AutoCloner

Multiple sequence alignment - TraesCS4A01G274800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G274800	chr4A	100.000	7219	0	0	1	7219	584381161	584388379	0.000000e+00	13332
1	TraesCS4A01G274800	chr4A	83.338	3919	623	26	1	3905	688501891	688505793	0.000000e+00	3592
2	TraesCS4A01G274800	chr4A	83.312	791	69	17	6459	7219	584354191	584354948	0.000000e+00	671
3	TraesCS4A01G274800	chr4A	88.148	135	13	1	7061	7192	584404601	584404467	2.700000e-34	158
4	TraesCS4A01G274800	chr6A	97.011	6458	164	13	1	6452	5288295	5281861	0.000000e+00	10829
5	TraesCS4A01G274800	chr6A	83.910	2946	450	21	236	3170	91337318	91334386	0.000000e+00	2793
6	TraesCS4A01G274800	chr6A	94.382	979	29	9	5477	6452	50185552	50186507	0.000000e+00	1480
7	TraesCS4A01G274800	chr6A	95.250	779	21	9	5675	6452	64257571	64256808	0.000000e+00	1219
8	TraesCS4A01G274800	chr6A	95.854	410	13	4	6045	6452	32239555	32239148	0.000000e+00	660
9	TraesCS4A01G274800	chr6A	86.730	211	20	7	6249	6452	184605650	184605859	2.030000e-55	228
10	TraesCS4A01G274800	chr2A	96.433	6476	185	22	1	6452	655766328	655772781	0.000000e+00	10637
11	TraesCS4A01G274800	chr2A	94.418	1684	71	11	4776	6452	634877082	634875415	0.000000e+00	2567
12	TraesCS4A01G274800	chr7A	95.806	6461	239	16	1	6452	12220535	12226972	0.000000e+00	10401
13	TraesCS4A01G274800	chrUn	83.734	6197	962	37	1	6174	81311748	81317921	0.000000e+00	5818
14	TraesCS4A01G274800	chr3A	92.059	4118	319	4	1	4113	12639877	12643991	0.000000e+00	5786
15	TraesCS4A01G274800	chr3A	87.325	4434	540	17	1751	6170	746379890	746384315	0.000000e+00	5055
16	TraesCS4A01G274800	chr6D	83.144	6247	983	52	1	6220	380504021	380497818	0.000000e+00	5638
17	TraesCS4A01G274800	chr5D	83.762	5869	906	41	376	6220	533247381	533253226	0.000000e+00	5515
18	TraesCS4A01G274800	chr1A	92.155	3531	271	6	2696	6223	510838056	510834529	0.000000e+00	4981
19	TraesCS4A01G274800	chr4B	85.159	4629	661	23	1560	6174	5582042	5577426	0.000000e+00	4719
20	TraesCS4A01G274800	chr4B	83.798	1543	239	9	25	1564	5594730	5593196	0.000000e+00	1454
21	TraesCS4A01G274800	chr4B	83.619	818	51	44	6459	7219	27902931	27902140	0.000000e+00	691
22	TraesCS4A01G274800	chr4D	87.845	798	39	21	6463	7219	16147919	16147139	0.000000e+00	883
23	TraesCS4A01G274800	chr4D	76.095	548	75	25	6677	7192	16142036	16142559	1.210000e-57	235
24	TraesCS4A01G274800	chr3B	80.451	399	73	5	1673	2067	54465679	54466076	4.230000e-77	300

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G274800	chr4A	584381161	584388379	7218	False	13332	13332	100.000	1	7219	1	chr4A.!!$F2	7218
1	TraesCS4A01G274800	chr4A	688501891	688505793	3902	False	3592	3592	83.338	1	3905	1	chr4A.!!$F3	3904
