Multiple sequence alignment - TraesCS4A01G273700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G273700 chr4A 100.000 2689 0 0 414 3102 584073529 584070841 0.000000e+00 4966.0
1 TraesCS4A01G273700 chr4A 100.000 90 0 0 1 90 584073942 584073853 1.910000e-37 167.0
2 TraesCS4A01G273700 chr4A 94.000 100 3 3 695 794 207366886 207366982 6.930000e-32 148.0
3 TraesCS4A01G273700 chr4D 91.525 2360 151 17 785 3102 16305405 16307757 0.000000e+00 3205.0
4 TraesCS4A01G273700 chr4D 91.441 2360 153 17 785 3102 16345688 16348040 0.000000e+00 3193.0
5 TraesCS4A01G273700 chr4D 91.314 2360 156 18 785 3102 16264316 16266668 0.000000e+00 3177.0
6 TraesCS4A01G273700 chr4D 95.746 1387 53 3 785 2165 16330799 16332185 0.000000e+00 2230.0
7 TraesCS4A01G273700 chr4D 90.347 1616 135 15 785 2384 16326286 16327896 0.000000e+00 2100.0
8 TraesCS4A01G273700 chr4D 90.037 1616 140 15 785 2384 16301047 16302657 0.000000e+00 2073.0
9 TraesCS4A01G273700 chr4D 85.410 1549 192 22 862 2384 16260066 16261606 0.000000e+00 1578.0
10 TraesCS4A01G273700 chr4D 93.758 817 39 4 2296 3101 16332189 16333004 0.000000e+00 1216.0
11 TraesCS4A01G273700 chr4D 83.433 670 81 18 790 1453 16252092 16252737 2.060000e-166 595.0
12 TraesCS4A01G273700 chr4D 93.724 239 15 0 464 702 16330562 16330800 2.940000e-95 359.0
13 TraesCS4A01G273700 chr4D 93.305 239 16 0 464 702 16264079 16264317 1.370000e-93 353.0
14 TraesCS4A01G273700 chr4D 93.305 239 16 0 464 702 16305168 16305406 1.370000e-93 353.0
15 TraesCS4A01G273700 chr4D 93.305 239 16 0 464 702 16345451 16345689 1.370000e-93 353.0
16 TraesCS4A01G273700 chr4D 92.887 239 17 0 464 702 16300810 16301048 6.370000e-92 348.0
17 TraesCS4A01G273700 chr4D 92.887 239 17 0 464 702 16326049 16326287 6.370000e-92 348.0
18 TraesCS4A01G273700 chr4B 91.528 2349 150 15 785 3102 28168916 28171246 0.000000e+00 3190.0
19 TraesCS4A01G273700 chr4B 88.129 1668 152 28 785 2431 28185537 28187179 0.000000e+00 1941.0
20 TraesCS4A01G273700 chr4B 87.957 1669 153 30 785 2431 28174430 28176072 0.000000e+00 1925.0
21 TraesCS4A01G273700 chr4B 87.564 587 60 11 2526 3102 28176297 28176880 0.000000e+00 667.0
22 TraesCS4A01G273700 chr4B 87.543 586 62 10 2526 3102 28183324 28183907 0.000000e+00 667.0
23 TraesCS4A01G273700 chr4B 87.201 586 64 10 2526 3102 28187405 28187988 0.000000e+00 656.0
24 TraesCS4A01G273700 chr4B 91.632 239 20 0 464 702 28168679 28168917 6.410000e-87 331.0
25 TraesCS4A01G273700 chr4B 98.889 90 1 0 1 90 425817668 425817757 8.900000e-36 161.0
26 TraesCS4A01G273700 chr4B 100.000 67 0 0 24 90 334323479 334323413 1.170000e-24 124.0
27 TraesCS4A01G273700 chr4B 93.651 63 4 0 2449 2511 28176193 28176255 9.160000e-16 95.3
28 TraesCS4A01G273700 chr4B 93.651 63 4 0 2449 2511 28183220 28183282 9.160000e-16 95.3
29 TraesCS4A01G273700 chr4B 93.651 63 4 0 2449 2511 28187301 28187363 9.160000e-16 95.3
30 TraesCS4A01G273700 chr4B 100.000 46 0 0 414 459 334323389 334323344 5.510000e-13 86.1
31 TraesCS4A01G273700 chr4B 96.000 50 2 0 414 463 425817782 425817831 7.130000e-12 82.4
32 TraesCS4A01G273700 chr6B 100.000 90 0 0 1 90 14515089 14515178 1.910000e-37 167.0
33 TraesCS4A01G273700 chr6B 97.778 90 0 1 1 90 619533963 619533876 1.490000e-33 154.0
34 TraesCS4A01G273700 chr6B 96.429 56 1 1 414 469 619533852 619533798 1.180000e-14 91.6
35 TraesCS4A01G273700 chrUn 98.889 90 1 0 1 90 117308062 117307973 8.900000e-36 161.0
36 TraesCS4A01G273700 chrUn 97.959 49 0 1 414 461 117307948 117307900 1.980000e-12 84.2
37 TraesCS4A01G273700 chr3B 98.889 90 1 0 1 90 769056743 769056654 8.900000e-36 161.0
38 TraesCS4A01G273700 chr3B 95.745 94 3 1 701 793 261980716 261980623 1.930000e-32 150.0
39 TraesCS4A01G273700 chr3B 92.308 104 6 2 701 803 792892597 792892495 2.490000e-31 147.0
