Multiple sequence alignment - TraesCS4A01G275000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G275000 chr4A 100.000 2171 0 0 1 2171 584518790 584516620 0.000000e+00 4010.0
1 TraesCS4A01G275000 chr4A 95.480 177 7 1 244 419 735481831 735482007 4.560000e-72 281.0
2 TraesCS4A01G275000 chr4B 83.054 1074 73 53 685 1707 27789378 27788363 0.000000e+00 874.0
3 TraesCS4A01G275000 chr4B 89.437 142 10 4 2033 2171 27787995 27787856 7.970000e-40 174.0
4 TraesCS4A01G275000 chr4B 76.730 159 16 12 8 164 27793099 27792960 3.870000e-08 69.4
5 TraesCS4A01G275000 chr4D 85.780 865 40 27 685 1500 15963092 15962262 0.000000e+00 839.0
6 TraesCS4A01G275000 chr4D 84.112 107 7 2 1869 1965 15961990 15961884 6.380000e-16 95.3
7 TraesCS4A01G275000 chr6A 96.648 179 5 1 245 422 53501686 53501508 1.630000e-76 296.0
8 TraesCS4A01G275000 chr3B 97.143 175 5 0 242 416 156649975 156649801 1.630000e-76 296.0
9 TraesCS4A01G275000 chr3B 97.674 172 4 0 247 418 816613872 816613701 1.630000e-76 296.0
10 TraesCS4A01G275000 chr3B 97.661 171 4 0 243 413 783212703 783212873 5.860000e-76 294.0
11 TraesCS4A01G275000 chr3B 94.595 185 9 1 245 429 241708366 241708549 3.530000e-73 285.0
12 TraesCS4A01G275000 chr3B 94.565 184 8 2 247 429 592610474 592610656 1.270000e-72 283.0
13 TraesCS4A01G275000 chr3B 96.970 33 1 0 175 207 352235951 352235919 3.010000e-04 56.5
14 TraesCS4A01G275000 chr2A 98.214 168 3 0 249 416 632622277 632622110 5.860000e-76 294.0
15 TraesCS4A01G275000 chr2B 97.110 173 4 1 244 416 199751163 199751334 7.580000e-75 291.0
16 TraesCS4A01G275000 chr6B 96.970 33 1 0 175 207 332412914 332412946 3.010000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G275000 chr4A 584516620 584518790 2170 True 4010.000000 4010 100.000000 1 2171 1 chr4A.!!$R1 2170
1 TraesCS4A01G275000 chr4B 27787856 27793099 5243 True 372.466667 874 83.073667 8 2171 3 chr4B.!!$R1 2163
2 TraesCS4A01G275000 chr4D 15961884 15963092 1208 True 467.150000 839 84.946000 685 1965 2 chr4D.!!$R1 1280

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 99 0.036732 TACTTTGGCCCAGCAGTGAG 59.963 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 4911 0.310854 CAAAACGGTCAGGCCTGTTC 59.689 55.0 31.58 23.69 34.56 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.909708 TTTTCCGTGATATGAGCTTATTTTTG 57.090 30.769 0.00 0.00 0.00 2.44
34 35 6.060028 TCCGTGATATGAGCTTATTTTTGC 57.940 37.500 0.00 0.00 0.00 3.68
35 36 5.588246 TCCGTGATATGAGCTTATTTTTGCA 59.412 36.000 0.00 0.00 0.00 4.08
37 38 6.415867 CCGTGATATGAGCTTATTTTTGCAAG 59.584 38.462 0.00 0.00 0.00 4.01
41 42 5.945144 ATGAGCTTATTTTTGCAAGGGAT 57.055 34.783 0.00 0.00 0.00 3.85
42 43 5.743636 TGAGCTTATTTTTGCAAGGGATT 57.256 34.783 0.00 0.00 0.00 3.01
43 44 6.112927 TGAGCTTATTTTTGCAAGGGATTT 57.887 33.333 0.00 0.00 0.00 2.17
44 45 6.532826 TGAGCTTATTTTTGCAAGGGATTTT 58.467 32.000 0.00 0.00 0.00 1.82
45 46 6.997476 TGAGCTTATTTTTGCAAGGGATTTTT 59.003 30.769 0.00 0.00 0.00 1.94
77 80 7.201794 GGAGCTTTACTTTCCACTAAAAAGTGT 60.202 37.037 10.62 0.00 44.47 3.55
78 81 8.741603 AGCTTTACTTTCCACTAAAAAGTGTA 57.258 30.769 10.62 0.00 44.47 2.90
79 82 8.618677 AGCTTTACTTTCCACTAAAAAGTGTAC 58.381 33.333 10.62 0.00 44.47 2.90
84 87 7.768240 ACTTTCCACTAAAAAGTGTACTTTGG 58.232 34.615 10.48 8.12 44.69 3.28
85 88 5.761165 TCCACTAAAAAGTGTACTTTGGC 57.239 39.130 10.48 0.00 44.69 4.52
86 89 4.581409 TCCACTAAAAAGTGTACTTTGGCC 59.419 41.667 10.48 0.00 44.69 5.36
87 90 4.261867 CCACTAAAAAGTGTACTTTGGCCC 60.262 45.833 10.48 0.00 44.69 5.80
88 91 4.339814 CACTAAAAAGTGTACTTTGGCCCA 59.660 41.667 10.48 0.00 44.69 5.36
89 92 4.583073 ACTAAAAAGTGTACTTTGGCCCAG 59.417 41.667 10.48 0.00 44.69 4.45
90 93 1.328279 AAAGTGTACTTTGGCCCAGC 58.672 50.000 9.07 0.00 43.87 4.85
91 94 0.184933 AAGTGTACTTTGGCCCAGCA 59.815 50.000 0.00 0.00 30.82 4.41
92 95 0.250901 AGTGTACTTTGGCCCAGCAG 60.251 55.000 0.00 0.00 0.00 4.24
93 96 0.537371 GTGTACTTTGGCCCAGCAGT 60.537 55.000 0.00 3.38 0.00 4.40
94 97 0.537143 TGTACTTTGGCCCAGCAGTG 60.537 55.000 0.00 0.00 0.00 3.66
95 98 0.250727 GTACTTTGGCCCAGCAGTGA 60.251 55.000 0.00 0.00 0.00 3.41
96 99 0.036732 TACTTTGGCCCAGCAGTGAG 59.963 55.000 0.00 0.00 0.00 3.51
97 100 1.228367 CTTTGGCCCAGCAGTGAGT 60.228 57.895 0.00 0.00 0.00 3.41
98 101 1.228245 TTTGGCCCAGCAGTGAGTC 60.228 57.895 0.00 0.00 0.00 3.36
99 102 1.708993 TTTGGCCCAGCAGTGAGTCT 61.709 55.000 0.00 0.00 0.00 3.24
100 103 2.116983 TTGGCCCAGCAGTGAGTCTC 62.117 60.000 0.00 0.00 0.00 3.36
107 110 2.575532 CAGCAGTGAGTCTCCCAAAAA 58.424 47.619 0.00 0.00 0.00 1.94
126 129 0.955905 AAAATAACACGCAGGCGGTT 59.044 45.000 18.63 18.87 44.69 4.44
136 139 1.732917 CAGGCGGTTGTTGCAGAAA 59.267 52.632 0.00 0.00 0.00 2.52
141 144 1.202245 GCGGTTGTTGCAGAAAACAGA 60.202 47.619 10.84 0.00 40.93 3.41
156 159 6.198966 CAGAAAACAGAAAAATTCTTCCACGG 59.801 38.462 0.00 0.00 38.11 4.94
164 167 8.699749 CAGAAAAATTCTTCCACGGAAAATAAC 58.300 33.333 0.00 0.00 38.11 1.89
166 169 9.203421 GAAAAATTCTTCCACGGAAAATAACAT 57.797 29.630 0.00 0.00 33.34 2.71
167 170 8.532977 AAAATTCTTCCACGGAAAATAACATG 57.467 30.769 0.00 0.00 33.34 3.21
168 171 4.695217 TCTTCCACGGAAAATAACATGC 57.305 40.909 0.00 0.00 33.34 4.06
171 174 5.184864 TCTTCCACGGAAAATAACATGCATT 59.815 36.000 0.00 0.00 33.34 3.56
173 176 5.406649 TCCACGGAAAATAACATGCATTTC 58.593 37.500 0.00 0.00 0.00 2.17
178 218 5.289193 CGGAAAATAACATGCATTTCACTGG 59.711 40.000 0.00 0.00 34.31 4.00
187 227 1.786579 GCATTTCACTGGCAAAACGTC 59.213 47.619 0.00 0.00 0.00 4.34
189 229 3.705604 CATTTCACTGGCAAAACGTCTT 58.294 40.909 0.00 0.00 0.00 3.01
190 230 2.842208 TTCACTGGCAAAACGTCTTG 57.158 45.000 0.00 0.00 0.00 3.02
197 237 6.205853 TCACTGGCAAAACGTCTTGTATTTAT 59.794 34.615 3.16 0.00 0.00 1.40
198 238 6.305399 CACTGGCAAAACGTCTTGTATTTATG 59.695 38.462 3.16 0.00 0.00 1.90
206 246 7.596749 AACGTCTTGTATTTATGAACAGAGG 57.403 36.000 0.00 0.00 0.00 3.69
209 249 7.974501 ACGTCTTGTATTTATGAACAGAGGTAG 59.025 37.037 0.00 0.00 0.00 3.18
258 298 7.992754 TTTACGACTATTATCTACTCCCTCC 57.007 40.000 0.00 0.00 0.00 4.30
259 299 4.577875 ACGACTATTATCTACTCCCTCCG 58.422 47.826 0.00 0.00 0.00 4.63
260 300 4.041444 ACGACTATTATCTACTCCCTCCGT 59.959 45.833 0.00 0.00 0.00 4.69
261 301 5.002516 CGACTATTATCTACTCCCTCCGTT 58.997 45.833 0.00 0.00 0.00 4.44
262 302 5.122082 CGACTATTATCTACTCCCTCCGTTC 59.878 48.000 0.00 0.00 0.00 3.95
263 303 5.323581 ACTATTATCTACTCCCTCCGTTCC 58.676 45.833 0.00 0.00 0.00 3.62
264 304 3.967467 TTATCTACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
265 305 5.595814 ATTATCTACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
266 306 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
267 307 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