2	TraesCS4A01G274800	chr4A	584354191	584354948	757	False	671	671	83.312	6459	7219	1	chr4A.!!$F1	760
3	TraesCS4A01G274800	chr6A	5281861	5288295	6434	True	10829	10829	97.011	1	6452	1	chr6A.!!$R1	6451
4	TraesCS4A01G274800	chr6A	91334386	91337318	2932	True	2793	2793	83.910	236	3170	1	chr6A.!!$R4	2934
5	TraesCS4A01G274800	chr6A	50185552	50186507	955	False	1480	1480	94.382	5477	6452	1	chr6A.!!$F1	975
6	TraesCS4A01G274800	chr6A	64256808	64257571	763	True	1219	1219	95.250	5675	6452	1	chr6A.!!$R3	777
7	TraesCS4A01G274800	chr2A	655766328	655772781	6453	False	10637	10637	96.433	1	6452	1	chr2A.!!$F1	6451
8	TraesCS4A01G274800	chr2A	634875415	634877082	1667	True	2567	2567	94.418	4776	6452	1	chr2A.!!$R1	1676
9	TraesCS4A01G274800	chr7A	12220535	12226972	6437	False	10401	10401	95.806	1	6452	1	chr7A.!!$F1	6451
10	TraesCS4A01G274800	chrUn	81311748	81317921	6173	False	5818	5818	83.734	1	6174	1	chrUn.!!$F1	6173
11	TraesCS4A01G274800	chr3A	12639877	12643991	4114	False	5786	5786	92.059	1	4113	1	chr3A.!!$F1	4112
12	TraesCS4A01G274800	chr3A	746379890	746384315	4425	False	5055	5055	87.325	1751	6170	1	chr3A.!!$F2	4419
13	TraesCS4A01G274800	chr6D	380497818	380504021	6203	True	5638	5638	83.144	1	6220	1	chr6D.!!$R1	6219
14	TraesCS4A01G274800	chr5D	533247381	533253226	5845	False	5515	5515	83.762	376	6220	1	chr5D.!!$F1	5844
15	TraesCS4A01G274800	chr1A	510834529	510838056	3527	True	4981	4981	92.155	2696	6223	1	chr1A.!!$R1	3527
16	TraesCS4A01G274800	chr4B	5577426	5582042	4616	True	4719	4719	85.159	1560	6174	1	chr4B.!!$R1	4614
17	TraesCS4A01G274800	chr4B	5593196	5594730	1534	True	1454	1454	83.798	25	1564	1	chr4B.!!$R2	1539
18	TraesCS4A01G274800	chr4B	27902140	27902931	791	True	691	691	83.619	6459	7219	1	chr4B.!!$R3	760
19	TraesCS4A01G274800	chr4D	16147139	16147919	780	True	883	883	87.845	6463	7219	1	chr4D.!!$R1	756
20	TraesCS4A01G274800	chr4D	16142036	16142559	523	False	235	235	76.095	6677	7192	1	chr4D.!!$F1	515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
958	962	0.321671	CGCCCCTGTGAGAAGAGAAA	59.678	55.000	0.00	2.52	F
1264	1272	0.698238	CTGGGTGATTGTTGAGGGGA	59.302	55.000	0.00	4.81	F
2475	2489	2.224917	TGTGGGTGGAAGTGGGAATAAC	60.225	50.000	0.00	1.89	F
3333	3348	2.158682	ACACCATCACCTTGTGCAACTA	60.159	45.455	38.04	2.24	F
3910	3930	1.633432	CCCTGGTCCTGATGGTTTGTA	59.367	52.381	34.23	2.41	F
5078	5100	3.269381	TGCTAATTGGGGTTTGATCTCCT	59.731	43.478	0.00	3.69	F
5258	5280	3.971702	GGCAGGGTGTGGGCTCTT	61.972	66.667	0.00	2.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2475	2489	4.218852	AGACTAAAAAGTCCTCCTCTCACG	59.781	45.833	2.00	39.50	4.35	R
