Multiple sequence alignment - TraesCS4A01G273600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G273600 chr4A 100.000 7385 0 0 1 7385 584061945 584069329 0.000000e+00 13638.0
1 TraesCS4A01G273600 chr4A 98.279 2150 35 2 1003 3152 458858918 458856771 0.000000e+00 3764.0
2 TraesCS4A01G273600 chr4B 93.291 2370 91 33 2667 5010 28196358 28194031 0.000000e+00 3434.0
3 TraesCS4A01G273600 chr4B 91.850 908 59 11 1448 2347 28197887 28196987 0.000000e+00 1253.0
4 TraesCS4A01G273600 chr4B 89.480 865 45 17 5679 6523 28193352 28192514 0.000000e+00 1051.0
5 TraesCS4A01G273600 chr4B 89.005 573 52 6 5051 5618 28194032 28193466 0.000000e+00 699.0
6 TraesCS4A01G273600 chr4B 80.488 328 39 13 7049 7373 28192160 28191855 2.070000e-55 228.0
7 TraesCS4A01G273600 chr4D 91.277 2052 105 32 3237 5265 16359152 16357152 0.000000e+00 2730.0
8 TraesCS4A01G273600 chr4D 90.391 1561 93 17 5405 6936 16356639 16355107 0.000000e+00 1999.0
9 TraesCS4A01G273600 chr4D 92.035 1243 76 10 1448 2671 16361015 16359777 0.000000e+00 1725.0
10 TraesCS4A01G273600 chr4D 91.675 985 68 8 5964 6936 16338141 16337159 0.000000e+00 1352.0
11 TraesCS4A01G273600 chr4D 92.688 465 17 7 863 1319 16361502 16361047 0.000000e+00 654.0
12 TraesCS4A01G273600 chr4D 86.824 592 42 12 2667 3249 16359736 16359172 4.860000e-176 628.0
13 TraesCS4A01G273600 chr4D 82.609 345 40 10 7049 7383 16354795 16354461 3.370000e-73 287.0
14 TraesCS4A01G273600 chr4D 82.029 345 42 10 7049 7383 16272643 16272309 7.300000e-70 276.0
15 TraesCS4A01G273600 chr4D 82.029 345 42 10 7049 7383 16314518 16314184 7.300000e-70 276.0
16 TraesCS4A01G273600 chr4D 81.739 345 43 11 7049 7383 16336846 16336512 3.400000e-68 270.0
17 TraesCS4A01G273600 chr4D 88.415 164 8 2 6374 6526 16272879 16272716 3.520000e-43 187.0
18 TraesCS4A01G273600 chr4D 88.415 164 8 2 6374 6526 16314754 16314591 3.520000e-43 187.0
19 TraesCS4A01G273600 chr4D 85.333 75 8 2 5326 5400 16356825 16356754 2.860000e-09 75.0
20 TraesCS4A01G273600 chr1A 90.039 773 52 14 1 755 585907575 585908340 0.000000e+00 977.0
21 TraesCS4A01G273600 chr1A 89.556 766 52 11 1 750 560234460 560233707 0.000000e+00 946.0
22 TraesCS4A01G273600 chr6D 90.052 774 45 12 1 755 322358878 322359638 0.000000e+00 974.0
23 TraesCS4A01G273600 chr6D 75.635 394 69 20 443 820 53776400 53776782 3.540000e-38 171.0