268 308 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
269 309 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
270 310 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
271 311 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
272 312 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
273 313 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
274 314 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
275 315 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
276 316 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
277 317 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
278 318 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
279 319 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
280 320 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
281 321 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
282 322 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
283 323 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
284 324 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
294 334 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
295 335 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
296 336 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
297 337 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
298 338 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
299 339 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
300 340 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
301 341 7.953158 TTCTAGAGATTTCAACAAGTGACTG 57.047 36.000 0.00 0.00 35.39 3.51
302 342 5.928839 TCTAGAGATTTCAACAAGTGACTGC 59.071 40.000 0.00 0.00 35.39 4.40
303 343 4.454678 AGAGATTTCAACAAGTGACTGCA 58.545 39.130 0.00 0.00 35.39 4.41
304 344 5.068636 AGAGATTTCAACAAGTGACTGCAT 58.931 37.500 0.00 0.00 35.39 3.96
305 345 6.233434 AGAGATTTCAACAAGTGACTGCATA 58.767 36.000 0.00 0.00 35.39 3.14
306 346 6.148480 AGAGATTTCAACAAGTGACTGCATAC 59.852 38.462 0.00 0.00 35.39 2.39
307 347 4.466567 TTTCAACAAGTGACTGCATACG 57.533 40.909 0.00 0.00 35.39 3.06
308 348 2.412870 TCAACAAGTGACTGCATACGG 58.587 47.619 0.00 0.00 0.00 4.02
309 349 1.135972 CAACAAGTGACTGCATACGGC 60.136 52.381 0.00 0.00 45.13 5.68
319 359 2.858729 GCATACGGCGCAAAATGAG 58.141 52.632 10.83 0.00 0.00 2.90
320 360 0.098728 GCATACGGCGCAAAATGAGT 59.901 50.000 10.83 0.00 0.00 3.41
321 361 1.813896 CATACGGCGCAAAATGAGTG 58.186 50.000 10.83 0.00 0.00 3.51
322 362 1.396648 CATACGGCGCAAAATGAGTGA 59.603 47.619 10.83 0.00 0.00 3.41
323 363 1.514003 TACGGCGCAAAATGAGTGAA 58.486 45.000 10.83 0.00 0.00 3.18
324 364 0.881118 ACGGCGCAAAATGAGTGAAT 59.119 45.000 10.83 0.00 0.00 2.57
325 365 1.135689 ACGGCGCAAAATGAGTGAATC 60.136 47.619 10.83 0.00 0.00 2.52
326 366 1.131126 CGGCGCAAAATGAGTGAATCT 59.869 47.619 10.83 0.00 0.00 2.40
327 367 2.351418 CGGCGCAAAATGAGTGAATCTA 59.649 45.455 10.83 0.00 0.00 1.98
328 368 3.685058 GGCGCAAAATGAGTGAATCTAC 58.315 45.455 10.83 0.00 0.00 2.59
329 369 3.126858 GGCGCAAAATGAGTGAATCTACA 59.873 43.478 10.83 0.00 0.00 2.74
330 370 4.091424 GCGCAAAATGAGTGAATCTACAC 58.909 43.478 0.30 0.00 40.60 2.90
354 394 9.669353 CACTTTAAAATATGTCTGCATACATCC 57.331 33.333 19.80 0.00 40.05 3.51
355 395 8.559536 ACTTTAAAATATGTCTGCATACATCCG 58.440 33.333 19.80 5.19 40.05 4.18
356 396 8.445275 TTTAAAATATGTCTGCATACATCCGT 57.555 30.769 19.80 6.45 40.05 4.69
357 397 9.549078 TTTAAAATATGTCTGCATACATCCGTA 57.451 29.630 19.80 4.61 40.05 4.02
358 398 9.719355 TTAAAATATGTCTGCATACATCCGTAT 57.281 29.630 19.80 6.68 40.05 3.06
368 408 4.944048 CATACATCCGTATGTTGAGTCCA 58.056 43.478 0.00 0.00 46.70 4.02
369 409 5.541845 CATACATCCGTATGTTGAGTCCAT 58.458 41.667 0.00 0.00 46.70 3.41
370 410 4.487714 ACATCCGTATGTTGAGTCCATT 57.512 40.909 0.00 0.00 44.07 3.16
371 411 4.843728 ACATCCGTATGTTGAGTCCATTT 58.156 39.130 0.00 0.00 44.07 2.32
372 412 4.635765 ACATCCGTATGTTGAGTCCATTTG 59.364 41.667 0.00 0.00 44.07 2.32
373 413 4.545208 TCCGTATGTTGAGTCCATTTGA 57.455 40.909 0.00 0.00 0.00 2.69
374 414 4.900684 TCCGTATGTTGAGTCCATTTGAA 58.099 39.130 0.00 0.00 0.00 2.69
375 415 5.309638 TCCGTATGTTGAGTCCATTTGAAA 58.690 37.500 0.00 0.00 0.00 2.69
376 416 5.943416 TCCGTATGTTGAGTCCATTTGAAAT 59.057 36.000 0.00 0.00 0.00 2.17
377 417 6.029607 CCGTATGTTGAGTCCATTTGAAATG 58.970 40.000 10.84 10.84 0.00 2.32
378 418 5.512788 CGTATGTTGAGTCCATTTGAAATGC 59.487 40.000 12.26 0.23 0.00 3.56
379 419 4.255833 TGTTGAGTCCATTTGAAATGCC 57.744 40.909 12.26 5.23 0.00 4.40
380 420 3.896888 TGTTGAGTCCATTTGAAATGCCT 59.103 39.130 12.26 9.70 0.00 4.75
381 421 5.076182 TGTTGAGTCCATTTGAAATGCCTA 58.924 37.500 12.26 0.00 0.00 3.93
382 422 5.183713 TGTTGAGTCCATTTGAAATGCCTAG 59.816 40.000 12.26 0.00 0.00 3.02
383 423 5.178096 TGAGTCCATTTGAAATGCCTAGA 57.822 39.130 12.26 1.83 0.00 2.43
384 424 5.569355 TGAGTCCATTTGAAATGCCTAGAA 58.431 37.500 12.26 0.00 0.00 2.10
385 425 6.009589 TGAGTCCATTTGAAATGCCTAGAAA 58.990 36.000 12.26 0.00 0.00 2.52
386 426 6.151648 TGAGTCCATTTGAAATGCCTAGAAAG 59.848 38.462 12.26 0.00 0.00 2.62
387 427 6.248433 AGTCCATTTGAAATGCCTAGAAAGA 58.752 36.000 12.26 0.00 0.00 2.52
388 428 6.151817 AGTCCATTTGAAATGCCTAGAAAGAC 59.848 38.462 12.26 10.86 0.00 3.01
389 429 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
390 430 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
391 431 6.810182 CCATTTGAAATGCCTAGAAAGACAAG 59.190 38.462 12.26 0.00 0.00 3.16
392 432 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
393 433 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
394 434 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
395 435 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
396 436 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
397 437 9.077885 TGAAATGCCTAGAAAGACAAGTATTTT 57.922 29.630 0.00 0.00 0.00 1.82
398 438 9.346725 GAAATGCCTAGAAAGACAAGTATTTTG 57.653 33.333 0.00 0.00 0.00 2.44
399 439 6.817765 TGCCTAGAAAGACAAGTATTTTGG 57.182 37.500 0.00 0.48 0.00 3.28
400 440 6.539173 TGCCTAGAAAGACAAGTATTTTGGA 58.461 36.000 0.00 0.00 0.00 3.53
401 441 7.001674 TGCCTAGAAAGACAAGTATTTTGGAA 58.998 34.615 0.00 0.96 0.00 3.53
402 442 7.040686 TGCCTAGAAAGACAAGTATTTTGGAAC 60.041 37.037 0.00 0.00 0.00 3.62
403 443 7.519002 CCTAGAAAGACAAGTATTTTGGAACG 58.481 38.462 0.00 0.00 0.00 3.95
404 444 6.313744 AGAAAGACAAGTATTTTGGAACGG 57.686 37.500 0.00 0.00 0.00 4.44
405 445 6.059484 AGAAAGACAAGTATTTTGGAACGGA 58.941 36.000 0.00 0.00 0.00 4.69
406 446 5.941948 AAGACAAGTATTTTGGAACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
407 447 4.324267 AGACAAGTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
408 448 3.418047 ACAAGTATTTTGGAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