2659	2674	5.131142	ACACTAGAACCAGCTAAGGCATTAT	59.869	40.000	0.00	41.70	1.28	R
3538	3554	2.614259	TGGCAGTCTCTTCCTTCTTCT	58.386	47.619	0.00	0.00	2.85	R
5258	5280	1.420138	GGTGACACCTTTCCAGAAGGA	59.580	52.381	17.84	39.81	3.36	R
5631	5660	1.916181	CTCCAAATGGGGGTAGACACT	59.084	52.381	0.00	37.22	3.55	R
6159	6199	0.036199	CTCTTGCAAGCTCTCAGGCT	60.036	55.000	21.99	45.30	4.58	R
6249	6297	1.065491	TGACGGATACATTTGCCAGCT	60.065	47.619	0.00	0.00	4.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
117	118	5.392595	CGGAAAACCGTAAATCACCATTGAT	60.393	40.000	0.00	0.00	44.98	2.57
667	668	4.948257	CCTGGTAAAGGTACGCCC	57.052	61.111	0.00	0.00	41.74	6.13
949	953	2.994995	ACATCGACGCCCCTGTGA	60.995	61.111	0.00	0.00	0.00	3.58
958	962	0.321671	CGCCCCTGTGAGAAGAGAAA	59.678	55.000	0.00	0.00	0.00	2.52
995	999	6.989155	TTTTAGGAACTGTGGAGAAGTCTA	57.011	37.500	0.00	0.00	41.52	2.59
1264	1272	0.698238	CTGGGTGATTGTTGAGGGGA	59.302	55.000	0.00	0.00	0.00	4.81
1574	1583	2.962421	CAGAGGAGGAGGAACTGGATAC	59.038	54.545	0.00	0.00	41.55	2.24
2112	2125	2.289945	GCTGAGTTCCAGAGTCCACAAT	60.290	50.000	0.00	0.00	45.78	2.71
2475	2489	2.224917	TGTGGGTGGAAGTGGGAATAAC	60.225	50.000	0.00	0.00	0.00	1.89
2659	2674	6.498651	AGAGAAACTTTATCTGACTCCTTCCA	59.501	38.462	0.00	0.00	0.00	3.53
2992	3007	9.466497	GGATAAATCCTCAGGCAATATAAATGA	57.534	33.333	1.52	0.00	43.73	2.57
3035	3050	7.361438	TCAATGACTGGATAAATAAATGGGGT	58.639	34.615	0.00	0.00	0.00	4.95
3200	3215	4.489771	GGGAGTGACCATGCCCCG	62.490	72.222	0.00	0.00	41.20	5.73
3333	3348	2.158682	ACACCATCACCTTGTGCAACTA	60.159	45.455	0.00	0.00	38.04	2.24
3408	3423	3.966979	TGGAGCATTAATCTGGAAGCAA	58.033	40.909	0.00	0.00	0.00	3.91
3538	3554	8.846423	ATTAAAGAGGAACTTGAGGAGATCTA	57.154	34.615	0.00	0.00	41.55	1.98
3910	3930	1.633432	CCCTGGTCCTGATGGTTTGTA	59.367	52.381	0.00	0.00	34.23	2.41
4223	4243	5.020132	AGTGTAGTTACTTCTCATGAGGCT	58.980	41.667	22.42	12.64	0.00	4.58
4337	4357	6.143915	AGTAGAAATGCTTACATCTAGGGGA	58.856	40.000	0.00	0.00	34.62	4.81
4488	4510	4.263243	CCCCATGCTTTTTAATTTGGTGGA	60.263	41.667	0.00	0.00	0.00	4.02
5078	5100	3.269381	TGCTAATTGGGGTTTGATCTCCT	59.731	43.478	0.00	0.00	0.00	3.69
5216	5238	7.120579	AGCTGATCGACCACAAATATAAAACAA	59.879	33.333	0.00	0.00	0.00	2.83
5258	5280	3.971702	GGCAGGGTGTGGGCTCTT	61.972	66.667	0.00	0.00	0.00	2.85
5517	5540	7.606135	TTTGGATAGATGGCATGAATTGATT	57.394	32.000	3.81	0.00	0.00	2.57
5658	5687	5.483937	GTCTACCCCCATTTGGAGAAAATTT	59.516	40.000	0.00	0.00	36.28	1.82
5882	5912	9.846248	CTCTTTTGAGTTTAGTATTCCAAATGG	57.154	33.333	0.00	0.00	41.49	3.16
6159	6199	1.224315	CGGGATTGCATGGGAGTCA	59.776	57.895	0.00	0.00	0.00	3.41