24 TraesCS4A01G273600 chr6D 90.909 44 4 0 771 814 41379022 41379065 8.000000e-05 60.2
25 TraesCS4A01G273600 chr5D 89.922 774 53 11 1 755 433203288 433202521 0.000000e+00 974.0
26 TraesCS4A01G273600 chr5D 87.296 795 50 21 71 828 447816452 447815672 0.000000e+00 861.0
27 TraesCS4A01G273600 chr5D 89.883 682 41 7 1 675 432172437 432171777 0.000000e+00 852.0
28 TraesCS4A01G273600 chr5D 88.571 350 28 6 1 344 456681840 456682183 1.480000e-111 414.0
29 TraesCS4A01G273600 chr7A 89.175 776 57 11 1 755 725703205 725702436 0.000000e+00 942.0
30 TraesCS4A01G273600 chr7A 89.263 773 53 14 1 752 203868899 203869662 0.000000e+00 941.0
31 TraesCS4A01G273600 chr7A 76.660 527 88 24 327 828 732590599 732591115 7.350000e-65 259.0
32 TraesCS4A01G273600 chr7A 82.540 63 9 2 758 820 731489909 731489969 4.000000e-03 54.7
33 TraesCS4A01G273600 chr7D 88.960 779 55 16 1 755 125417861 125418632 0.000000e+00 933.0
34 TraesCS4A01G273600 chr1B 87.792 770 79 10 4 765 44370505 44369743 0.000000e+00 887.0
35 TraesCS4A01G273600 chr5B 89.096 697 44 12 76 751 546758509 546757824 0.000000e+00 837.0
36 TraesCS4A01G273600 chr5B 86.305 774 61 16 1 751 594265585 594266336 0.000000e+00 800.0
37 TraesCS4A01G273600 chr6B 90.244 328 20 8 438 755 153560317 153559992 1.150000e-112 418.0
38 TraesCS4A01G273600 chr6B 82.895 152 15 7 670 820 117702183 117702042 7.780000e-25 126.0
39 TraesCS4A01G273600 chr5A 75.614 570 103 21 216 755 645418524 645417961 4.420000e-62 250.0
40 TraesCS4A01G273600 chr5A 75.686 547 90 25 241 755 534814581 534815116 4.460000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G273600 chr4A 584061945 584069329 7384 False 13638.000000 13638 100.000000 1 7385 1 chr4A.!!$F1 7384
1 TraesCS4A01G273600 chr4A 458856771 458858918 2147 True 3764.000000 3764 98.279000 1003 3152 1 chr4A.!!$R1 2149
2 TraesCS4A01G273600 chr4B 28191855 28197887 6032 True 1333.000000 3434 88.822800 1448 7373 5 chr4B.!!$R1 5925
3 TraesCS4A01G273600 chr4D 16354461 16361502 7041 True 1156.857143 2730 88.736714 863 7383 7 chr4D.!!$R4 6520
4 TraesCS4A01G273600 chr4D 16336512 16338141 1629 True 811.000000 1352 86.707000 5964 7383 2 chr4D.!!$R3 1419
5 TraesCS4A01G273600 chr4D 16272309 16272879 570 True 231.500000 276 85.222000 6374 7383 2 chr4D.!!$R1 1009
6 TraesCS4A01G273600 chr4D 16314184 16314754 570 True 231.500000 276 85.222000 6374 7383 2 chr4D.!!$R2 1009