409 449 3.073356 ACAAGTATTTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
410 450 3.629142 AGTATTTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
411 451 2.910977 AGTATTTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
412 452 4.098894 AGTATTTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
413 453 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
431 471 7.607991 AGGGAGTAGTACAAATGAATTTCACTG 59.392 37.037 0.15 5.15 0.00 3.66
434 474 8.165239 AGTAGTACAAATGAATTTCACTGCAA 57.835 30.769 0.15 0.00 32.13 4.08
435 475 8.629158 AGTAGTACAAATGAATTTCACTGCAAA 58.371 29.630 0.15 0.00 32.13 3.68
436 476 9.410556 GTAGTACAAATGAATTTCACTGCAAAT 57.589 29.630 0.15 0.00 31.10 2.32
437 477 8.891671 AGTACAAATGAATTTCACTGCAAATT 57.108 26.923 0.15 0.00 38.43 1.82
438 478 8.767085 AGTACAAATGAATTTCACTGCAAATTG 58.233 29.630 0.15 0.00 36.33 2.32
439 479 7.789273 ACAAATGAATTTCACTGCAAATTGA 57.211 28.000 0.15 0.00 36.33 2.57
442 482 9.112789 CAAATGAATTTCACTGCAAATTGAATG 57.887 29.630 0.15 0.00 36.33 2.67
443 483 7.972832 ATGAATTTCACTGCAAATTGAATGT 57.027 28.000 0.15 0.00 36.33 2.71
444 484 7.410800 TGAATTTCACTGCAAATTGAATGTC 57.589 32.000 0.00 7.12 36.33 3.06
445 485 6.985059 TGAATTTCACTGCAAATTGAATGTCA 59.015 30.769 0.00 8.97 36.33 3.58
446 486 7.170151 TGAATTTCACTGCAAATTGAATGTCAG 59.830 33.333 0.00 0.00 36.33 3.51
447 487 5.771153 TTCACTGCAAATTGAATGTCAGA 57.229 34.783 0.00 0.00 0.00 3.27
448 488 5.771153 TCACTGCAAATTGAATGTCAGAA 57.229 34.783 0.00 0.00 0.00 3.02
453 493 7.796660 CACTGCAAATTGAATGTCAGAATTTTG 59.203 33.333 0.00 0.00 28.93 2.44
458 498 8.717821 CAAATTGAATGTCAGAATTTTGAGCAT 58.282 29.630 0.00 4.05 28.93 3.79
462 502 2.892215 TGTCAGAATTTTGAGCATGGCA 59.108 40.909 0.00 0.00 0.00 4.92
463 503 3.057104 TGTCAGAATTTTGAGCATGGCAG 60.057 43.478 0.00 0.00 0.00 4.85
464 504 3.192001 GTCAGAATTTTGAGCATGGCAGA 59.808 43.478 0.00 0.00 0.00 4.26
465 505 4.021229 TCAGAATTTTGAGCATGGCAGAT 58.979 39.130 0.00 0.00 0.00 2.90
466 506 4.097437 TCAGAATTTTGAGCATGGCAGATC 59.903 41.667 0.00 0.00 0.00 2.75
468 508 4.464951 AGAATTTTGAGCATGGCAGATCAA 59.535 37.500 11.68 11.68 41.63 2.57
470 510 3.581024 TTTGAGCATGGCAGATCAAAC 57.419 42.857 19.22 0.00 45.63 2.93
471 511 2.502142 TGAGCATGGCAGATCAAACT 57.498 45.000 0.00 0.00 29.85 2.66
476 516 4.563061 AGCATGGCAGATCAAACTTTTTC 58.437 39.130 0.00 0.00 0.00 2.29
482 522 6.218019 TGGCAGATCAAACTTTTTCTTGATG 58.782 36.000 2.20 0.00 41.29 3.07
483 523 6.040729 TGGCAGATCAAACTTTTTCTTGATGA 59.959 34.615 2.20 0.00 41.29 2.92
506 551 7.747888 TGAATTATGTTGTTACGAGAATGGTG 58.252 34.615 0.00 0.00 0.00 4.17
517 563 8.717821 TGTTACGAGAATGGTGATTTTCTTTAG 58.282 33.333 0.00 0.00 32.46 1.85
523 569 2.747446 TGGTGATTTTCTTTAGCGAGCC 59.253 45.455 0.00 0.00 0.00 4.70
531 577 2.688507 TCTTTAGCGAGCCTGACAAAG 58.311 47.619 0.00 0.00 0.00 2.77
533 579 2.831685 TTAGCGAGCCTGACAAAGAA 57.168 45.000 0.00 0.00 0.00 2.52
534 580 3.334583 TTAGCGAGCCTGACAAAGAAT 57.665 42.857 0.00 0.00 0.00 2.40
536 582 1.808945 AGCGAGCCTGACAAAGAATTG 59.191 47.619 0.00 0.00 42.46 2.32
537 583 1.730446 GCGAGCCTGACAAAGAATTGC 60.730 52.381 0.00 0.00 40.34 3.56
553 599 0.978151 TTGCCAGAATTTGCCATGCT 59.022 45.000 0.00 0.00 0.00 3.79
554 600 0.978151 TGCCAGAATTTGCCATGCTT 59.022 45.000 0.00 0.00 0.00 3.91
557 603 1.365699 CAGAATTTGCCATGCTTGCC 58.634 50.000 0.00 0.00 0.00 4.52
560 606 2.152830 GAATTTGCCATGCTTGCCAAA 58.847 42.857 10.56 10.56 0.00 3.28
561 607 1.816074 ATTTGCCATGCTTGCCAAAG 58.184 45.000 13.12 0.00 36.41 2.77
563 609 0.757512 TTGCCATGCTTGCCAAAGAA 59.242 45.000 0.00 0.00 35.19 2.52
564 610 0.757512 TGCCATGCTTGCCAAAGAAA 59.242 45.000 0.00 0.00 35.19 2.52
565 611 1.140452 TGCCATGCTTGCCAAAGAAAA 59.860 42.857 0.00 0.00 35.19 2.29
566 612 1.532437 GCCATGCTTGCCAAAGAAAAC 59.468 47.619 0.00 0.00 35.19 2.43
576 622 5.365403 TGCCAAAGAAAACTACCATAACG 57.635 39.130 0.00 0.00 0.00 3.18
603 3381 9.474920 TTTGATTTGTCATGGTTAAAATCTGAC 57.525 29.630 16.78 0.00 38.97 3.51
607 3385 5.996219 TGTCATGGTTAAAATCTGACGTTG 58.004 37.500 0.00 0.00 39.20 4.10
618 3396 0.458543 CTGACGTTGCCGCTACAGAT 60.459 55.000 5.80 0.00 36.13 2.90
634 3745 3.262420 ACAGATTTGGTAGACATCACGC 58.738 45.455 0.00 0.00 0.00 5.34
654 3765 0.672711 GGTCTACGGGAAAGTGTGCC 60.673 60.000 0.00 0.00 0.00 5.01
701 3933 1.212616 GACATCCGAAGATTCAGCGG 58.787 55.000 10.01 10.01 46.08 5.52
702 3934 0.179073 ACATCCGAAGATTCAGCGGG 60.179 55.000 14.58 5.19 44.87 6.13
761 3994 1.807142 GGACTCGCCTTTCTTTCCTTG 59.193 52.381 0.00 0.00 0.00 3.61
811 4044 0.526211 GAATTCCCCGCACCAAAGAC 59.474 55.000 0.00 0.00 0.00 3.01
828 4061 3.530104 CTACGCGTCGCCGTCAAC 61.530 66.667 18.63 0.00 42.20 3.18
923 4169 0.888619 GGCACCTTTAGTTTCAGGGC 59.111 55.000 0.00 0.00 34.02 5.19
924 4170 1.616159 GCACCTTTAGTTTCAGGGCA 58.384 50.000 0.00 0.00 34.02 5.36
925 4171 1.269723 GCACCTTTAGTTTCAGGGCAC 59.730 52.381 0.00 0.00 34.02 5.01
926 4172 2.582052 CACCTTTAGTTTCAGGGCACA 58.418 47.619 0.00 0.00 34.02 4.57
927 4173 2.554032 CACCTTTAGTTTCAGGGCACAG 59.446 50.000 0.00 0.00 34.02 3.66
928 4174 1.541588 CCTTTAGTTTCAGGGCACAGC 59.458 52.381 0.00 0.00 0.00 4.40
1213 4489 2.282180 TTGCTTCGGTTGGCTCCC 60.282 61.111 0.00 0.00 0.00 4.30
1226 4502 1.410850 GGCTCCCGATCCATCCTTCA 61.411 60.000 0.00 0.00 0.00 3.02
1227 4503 0.034616 GCTCCCGATCCATCCTTCAG 59.965 60.000 0.00 0.00 0.00 3.02
1252 4532 1.436600 ACAGCAGTGCTTCATCTTCG 58.563 50.000 16.89 3.90 36.40 3.79
1304 4605 1.702401 TGCATGTCTGGTTGGTTAGGA 59.298 47.619 0.00 0.00 0.00 2.94
1307 4608 3.866651 CATGTCTGGTTGGTTAGGAGAG 58.133 50.000 0.00 0.00 0.00 3.20
1310 4611 3.769844 TGTCTGGTTGGTTAGGAGAGATC 59.230 47.826 0.00 0.00 0.00 2.75
1323 4624 4.728772 AGGAGAGATCTAGTCTGTGATGG 58.271 47.826 0.00 0.00 37.29 3.51
1353 4656 2.313234 CGAGCTGCAAATTGTGTGAAG 58.687 47.619 1.02 0.00 0.00 3.02
1359 4662 1.930371 GCAAATTGTGTGAAGTCGGCC 60.930 52.381 0.00 0.00 0.00 6.13
1366 4669 2.550606 TGTGTGAAGTCGGCCAATTAAC 59.449 45.455 2.24 0.00 0.00 2.01
1371 4674 3.252215 TGAAGTCGGCCAATTAACAAGTG 59.748 43.478 2.24 0.00 0.00 3.16
1407 4715 2.408271 TGAGCCCTAGTTGCAGATTG 57.592 50.000 4.53 0.00 0.00 2.67
1421 4730 2.030946 GCAGATTGTGTGGATTACTCGC 59.969 50.000 0.00 0.00 0.00 5.03
1437 4746 1.581147 CGCCGCTTTCTTCGATTGC 60.581 57.895 0.00 0.00 0.00 3.56
1503 4815 3.074390 TGGCTCCTCTTCTTGAAAATCCA 59.926 43.478 0.00 0.00 0.00 3.41
1507 4819 5.570439 GCTCCTCTTCTTGAAAATCCAGAGA 60.570 44.000 0.00 0.00 29.28 3.10
1539 4853 8.118976 TCTTTTCTTTCTCCTAGTTCGTGATA 57.881 34.615 0.00 0.00 0.00 2.15
1545 4859 6.829229 TTCTCCTAGTTCGTGATAGACAAA 57.171 37.500 0.00 0.00 0.00 2.83
1569 4888 8.472007 AACATTAATTAGTGTTCACTCCCAAA 57.528 30.769 17.81 0.00 31.63 3.28