6251	6299	9.283420	GATAAAAATAGCAGAGTGAAAAAGAGC	57.717	33.333	0.00	0.00	0.00	4.09
6252	6300	6.890979	AAAATAGCAGAGTGAAAAAGAGCT	57.109	33.333	0.00	0.00	34.84	4.09
6253	6301	5.876612	AATAGCAGAGTGAAAAAGAGCTG	57.123	39.130	0.00	0.00	32.49	4.24
6254	6302	2.502295	AGCAGAGTGAAAAAGAGCTGG	58.498	47.619	0.00	0.00	0.00	4.85
6255	6303	1.068679	GCAGAGTGAAAAAGAGCTGGC	60.069	52.381	0.00	0.00	0.00	4.85
6256	6304	2.224606	CAGAGTGAAAAAGAGCTGGCA	58.775	47.619	0.00	0.00	0.00	4.92
6257	6305	2.620115	CAGAGTGAAAAAGAGCTGGCAA	59.380	45.455	0.00	0.00	0.00	4.52
6258	6306	3.067180	CAGAGTGAAAAAGAGCTGGCAAA	59.933	43.478	0.00	0.00	0.00	3.68
6259	6307	3.893813	AGAGTGAAAAAGAGCTGGCAAAT	59.106	39.130	0.00	0.00	0.00	2.32
6260	6308	3.985925	GAGTGAAAAAGAGCTGGCAAATG	59.014	43.478	0.00	0.00	0.00	2.32
6261	6309	3.385755	AGTGAAAAAGAGCTGGCAAATGT	59.614	39.130	0.00	0.00	0.00	2.71
6265	6313	4.725790	AAAAGAGCTGGCAAATGTATCC	57.274	40.909	0.00	0.00	0.00	2.59
6302	6354	3.811497	CGTGGTAGATGTATGACCGTCTA	59.189	47.826	0.00	0.00	35.91	2.59
6306	6358	3.560902	AGATGTATGACCGTCTATGCG	57.439	47.619	0.00	0.00	0.00	4.73
6416	6470	2.220133	GTGACTCGCTTTGCTTCGTTTA	59.780	45.455	0.00	0.00	0.00	2.01
6425	6480	9.858247	CTCGCTTTGCTTCGTTTATATAAAATA	57.142	29.630	9.48	0.00	0.00	1.40
6434	6489	7.230849	TCGTTTATATAAAATAGAGCGGGGA	57.769	36.000	9.48	0.00	0.00	4.81
6456	6512	7.972832	GGAAAACCCCTTTCGATAAATTTTT	57.027	32.000	0.00	0.00	43.88	1.94
6490	6547	7.564793	AGGTTGTCTAGATAATTGTATGTGCA	58.435	34.615	5.13	0.00	0.00	4.57
6512	6569	2.283821	ATTTGCACACGGGGGCAT	60.284	55.556	19.23	0.00	40.17	4.40
6531	6588	7.256296	GGGGGCATCTATATTTTGTAAGCAATT	60.256	37.037	0.00	0.00	34.18	2.32
6533	6590	9.846248	GGGCATCTATATTTTGTAAGCAATTAG	57.154	33.333	0.00	0.00	34.18	1.73
6554	6614	7.840342	TTAGCGTGATTACCGGTAATTTTAA	57.160	32.000	34.40	23.97	41.61	1.52
6555	6615	6.930667	AGCGTGATTACCGGTAATTTTAAT	57.069	33.333	34.40	18.21	36.02	1.40
6734	6812	8.296713	TCCGAAGAAAGAAAATTCCATACAAAG	58.703	33.333	0.00	0.00	0.00	2.77
6791	6871	3.845178	TGTCGTCGCTGAATCTACATTT	58.155	40.909	0.00	0.00	0.00	2.32
6838	6941	1.517242	ACTCGCAGAAGAAAAGCAGG	58.483	50.000	0.00	0.00	34.09	4.85
6875	6980	4.558095	GCTGCTATATTGTGATTGGCCTTG	60.558	45.833	3.32	0.00	0.00	3.61
6891	6996	1.069022	CCTTGTGCATGAACGTCTTGG	60.069	52.381	0.00	0.00	0.00	3.61
6974	7079	2.361757	TCACAAATCAAACAGGCCTGTG	59.638	45.455	38.35	26.30	44.13	3.66
6985	7090	2.024655	ACAGGCCTGTGGAATCAATCAT	60.025	45.455	37.39	7.80	43.11	2.45
7058	7190	3.559597	CCCCATTGCCATTGTTGATGTTT	60.560	43.478	0.00	0.00	33.71	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