40 TraesCS4A01G273700 chr3B 100.000 49 0 0 414 462 769056630 769056582 1.180000e-14 91.6
41 TraesCS4A01G273700 chr3B 92.727 55 4 0 416 470 683431193 683431139 2.560000e-11 80.5
42 TraesCS4A01G273700 chr2A 98.876 89 1 0 701 789 769662207 769662119 3.200000e-35 159.0
43 TraesCS4A01G273700 chr2A 97.753 89 2 0 700 788 747677916 747678004 1.490000e-33 154.0
44 TraesCS4A01G273700 chr5B 96.667 90 3 0 1 90 125423454 125423365 1.930000e-32 150.0
45 TraesCS4A01G273700 chr5B 98.000 50 1 0 414 463 125423341 125423292 1.530000e-13 87.9
46 TraesCS4A01G273700 chr6A 95.652 92 4 0 696 787 369574548 369574639 6.930000e-32 148.0
47 TraesCS4A01G273700 chr2B 92.308 104 6 2 701 803 81171399 81171501 2.490000e-31 147.0
48 TraesCS4A01G273700 chr2B 93.878 98 5 1 692 789 182712509 182712413 2.490000e-31 147.0
49 TraesCS4A01G273700 chr2B 88.119 101 1 1 1 90 530694650 530694750 3.270000e-20 110.0
50 TraesCS4A01G273700 chr1B 92.308 104 6 2 701 803 420918074 420918176 2.490000e-31 147.0
51 TraesCS4A01G273700 chr1B 97.917 48 1 0 416 463 99079036 99078989 1.980000e-12 84.2
52 TraesCS4A01G273700 chr1A 97.917 48 1 0 416 463 497748541 497748494 1.980000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G273700 chr4A 584070841 584073942 3101 True 2566.500000 4966 100.000000 1 3102 2 chr4A.!!$R1 3101
1 TraesCS4A01G273700 chr4D 16345451 16348040 2589 False 1773.000000 3193 92.373000 464 3102 2 chr4D.!!$F5 2638
2 TraesCS4A01G273700 chr4D 16260066 16266668 6602 False 1702.666667 3177 90.009667 464 3102 3 chr4D.!!$F2 2638
3 TraesCS4A01G273700 chr4D 16300810 16307757 6947 False 1494.750000 3205 91.938500 464 3102 4 chr4D.!!$F3 2638
4 TraesCS4A01G273700 chr4D 16326049 16333004 6955 False 1250.600000 2230 93.292400 464 3101 5 chr4D.!!$F4 2637
5 TraesCS4A01G273700 chr4D 16252092 16252737 645 False 595.000000 595 83.433000 790 1453 1 chr4D.!!$F1 663
6 TraesCS4A01G273700 chr4B 28168679 28176880 8201 False 1241.660000 3190 90.466400 464 3102 5 chr4B.!!$F1 2638
7 TraesCS4A01G273700 chr4B 28183220 28187988 4768 False 690.920000 1941 90.035000 785 3102 5 chr4B.!!$F2 2317

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.040425 GTTAGTTGTTGCGCAGGTGG 60.040 55.0 11.31 0.0 0.00 4.61 F
58 59 0.096454 CGCTGTGTGCTGATGTGATG 59.904 55.0 0.00 0.0 40.11 3.07 F
59 60 1.162698 GCTGTGTGCTGATGTGATGT 58.837 50.0 0.00 0.0 38.95 3.06 F
1259 6812 1.232119 GGTGTCAACCAGTTTACCGG 58.768 55.0 0.00 0.0 46.75 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1850 7407 0.400525 ATGACATCCCCTCCGTCCAT 60.401 55.000 0.0 0.00 0.00 3.41 R
1881 7438 2.038813 TCATCACCCCGCCAGAGA 59.961 61.111 0.0 0.00 0.00 3.10 R
2046 7603 2.288825 CCACACATACCACTCTTGTCGT 60.289 50.000 0.0 0.00 0.00 4.34 R
2700 8399 0.389948 GTGTAGTGTTAGCGCTGCCT 60.390 55.000 22.9 12.35 37.09 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.205820 GTCGGGTTAGTTGTTGCGC 59.794 57.895 0.00 0.00 0.00 6.09
22 23 1.227586 TCGGGTTAGTTGTTGCGCA 60.228 52.632 5.66 5.66 0.00 6.09
23 24 1.206578 CGGGTTAGTTGTTGCGCAG 59.793 57.895 11.31 0.00 0.00 5.18
24 25 1.579429 GGGTTAGTTGTTGCGCAGG 59.421 57.895 11.31 0.00 0.00 4.85
27 28 0.040425 GTTAGTTGTTGCGCAGGTGG 60.040 55.000 11.31 0.00 0.00 4.61
28 29 0.179043 TTAGTTGTTGCGCAGGTGGA 60.179 50.000 11.31 0.00 0.00 4.02
29 30 0.882927 TAGTTGTTGCGCAGGTGGAC 60.883 55.000 11.31 6.15 0.00 4.02
30 31 2.186826 GTTGTTGCGCAGGTGGACT 61.187 57.895 11.31 0.00 0.00 3.85
38 39 4.742201 CAGGTGGACTGTCGGCCG 62.742 72.222 22.12 22.12 42.42 6.13
53 54 4.156622 CCGCGCTGTGTGCTGATG 62.157 66.667 5.56 0.00 40.11 3.07
54 55 3.417224 CGCGCTGTGTGCTGATGT 61.417 61.111 5.56 0.00 40.11 3.06
55 56 2.175078 GCGCTGTGTGCTGATGTG 59.825 61.111 0.00 0.00 40.11 3.21
56 57 2.319841 GCGCTGTGTGCTGATGTGA 61.320 57.895 0.00 0.00 40.11 3.58
57 58 1.642037 GCGCTGTGTGCTGATGTGAT 61.642 55.000 0.00 0.00 40.11 3.06