1599 4918 8.966069 AGAAAATTACTATAAGAGGAACAGGC 57.034 34.615 0.00 0.00 27.58 4.85
1600 4919 7.993758 AGAAAATTACTATAAGAGGAACAGGCC 59.006 37.037 0.00 0.00 27.58 5.19
1605 4924 1.276622 TAAGAGGAACAGGCCTGACC 58.723 55.000 39.19 34.39 38.73 4.02
1673 4992 9.877137 GGGATTAAATTGTGAAATTGTTTGTTC 57.123 29.630 0.00 0.00 0.00 3.18
1697 5025 3.884895 TCGAAGCAACCATATTCACCAT 58.115 40.909 0.00 0.00 0.00 3.55
1707 5035 3.424703 CATATTCACCATAAGCCCCCTG 58.575 50.000 0.00 0.00 0.00 4.45
1710 5038 0.044092 TCACCATAAGCCCCCTGAGA 59.956 55.000 0.00 0.00 0.00 3.27
1715 5043 2.444766 CCATAAGCCCCCTGAGATCTTT 59.555 50.000 0.00 0.00 0.00 2.52
1722 5050 3.633986 GCCCCCTGAGATCTTTTACAATG 59.366 47.826 0.00 0.00 0.00 2.82
1723 5051 3.633986 CCCCCTGAGATCTTTTACAATGC 59.366 47.826 0.00 0.00 0.00 3.56
1745 5086 5.477984 TGCAAGGTGCTCAGAGAAATAAATT 59.522 36.000 0.00 0.00 45.31 1.82
1767 5108 3.293337 AGGTTTTTCTTAAGCACCGGTT 58.707 40.909 2.97 0.00 32.32 4.44
1774 5115 4.722361 TCTTAAGCACCGGTTTTTGTTT 57.278 36.364 2.97 0.00 0.00 2.83
1775 5116 4.425520 TCTTAAGCACCGGTTTTTGTTTG 58.574 39.130 2.97 0.00 0.00 2.93
1780 5121 3.131400 AGCACCGGTTTTTGTTTGTACAT 59.869 39.130 2.97 0.00 33.44 2.29
1781 5122 3.244111 GCACCGGTTTTTGTTTGTACATG 59.756 43.478 2.97 0.00 33.44 3.21
1787 5128 6.294286 CCGGTTTTTGTTTGTACATGGTAGAT 60.294 38.462 0.00 0.00 33.44 1.98
1789 5130 7.430441 GGTTTTTGTTTGTACATGGTAGATGT 58.570 34.615 0.00 0.00 33.44 3.06
1801 5142 7.568199 ACATGGTAGATGTTTATTTAGGCAC 57.432 36.000 0.00 0.00 0.00 5.01
1804 5145 4.825634 GGTAGATGTTTATTTAGGCACCCC 59.174 45.833 0.00 0.00 0.00 4.95
1805 5146 4.881157 AGATGTTTATTTAGGCACCCCT 57.119 40.909 0.00 0.00 45.61 4.79
1808 5149 4.668138 TGTTTATTTAGGCACCCCTTCT 57.332 40.909 0.00 0.00 42.87 2.85
1809 5150 4.340617 TGTTTATTTAGGCACCCCTTCTG 58.659 43.478 0.00 0.00 42.87 3.02
1810 5151 4.202631 TGTTTATTTAGGCACCCCTTCTGT 60.203 41.667 0.00 0.00 42.87 3.41
1811 5152 5.014333 TGTTTATTTAGGCACCCCTTCTGTA 59.986 40.000 0.00 0.00 42.87 2.74
1813 5154 4.668138 ATTTAGGCACCCCTTCTGTAAA 57.332 40.909 0.00 0.00 42.87 2.01
1814 5155 3.713826 TTAGGCACCCCTTCTGTAAAG 57.286 47.619 0.00 0.00 42.87 1.85
1815 5156 1.742308 AGGCACCCCTTCTGTAAAGA 58.258 50.000 0.00 0.00 38.74 2.52
1816 5157 2.279173 AGGCACCCCTTCTGTAAAGAT 58.721 47.619 0.00 0.00 38.74 2.40
1817 5158 3.460825 AGGCACCCCTTCTGTAAAGATA 58.539 45.455 0.00 0.00 38.74 1.98
1859 5200 8.770850 TTTTTACTAAACGTCTTGCATTGTAC 57.229 30.769 0.00 0.00 0.00 2.90
1860 5201 7.479897 TTTACTAAACGTCTTGCATTGTACA 57.520 32.000 0.00 0.00 0.00 2.90
1861 5202 5.994887 ACTAAACGTCTTGCATTGTACAA 57.005 34.783 11.41 11.41 0.00 2.41
1862 5203 5.985781 ACTAAACGTCTTGCATTGTACAAG 58.014 37.500 14.65 7.46 44.76 3.16
1863 5204 3.896648 AACGTCTTGCATTGTACAAGG 57.103 42.857 15.70 15.70 43.79 3.61
1864 5205 2.846193 ACGTCTTGCATTGTACAAGGT 58.154 42.857 20.31 0.00 43.79 3.50
1865 5206 2.806244 ACGTCTTGCATTGTACAAGGTC 59.194 45.455 20.31 13.34 43.79 3.85
1866 5207 3.067106 CGTCTTGCATTGTACAAGGTCT 58.933 45.455 20.31 0.00 43.79 3.85
1913 5264 4.217510 TGGGAATGGCTTTATTGAGATGG 58.782 43.478 0.00 0.00 0.00 3.51
1915 5266 4.279420 GGGAATGGCTTTATTGAGATGGAC 59.721 45.833 0.00 0.00 0.00 4.02
1927 5278 2.000447 GAGATGGACTTGCAACGGTAC 59.000 52.381 0.00 0.00 0.00 3.34
1965 5366 2.288579 ACCAGTAACTTCGTTCGATGCA 60.289 45.455 7.76 0.00 0.00 3.96
1966 5367 2.930040 CCAGTAACTTCGTTCGATGCAT 59.070 45.455 0.00 0.00 0.00 3.96
1967 5368 3.370978 CCAGTAACTTCGTTCGATGCATT 59.629 43.478 0.00 0.00 0.00 3.56
1968 5369 4.142902 CCAGTAACTTCGTTCGATGCATTT 60.143 41.667 0.00 0.00 0.00 2.32
1969 5370 5.382303 CAGTAACTTCGTTCGATGCATTTT 58.618 37.500 0.00 0.00 0.00 1.82
1970 5371 5.281376 CAGTAACTTCGTTCGATGCATTTTG 59.719 40.000 0.00 0.00 0.00 2.44
1971 5372 3.896648 ACTTCGTTCGATGCATTTTGT 57.103 38.095 0.00 0.00 0.00 2.83
1972 5373 4.223320 ACTTCGTTCGATGCATTTTGTT 57.777 36.364 0.00 0.00 0.00 2.83
1973 5374 4.606961 ACTTCGTTCGATGCATTTTGTTT 58.393 34.783 0.00 0.00 0.00 2.83
1974 5375 4.675114 ACTTCGTTCGATGCATTTTGTTTC 59.325 37.500 0.00 0.00 0.00 2.78
1975 5376 4.216366 TCGTTCGATGCATTTTGTTTCA 57.784 36.364 0.00 0.00 0.00 2.69
1976 5377 4.793071 TCGTTCGATGCATTTTGTTTCAT 58.207 34.783 0.00 0.00 0.00 2.57
1977 5378 5.218885 TCGTTCGATGCATTTTGTTTCATT 58.781 33.333 0.00 0.00 0.00 2.57
1978 5379 5.341993 TCGTTCGATGCATTTTGTTTCATTC 59.658 36.000 0.00 0.00 0.00 2.67
1979 5380 5.343058 CGTTCGATGCATTTTGTTTCATTCT 59.657 36.000 0.00 0.00 0.00 2.40
1980 5381 6.522855 CGTTCGATGCATTTTGTTTCATTCTA 59.477 34.615 0.00 0.00 0.00 2.10
1981 5382 7.253092 CGTTCGATGCATTTTGTTTCATTCTAG 60.253 37.037 0.00 0.00 0.00 2.43
1982 5383 7.144722 TCGATGCATTTTGTTTCATTCTAGT 57.855 32.000 0.00 0.00 0.00 2.57
1983 5384 8.262715 TCGATGCATTTTGTTTCATTCTAGTA 57.737 30.769 0.00 0.00 0.00 1.82
1984 5385 8.892723 TCGATGCATTTTGTTTCATTCTAGTAT 58.107 29.630 0.00 0.00 0.00 2.12
1985 5386 8.950961 CGATGCATTTTGTTTCATTCTAGTATG 58.049 33.333 0.00 3.05 0.00 2.39
2024 5425 4.048241 GGGAACCGTCAATTTTGTTTCA 57.952 40.909 0.00 0.00 40.86 2.69
2026 5427 5.053811 GGGAACCGTCAATTTTGTTTCATT 58.946 37.500 0.00 0.00 40.86 2.57
2027 5428 5.176774 GGGAACCGTCAATTTTGTTTCATTC 59.823 40.000 0.00 0.00 40.86 2.67
2028 5429 5.983118 GGAACCGTCAATTTTGTTTCATTCT 59.017 36.000 0.00 0.00 0.00 2.40
2029 5430 7.142680 GGAACCGTCAATTTTGTTTCATTCTA 58.857 34.615 0.00 0.00 0.00 2.10
2030 5431 7.326063 GGAACCGTCAATTTTGTTTCATTCTAG 59.674 37.037 0.00 0.00 0.00 2.43
2031 5432 7.272037 ACCGTCAATTTTGTTTCATTCTAGT 57.728 32.000 0.00 0.00 0.00 2.57
2061 5635 3.953712 TCTCTTTCGGTCTTGCATACA 57.046 42.857 0.00 0.00 0.00 2.29
2077 5651 8.149647 TCTTGCATACATTTTTGGATTCTTGTT 58.850 29.630 0.00 0.00 0.00 2.83
2079 5653 7.440198 TGCATACATTTTTGGATTCTTGTTGA 58.560 30.769 0.00 0.00 0.00 3.18
2080 5654 7.599621 TGCATACATTTTTGGATTCTTGTTGAG 59.400 33.333 0.00 0.00 0.00 3.02
2119 5696 7.701809 AAATTTCTCGCGTTTGGAATTTTAA 57.298 28.000 5.77 0.00 0.00 1.52
2120 5697 7.883229 AATTTCTCGCGTTTGGAATTTTAAT 57.117 28.000 5.77 0.00 0.00 1.40
2121 5698 6.683090 TTTCTCGCGTTTGGAATTTTAATG 57.317 33.333 5.77 0.00 0.00 1.90
2122 5699 5.365403 TCTCGCGTTTGGAATTTTAATGT 57.635 34.783 5.77 0.00 0.00 2.71
2127 5704 5.315195 GCGTTTGGAATTTTAATGTGCATG 58.685 37.500 0.00 0.00 0.00 4.06
2138 5715 1.167851 ATGTGCATGTCTTGTTCCCG 58.832 50.000 0.00 0.00 0.00 5.14
2144 5721 1.269448 CATGTCTTGTTCCCGGGTTTG 59.731 52.381 22.86 7.85 0.00 2.93
2147 5724 1.335810 GTCTTGTTCCCGGGTTTGTTC 59.664 52.381 22.86 6.40 0.00 3.18
2151 5728 1.064611 TGTTCCCGGGTTTGTTCTCAA 60.065 47.619 22.86 0.00 0.00 3.02
2154 5731 2.303175 TCCCGGGTTTGTTCTCAAAAG 58.697 47.619 22.86 0.00 43.78 2.27