185	186	0.998928	ATGATGGGGCCCGCATTATA	59.001	50.000	22.25	14.26	37.16	0.98
707	709	1.856873	AAAGGGGCAGGTGGGATCA	60.857	57.895	0.00	0.00	0.00	2.92
817	819	2.356432	CCAATCCACAGATGAAGCAGGA	60.356	50.000	0.00	0.00	31.29	3.86
949	953	2.105477	TCAGCCAGCTTGTTTCTCTTCT	59.895	45.455	0.00	0.00	0.00	2.85
958	962	3.766545	TCCTAAAATTCAGCCAGCTTGT	58.233	40.909	0.00	0.00	0.00	3.16
995	999	8.547173	ACTTGTTGATCTCTCCTTTCATAATCT	58.453	33.333	0.00	0.00	0.00	2.40
1264	1272	5.428457	TCCATGTACACCATTTAGAGGACAT	59.572	40.000	0.00	0.00	0.00	3.06
1574	1583	2.169978	TCTCCATCATCCAGCAAGTCTG	59.830	50.000	0.00	0.00	42.49	3.51
2112	2125	6.418057	ACTTTTTCCATGATGTTTTGCCTA	57.582	33.333	0.00	0.00	0.00	3.93
2475	2489	4.218852	AGACTAAAAAGTCCTCCTCTCACG	59.781	45.833	2.00	0.00	39.50	4.35
2659	2674	5.131142	ACACTAGAACCAGCTAAGGCATTAT	59.869	40.000	0.00	0.00	41.70	1.28
2745	2760	6.715264	ACACTAAGTACCTCAAAAAGATTGGG	59.285	38.462	0.00	0.00	0.00	4.12
2992	3007	7.616935	AGTCATTGAACAATAATGTCCAGGAAT	59.383	33.333	0.00	0.00	39.40	3.01
3200	3215	6.360618	ACCCATTCCAGAATCAAGAAGTATC	58.639	40.000	0.00	0.00	0.00	2.24
3333	3348	6.926630	TTTAAATTGCCAAGTCCCAATAGT	57.073	33.333	0.00	0.00	31.82	2.12
3408	3423	6.548993	AGCTCTTTCTTTTTCTTCTTCATGGT	59.451	34.615	0.00	0.00	0.00	3.55
3538	3554	2.614259	TGGCAGTCTCTTCCTTCTTCT	58.386	47.619	0.00	0.00	0.00	2.85
4223	4243	8.501904	TCTTTTGATTTATGGACCTCATGGATA	58.498	33.333	0.00	0.00	37.30	2.59
4337	4357	5.388654	CATCTAATCCACTTAGCCCCAAAT	58.611	41.667	0.00	0.00	37.36	2.32
4488	4510	4.771590	AACATGCGAGAAAACACATCAT	57.228	36.364	0.00	0.00	0.00	2.45
5010	5032	3.834231	CACATTCCCCCAGAAAAAGTGAT	59.166	43.478	0.00	0.00	37.71	3.06
5216	5238	6.561519	AGACCACAGTATATTTGGCTTAGT	57.438	37.500	0.00	0.00	33.25	2.24
5258	5280	1.420138	GGTGACACCTTTCCAGAAGGA	59.580	52.381	17.84	0.00	39.81	3.36
5517	5540	2.431782	TGGCATGTCAGAGATGATTCGA	59.568	45.455	11.77	0.00	0.00	3.71
5631	5660	1.916181	CTCCAAATGGGGGTAGACACT	59.084	52.381	0.00	0.00	37.22	3.55
5658	5687	5.042463	TGTGAGGTACAACAATCTTCCAA	57.958	39.130	0.00	0.00	36.06	3.53
5882	5912	7.230108	TCCAGAAGGAAGATAATTCATTCATGC	59.770	37.037	14.93	0.00	42.23	4.06
5947	5987	4.383335	CCAAATGCTCCAAATGGTAGCAAT	60.383	41.667	21.84	15.12	44.89	3.56
6142	6182	1.105759	GCTGACTCCCATGCAATCCC	61.106	60.000	0.00	0.00	0.00	3.85
6159	6199	0.036199	CTCTTGCAAGCTCTCAGGCT	60.036	55.000	21.99	0.00	45.30	4.58
6243	6291	4.380867	CGGATACATTTGCCAGCTCTTTTT	60.381	41.667	0.00	0.00	0.00	1.94
6244	6292	3.129287	CGGATACATTTGCCAGCTCTTTT	59.871	43.478	0.00	0.00	0.00	2.27
6245	6293	2.684881	CGGATACATTTGCCAGCTCTTT	59.315	45.455	0.00	0.00	0.00	2.52