58 59 0.096454 CGCTGTGTGCTGATGTGATG 59.904 55.000 0.00 0.00 40.11 3.07
59 60 1.162698 GCTGTGTGCTGATGTGATGT 58.837 50.000 0.00 0.00 38.95 3.06
60 61 1.538512 GCTGTGTGCTGATGTGATGTT 59.461 47.619 0.00 0.00 38.95 2.71
61 62 2.743664 GCTGTGTGCTGATGTGATGTTA 59.256 45.455 0.00 0.00 38.95 2.41
62 63 3.376234 GCTGTGTGCTGATGTGATGTTAT 59.624 43.478 0.00 0.00 38.95 1.89
63 64 4.729746 GCTGTGTGCTGATGTGATGTTATG 60.730 45.833 0.00 0.00 38.95 1.90
64 65 4.325972 TGTGTGCTGATGTGATGTTATGT 58.674 39.130 0.00 0.00 0.00 2.29
65 66 5.486526 TGTGTGCTGATGTGATGTTATGTA 58.513 37.500 0.00 0.00 0.00 2.29
66 67 5.581874 TGTGTGCTGATGTGATGTTATGTAG 59.418 40.000 0.00 0.00 0.00 2.74
67 68 4.571984 TGTGCTGATGTGATGTTATGTAGC 59.428 41.667 0.00 0.00 0.00 3.58
68 69 3.803778 TGCTGATGTGATGTTATGTAGCG 59.196 43.478 0.00 0.00 0.00 4.26
69 70 3.804325 GCTGATGTGATGTTATGTAGCGT 59.196 43.478 0.00 0.00 0.00 5.07
70 71 4.271049 GCTGATGTGATGTTATGTAGCGTT 59.729 41.667 0.00 0.00 0.00 4.84
71 72 5.220662 GCTGATGTGATGTTATGTAGCGTTT 60.221 40.000 0.00 0.00 0.00 3.60
72 73 6.019075 GCTGATGTGATGTTATGTAGCGTTTA 60.019 38.462 0.00 0.00 0.00 2.01
73 74 7.465379 GCTGATGTGATGTTATGTAGCGTTTAA 60.465 37.037 0.00 0.00 0.00 1.52
74 75 8.257830 TGATGTGATGTTATGTAGCGTTTAAA 57.742 30.769 0.00 0.00 0.00 1.52
75 76 8.888716 TGATGTGATGTTATGTAGCGTTTAAAT 58.111 29.630 0.00 0.00 0.00 1.40
76 77 9.370126 GATGTGATGTTATGTAGCGTTTAAATC 57.630 33.333 0.00 0.00 0.00 2.17
77 78 8.487313 TGTGATGTTATGTAGCGTTTAAATCT 57.513 30.769 0.00 0.00 0.00 2.40
78 79 8.941977 TGTGATGTTATGTAGCGTTTAAATCTT 58.058 29.630 0.00 0.00 0.00 2.40
79 80 9.769093 GTGATGTTATGTAGCGTTTAAATCTTT 57.231 29.630 0.00 0.00 0.00 2.52
80 81 9.767684 TGATGTTATGTAGCGTTTAAATCTTTG 57.232 29.630 0.00 0.00 0.00 2.77
81 82 9.769093 GATGTTATGTAGCGTTTAAATCTTTGT 57.231 29.630 0.00 0.00 0.00 2.83
87 88 9.769093 ATGTAGCGTTTAAATCTTTGTAACATC 57.231 29.630 0.00 0.00 0.00 3.06
88 89 8.775527 TGTAGCGTTTAAATCTTTGTAACATCA 58.224 29.630 0.00 0.00 0.00 3.07
89 90 9.601971 GTAGCGTTTAAATCTTTGTAACATCAA 57.398 29.630 0.00 0.00 0.00 2.57
442 443 9.841880 TTCTTCTATATAAGATGATACGCACAC 57.158 33.333 1.75 0.00 37.99 3.82
443 444 9.232473 TCTTCTATATAAGATGATACGCACACT 57.768 33.333 0.00 0.00 34.39 3.55
444 445 9.497030 CTTCTATATAAGATGATACGCACACTC 57.503 37.037 0.00 0.00 33.05 3.51
445 446 7.685594 TCTATATAAGATGATACGCACACTCG 58.314 38.462 0.00 0.00 0.00 4.18
446 447 2.941453 AAGATGATACGCACACTCGT 57.059 45.000 0.00 0.00 45.49 4.18
447 448 2.194800 AGATGATACGCACACTCGTG 57.805 50.000 0.00 0.00 46.56 4.35
456 457 3.010088 CACACTCGTGCGTATTCGA 57.990 52.632 0.00 0.00 36.06 3.71
509 5076 9.768662 GGACCATTTTAATATAAGTACTTCCGA 57.231 33.333 12.39 0.00 0.00 4.55
558 5125 6.017109 GCTGTTCCTTCTCTCATTGTTTTGTA 60.017 38.462 0.00 0.00 0.00 2.41
629 5196 9.626045 ACTTCTTTTTAAACAAGAGTTGAACAG 57.374 29.630 0.00 6.21 38.17 3.16
702 5269 8.443937 CAGAGTTGGATTAAGCTAACAAACTAC 58.556 37.037 20.05 6.12 32.39 2.73
704 5271 8.549338 AGTTGGATTAAGCTAACAAACTACTC 57.451 34.615 20.05 0.00 32.39 2.59
705 5272 7.606839 AGTTGGATTAAGCTAACAAACTACTCC 59.393 37.037 20.05 0.00 32.39 3.85
706 5273 6.412214 TGGATTAAGCTAACAAACTACTCCC 58.588 40.000 0.00 0.00 0.00 4.30
707 5274 6.214819 TGGATTAAGCTAACAAACTACTCCCT 59.785 38.462 0.00 0.00 0.00 4.20
708 5275 6.762187 GGATTAAGCTAACAAACTACTCCCTC 59.238 42.308 0.00 0.00 0.00 4.30
709 5276 6.930068 TTAAGCTAACAAACTACTCCCTCT 57.070 37.500 0.00 0.00 0.00 3.69
710 5277 4.810191 AGCTAACAAACTACTCCCTCTG 57.190 45.455 0.00 0.00 0.00 3.35
711 5278 4.161102 AGCTAACAAACTACTCCCTCTGT 58.839 43.478 0.00 0.00 0.00 3.41
712 5279 4.593634 AGCTAACAAACTACTCCCTCTGTT 59.406 41.667 0.00 0.00 0.00 3.16
713 5280 4.930405 GCTAACAAACTACTCCCTCTGTTC 59.070 45.833 0.00 0.00 0.00 3.18