7 TraesCS4A01G273600 chr1A 585907575 585908340 765 False 977.000000 977 90.039000 1 755 1 chr1A.!!$F1 754
8 TraesCS4A01G273600 chr1A 560233707 560234460 753 True 946.000000 946 89.556000 1 750 1 chr1A.!!$R1 749
9 TraesCS4A01G273600 chr6D 322358878 322359638 760 False 974.000000 974 90.052000 1 755 1 chr6D.!!$F3 754
10 TraesCS4A01G273600 chr5D 433202521 433203288 767 True 974.000000 974 89.922000 1 755 1 chr5D.!!$R2 754
11 TraesCS4A01G273600 chr5D 447815672 447816452 780 True 861.000000 861 87.296000 71 828 1 chr5D.!!$R3 757
12 TraesCS4A01G273600 chr5D 432171777 432172437 660 True 852.000000 852 89.883000 1 675 1 chr5D.!!$R1 674
13 TraesCS4A01G273600 chr7A 725702436 725703205 769 True 942.000000 942 89.175000 1 755 1 chr7A.!!$R1 754
14 TraesCS4A01G273600 chr7A 203868899 203869662 763 False 941.000000 941 89.263000 1 752 1 chr7A.!!$F1 751
15 TraesCS4A01G273600 chr7A 732590599 732591115 516 False 259.000000 259 76.660000 327 828 1 chr7A.!!$F3 501
16 TraesCS4A01G273600 chr7D 125417861 125418632 771 False 933.000000 933 88.960000 1 755 1 chr7D.!!$F1 754
17 TraesCS4A01G273600 chr1B 44369743 44370505 762 True 887.000000 887 87.792000 4 765 1 chr1B.!!$R1 761
18 TraesCS4A01G273600 chr5B 546757824 546758509 685 True 837.000000 837 89.096000 76 751 1 chr5B.!!$R1 675
19 TraesCS4A01G273600 chr5B 594265585 594266336 751 False 800.000000 800 86.305000 1 751 1 chr5B.!!$F1 750
20 TraesCS4A01G273600 chr5A 645417961 645418524 563 True 250.000000 250 75.614000 216 755 1 chr5A.!!$R1 539
21 TraesCS4A01G273600 chr5A 534814581 534815116 535 False 233.000000 233 75.686000 241 755 1 chr5A.!!$F1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.179111 CTTGCTAGATGGCGGTTCGA 60.179 55.000 0.00 0.0 34.52 3.71 F
1398 1595 0.521659 CTTCGCGTCTCCTTCTCGTC 60.522 60.000 5.77 0.0 0.00 4.20 F
1433 1630 0.168128 GTGCGTGATTTTTCTCCCCG 59.832 55.000 0.00 0.0 0.00 5.73 F
1442 1639 0.179040 TTTTCTCCCCGCGTGTTTCT 60.179 50.000 4.92 0.0 0.00 2.52 F
1443 1640 0.882927 TTTCTCCCCGCGTGTTTCTG 60.883 55.000 4.92 0.0 0.00 3.02 F
1445 1642 1.079127 CTCCCCGCGTGTTTCTGAT 60.079 57.895 4.92 0.0 0.00 2.90 F
1446 1643 1.361668 CTCCCCGCGTGTTTCTGATG 61.362 60.000 4.92 0.0 0.00 3.07 F
3357 3975 1.371558 GTGCCGAGGGAGTTTGACT 59.628 57.895 0.00 0.0 0.00 3.41 F