2163 5740 7.269316 GGGTTTGTTCTCAAAAGAAAATACCA 58.731 34.615 15.44 0.00 45.62 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.541845 CTCATATCACGGAAAATGCCTAGA 58.458 41.667 0.00 0.00 0.00 2.43
1 2 4.153117 GCTCATATCACGGAAAATGCCTAG 59.847 45.833 0.00 0.00 0.00 3.02
2 3 4.065088 GCTCATATCACGGAAAATGCCTA 58.935 43.478 0.00 0.00 0.00 3.93
3 4 2.880890 GCTCATATCACGGAAAATGCCT 59.119 45.455 0.00 0.00 0.00 4.75
4 5 2.880890 AGCTCATATCACGGAAAATGCC 59.119 45.455 0.00 0.00 0.00 4.40
5 6 4.558538 AAGCTCATATCACGGAAAATGC 57.441 40.909 0.00 0.00 0.00 3.56
6 7 9.520204 AAAAATAAGCTCATATCACGGAAAATG 57.480 29.630 0.00 0.00 0.00 2.32
12 13 5.820131 TGCAAAAATAAGCTCATATCACGG 58.180 37.500 0.00 0.00 0.00 4.94
14 15 6.698766 CCCTTGCAAAAATAAGCTCATATCAC 59.301 38.462 0.00 0.00 0.00 3.06
44 45 5.891551 AGTGGAAAGTAAAGCTCCTGAAAAA 59.108 36.000 0.00 0.00 0.00 1.94
45 46 5.445964 AGTGGAAAGTAAAGCTCCTGAAAA 58.554 37.500 0.00 0.00 0.00 2.29
46 47 5.048846 AGTGGAAAGTAAAGCTCCTGAAA 57.951 39.130 0.00 0.00 0.00 2.69
47 48 4.706842 AGTGGAAAGTAAAGCTCCTGAA 57.293 40.909 0.00 0.00 0.00 3.02
77 80 0.036732 CTCACTGCTGGGCCAAAGTA 59.963 55.000 18.38 0.00 0.00 2.24
78 81 1.228367 CTCACTGCTGGGCCAAAGT 60.228 57.895 8.04 11.86 0.00 2.66
79 82 1.228367 ACTCACTGCTGGGCCAAAG 60.228 57.895 8.04 11.14 0.00 2.77
81 84 2.116983 GAGACTCACTGCTGGGCCAA 62.117 60.000 8.04 0.00 0.00 4.52
82 85 2.527624 AGACTCACTGCTGGGCCA 60.528 61.111 5.85 5.85 0.00 5.36
83 86 2.267324 GAGACTCACTGCTGGGCC 59.733 66.667 0.00 0.00 0.00 5.80
84 87 2.267324 GGAGACTCACTGCTGGGC 59.733 66.667 4.53 0.00 34.09 5.36
85 88 1.483595 TTGGGAGACTCACTGCTGGG 61.484 60.000 6.23 0.00 37.14 4.45
86 89 0.397941 TTTGGGAGACTCACTGCTGG 59.602 55.000 6.23 0.00 37.14 4.85
87 90 2.260844 TTTTGGGAGACTCACTGCTG 57.739 50.000 6.23 0.00 37.14 4.41
107 110 0.955905 AACCGCCTGCGTGTTATTTT 59.044 45.000 10.94 0.00 37.81 1.82
113 116 3.582120 CAACAACCGCCTGCGTGT 61.582 61.111 10.94 6.38 37.81 4.49
114 117 4.980903 GCAACAACCGCCTGCGTG 62.981 66.667 10.94 5.72 37.81 5.34
116 119 4.688419 CTGCAACAACCGCCTGCG 62.688 66.667 4.20 4.20 38.97 5.18
117 120 2.348605 TTTCTGCAACAACCGCCTGC 62.349 55.000 0.00 0.00 36.60 4.85
118 121 0.102120 TTTTCTGCAACAACCGCCTG 59.898 50.000 0.00 0.00 0.00 4.85
119 122 0.102300 GTTTTCTGCAACAACCGCCT 59.898 50.000 0.00 0.00 0.00 5.52
120 123 0.179124 TGTTTTCTGCAACAACCGCC 60.179 50.000 0.00 0.00 33.60 6.13
121 124 1.199624 CTGTTTTCTGCAACAACCGC 58.800 50.000 0.00 0.00 36.22 5.68
122 125 2.842208 TCTGTTTTCTGCAACAACCG 57.158 45.000 0.00 0.00 36.22 4.44
126 129 7.064490 GGAAGAATTTTTCTGTTTTCTGCAACA 59.936 33.333 8.47 0.00 40.59 3.33
136 139 5.845391 TTCCGTGGAAGAATTTTTCTGTT 57.155 34.783 8.47 0.00 40.59 3.16
141 144 8.987890 CATGTTATTTTCCGTGGAAGAATTTTT 58.012 29.630 1.01 0.00 35.38 1.94
156 159 5.638657 TGCCAGTGAAATGCATGTTATTTTC 59.361 36.000 0.00 0.00 0.00 2.29
164 167 2.156117 CGTTTTGCCAGTGAAATGCATG 59.844 45.455 0.00 0.00 34.51 4.06
166 169 1.135915 ACGTTTTGCCAGTGAAATGCA 59.864 42.857 0.00 0.00 0.00 3.96
167 170 1.786579 GACGTTTTGCCAGTGAAATGC 59.213 47.619 0.00 0.00 0.00 3.56
168 171 3.354089 AGACGTTTTGCCAGTGAAATG 57.646 42.857 0.00 0.00 0.00 2.32
171 174 2.088423 ACAAGACGTTTTGCCAGTGAA 58.912 42.857 17.93 0.00 0.00 3.18
173 176 3.896648 ATACAAGACGTTTTGCCAGTG 57.103 42.857 17.93 0.00 0.00 3.66
178 218 7.801315 TCTGTTCATAAATACAAGACGTTTTGC 59.199 33.333 17.93 0.00 0.00 3.68
243 283 4.472690 AGGAACGGAGGGAGTAGATAAT 57.527 45.455 0.00 0.00 0.00 1.28
245 285 5.393068 TTTAGGAACGGAGGGAGTAGATA 57.607 43.478 0.00 0.00 0.00 1.98
246 286 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
247 287 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
248 288 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
250 290 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
251 291 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
252 292 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
253 293 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
254 294 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
255 295 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
256 296 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
257 297 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
258 298 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
269 309 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
270 310 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
271 311 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
272 312 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
273 313 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
274 314 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
275 315 8.494347 CAGTCACTTGTTGAAATCTCTAGAAAG 58.506 37.037 0.00 0.00 35.39 2.62
276 316 7.041780 GCAGTCACTTGTTGAAATCTCTAGAAA 60.042 37.037 0.00 0.00 35.39 2.52
277 317 6.425114 GCAGTCACTTGTTGAAATCTCTAGAA 59.575 38.462 0.00 0.00 35.39 2.10
278 318 5.928839 GCAGTCACTTGTTGAAATCTCTAGA 59.071 40.000 0.00 0.00 35.39 2.43
279 319 5.698089 TGCAGTCACTTGTTGAAATCTCTAG 59.302 40.000 0.00 0.00 35.39 2.43
280 320 5.610398 TGCAGTCACTTGTTGAAATCTCTA 58.390 37.500 0.00 0.00 35.39 2.43
281 321 4.454678 TGCAGTCACTTGTTGAAATCTCT 58.545 39.130 0.00 0.00 35.39 3.10
282 322 4.818534 TGCAGTCACTTGTTGAAATCTC 57.181 40.909 0.00 0.00 35.39 2.75
283 323 5.106948 CGTATGCAGTCACTTGTTGAAATCT 60.107 40.000 0.00 0.00 35.39 2.40
284 324 5.082059 CGTATGCAGTCACTTGTTGAAATC 58.918 41.667 0.00 0.00 35.39 2.17
285 325 4.083324 CCGTATGCAGTCACTTGTTGAAAT 60.083 41.667 0.00 0.00 35.39 2.17
286 326 3.249799 CCGTATGCAGTCACTTGTTGAAA 59.750 43.478 0.00 0.00 35.39 2.69
287 327 2.805671 CCGTATGCAGTCACTTGTTGAA 59.194 45.455 0.00 0.00 35.39 2.69
288 328 2.412870 CCGTATGCAGTCACTTGTTGA 58.587 47.619 0.00 0.00 0.00 3.18
289 329 1.135972 GCCGTATGCAGTCACTTGTTG 60.136 52.381 0.00 0.00 40.77 3.33
290 330 1.156736 GCCGTATGCAGTCACTTGTT 58.843 50.000 0.00 0.00 40.77 2.83
291 331 1.014044 CGCCGTATGCAGTCACTTGT 61.014 55.000 0.00 0.00 41.33 3.16
292 332 1.709760 CGCCGTATGCAGTCACTTG 59.290 57.895 0.00 0.00 41.33 3.16
293 333 2.100631 GCGCCGTATGCAGTCACTT 61.101 57.895 0.00 0.00 41.33 3.16
294 334 2.509336 GCGCCGTATGCAGTCACT 60.509 61.111 0.00 0.00 41.33 3.41
295 335 1.906994 TTTGCGCCGTATGCAGTCAC 61.907 55.000 4.18 0.00 44.28 3.67
296 336 1.231296 TTTTGCGCCGTATGCAGTCA 61.231 50.000 4.18 0.00 44.28 3.41
297 337 0.098728 ATTTTGCGCCGTATGCAGTC 59.901 50.000 4.18 0.00 44.28 3.51
298 338 0.179166 CATTTTGCGCCGTATGCAGT 60.179 50.000 4.18 0.00 44.28 4.40
299 339 0.098552 TCATTTTGCGCCGTATGCAG 59.901 50.000 4.18 0.00 44.28 4.41
300 340 0.098552 CTCATTTTGCGCCGTATGCA 59.901 50.000 4.18 0.00 41.33 3.96