715 5282 3.314693 ACAAACTACTCCCTCTGTTCCA 58.685 45.455 0.00 0.00 0.00 3.53
716 5283 3.714798 ACAAACTACTCCCTCTGTTCCAA 59.285 43.478 0.00 0.00 0.00 3.53
717 5284 4.165372 ACAAACTACTCCCTCTGTTCCAAA 59.835 41.667 0.00 0.00 0.00 3.28
721 5288 6.301169 ACTACTCCCTCTGTTCCAAAATAG 57.699 41.667 0.00 0.00 0.00 1.73
722 5289 6.023603 ACTACTCCCTCTGTTCCAAAATAGA 58.976 40.000 0.00 0.00 32.42 1.98
723 5290 6.674419 ACTACTCCCTCTGTTCCAAAATAGAT 59.326 38.462 0.00 0.00 32.88 1.98
724 5291 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
725 5292 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
727 5294 4.884164 CCCTCTGTTCCAAAATAGATGACC 59.116 45.833 0.00 0.00 32.88 4.02
734 5301 6.553100 TGTTCCAAAATAGATGACCCAACTTT 59.447 34.615 0.00 0.00 0.00 2.66
735 5302 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
736 5303 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
737 5304 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
738 5305 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
739 5306 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
740 5307 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
741 5308 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
744 5311 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
746 5313 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
747 5314 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
749 5316 6.358991 ACCCAACTTTGTACTAAAGTTAGCA 58.641 36.000 23.56 0.00 45.57 3.49
750 5317 6.261603 ACCCAACTTTGTACTAAAGTTAGCAC 59.738 38.462 23.56 0.00 45.57 4.40
752 5319 7.201750 CCCAACTTTGTACTAAAGTTAGCACAA 60.202 37.037 23.56 11.25 45.57 3.33
753 5320 8.185505 CCAACTTTGTACTAAAGTTAGCACAAA 58.814 33.333 23.56 20.59 46.64 2.83
758 5325 8.495361 TTGTACTAAAGTTAGCACAAAGTTGA 57.505 30.769 12.43 0.00 41.56 3.18
759 5326 8.138365 TGTACTAAAGTTAGCACAAAGTTGAG 57.862 34.615 2.29 0.00 34.88 3.02
760 5327 7.767198 TGTACTAAAGTTAGCACAAAGTTGAGT 59.233 33.333 2.29 8.36 37.31 3.41
761 5328 7.247929 ACTAAAGTTAGCACAAAGTTGAGTC 57.752 36.000 0.00 0.00 30.60 3.36
762 5329 6.821665 ACTAAAGTTAGCACAAAGTTGAGTCA 59.178 34.615 0.00 0.00 30.60 3.41
764 5331 7.801716 AAAGTTAGCACAAAGTTGAGTCATA 57.198 32.000 0.00 0.00 0.00 2.15
766 5333 9.502091 AAAGTTAGCACAAAGTTGAGTCATATA 57.498 29.630 0.00 0.00 0.00 0.86
767 5334 9.672673 AAGTTAGCACAAAGTTGAGTCATATAT 57.327 29.630 0.00 0.00 0.00 0.86
768 5335 9.672673 AGTTAGCACAAAGTTGAGTCATATATT 57.327 29.630 0.00 0.00 0.00 1.28
772 5339 8.246180 AGCACAAAGTTGAGTCATATATTTTGG 58.754 33.333 12.94 6.11 0.00 3.28
776 5343 9.277565 CAAAGTTGAGTCATATATTTTGGAACG 57.722 33.333 0.00 0.00 0.00 3.95
777 5344 7.553881 AGTTGAGTCATATATTTTGGAACGG 57.446 36.000 0.00 0.00 0.00 4.44
779 5346 7.495934 AGTTGAGTCATATATTTTGGAACGGAG 59.504 37.037 0.00 0.00 0.00 4.63
780 5347 6.288294 TGAGTCATATATTTTGGAACGGAGG 58.712 40.000 0.00 0.00 0.00 4.30
783 5350 5.701290 GTCATATATTTTGGAACGGAGGGAG 59.299 44.000 0.00 0.00 0.00 4.30
784 5351 5.368523 TCATATATTTTGGAACGGAGGGAGT 59.631 40.000 0.00 0.00 0.00 3.85
785 5352 6.555738 TCATATATTTTGGAACGGAGGGAGTA 59.444 38.462 0.00 0.00 0.00 2.59
877 6418 3.131755 TCACACATCATCCTAGAGCACAG 59.868 47.826 0.00 0.00 0.00 3.66
878 6419 3.102972 ACACATCATCCTAGAGCACAGT 58.897 45.455 0.00 0.00 0.00 3.55
958 6500 1.748493 GTTGACAGACCAAAGCACCAA 59.252 47.619 0.00 0.00 0.00 3.67
1136 6689 2.156098 GTGGATGGCGAAGTTTAACCA 58.844 47.619 0.00 0.00 36.43 3.67
1259 6812 1.232119 GGTGTCAACCAGTTTACCGG 58.768 55.000 0.00 0.00 46.75 5.28
1335 6888 4.858680 GCTAGGGCTCCAACCGGC 62.859 72.222 0.00 0.00 35.22 6.13
1401 6954 2.852075 TGGAGGACCAAGGGCGTT 60.852 61.111 0.00 0.00 43.91 4.84
1532 7085 2.569404 AGGTTGTTGTTGGGCTTTTTCA 59.431 40.909 0.00 0.00 0.00 2.69
1638 7195 4.408821 TGTGGATCAGGGGTGCGC 62.409 66.667 0.00 0.00 0.00 6.09