4614 5256 1.250328 TCCTTCCATTGTGCTGCTTG 58.750 50.000 0.00 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1414 1611 0.168128 CGGGGAGAAAAATCACGCAC 59.832 55.000 0.00 0.0 0.00 5.34 R
3326 3944 0.319211 TCGGCACCAAGTTACTCACG 60.319 55.000 0.00 0.0 0.00 4.35 R
3334 3952 1.705997 AAACTCCCTCGGCACCAAGT 61.706 55.000 0.00 0.0 0.00 3.16 R
3357 3975 5.360429 ACACAATGAGGCATGCATAATACAA 59.640 36.000 21.36 0.0 0.00 2.41 R
3410 4028 5.765182 AGTTGTGTTCCTCTAAATTGGACTG 59.235 40.000 0.00 0.0 31.24 3.51 R
3612 4239 9.407380 TGTGTATTATTTGAGTGGCTAATGATT 57.593 29.630 0.00 0.0 0.00 2.57 R
3624 4251 6.992123 TCATAGCACCCTGTGTATTATTTGAG 59.008 38.462 0.00 0.0 35.75 3.02 R
5121 5763 0.383231 ACAGCACAGCAGCAAAAGAC 59.617 50.000 0.00 0.0 36.85 3.01 R
6698 7809 0.317020 GCAGTGGAAAGTGCAACGAC 60.317 55.000 0.00 0.0 45.86 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.190578 GCCTTGCTAGATGGCGGT 59.809 61.111 0.00 0.00 35.30 5.68
64 65 0.179111 CTTGCTAGATGGCGGTTCGA 60.179 55.000 0.00 0.00 34.52 3.71
224 230 8.465273 TCTAGTTCATCTTTTCAGATCCGATA 57.535 34.615 0.00 0.00 37.71 2.92
259 265 4.378149 CGATGAGATGCAAACTATGGATGC 60.378 45.833 0.00 5.04 40.61 3.91
313 332 1.080354 AGTAGGTGCTGGGGTGCTA 59.920 57.895 0.00 0.00 0.00 3.49
368 389 4.968812 TTTATGACGTCGATAGTGGTGA 57.031 40.909 11.62 0.00 37.40 4.02
469 503 1.536766 CTTGTTGAAGGCATTGCTCGA 59.463 47.619 8.82 0.00 0.00 4.04
653 690 7.660208 GGTCTTTCCTATAGTTTTCTGTTCACA 59.340 37.037 0.00 0.00 0.00 3.58
668 705 4.454678 TGTTCACAGAGCTGATCACTTTT 58.545 39.130 4.21 0.00 0.00 2.27
713 783 9.273016 GCATAGCTTTGGTCTTATATGACTTTA 57.727 33.333 15.98 3.74 37.16 1.85
756 847 0.539438 GTGGATTGGTGTTGGCTGGA 60.539 55.000 0.00 0.00 0.00 3.86
765 856 2.094675 GTGTTGGCTGGATGTATGCTT 58.905 47.619 0.00 0.00 0.00 3.91
773 864 4.763793 GGCTGGATGTATGCTTATCATGTT 59.236 41.667 0.00 0.00 36.63 2.71
814 905 7.440255 GCTGCATTTTGAGCTAATAAAATCCAT 59.560 33.333 10.97 0.00 35.07 3.41
816 907 8.476447 TGCATTTTGAGCTAATAAAATCCATCA 58.524 29.630 10.97 6.49 35.07 3.07
844 935 7.458038 TTTGAAAATTTAGAAGTTTGGTCGC 57.542 32.000 0.00 0.00 0.00 5.19
845 936 6.137794 TGAAAATTTAGAAGTTTGGTCGCA 57.862 33.333 0.00 0.00 0.00 5.10
846 937 5.974751 TGAAAATTTAGAAGTTTGGTCGCAC 59.025 36.000 0.00 0.00 0.00 5.34
847 938 5.767816 AAATTTAGAAGTTTGGTCGCACT 57.232 34.783 0.00 0.00 0.00 4.40
848 939 5.358298 AATTTAGAAGTTTGGTCGCACTC 57.642 39.130 0.00 0.00 0.00 3.51