301 341 0.098728 ACTCATTTTGCGCCGTATGC 59.901 50.000 4.18 0.00 0.00 3.14
302 342 1.396648 TCACTCATTTTGCGCCGTATG 59.603 47.619 4.18 5.63 0.00 2.39
303 343 1.732941 TCACTCATTTTGCGCCGTAT 58.267 45.000 4.18 0.00 0.00 3.06
304 344 1.514003 TTCACTCATTTTGCGCCGTA 58.486 45.000 4.18 0.00 0.00 4.02
305 345 0.881118 ATTCACTCATTTTGCGCCGT 59.119 45.000 4.18 0.00 0.00 5.68
306 346 1.131126 AGATTCACTCATTTTGCGCCG 59.869 47.619 4.18 0.00 0.00 6.46
307 347 2.927553 AGATTCACTCATTTTGCGCC 57.072 45.000 4.18 0.00 0.00 6.53
308 348 4.091424 GTGTAGATTCACTCATTTTGCGC 58.909 43.478 0.00 0.00 35.68 6.09
309 349 5.536554 AGTGTAGATTCACTCATTTTGCG 57.463 39.130 0.00 0.00 44.07 4.85
310 350 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
328 368 9.669353 GGATGTATGCAGACATATTTTAAAGTG 57.331 33.333 25.90 0.00 40.18 3.16
329 369 8.559536 CGGATGTATGCAGACATATTTTAAAGT 58.440 33.333 25.90 1.54 40.18 2.66
330 370 8.559536 ACGGATGTATGCAGACATATTTTAAAG 58.440 33.333 25.90 13.12 40.18 1.85
331 371 8.445275 ACGGATGTATGCAGACATATTTTAAA 57.555 30.769 25.90 0.00 40.18 1.52
332 372 9.719355 ATACGGATGTATGCAGACATATTTTAA 57.281 29.630 25.90 10.76 40.18 1.52
347 387 5.808366 ATGGACTCAACATACGGATGTAT 57.192 39.130 15.10 0.00 45.93 2.29
348 388 5.607939 AATGGACTCAACATACGGATGTA 57.392 39.130 15.10 0.00 45.93 2.29
350 390 4.875536 TCAAATGGACTCAACATACGGATG 59.124 41.667 5.94 5.94 39.16 3.51
351 391 5.097742 TCAAATGGACTCAACATACGGAT 57.902 39.130 0.00 0.00 0.00 4.18
352 392 4.545208 TCAAATGGACTCAACATACGGA 57.455 40.909 0.00 0.00 0.00 4.69
353 393 5.621197 TTTCAAATGGACTCAACATACGG 57.379 39.130 0.00 0.00 0.00 4.02
354 394 5.512788 GCATTTCAAATGGACTCAACATACG 59.487 40.000 12.14 0.00 0.00 3.06
355 395 5.807011 GGCATTTCAAATGGACTCAACATAC 59.193 40.000 12.14 0.00 0.00 2.39
356 396 5.716228 AGGCATTTCAAATGGACTCAACATA 59.284 36.000 12.14 0.00 0.00 2.29
357 397 4.529377 AGGCATTTCAAATGGACTCAACAT 59.471 37.500 12.14 0.00 0.00 2.71
358 398 3.896888 AGGCATTTCAAATGGACTCAACA 59.103 39.130 12.14 0.00 0.00 3.33
359 399 4.525912 AGGCATTTCAAATGGACTCAAC 57.474 40.909 12.14 0.00 0.00 3.18
360 400 5.569355 TCTAGGCATTTCAAATGGACTCAA 58.431 37.500 12.14 0.00 0.00 3.02
361 401 5.178096 TCTAGGCATTTCAAATGGACTCA 57.822 39.130 12.14 0.00 0.00 3.41
362 402 6.375455 TCTTTCTAGGCATTTCAAATGGACTC 59.625 38.462 12.14 0.00 0.00 3.36
363 403 6.151817 GTCTTTCTAGGCATTTCAAATGGACT 59.848 38.462 12.14 3.08 0.00 3.85
364 404 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
365 405 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
366 406 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
367 407 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
368 408 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
369 409 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
370 410 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
371 411 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
372 412 9.346725 CAAAATACTTGTCTTTCTAGGCATTTC 57.653 33.333 0.00 0.00 35.56 2.17
373 413 8.306761 CCAAAATACTTGTCTTTCTAGGCATTT 58.693 33.333 0.00 0.00 35.56 2.32
374 414 7.669722 TCCAAAATACTTGTCTTTCTAGGCATT 59.330 33.333 0.00 0.00 35.56 3.56
375 415 7.175104 TCCAAAATACTTGTCTTTCTAGGCAT 58.825 34.615 0.00 0.00 35.56 4.40
376 416 6.539173 TCCAAAATACTTGTCTTTCTAGGCA 58.461 36.000 0.00 0.00 33.22 4.75
377 417 7.306213 GTTCCAAAATACTTGTCTTTCTAGGC 58.694 38.462 0.00 0.00 0.00 3.93
378 418 7.360946 CCGTTCCAAAATACTTGTCTTTCTAGG 60.361 40.741 0.00 0.00 0.00 3.02
379 419 7.386848 TCCGTTCCAAAATACTTGTCTTTCTAG 59.613 37.037 0.00 0.00 0.00 2.43
380 420 7.218614 TCCGTTCCAAAATACTTGTCTTTCTA 58.781 34.615 0.00 0.00 0.00 2.10
381 421 6.059484 TCCGTTCCAAAATACTTGTCTTTCT 58.941 36.000 0.00 0.00 0.00 2.52
382 422 6.308371 TCCGTTCCAAAATACTTGTCTTTC 57.692 37.500 0.00 0.00 0.00 2.62
383 423 5.240844 CCTCCGTTCCAAAATACTTGTCTTT 59.759 40.000 0.00 0.00 0.00 2.52
384 424 4.760204 CCTCCGTTCCAAAATACTTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
385 425 4.324267 CCTCCGTTCCAAAATACTTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
386 426 3.439129 CCCTCCGTTCCAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
387 427 3.073356 TCCCTCCGTTCCAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
388 428 3.681593 TCCCTCCGTTCCAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
389 429 3.329814 ACTCCCTCCGTTCCAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
390 430 2.910977 ACTCCCTCCGTTCCAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
391 431 3.345508 ACTCCCTCCGTTCCAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
392 432 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
393 433 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
394 434 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
395 435 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
396 436 2.225091 TGTACTACTCCCTCCGTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
397 437 1.355381 TGTACTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53
398 438 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
399 439 4.159135 TCATTTGTACTACTCCCTCCGTTC 59.841 45.833 0.00 0.00 0.00 3.95
400 440 4.091549 TCATTTGTACTACTCCCTCCGTT 58.908 43.478 0.00 0.00 0.00 4.44
401 441 3.705051 TCATTTGTACTACTCCCTCCGT 58.295 45.455 0.00 0.00 0.00 4.69
402 442 4.730949 TTCATTTGTACTACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
403 443 7.065923 GTGAAATTCATTTGTACTACTCCCTCC 59.934 40.741 0.00 0.00 0.00 4.30
404 444 7.824779 AGTGAAATTCATTTGTACTACTCCCTC 59.175 37.037 0.00 0.00 0.00 4.30
405 445 7.607991 CAGTGAAATTCATTTGTACTACTCCCT 59.392 37.037 0.00 0.00 0.00 4.20
406 446 7.626452 GCAGTGAAATTCATTTGTACTACTCCC 60.626 40.741 0.00 0.00 0.00 4.30
407 447 7.094805 TGCAGTGAAATTCATTTGTACTACTCC 60.095 37.037 0.00 0.00 0.00 3.85
408 448 7.806690 TGCAGTGAAATTCATTTGTACTACTC 58.193 34.615 0.00 0.00 0.00 2.59
409 449 7.744087 TGCAGTGAAATTCATTTGTACTACT 57.256 32.000 0.00 0.00 0.00 2.57
410 450 8.795786 TTTGCAGTGAAATTCATTTGTACTAC 57.204 30.769 0.00 0.00 0.00 2.73
411 451 9.979578 AATTTGCAGTGAAATTCATTTGTACTA 57.020 25.926 0.00 0.00 31.21 1.82
412 452 8.767085 CAATTTGCAGTGAAATTCATTTGTACT 58.233 29.630 0.00 0.00 34.05 2.73
413 453 8.763356 TCAATTTGCAGTGAAATTCATTTGTAC 58.237 29.630 0.00 0.00 34.05 2.90
431 471 7.013529 GCTCAAAATTCTGACATTCAATTTGC 58.986 34.615 0.00 0.00 31.56 3.68
434 474 7.333423 CCATGCTCAAAATTCTGACATTCAATT 59.667 33.333 0.00 0.00 0.00 2.32
435 475 6.816640 CCATGCTCAAAATTCTGACATTCAAT 59.183 34.615 0.00 0.00 0.00 2.57
436 476 6.160684 CCATGCTCAAAATTCTGACATTCAA 58.839 36.000 0.00 0.00 0.00 2.69
437 477 5.716094 CCATGCTCAAAATTCTGACATTCA 58.284 37.500 0.00 0.00 0.00 2.57