1726 7283 3.519510 ACTACCCATACACTGCACAAGAT 59.480 43.478 0.00 0.00 0.00 2.40
1780 7337 2.102578 GTTGCAACCATCAAGGGCTAT 58.897 47.619 19.15 0.00 43.89 2.97
1799 7356 3.918253 GAGGATGTGCCCGCCAACA 62.918 63.158 0.00 0.00 37.37 3.33
1850 7407 3.314307 ACCAGCCTGTATCAGTAGCTA 57.686 47.619 0.00 0.00 30.26 3.32
1880 7437 4.536765 AGGGGATGTCATATTTCAACACC 58.463 43.478 0.00 0.00 31.42 4.16
1881 7438 4.230502 AGGGGATGTCATATTTCAACACCT 59.769 41.667 3.20 3.20 35.84 4.00
2017 7574 2.680352 ACGACATGGGGCGAGAGT 60.680 61.111 11.05 0.00 0.00 3.24
2046 7603 7.937700 ACCTCAGAATGGAGAAGGATATTTA 57.062 36.000 0.00 0.00 37.05 1.40
2092 7649 0.331278 CCATGCAACCTTCCTACCCA 59.669 55.000 0.00 0.00 0.00 4.51
2182 7744 8.314021 TCTATATATGTACCTTCCATTGCACTG 58.686 37.037 0.00 0.00 0.00 3.66
2184 7746 0.447801 GTACCTTCCATTGCACTGCG 59.552 55.000 0.00 0.00 0.00 5.18
2191 7753 3.932545 TCCATTGCACTGCGTTATTTT 57.067 38.095 0.00 0.00 0.00 1.82
2192 7754 3.832276 TCCATTGCACTGCGTTATTTTC 58.168 40.909 0.00 0.00 0.00 2.29
2195 7757 0.519519 TGCACTGCGTTATTTTCCGG 59.480 50.000 0.00 0.00 0.00 5.14
2305 7867 6.543831 CGAAAATCCCTCTTGTTAGAATCCAT 59.456 38.462 0.00 0.00 0.00 3.41
2334 7899 7.893302 ACTGATTGGACCCAGATTTGTTATTTA 59.107 33.333 3.51 0.00 34.65 1.40
2402 7967 9.330063 ACACATCCCGCATATATTAAAGATATG 57.670 33.333 12.98 12.98 39.36 1.78
2493 8163 2.359850 AACGCGACATGTGGGCAT 60.360 55.556 15.93 0.00 35.32 4.40
2547 8244 5.309806 ACACACCTAGAATACTTTTGGGACT 59.690 40.000 0.00 0.00 0.00 3.85
2700 8399 8.567948 CAAAGAAATCTAGGCTAAAACAAGACA 58.432 33.333 0.00 0.00 0.00 3.41
2734 8433 4.040461 ACACTACACAAGGAATGCACTACT 59.960 41.667 0.00 0.00 0.00 2.57
2799 8498 2.038557 GGACCACAACTAGAAGCTCCAA 59.961 50.000 0.00 0.00 0.00 3.53
2819 8524 4.142049 CCAAAAAGTCTACAAGCAAACCCA 60.142 41.667 0.00 0.00 0.00 4.51
2941 8646 0.038166 GGACCAAGGTGGCTGATGAA 59.962 55.000 0.00 0.00 42.67 2.57
2952 8662 5.104360 AGGTGGCTGATGAAATAGTGTATGT 60.104 40.000 0.00 0.00 0.00 2.29
2953 8663 5.590259 GGTGGCTGATGAAATAGTGTATGTT 59.410 40.000 0.00 0.00 0.00 2.71
3061 8771 4.211125 CACCATGAGACCTAAGCTCTCTA 58.789 47.826 0.00 0.00 35.99 2.43
3066 8776 6.211184 CCATGAGACCTAAGCTCTCTATTGAT 59.789 42.308 0.00 0.00 35.99 2.57
3068 8778 5.010516 TGAGACCTAAGCTCTCTATTGATGC 59.989 44.000 0.00 0.00 35.99 3.91
3077 8788 4.324874 GCTCTCTATTGATGCCCCCAATAT 60.325 45.833 0.00 0.00 36.33 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.723003 CGCAACAACTAACCCGACTAC 59.277 52.381 0.00 0.00 0.00 2.73
3 4 1.205820 GCGCAACAACTAACCCGAC 59.794 57.895 0.30 0.00 0.00 4.79
6 7 1.170290 ACCTGCGCAACAACTAACCC 61.170 55.000 13.05 0.00 0.00 4.11
7 8 0.040425 CACCTGCGCAACAACTAACC 60.040 55.000 13.05 0.00 0.00 2.85
8 9 0.040425 CCACCTGCGCAACAACTAAC 60.040 55.000 13.05 0.00 0.00 2.34
9 10 0.179043 TCCACCTGCGCAACAACTAA 60.179 50.000 13.05 0.00 0.00 2.24
10 11 0.882927 GTCCACCTGCGCAACAACTA 60.883 55.000 13.05 0.00 0.00 2.24
11 12 2.186826 GTCCACCTGCGCAACAACT 61.187 57.895 13.05 0.00 0.00 3.16
12 13 2.186826 AGTCCACCTGCGCAACAAC 61.187 57.895 13.05 5.75 0.00 3.32
13 14 2.186160 CAGTCCACCTGCGCAACAA 61.186 57.895 13.05 0.00 33.59 2.83
14 15 2.591429 CAGTCCACCTGCGCAACA 60.591 61.111 13.05 0.00 33.59 3.33
15 16 2.591715 ACAGTCCACCTGCGCAAC 60.592 61.111 13.05 6.26 45.68 4.17
16 17 2.280797 GACAGTCCACCTGCGCAA 60.281 61.111 13.05 0.00 45.68 4.85
17 18 4.662961 CGACAGTCCACCTGCGCA 62.663 66.667 10.98 10.98 45.68 6.09
40 41 1.162698 ACATCACATCAGCACACAGC 58.837 50.000 0.00 0.00 46.19 4.40
41 42 4.393990 ACATAACATCACATCAGCACACAG 59.606 41.667 0.00 0.00 0.00 3.66
42 43 4.325972 ACATAACATCACATCAGCACACA 58.674 39.130 0.00 0.00 0.00 3.72
43 44 4.952262 ACATAACATCACATCAGCACAC 57.048 40.909 0.00 0.00 0.00 3.82
44 45 4.571984 GCTACATAACATCACATCAGCACA 59.428 41.667 0.00 0.00 0.00 4.57