849 940 2.060326 TAGAAGTTTGGTCGCACTCG 57.940 50.000 0.00 0.00 0.00 4.18
850 941 1.204312 GAAGTTTGGTCGCACTCGC 59.796 57.895 0.00 0.00 35.26 5.03
851 942 1.495584 GAAGTTTGGTCGCACTCGCA 61.496 55.000 0.00 0.00 38.40 5.10
852 943 1.772063 AAGTTTGGTCGCACTCGCAC 61.772 55.000 0.00 0.00 38.40 5.34
853 944 2.970324 TTTGGTCGCACTCGCACC 60.970 61.111 0.00 0.00 38.40 5.01
854 945 4.980805 TTGGTCGCACTCGCACCC 62.981 66.667 0.00 0.00 38.40 4.61
857 948 4.664677 GTCGCACTCGCACCCAGT 62.665 66.667 0.00 0.00 38.40 4.00
858 949 4.662961 TCGCACTCGCACCCAGTG 62.663 66.667 0.00 0.00 43.66 3.66
859 950 4.969196 CGCACTCGCACCCAGTGT 62.969 66.667 3.50 0.00 42.89 3.55
860 951 2.342279 GCACTCGCACCCAGTGTA 59.658 61.111 3.50 0.00 42.89 2.90
861 952 1.079127 GCACTCGCACCCAGTGTAT 60.079 57.895 3.50 0.00 42.89 2.29
870 961 3.201290 GCACCCAGTGTATTGATCTGAG 58.799 50.000 0.00 0.00 35.75 3.35
872 963 2.171448 ACCCAGTGTATTGATCTGAGCC 59.829 50.000 0.00 0.00 0.00 4.70
890 981 3.351416 GACCGCAACAACCGACCC 61.351 66.667 0.00 0.00 0.00 4.46
956 1047 4.003788 CCAACGGCCGAGACCACT 62.004 66.667 35.90 3.57 0.00 4.00
988 1079 1.451504 CGCATCCTAGGGCATCCAA 59.548 57.895 9.46 0.00 34.83 3.53
989 1080 0.604780 CGCATCCTAGGGCATCCAAG 60.605 60.000 9.46 0.00 34.83 3.61
1033 1131 4.523282 GCCCCATCCTCCCTCCCT 62.523 72.222 0.00 0.00 0.00 4.20
1034 1132 2.122189 CCCCATCCTCCCTCCCTC 60.122 72.222 0.00 0.00 0.00 4.30
1395 1592 4.080640 GCTTCGCGTCTCCTTCTC 57.919 61.111 5.77 0.00 0.00 2.87
1396 1593 1.870016 GCTTCGCGTCTCCTTCTCG 60.870 63.158 5.77 0.00 0.00 4.04
1397 1594 1.502640 CTTCGCGTCTCCTTCTCGT 59.497 57.895 5.77 0.00 0.00 4.18
1398 1595 0.521659 CTTCGCGTCTCCTTCTCGTC 60.522 60.000 5.77 0.00 0.00 4.20
1399 1596 1.919956 TTCGCGTCTCCTTCTCGTCC 61.920 60.000 5.77 0.00 0.00 4.79
1400 1597 2.490685 GCGTCTCCTTCTCGTCCC 59.509 66.667 0.00 0.00 0.00 4.46
1401 1598 2.047443 GCGTCTCCTTCTCGTCCCT 61.047 63.158 0.00 0.00 0.00 4.20
1402 1599 1.803943 CGTCTCCTTCTCGTCCCTG 59.196 63.158 0.00 0.00 0.00 4.45
1403 1600 0.961358 CGTCTCCTTCTCGTCCCTGT 60.961 60.000 0.00 0.00 0.00 4.00
1404 1601 0.812549 GTCTCCTTCTCGTCCCTGTC 59.187 60.000 0.00 0.00 0.00 3.51
1405 1602 0.699399 TCTCCTTCTCGTCCCTGTCT 59.301 55.000 0.00 0.00 0.00 3.41
1406 1603 1.099689 CTCCTTCTCGTCCCTGTCTC 58.900 60.000 0.00 0.00 0.00 3.36