438 478 4.565564 GCCATGCTCAAAATTCTGACATTC 59.434 41.667 0.00 0.00 0.00 2.67
439 479 4.020928 TGCCATGCTCAAAATTCTGACATT 60.021 37.500 0.00 0.00 0.00 2.71
442 482 3.192001 TCTGCCATGCTCAAAATTCTGAC 59.808 43.478 0.00 0.00 0.00 3.51
443 483 3.423749 TCTGCCATGCTCAAAATTCTGA 58.576 40.909 0.00 0.00 0.00 3.27
444 484 3.861276 TCTGCCATGCTCAAAATTCTG 57.139 42.857 0.00 0.00 0.00 3.02
445 485 4.021229 TGATCTGCCATGCTCAAAATTCT 58.979 39.130 0.00 0.00 0.00 2.40
446 486 4.380841 TGATCTGCCATGCTCAAAATTC 57.619 40.909 0.00 0.00 0.00 2.17
447 487 4.811969 TTGATCTGCCATGCTCAAAATT 57.188 36.364 0.00 0.00 0.00 1.82
448 488 4.222145 AGTTTGATCTGCCATGCTCAAAAT 59.778 37.500 0.00 1.56 38.81 1.82
453 493 3.863142 AAAGTTTGATCTGCCATGCTC 57.137 42.857 0.00 0.00 0.00 4.26
458 498 5.850557 TCAAGAAAAAGTTTGATCTGCCA 57.149 34.783 5.26 0.00 0.00 4.92
482 522 7.970384 TCACCATTCTCGTAACAACATAATTC 58.030 34.615 0.00 0.00 0.00 2.17
483 523 7.915293 TCACCATTCTCGTAACAACATAATT 57.085 32.000 0.00 0.00 0.00 1.40
495 540 5.163854 CGCTAAAGAAAATCACCATTCTCGT 60.164 40.000 0.00 0.00 34.90 4.18
506 551 3.684788 TGTCAGGCTCGCTAAAGAAAATC 59.315 43.478 0.00 0.00 0.00 2.17
517 563 1.730446 GCAATTCTTTGTCAGGCTCGC 60.730 52.381 0.00 0.00 35.17 5.03
537 583 1.365699 GCAAGCATGGCAAATTCTGG 58.634 50.000 0.00 0.00 32.79 3.86
553 599 5.299782 ACGTTATGGTAGTTTTCTTTGGCAA 59.700 36.000 0.00 0.00 0.00 4.52
554 600 4.822896 ACGTTATGGTAGTTTTCTTTGGCA 59.177 37.500 0.00 0.00 0.00 4.92
557 603 9.458374 AATCAAACGTTATGGTAGTTTTCTTTG 57.542 29.630 0.00 0.00 36.12 2.77
560 606 8.626526 ACAAATCAAACGTTATGGTAGTTTTCT 58.373 29.630 0.00 0.00 36.12 2.52
561 607 8.791355 ACAAATCAAACGTTATGGTAGTTTTC 57.209 30.769 0.00 0.00 36.12 2.29
563 609 7.932335 TGACAAATCAAACGTTATGGTAGTTT 58.068 30.769 0.00 0.00 38.46 2.66
564 610 7.499321 TGACAAATCAAACGTTATGGTAGTT 57.501 32.000 0.00 0.00 0.00 2.24
565 611 7.361713 CCATGACAAATCAAACGTTATGGTAGT 60.362 37.037 0.00 1.92 40.25 2.73
566 612 6.966632 CCATGACAAATCAAACGTTATGGTAG 59.033 38.462 0.00 0.00 40.25 3.18
576 622 9.474920 TCAGATTTTAACCATGACAAATCAAAC 57.525 29.630 15.35 0.00 38.69 2.93
607 3385 2.202566 GTCTACCAAATCTGTAGCGGC 58.797 52.381 0.00 0.00 36.47 6.53
618 3396 0.319083 ACCGCGTGATGTCTACCAAA 59.681 50.000 4.92 0.00 0.00 3.28
634 3745 1.012486 GCACACTTTCCCGTAGACCG 61.012 60.000 0.00 0.00 0.00 4.79
669 3780 1.515020 GATGTCCTGTCAGCTCGCT 59.485 57.895 0.00 0.00 0.00 4.93
670 3781 1.520342 GGATGTCCTGTCAGCTCGC 60.520 63.158 0.00 0.00 0.00 5.03
671 3782 1.226802 CGGATGTCCTGTCAGCTCG 60.227 63.158 0.00 0.00 0.00 5.03
672 3783 0.532573 TTCGGATGTCCTGTCAGCTC 59.467 55.000 0.00 0.00 0.00 4.09
784 4017 2.279517 CGGGGAATTCGCTCTCGG 60.280 66.667 20.49 3.73 36.13 4.63
828 4061 4.514577 CTACTGACCTGCGGCGGG 62.515 72.222 26.03 26.03 35.68 6.13
831 4064 2.184579 GACCTACTGACCTGCGGC 59.815 66.667 0.00 0.00 0.00 6.53
832 4065 1.215647 GTGACCTACTGACCTGCGG 59.784 63.158 0.00 0.00 0.00 5.69
833 4066 0.109086 CTGTGACCTACTGACCTGCG 60.109 60.000 0.00 0.00 0.00 5.18
834 4067 0.247736 CCTGTGACCTACTGACCTGC 59.752 60.000 0.00 0.00 0.00 4.85
835 4068 1.633774 ACCTGTGACCTACTGACCTG 58.366 55.000 0.00 0.00 0.00 4.00
836 4069 2.368875 CAAACCTGTGACCTACTGACCT 59.631 50.000 0.00 0.00 0.00 3.85
837 4070 2.767505 CAAACCTGTGACCTACTGACC 58.232 52.381 0.00 0.00 0.00 4.02
838 4071 2.143925 GCAAACCTGTGACCTACTGAC 58.856 52.381 0.00 0.00 0.00 3.51
839 4072 1.765904 TGCAAACCTGTGACCTACTGA 59.234 47.619 0.00 0.00 0.00 3.41
840 4073 2.254546 TGCAAACCTGTGACCTACTG 57.745 50.000 0.00 0.00 0.00 2.74
841 4074 2.639839 AGATGCAAACCTGTGACCTACT 59.360 45.455 0.00 0.00 0.00 2.57
891 4129 2.433318 GTGCCCGTCAGTGAGAGC 60.433 66.667 0.00 0.00 0.00 4.09
893 4131 1.407656 AAAGGTGCCCGTCAGTGAGA 61.408 55.000 0.00 0.00 0.00 3.27
923 4169 2.401766 GGCGGAGTGATTGGCTGTG 61.402 63.158 0.00 0.00 0.00 3.66
924 4170 2.045926 GGCGGAGTGATTGGCTGT 60.046 61.111 0.00 0.00 0.00 4.40
925 4171 0.962356 AAAGGCGGAGTGATTGGCTG 60.962 55.000 0.00 0.00 38.65 4.85
926 4172 0.251341 AAAAGGCGGAGTGATTGGCT 60.251 50.000 0.00 0.00 40.62 4.75
927 4173 0.171231 GAAAAGGCGGAGTGATTGGC 59.829 55.000 0.00 0.00 0.00 4.52
928 4174 1.470098 CTGAAAAGGCGGAGTGATTGG 59.530 52.381 0.00 0.00 0.00 3.16
929 4175 1.135575 GCTGAAAAGGCGGAGTGATTG 60.136 52.381 0.00 0.00 0.00 2.67
930 4176 1.168714 GCTGAAAAGGCGGAGTGATT 58.831 50.000 0.00 0.00 0.00 2.57
931 4177 0.678048 GGCTGAAAAGGCGGAGTGAT 60.678 55.000 0.00 0.00 0.00 3.06
932 4178 1.302511 GGCTGAAAAGGCGGAGTGA 60.303 57.895 0.00 0.00 0.00 3.41
1304 4605 5.122707 TCACCATCACAGACTAGATCTCT 57.877 43.478 0.00 0.00 34.41 3.10
1307 4608 5.301551 AGTCATCACCATCACAGACTAGATC 59.698 44.000 0.00 0.00 34.83 2.75
1310 4611 4.202101 GGAGTCATCACCATCACAGACTAG 60.202 50.000 0.00 0.00 36.56 2.57
1323 4624 0.390340 TTGCAGCTCGGAGTCATCAC 60.390 55.000 6.90 0.00 0.00 3.06
1353 4656 1.539827 AGCACTTGTTAATTGGCCGAC 59.460 47.619 0.00 0.00 0.00 4.79
1407 4715 0.739813 AAGCGGCGAGTAATCCACAC 60.740 55.000 12.98 0.00 0.00 3.82
1421 4730 1.061711 CAGAGCAATCGAAGAAAGCGG 59.938 52.381 0.00 0.00 43.58 5.52
1437 4746 5.437289 TCCACAAGTAAAATTGCACAGAG 57.563 39.130 0.00 0.00 33.28 3.35
1481 4790 3.074390 TGGATTTTCAAGAAGAGGAGCCA 59.926 43.478 0.00 0.00 0.00 4.75
1503 4815 6.326323 AGGAGAAAGAAAAGAACTCTGTCTCT 59.674 38.462 16.04 4.13 46.89 3.10
1507 4819 7.368198 ACTAGGAGAAAGAAAAGAACTCTGT 57.632 36.000 0.00 0.00 0.00 3.41
1539 4853 8.784043 GGAGTGAACACTAATTAATGTTTGTCT 58.216 33.333 13.10 11.26 42.66 3.41
1545 4859 7.176690 CCTTTGGGAGTGAACACTAATTAATGT 59.823 37.037 7.46 0.00 42.66 2.71
1573 4892 9.047371 GCCTGTTCCTCTTATAGTAATTTTCTC 57.953 37.037 0.00 0.00 0.00 2.87
1583 4902 3.070302 GGTCAGGCCTGTTCCTCTTATAG 59.930 52.174 31.58 1.72 33.25 1.31
1584 4903 3.039011 GGTCAGGCCTGTTCCTCTTATA 58.961 50.000 31.58 5.96 33.25 0.98
1585 4904 1.840635 GGTCAGGCCTGTTCCTCTTAT 59.159 52.381 31.58 0.00 33.25 1.73
1586 4905 1.276622 GGTCAGGCCTGTTCCTCTTA 58.723 55.000 31.58 7.59 33.25 2.10
1587 4906 1.831652 CGGTCAGGCCTGTTCCTCTT 61.832 60.000 31.58 0.00 33.25 2.85
1588 4907 2.286523 CGGTCAGGCCTGTTCCTCT 61.287 63.158 31.58 0.00 33.25 3.69
1589 4908 2.113243 AACGGTCAGGCCTGTTCCTC 62.113 60.000 31.58 16.85 33.25 3.71
1590 4909 1.705997 AAACGGTCAGGCCTGTTCCT 61.706 55.000 31.58 19.44 34.56 3.36
1591 4910 0.822121 AAAACGGTCAGGCCTGTTCC 60.822 55.000 31.58 29.18 34.56 3.62
1592 4911 0.310854 CAAAACGGTCAGGCCTGTTC 59.689 55.000 31.58 23.69 34.56 3.18
1596 4915 1.029681 GAAACAAAACGGTCAGGCCT 58.970 50.000 0.00 0.00 34.25 5.19
1599 4918 5.468746 TCAGATAAGAAACAAAACGGTCAGG 59.531 40.000 0.00 0.00 0.00 3.86
1600 4919 6.539649 TCAGATAAGAAACAAAACGGTCAG 57.460 37.500 0.00 0.00 0.00 3.51