6246	6294	2.292267	CGGATACATTTGCCAGCTCTT	58.708	47.619	0.00	0.00	0.00	2.85
6247	6295	1.210478	ACGGATACATTTGCCAGCTCT	59.790	47.619	0.00	0.00	0.00	4.09
6248	6296	1.599542	GACGGATACATTTGCCAGCTC	59.400	52.381	0.00	0.00	0.00	4.09
6249	6297	1.065491	TGACGGATACATTTGCCAGCT	60.065	47.619	0.00	0.00	0.00	4.24
6250	6298	1.331756	CTGACGGATACATTTGCCAGC	59.668	52.381	0.00	0.00	0.00	4.85
6251	6299	2.632377	ACTGACGGATACATTTGCCAG	58.368	47.619	0.00	0.00	0.00	4.85
6252	6300	2.779755	ACTGACGGATACATTTGCCA	57.220	45.000	0.00	0.00	0.00	4.92
6253	6301	2.354821	GGAACTGACGGATACATTTGCC	59.645	50.000	0.00	0.00	0.00	4.52
6254	6302	2.354821	GGGAACTGACGGATACATTTGC	59.645	50.000	0.00	0.00	0.00	3.68
6255	6303	2.943033	GGGGAACTGACGGATACATTTG	59.057	50.000	0.00	0.00	0.00	2.32
6256	6304	2.844348	AGGGGAACTGACGGATACATTT	59.156	45.455	0.00	0.00	0.00	2.32
6257	6305	2.478292	AGGGGAACTGACGGATACATT	58.522	47.619	0.00	0.00	0.00	2.71
6258	6306	2.176247	AGGGGAACTGACGGATACAT	57.824	50.000	0.00	0.00	0.00	2.29
6259	6307	3.703804	AGGGGAACTGACGGATACA	57.296	52.632	0.00	0.00	0.00	2.29
6302	6354	2.103042	GCGTTCTGAGGAAGCGCAT	61.103	57.895	11.47	0.00	43.80	4.73
6306	6358	4.996976	TCAGCGTTCTGAGGAAGC	57.003	55.556	0.00	0.00	43.95	3.86
6512	6569	9.320352	TCACGCTAATTGCTTACAAAATATAGA	57.680	29.630	0.00	0.00	39.77	1.98
6531	6588	9.539825	TTATTAAAATTACCGGTAATCACGCTA	57.460	29.630	34.13	21.42	34.90	4.26
6533	6590	9.109533	CATTATTAAAATTACCGGTAATCACGC	57.890	33.333	34.13	0.00	34.90	5.34
6568	6628	7.341512	TCAATTGTCAATGCTGGTATGGAATTA	59.658	33.333	5.13	0.00	0.00	1.40
6630	6691	4.991056	CCAACCGAGTCTACATATTCATGG	59.009	45.833	0.00	0.00	36.39	3.66
6644	6705	3.832615	ACTAAGTTGAACCAACCGAGT	57.167	42.857	6.24	7.16	44.49	4.18
6741	6819	9.692749	CGCTTCTGTCAGGACTATTTTTATATA	57.307	33.333	0.00	0.00	0.00	0.86
6745	6823	5.867716	GTCGCTTCTGTCAGGACTATTTTTA	59.132	40.000	0.00	0.00	0.00	1.52
6749	6827	3.093057	AGTCGCTTCTGTCAGGACTATT	58.907	45.455	7.48	0.00	36.28	1.73
6750	6828	2.425312	CAGTCGCTTCTGTCAGGACTAT	59.575	50.000	8.59	0.00	36.28	2.12
6774	6854	4.542662	ATGCAAATGTAGATTCAGCGAC	57.457	40.909	0.00	0.00	0.00	5.19
6791	6871	3.479489	TCTTTGCTTCAGTCTGAATGCA	58.521	40.909	24.03	24.03	38.10	3.96
6838	6941	6.830873	ATATAGCAGCTTTGATTGATTCCC	57.169	37.500	0.00	0.00	0.00	3.97
6875	6980	1.601903	TCAACCAAGACGTTCATGCAC	59.398	47.619	0.00	0.00	0.00	4.57
6913	7018	9.196552	CCTTCCATTTTTGACAATTCTAGTTTC	57.803	33.333	0.00	0.00	0.00	2.78
7058	7190	2.192861	CGCCAAGGCCAACAAGACA	61.193	57.895	5.01	0.00	37.98	3.41
7178	7316	2.508526	GTCATGCTCTGGTTCCACTTT	58.491	47.619	0.00	0.00	0.00	2.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.