45 46 4.318333 CGCTACATAACATCACATCAGCAC 60.318 45.833 0.00 0.00 0.00 4.40
46 47 3.803778 CGCTACATAACATCACATCAGCA 59.196 43.478 0.00 0.00 0.00 4.41
47 48 3.804325 ACGCTACATAACATCACATCAGC 59.196 43.478 0.00 0.00 0.00 4.26
48 49 5.973651 AACGCTACATAACATCACATCAG 57.026 39.130 0.00 0.00 0.00 2.90
49 50 7.835634 TTAAACGCTACATAACATCACATCA 57.164 32.000 0.00 0.00 0.00 3.07
50 51 9.370126 GATTTAAACGCTACATAACATCACATC 57.630 33.333 0.00 0.00 0.00 3.06
51 52 9.109393 AGATTTAAACGCTACATAACATCACAT 57.891 29.630 0.00 0.00 0.00 3.21
52 53 8.487313 AGATTTAAACGCTACATAACATCACA 57.513 30.769 0.00 0.00 0.00 3.58
53 54 9.769093 AAAGATTTAAACGCTACATAACATCAC 57.231 29.630 0.00 0.00 0.00 3.06
54 55 9.767684 CAAAGATTTAAACGCTACATAACATCA 57.232 29.630 0.00 0.00 0.00 3.07
55 56 9.769093 ACAAAGATTTAAACGCTACATAACATC 57.231 29.630 0.00 0.00 0.00 3.06
61 62 9.769093 GATGTTACAAAGATTTAAACGCTACAT 57.231 29.630 0.00 0.00 0.00 2.29
62 63 8.775527 TGATGTTACAAAGATTTAAACGCTACA 58.224 29.630 0.00 0.00 0.00 2.74
63 64 9.601971 TTGATGTTACAAAGATTTAAACGCTAC 57.398 29.630 0.00 0.00 0.00 3.58
416 417 9.841880 GTGTGCGTATCATCTTATATAGAAGAA 57.158 33.333 13.50 0.00 38.89 2.52
417 418 9.232473 AGTGTGCGTATCATCTTATATAGAAGA 57.768 33.333 12.01 12.01 39.71 2.87
418 419 9.497030 GAGTGTGCGTATCATCTTATATAGAAG 57.503 37.037 0.41 0.41 36.22 2.85
419 420 8.175716 CGAGTGTGCGTATCATCTTATATAGAA 58.824 37.037 0.00 0.00 36.22 2.10
420 421 7.333672 ACGAGTGTGCGTATCATCTTATATAGA 59.666 37.037 0.00 0.00 43.61 1.98
421 422 7.426743 CACGAGTGTGCGTATCATCTTATATAG 59.573 40.741 0.00 0.00 43.59 1.31
422 423 7.241376 CACGAGTGTGCGTATCATCTTATATA 58.759 38.462 0.00 0.00 43.59 0.86
423 424 6.086871 CACGAGTGTGCGTATCATCTTATAT 58.913 40.000 0.00 0.00 43.59 0.86
424 425 5.449304 CACGAGTGTGCGTATCATCTTATA 58.551 41.667 0.00 0.00 43.59 0.98
425 426 4.290969 CACGAGTGTGCGTATCATCTTAT 58.709 43.478 0.00 0.00 43.59 1.73
426 427 3.691498 CACGAGTGTGCGTATCATCTTA 58.309 45.455 0.00 0.00 43.59 2.10
427 428 2.530177 CACGAGTGTGCGTATCATCTT 58.470 47.619 0.00 0.00 43.59 2.40
428 429 2.194800 CACGAGTGTGCGTATCATCT 57.805 50.000 0.00 0.00 43.59 2.90
438 439 0.907837 CTCGAATACGCACGAGTGTG 59.092 55.000 14.40 14.40 46.90 3.82
439 440 3.307829 CTCGAATACGCACGAGTGT 57.692 52.632 4.12 4.12 46.90 3.55
443 444 3.311106 ACTTTTTCTCGAATACGCACGA 58.689 40.909 0.00 0.00 39.58 4.35
444 445 3.700130 ACTTTTTCTCGAATACGCACG 57.300 42.857 0.00 0.00 39.58 5.34
445 446 7.955864 AGATAAAACTTTTTCTCGAATACGCAC 59.044 33.333 0.00 0.00 39.58 5.34
446 447 8.025243 AGATAAAACTTTTTCTCGAATACGCA 57.975 30.769 0.00 0.00 39.58 5.24
447 448 8.876248 AAGATAAAACTTTTTCTCGAATACGC 57.124 30.769 0.00 0.00 39.58 4.42
451 452 9.750125 AAGCAAAGATAAAACTTTTTCTCGAAT 57.250 25.926 0.00 0.00 37.91 3.34
452 453 9.581099 AAAGCAAAGATAAAACTTTTTCTCGAA 57.419 25.926 0.00 0.00 37.91 3.71
453 454 9.581099 AAAAGCAAAGATAAAACTTTTTCTCGA 57.419 25.926 0.00 0.00 37.28 4.04
454 455 9.623687 CAAAAGCAAAGATAAAACTTTTTCTCG 57.376 29.630 0.00 0.00 38.21 4.04
458 459 9.838975 CCAACAAAAGCAAAGATAAAACTTTTT 57.161 25.926 0.00 0.00 38.21 1.94
459 460 9.225436 TCCAACAAAAGCAAAGATAAAACTTTT 57.775 25.926 0.00 0.00 40.25 2.27
460 461 8.664798 GTCCAACAAAAGCAAAGATAAAACTTT 58.335 29.630 0.00 0.00 40.16 2.66
461 462 7.279981 GGTCCAACAAAAGCAAAGATAAAACTT 59.720 33.333 0.00 0.00 0.00 2.66
462 463 6.761242 GGTCCAACAAAAGCAAAGATAAAACT 59.239 34.615 0.00 0.00 0.00 2.66
531 5098 2.373169 ACAATGAGAGAAGGAACAGCCA 59.627 45.455 0.00 0.00 40.02 4.75
540 5107 8.019669 CAGGTGAATACAAAACAATGAGAGAAG 58.980 37.037 0.00 0.00 0.00 2.85
558 5125 2.093973 CGTTCTAGGTGAGCAGGTGAAT 60.094 50.000 0.00 0.00 0.00 2.57
613 5180 4.332819 CGGAAGTCTGTTCAACTCTTGTTT 59.667 41.667 0.00 0.00 33.52 2.83
629 5196 4.151867 ACAGTAAAAATTCGAGCGGAAGTC 59.848 41.667 0.06 0.00 38.24 3.01