1673 4992 3.485216 GGTGAATATGGTTGCTTCGAACG 60.485 47.826 0.00 0.00 0.00 3.95
1697 5025 4.108570 TGTAAAAGATCTCAGGGGGCTTA 58.891 43.478 0.00 0.00 0.00 3.09
1707 5035 5.098211 GCACCTTGCATTGTAAAAGATCTC 58.902 41.667 0.00 0.00 44.26 2.75
1722 5050 5.573337 ATTTATTTCTCTGAGCACCTTGC 57.427 39.130 0.00 0.00 45.46 4.01
1723 5051 7.337942 ACCTAATTTATTTCTCTGAGCACCTTG 59.662 37.037 0.00 0.00 0.00 3.61
1745 5086 4.089408 ACCGGTGCTTAAGAAAAACCTA 57.911 40.909 6.12 0.00 0.00 3.08
1754 5095 4.177783 ACAAACAAAAACCGGTGCTTAAG 58.822 39.130 8.52 4.29 0.00 1.85
1760 5101 3.799420 CCATGTACAAACAAAAACCGGTG 59.201 43.478 8.52 0.00 39.58 4.94
1761 5102 3.447944 ACCATGTACAAACAAAAACCGGT 59.552 39.130 0.00 0.00 39.58 5.28
1774 5115 8.268605 TGCCTAAATAAACATCTACCATGTACA 58.731 33.333 0.00 0.00 0.00 2.90
1775 5116 8.557029 GTGCCTAAATAAACATCTACCATGTAC 58.443 37.037 0.00 0.00 0.00 2.90
1780 5121 5.442391 GGGTGCCTAAATAAACATCTACCA 58.558 41.667 0.00 0.00 0.00 3.25
1781 5122 4.825634 GGGGTGCCTAAATAAACATCTACC 59.174 45.833 0.00 0.00 0.00 3.18
1787 5128 4.202631 ACAGAAGGGGTGCCTAAATAAACA 60.203 41.667 0.00 0.00 0.00 2.83
1789 5130 4.668138 ACAGAAGGGGTGCCTAAATAAA 57.332 40.909 0.00 0.00 0.00 1.40
1793 5134 3.653836 TCTTTACAGAAGGGGTGCCTAAA 59.346 43.478 0.00 0.00 0.00 1.85
1794 5135 3.253220 TCTTTACAGAAGGGGTGCCTAA 58.747 45.455 0.00 0.00 0.00 2.69
1837 5178 7.307514 CCTTGTACAATGCAAGACGTTTAGTAA 60.308 37.037 9.13 0.00 44.29 2.24
1838 5179 6.146510 CCTTGTACAATGCAAGACGTTTAGTA 59.853 38.462 9.13 0.00 44.29 1.82
1839 5180 5.049680 CCTTGTACAATGCAAGACGTTTAGT 60.050 40.000 9.13 0.00 44.29 2.24
1840 5181 5.049680 ACCTTGTACAATGCAAGACGTTTAG 60.050 40.000 9.13 0.00 44.29 1.85
1841 5182 4.817464 ACCTTGTACAATGCAAGACGTTTA 59.183 37.500 9.13 0.00 44.29 2.01
1842 5183 3.630312 ACCTTGTACAATGCAAGACGTTT 59.370 39.130 9.13 0.00 44.29 3.60
1843 5184 3.211045 ACCTTGTACAATGCAAGACGTT 58.789 40.909 9.13 0.00 44.29 3.99
1844 5185 2.806244 GACCTTGTACAATGCAAGACGT 59.194 45.455 9.13 0.00 44.29 4.34
1845 5186 3.067106 AGACCTTGTACAATGCAAGACG 58.933 45.455 9.13 0.00 44.29 4.18
1846 5187 6.743575 ATTAGACCTTGTACAATGCAAGAC 57.256 37.500 9.13 3.01 44.29 3.01
1847 5188 8.892723 CATTATTAGACCTTGTACAATGCAAGA 58.107 33.333 9.13 0.00 44.29 3.02
1848 5189 7.645340 GCATTATTAGACCTTGTACAATGCAAG 59.355 37.037 9.13 0.00 43.92 4.01
1849 5190 7.339212 AGCATTATTAGACCTTGTACAATGCAA 59.661 33.333 19.72 9.62 45.82 4.08
1850 5191 6.828273 AGCATTATTAGACCTTGTACAATGCA 59.172 34.615 19.72 0.00 45.82 3.96
1851 5192 7.134815 CAGCATTATTAGACCTTGTACAATGC 58.865 38.462 9.13 11.55 44.50 3.56
1852 5193 7.134815 GCAGCATTATTAGACCTTGTACAATG 58.865 38.462 9.13 9.11 0.00 2.82
1853 5194 6.263168 GGCAGCATTATTAGACCTTGTACAAT 59.737 38.462 9.13 0.00 0.00 2.71
1854 5195 5.588648 GGCAGCATTATTAGACCTTGTACAA 59.411 40.000 8.28 8.28 0.00 2.41
1855 5196 5.123227 GGCAGCATTATTAGACCTTGTACA 58.877 41.667 0.00 0.00 0.00 2.90
1856 5197 5.123227 TGGCAGCATTATTAGACCTTGTAC 58.877 41.667 0.00 0.00 0.00 2.90
1857 5198 5.366482 TGGCAGCATTATTAGACCTTGTA 57.634 39.130 0.00 0.00 0.00 2.41
1858 5199 4.235079 TGGCAGCATTATTAGACCTTGT 57.765 40.909 0.00 0.00 0.00 3.16
1859 5200 4.398988 TGTTGGCAGCATTATTAGACCTTG 59.601 41.667 0.00 0.00 0.00 3.61
1860 5201 4.599041 TGTTGGCAGCATTATTAGACCTT 58.401 39.130 0.00 0.00 0.00 3.50
1861 5202 4.235079 TGTTGGCAGCATTATTAGACCT 57.765 40.909 0.00 0.00 0.00 3.85
1862 5203 4.981806 TTGTTGGCAGCATTATTAGACC 57.018 40.909 4.45 0.00 0.00 3.85
1863 5204 7.707104 AGTTATTGTTGGCAGCATTATTAGAC 58.293 34.615 4.45 1.87 0.00 2.59
1864 5205 7.880160 AGTTATTGTTGGCAGCATTATTAGA 57.120 32.000 4.45 0.00 0.00 2.10
1865 5206 8.408601 AGAAGTTATTGTTGGCAGCATTATTAG 58.591 33.333 4.45 0.00 0.00 1.73
1866 5207 8.190122 CAGAAGTTATTGTTGGCAGCATTATTA 58.810 33.333 4.45 0.00 0.00 0.98
1913 5264 1.398071 GCTTTCGTACCGTTGCAAGTC 60.398 52.381 0.00 0.00 0.00 3.01
1915 5266 0.584396 TGCTTTCGTACCGTTGCAAG 59.416 50.000 0.00 0.00 0.00 4.01
1927 5278 3.064820 ACTGGTGTGTAAGTTTGCTTTCG 59.935 43.478 0.00 0.00 36.22 3.46
1978 5379 9.250624 CCGGAGAAATTAGAGTTTTCATACTAG 57.749 37.037 0.00 0.00 35.90 2.57
1979 5380 8.202137 CCCGGAGAAATTAGAGTTTTCATACTA 58.798 37.037 0.73 0.00 35.90 1.82
1980 5381 7.048512 CCCGGAGAAATTAGAGTTTTCATACT 58.951 38.462 0.73 0.00 35.90 2.12
1981 5382 7.046033 TCCCGGAGAAATTAGAGTTTTCATAC 58.954 38.462 0.73 0.00 35.90 2.39
1982 5383 7.190335 TCCCGGAGAAATTAGAGTTTTCATA 57.810 36.000 0.73 0.00 35.90 2.15
1983 5384 6.062258 TCCCGGAGAAATTAGAGTTTTCAT 57.938 37.500 0.73 0.00 35.90 2.57
1984 5385 5.492855 TCCCGGAGAAATTAGAGTTTTCA 57.507 39.130 0.73 0.00 35.90 2.69
1985 5386 5.123502 GGTTCCCGGAGAAATTAGAGTTTTC 59.876 44.000 0.73 0.00 35.85 2.29
1986 5387 5.008331 GGTTCCCGGAGAAATTAGAGTTTT 58.992 41.667 0.73 0.00 35.85 2.43
1987 5388 4.586884 GGTTCCCGGAGAAATTAGAGTTT 58.413 43.478 0.73 0.00 35.85 2.66
1988 5389 3.369157 CGGTTCCCGGAGAAATTAGAGTT 60.369 47.826 0.73 0.00 44.15 3.01
1989 5390 2.167900 CGGTTCCCGGAGAAATTAGAGT 59.832 50.000 0.73 0.00 44.15 3.24
1990 5391 2.822764 CGGTTCCCGGAGAAATTAGAG 58.177 52.381 0.73 0.00 44.15 2.43
1991 5392 2.973694 CGGTTCCCGGAGAAATTAGA 57.026 50.000 0.73 0.00 44.15 2.10
2003 5404 4.048241 TGAAACAAAATTGACGGTTCCC 57.952 40.909 0.00 0.00 0.00 3.97
2024 5425 9.804758 CCGAAAGAGAAGTTTGTATACTAGAAT 57.195 33.333 4.17 0.00 0.00 2.40
2026 5427 8.345724 ACCGAAAGAGAAGTTTGTATACTAGA 57.654 34.615 4.17 0.00 0.00 2.43
2027 5428 8.460428 AGACCGAAAGAGAAGTTTGTATACTAG 58.540 37.037 4.17 0.00 0.00 2.57
2028 5429 8.345724 AGACCGAAAGAGAAGTTTGTATACTA 57.654 34.615 4.17 0.00 0.00 1.82
2029 5430 7.229581 AGACCGAAAGAGAAGTTTGTATACT 57.770 36.000 4.17 0.00 0.00 2.12
2030 5431 7.621633 GCAAGACCGAAAGAGAAGTTTGTATAC 60.622 40.741 0.00 0.00 0.00 1.47
2031 5432 6.367969 GCAAGACCGAAAGAGAAGTTTGTATA 59.632 38.462 0.00 0.00 0.00 1.47
2039 5613 4.245660 TGTATGCAAGACCGAAAGAGAAG 58.754 43.478 0.00 0.00 0.00 2.85
2061 5635 9.860898 GCTTATACTCAACAAGAATCCAAAAAT 57.139 29.630 0.00 0.00 0.00 1.82
2079 5653 9.937175 GCGAGAAATTTTAAGAATGCTTATACT 57.063 29.630 0.00 0.00 36.54 2.12
2080 5654 8.883168 CGCGAGAAATTTTAAGAATGCTTATAC 58.117 33.333 0.00 0.00 36.54 1.47
2119 5696 1.167851 CGGGAACAAGACATGCACAT 58.832 50.000 0.00 0.00 0.00 3.21
2120 5697 0.888736 CCGGGAACAAGACATGCACA 60.889 55.000 0.00 0.00 0.00 4.57
2121 5698 1.586154 CCCGGGAACAAGACATGCAC 61.586 60.000 18.48 0.00 0.00 4.57
2122 5699 1.303236 CCCGGGAACAAGACATGCA 60.303 57.895 18.48 0.00 0.00 3.96
2127 5704 1.335810 GAACAAACCCGGGAACAAGAC 59.664 52.381 32.02 8.98 0.00 3.01
2138 5715 7.269316 TGGTATTTTCTTTTGAGAACAAACCC 58.731 34.615 0.00 0.00 44.22 4.11
2144 5721 9.780413 GAGATGATGGTATTTTCTTTTGAGAAC 57.220 33.333 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.