1407 1604 0.699399 TCCTTCTCGTCCCTGTCTCT 59.301 55.000 0.00 0.00 0.00 3.10
1408 1605 0.814457 CCTTCTCGTCCCTGTCTCTG 59.186 60.000 0.00 0.00 0.00 3.35
1409 1606 1.540267 CTTCTCGTCCCTGTCTCTGT 58.460 55.000 0.00 0.00 0.00 3.41
1410 1607 1.889829 CTTCTCGTCCCTGTCTCTGTT 59.110 52.381 0.00 0.00 0.00 3.16
1411 1608 1.996798 TCTCGTCCCTGTCTCTGTTT 58.003 50.000 0.00 0.00 0.00 2.83
1412 1609 1.887198 TCTCGTCCCTGTCTCTGTTTC 59.113 52.381 0.00 0.00 0.00 2.78
1413 1610 1.889829 CTCGTCCCTGTCTCTGTTTCT 59.110 52.381 0.00 0.00 0.00 2.52
1414 1611 1.613925 TCGTCCCTGTCTCTGTTTCTG 59.386 52.381 0.00 0.00 0.00 3.02
1415 1612 1.341531 CGTCCCTGTCTCTGTTTCTGT 59.658 52.381 0.00 0.00 0.00 3.41
1416 1613 2.760374 GTCCCTGTCTCTGTTTCTGTG 58.240 52.381 0.00 0.00 0.00 3.66
1417 1614 1.070758 TCCCTGTCTCTGTTTCTGTGC 59.929 52.381 0.00 0.00 0.00 4.57
1418 1615 1.143305 CCTGTCTCTGTTTCTGTGCG 58.857 55.000 0.00 0.00 0.00 5.34
1419 1616 1.539065 CCTGTCTCTGTTTCTGTGCGT 60.539 52.381 0.00 0.00 0.00 5.24
1420 1617 1.524355 CTGTCTCTGTTTCTGTGCGTG 59.476 52.381 0.00 0.00 0.00 5.34
1421 1618 1.136110 TGTCTCTGTTTCTGTGCGTGA 59.864 47.619 0.00 0.00 0.00 4.35
1422 1619 2.224042 TGTCTCTGTTTCTGTGCGTGAT 60.224 45.455 0.00 0.00 0.00 3.06
1423 1620 2.802816 GTCTCTGTTTCTGTGCGTGATT 59.197 45.455 0.00 0.00 0.00 2.57
1424 1621 3.248602 GTCTCTGTTTCTGTGCGTGATTT 59.751 43.478 0.00 0.00 0.00 2.17
1425 1622 3.876914 TCTCTGTTTCTGTGCGTGATTTT 59.123 39.130 0.00 0.00 0.00 1.82
1426 1623 4.335315 TCTCTGTTTCTGTGCGTGATTTTT 59.665 37.500 0.00 0.00 0.00 1.94
1427 1624 4.597079 TCTGTTTCTGTGCGTGATTTTTC 58.403 39.130 0.00 0.00 0.00 2.29
1428 1625 4.335315 TCTGTTTCTGTGCGTGATTTTTCT 59.665 37.500 0.00 0.00 0.00 2.52
1429 1626 4.597079 TGTTTCTGTGCGTGATTTTTCTC 58.403 39.130 0.00 0.00 0.00 2.87
1430 1627 3.896648 TTCTGTGCGTGATTTTTCTCC 57.103 42.857 0.00 0.00 0.00 3.71
1431 1628 2.151202 TCTGTGCGTGATTTTTCTCCC 58.849 47.619 0.00 0.00 0.00 4.30
1432 1629 1.200020 CTGTGCGTGATTTTTCTCCCC 59.800 52.381 0.00 0.00 0.00 4.81
1433 1630 0.168128 GTGCGTGATTTTTCTCCCCG 59.832 55.000 0.00 0.00 0.00 5.73
1434 1631 1.136774 GCGTGATTTTTCTCCCCGC 59.863 57.895 0.00 0.00 0.00 6.13
1435 1632 1.423845 CGTGATTTTTCTCCCCGCG 59.576 57.895 0.00 0.00 0.00 6.46
1436 1633 1.296056 CGTGATTTTTCTCCCCGCGT 61.296 55.000 4.92 0.00 0.00 6.01
1437 1634 0.168128 GTGATTTTTCTCCCCGCGTG 59.832 55.000 4.92 0.00 0.00 5.34