697 5264 5.584551 ATTTTGGAACAGAGGGAGTAGTT 57.415 39.130 0.00 0.00 42.39 2.24
702 5269 5.819901 GTCATCTATTTTGGAACAGAGGGAG 59.180 44.000 0.00 0.00 42.39 4.30
704 5271 4.884164 GGTCATCTATTTTGGAACAGAGGG 59.116 45.833 0.00 0.00 42.39 4.30
705 5272 4.884164 GGGTCATCTATTTTGGAACAGAGG 59.116 45.833 0.00 0.00 42.39 3.69
706 5273 5.500234 TGGGTCATCTATTTTGGAACAGAG 58.500 41.667 0.00 0.00 42.39 3.35
707 5274 5.512942 TGGGTCATCTATTTTGGAACAGA 57.487 39.130 0.00 0.00 42.39 3.41
708 5275 5.711976 AGTTGGGTCATCTATTTTGGAACAG 59.288 40.000 0.00 0.00 42.39 3.16
709 5276 5.640147 AGTTGGGTCATCTATTTTGGAACA 58.360 37.500 0.00 0.00 0.00 3.18
710 5277 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
711 5278 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
712 5279 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
713 5280 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
715 5282 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
716 5283 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
717 5284 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
721 5288 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
722 5289 7.174426 GCTAACTTTAGTACAAAGTTGGGTCAT 59.826 37.037 27.85 14.43 46.41 3.06
723 5290 6.484308 GCTAACTTTAGTACAAAGTTGGGTCA 59.516 38.462 27.85 16.53 46.41 4.02
724 5291 6.484308 TGCTAACTTTAGTACAAAGTTGGGTC 59.516 38.462 27.85 19.67 46.41 4.46
725 5292 6.261603 GTGCTAACTTTAGTACAAAGTTGGGT 59.738 38.462 27.85 15.55 46.41 4.51
735 5302 8.139521 ACTCAACTTTGTGCTAACTTTAGTAC 57.860 34.615 9.56 9.56 43.76 2.73
736 5303 7.982919 TGACTCAACTTTGTGCTAACTTTAGTA 59.017 33.333 0.00 0.00 33.32 1.82
737 5304 6.821665 TGACTCAACTTTGTGCTAACTTTAGT 59.178 34.615 0.00 0.00 33.32 2.24
738 5305 7.246674 TGACTCAACTTTGTGCTAACTTTAG 57.753 36.000 0.00 0.00 0.00 1.85
739 5306 7.801716 ATGACTCAACTTTGTGCTAACTTTA 57.198 32.000 0.00 0.00 0.00 1.85
740 5307 6.699575 ATGACTCAACTTTGTGCTAACTTT 57.300 33.333 0.00 0.00 0.00 2.66
741 5308 7.986085 ATATGACTCAACTTTGTGCTAACTT 57.014 32.000 0.00 0.00 0.00 2.66
746 5313 8.246180 CCAAAATATATGACTCAACTTTGTGCT 58.754 33.333 0.00 0.00 0.00 4.40
747 5314 8.243426 TCCAAAATATATGACTCAACTTTGTGC 58.757 33.333 0.00 0.00 0.00 4.57
750 5317 9.277565 CGTTCCAAAATATATGACTCAACTTTG 57.722 33.333 0.00 0.00 0.00 2.77
752 5319 7.827236 TCCGTTCCAAAATATATGACTCAACTT 59.173 33.333 0.00 0.00 0.00 2.66
753 5320 7.335627 TCCGTTCCAAAATATATGACTCAACT 58.664 34.615 0.00 0.00 0.00 3.16
755 5322 6.765989 CCTCCGTTCCAAAATATATGACTCAA 59.234 38.462 0.00 0.00 0.00 3.02
756 5323 6.288294 CCTCCGTTCCAAAATATATGACTCA 58.712 40.000 0.00 0.00 0.00 3.41
757 5324 5.701290 CCCTCCGTTCCAAAATATATGACTC 59.299 44.000 0.00 0.00 0.00 3.36
758 5325 5.368523 TCCCTCCGTTCCAAAATATATGACT 59.631 40.000 0.00 0.00 0.00 3.41
759 5326 5.617252 TCCCTCCGTTCCAAAATATATGAC 58.383 41.667 0.00 0.00 0.00 3.06
760 5327 5.368523 ACTCCCTCCGTTCCAAAATATATGA 59.631 40.000 0.00 0.00 0.00 2.15
761 5328 5.621193 ACTCCCTCCGTTCCAAAATATATG 58.379 41.667 0.00 0.00 0.00 1.78
762 5329 5.906772 ACTCCCTCCGTTCCAAAATATAT 57.093 39.130 0.00 0.00 0.00 0.86
764 5331 5.132144 ACATACTCCCTCCGTTCCAAAATAT 59.868 40.000 0.00 0.00 0.00 1.28
766 5333 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
767 5334 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
768 5335 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
769 5336 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
770 5337 2.291735 TGTACATACTCCCTCCGTTCCA 60.292 50.000 0.00 0.00 0.00 3.53
771 5338 2.381911 TGTACATACTCCCTCCGTTCC 58.618 52.381 0.00 0.00 0.00 3.62
772 5339 3.429960 GGTTGTACATACTCCCTCCGTTC 60.430 52.174 0.00 0.00 0.00 3.95
774 5341 2.105766 GGTTGTACATACTCCCTCCGT 58.894 52.381 0.00 0.00 0.00 4.69
