 47.826 0.00 0.00 0.00 3.86
4272 4469 3.612860 CCGTTCCGAATTACTTGTCTCAG 59.387 47.826 0.00 0.00 0.00 3.35
4273 4470 3.256383 TCCGTTCCGAATTACTTGTCTCA 59.744 43.478 0.00 0.00 0.00 3.27
4274 4471 3.841643 TCCGTTCCGAATTACTTGTCTC 58.158 45.455 0.00 0.00 0.00 3.36
4275 4472 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
4276 4473 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4277 4474 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4278 4475 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4279 4476 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
4280 4477 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4281 4478 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4282 4479 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4283 4480 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
4284 4481 1.400737 CTACTCCCTCCGTTCCGAAT 58.599 55.000 0.00 0.00 0.00 3.34
4285 4482 0.682209 CCTACTCCCTCCGTTCCGAA 60.682 60.000 0.00 0.00 0.00 4.30
4286 4483 1.077212 CCTACTCCCTCCGTTCCGA 60.077 63.158 0.00 0.00 0.00 4.55
4287 4484 1.379576 ACCTACTCCCTCCGTTCCG 60.380 63.158 0.00 0.00 0.00 4.30
4288 4485 0.614134 ACACCTACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 0.00 3.62
4289 4486 0.816373 GACACCTACTCCCTCCGTTC 59.184 60.000 0.00 0.00 0.00 3.95
4290 4487 0.113776 TGACACCTACTCCCTCCGTT 59.886 55.000 0.00 0.00 0.00 4.44
4291 4488 0.611340 GTGACACCTACTCCCTCCGT 60.611 60.000 0.00 0.00 0.00 4.69
4292 4489 0.611062 TGTGACACCTACTCCCTCCG 60.611 60.000 2.45 0.00 0.00 4.63
4293 4490 1.640917 TTGTGACACCTACTCCCTCC 58.359 55.000 2.45 0.00 0.00 4.30
4294 4491 3.983044 AATTGTGACACCTACTCCCTC 57.017 47.619 2.45 0.00 0.00 4.30
4295 4492 4.398319 CAAAATTGTGACACCTACTCCCT 58.602 43.478 2.45 0.00 0.00 4.20
4296 4493 3.057526 GCAAAATTGTGACACCTACTCCC 60.058 47.826 0.00 0.00 0.00 4.30
4297 4494 3.821033 AGCAAAATTGTGACACCTACTCC 59.179 43.478 0.00 0.00 0.00 3.85
4298 4495 4.515191 TCAGCAAAATTGTGACACCTACTC 59.485 41.667 0.00 0.00 0.00 2.59
4299 4496 4.460263 TCAGCAAAATTGTGACACCTACT 58.540 39.130 0.00 0.00 0.00 2.57
4300 4497 4.829064 TCAGCAAAATTGTGACACCTAC 57.171 40.909 0.00 0.00 0.00 3.18
4301 4498 5.129634 TCTTCAGCAAAATTGTGACACCTA 58.870 37.500 0.00 0.00 0.00 3.08
4333 4530 4.096833 GCAATAAGAATCATGTCACAGCCA 59.903 41.667 0.00 0.00 0.00 4.75
4336 4533 4.201841 TGCGCAATAAGAATCATGTCACAG 60.202 41.667 8.16 0.00 0.00 3.66
4376 4573 0.318762 AACCAGAGCGGAGACAAGAC 59.681 55.000 0.00 0.00 38.63 3.01
4382 4579 2.261671 GCGAAACCAGAGCGGAGA 59.738 61.111 0.00 0.00 38.63 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.