1438 1635 0.250553 TGATTTTTCTCCCCGCGTGT 60.251 50.000 4.92 0.00 0.00 4.49
1439 1636 0.879090 GATTTTTCTCCCCGCGTGTT 59.121 50.000 4.92 0.00 0.00 3.32
1440 1637 1.268625 GATTTTTCTCCCCGCGTGTTT 59.731 47.619 4.92 0.00 0.00 2.83
1441 1638 0.664224 TTTTTCTCCCCGCGTGTTTC 59.336 50.000 4.92 0.00 0.00 2.78
1442 1639 0.179040 TTTTCTCCCCGCGTGTTTCT 60.179 50.000 4.92 0.00 0.00 2.52
1443 1640 0.882927 TTTCTCCCCGCGTGTTTCTG 60.883 55.000 4.92 0.00 0.00 3.02
1444 1641 1.750341 TTCTCCCCGCGTGTTTCTGA 61.750 55.000 4.92 0.00 0.00 3.27
1445 1642 1.079127 CTCCCCGCGTGTTTCTGAT 60.079 57.895 4.92 0.00 0.00 2.90
1446 1643 1.361668 CTCCCCGCGTGTTTCTGATG 61.362 60.000 4.92 0.00 0.00 3.07
2724 3298 4.022329 GCCTGCTTACAGCTTTTCCTTAAA 60.022 41.667 0.00 0.00 42.97 1.52
3319 3937 3.648067 TCAAATCAGACACCAAGAGAGGT 59.352 43.478 0.00 0.00 44.48 3.85
3320 3938 3.971245 AATCAGACACCAAGAGAGGTC 57.029 47.619 0.00 0.00 40.77 3.85
3357 3975 1.371558 GTGCCGAGGGAGTTTGACT 59.628 57.895 0.00 0.00 0.00 3.41
3378 3996 6.080648 ACTTGTATTATGCATGCCTCATTG 57.919 37.500 16.68 0.00 0.00 2.82
3382 4000 5.360429 TGTATTATGCATGCCTCATTGTGTT 59.640 36.000 16.68 0.00 0.00 3.32
3383 4001 2.665649 ATGCATGCCTCATTGTGTTG 57.334 45.000 16.68 0.00 0.00 3.33
3384 4002 1.618487 TGCATGCCTCATTGTGTTGA 58.382 45.000 16.68 0.00 0.00 3.18
3385 4003 1.962100 TGCATGCCTCATTGTGTTGAA 59.038 42.857 16.68 0.00 0.00 2.69
3386 4004 2.563620 TGCATGCCTCATTGTGTTGAAT 59.436 40.909 16.68 0.00 0.00 2.57
3387 4005 3.762823 TGCATGCCTCATTGTGTTGAATA 59.237 39.130 16.68 0.00 0.00 1.75
3388 4006 4.403113 TGCATGCCTCATTGTGTTGAATAT 59.597 37.500 16.68 0.00 0.00 1.28
3389 4007 4.743151 GCATGCCTCATTGTGTTGAATATG 59.257 41.667 6.36 0.00 0.00 1.78
3390 4008 4.374843 TGCCTCATTGTGTTGAATATGC 57.625 40.909 0.00 0.00 0.00 3.14
3391 4009 4.018490 TGCCTCATTGTGTTGAATATGCT 58.982 39.130 0.00 0.00 0.00 3.79
3392 4010 4.463539 TGCCTCATTGTGTTGAATATGCTT 59.536 37.500 0.00 0.00 0.00 3.91
3393 4011 5.039333 GCCTCATTGTGTTGAATATGCTTC 58.961 41.667 0.00 0.00 0.00 3.86
3394 4012 5.393352 GCCTCATTGTGTTGAATATGCTTCA 60.393 40.000 0.00 0.00 0.00 3.02
3395 4013 6.682113 GCCTCATTGTGTTGAATATGCTTCAT 60.682 38.462 0.00 0.00 0.00 2.57
3396 4014 7.262772 CCTCATTGTGTTGAATATGCTTCATT 58.737 34.615 0.00 0.00 0.00 2.57
3397 4015 8.407832 CCTCATTGTGTTGAATATGCTTCATTA 58.592 33.333 0.00 0.00 0.00 1.90