776 5343 2.835764 TGTGGTTGTACATACTCCCTCC 59.164 50.000 0.00 0.00 0.00 4.30
777 5344 4.504858 CTTGTGGTTGTACATACTCCCTC 58.495 47.826 0.00 0.00 0.00 4.30
779 5346 3.008704 ACCTTGTGGTTGTACATACTCCC 59.991 47.826 0.00 0.00 46.05 4.30
780 5347 4.281898 ACCTTGTGGTTGTACATACTCC 57.718 45.455 0.00 0.00 46.05 3.85
877 6418 4.231753 TGTACGTACAGCGCACAC 57.768 55.556 24.10 2.68 41.41 3.82
884 6425 3.575630 AGTCTTGCACATGTACGTACAG 58.424 45.455 30.15 23.29 39.92 2.74
886 6427 4.478699 TGTAGTCTTGCACATGTACGTAC 58.521 43.478 18.90 18.90 0.00 3.67
1136 6689 2.151202 CGGTGCTGTCCTTGTAAACAT 58.849 47.619 0.00 0.00 0.00 2.71
1200 6753 1.805943 TCGGTGTTGAACGACTCGATA 59.194 47.619 5.20 0.00 33.69 2.92
1259 6812 1.282930 GAACTCGTCGTTGGTGAGGC 61.283 60.000 0.00 0.00 35.56 4.70
1335 6888 3.740832 TGCTGACATTGTTGTACTCGAAG 59.259 43.478 0.00 0.00 35.79 3.79
1339 6892 5.611796 TCATTGCTGACATTGTTGTACTC 57.388 39.130 0.00 0.00 35.79 2.59
1401 6954 4.020218 CCTTGGTCTTTGATAGGAGTGACA 60.020 45.833 0.00 0.00 0.00 3.58
1652 7209 2.220824 TGATGAACTTGAAAGCGTCGTG 59.779 45.455 0.00 0.00 0.00 4.35
1726 7283 1.047801 TGCTAGTCTTGCACTGTCCA 58.952 50.000 4.76 0.00 36.43 4.02
1780 7337 3.645660 TTGGCGGGCACATCCTCA 61.646 61.111 2.73 0.00 34.39 3.86
1799 7356 6.825721 ACGGCTTTCATAAGAGAAGATTCATT 59.174 34.615 0.00 0.00 32.92 2.57
1850 7407 0.400525 ATGACATCCCCTCCGTCCAT 60.401 55.000 0.00 0.00 0.00 3.41
1880 7437 2.060383 TCATCACCCCGCCAGAGAG 61.060 63.158 0.00 0.00 0.00 3.20
1881 7438 2.038813 TCATCACCCCGCCAGAGA 59.961 61.111 0.00 0.00 0.00 3.10
2017 7574 2.940514 TCTCCATTCTGAGGTACCCA 57.059 50.000 8.74 5.57 33.04 4.51
2046 7603 2.288825 CCACACATACCACTCTTGTCGT 60.289 50.000 0.00 0.00 0.00 4.34
2092 7649 4.196971 GCAATGTATTTCCCTACTCGGTT 58.803 43.478 0.00 0.00 0.00 4.44
2155 7717 9.051259 AGTGCAATGGAAGGTACATATATAGAT 57.949 33.333 0.00 0.00 0.00 1.98
2157 7719 7.065085 GCAGTGCAATGGAAGGTACATATATAG 59.935 40.741 16.93 0.00 0.00 1.31
2182 7744 4.786507 ACTTTACAACCGGAAAATAACGC 58.213 39.130 9.46 0.00 0.00 4.84
2184 7746 5.989249 ACGACTTTACAACCGGAAAATAAC 58.011 37.500 9.46 0.00 0.00 1.89
2191 7753 4.630111 ACATTTACGACTTTACAACCGGA 58.370 39.130 9.46 0.00 0.00 5.14
2192 7754 4.996062 ACATTTACGACTTTACAACCGG 57.004 40.909 0.00 0.00 0.00 5.28
2195 7757 9.500864 TTTACCAAACATTTACGACTTTACAAC 57.499 29.630 0.00 0.00 0.00 3.32
2248 7810 5.978814 ACACCGTAGAGAATTTAAGCTCAT 58.021 37.500 0.00 0.00 33.62 2.90
2282 7844 7.895429 TGAATGGATTCTAACAAGAGGGATTTT 59.105 33.333 1.26 0.00 37.67 1.82
2305 7867 4.081406 CAAATCTGGGTCCAATCAGTGAA 58.919 43.478 0.00 0.00 33.13 3.18
2493 8163 1.771854 TGCTCCAACCTAGGTTTGACA 59.228 47.619 24.99 20.92 36.00 3.58
2547 8244 4.098044 CCTAGAGACTAAGTGCATCGGAAA 59.902 45.833 0.00 0.00 0.00 3.13
2588 8286 6.320434 TCCAAAATGGATGGACATGTACTA 57.680 37.500 10.05 0.00 42.67 1.82
2638 8336 9.543783 GTAAGGTTTATCTATAAAGTGGGACAG 57.456 37.037 0.00 0.00 41.80 3.51
2700 8399 0.389948 GTGTAGTGTTAGCGCTGCCT 60.390 55.000 22.90 12.35 37.09 4.75
2734 8433 2.970324 GCAAGCCAACGACGTCCA 60.970 61.111 10.58 0.00 0.00 4.02
2799 8498 4.649218 ACATGGGTTTGCTTGTAGACTTTT 59.351 37.500 0.00 0.00 0.00 2.27
2908 8613 1.491668 TGGTCCAAATAGCTCGCCTA 58.508 50.000 0.00 0.00 0.00 3.93
2952 8662 2.360165 GGCCGTCTCGTTTATCTCCTAA 59.640 50.000 0.00 0.00 0.00 2.69
2953 8663 1.952296 GGCCGTCTCGTTTATCTCCTA 59.048 52.381 0.00 0.00 0.00 2.94
2960 8670 1.559149 GCGTTTGGCCGTCTCGTTTA 61.559 55.000 0.00 0.00 34.80 2.01
3061 8771 4.484026 TTACCATATTGGGGGCATCAAT 57.516 40.909 9.02 9.02 43.37 2.57
3066 8776 2.488167 CGTCATTACCATATTGGGGGCA 60.488 50.000 0.00 0.00 43.37 5.36
3068 8778 2.159382 GCGTCATTACCATATTGGGGG 58.841 52.381 0.00 0.00 43.37 5.40
3077 8788 1.795872 CAACTCGTTGCGTCATTACCA 59.204 47.619 0.00 0.00 33.45 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.