3398 4016 9.961265 CTCATTGTGTTGAATATGCTTCATTAT 57.039 29.630 0.00 0.00 0.00 1.28
3399 4017 9.738832 TCATTGTGTTGAATATGCTTCATTATG 57.261 29.630 0.00 0.00 0.00 1.90
3407 4025 9.738832 TTGAATATGCTTCATTATGTGAATGTG 57.261 29.630 0.00 0.00 45.36 3.21
3408 4026 9.122779 TGAATATGCTTCATTATGTGAATGTGA 57.877 29.630 0.00 0.00 45.36 3.58
3436 4054 5.531287 GTCCAATTTAGAGGAACACAACTGT 59.469 40.000 0.00 0.00 35.29 3.55
3440 4058 7.763985 CCAATTTAGAGGAACACAACTGTTTTT 59.236 33.333 0.00 0.00 40.93 1.94
3658 4287 5.104527 ACACAGGGTGCTATGAGCTAAATAA 60.105 40.000 0.00 0.00 42.97 1.40
4166 4803 3.332034 CCTCGCAGATGATCATATTGCA 58.668 45.455 29.44 20.48 33.89 4.08
4357 4997 5.518848 TTCTGTGACATGCATCTGTTTTT 57.481 34.783 0.00 0.00 0.00 1.94
4431 5073 5.524284 TGAGATGCTCTTATTTAGACGCTC 58.476 41.667 0.00 0.00 31.99 5.03
4614 5256 1.250328 TCCTTCCATTGTGCTGCTTG 58.750 50.000 0.00 0.00 0.00 4.01
4633 5275 4.860907 GCTTGTTTGCATAGTTGGATTCTG 59.139 41.667 0.00 0.00 0.00 3.02
5023 5665 5.231702 TGCACATGTTTGAAGGATGATTTG 58.768 37.500 0.00 0.00 0.00 2.32
5035 5677 7.999679 TGAAGGATGATTTGCCTTTATAGTTG 58.000 34.615 0.00 0.00 44.23 3.16
5036 5678 7.615365 TGAAGGATGATTTGCCTTTATAGTTGT 59.385 33.333 0.00 0.00 44.23 3.32
5037 5679 7.573968 AGGATGATTTGCCTTTATAGTTGTC 57.426 36.000 0.00 0.00 0.00 3.18
5039 5681 6.239036 GGATGATTTGCCTTTATAGTTGTCCC 60.239 42.308 0.00 0.00 0.00 4.46
5040 5682 5.826643 TGATTTGCCTTTATAGTTGTCCCT 58.173 37.500 0.00 0.00 0.00 4.20
5042 5684 6.723977 TGATTTGCCTTTATAGTTGTCCCTTT 59.276 34.615 0.00 0.00 0.00 3.11
5043 5685 7.891183 TGATTTGCCTTTATAGTTGTCCCTTTA 59.109 33.333 0.00 0.00 0.00 1.85
5044 5686 8.838649 ATTTGCCTTTATAGTTGTCCCTTTAT 57.161 30.769 0.00 0.00 0.00 1.40
5045 5687 9.930158 ATTTGCCTTTATAGTTGTCCCTTTATA 57.070 29.630 0.00 0.00 0.00 0.98
5046 5688 9.930158 TTTGCCTTTATAGTTGTCCCTTTATAT 57.070 29.630 0.00 0.00 0.00 0.86
5047 5689 9.569122 TTGCCTTTATAGTTGTCCCTTTATATC 57.431 33.333 0.00 0.00 0.00 1.63
5056 5698 8.888579 AGTTGTCCCTTTATATCTATTCAACG 57.111 34.615 0.00 0.00 37.22 4.10
5059 5701 9.754382 TTGTCCCTTTATATCTATTCAACGTAC 57.246 33.333 0.00 0.00 0.00 3.67
5076 5718 3.624410 ACGTACTTGGAAGTTGAAACACC 59.376 43.478 0.00 0.00 40.37 4.16
5117 5759 6.101332 TGAAAATGGCAGCAATAGATTCAAC 58.899 36.000 0.00 0.00 0.00 3.18
5121 5763 3.313249 TGGCAGCAATAGATTCAACATCG 59.687 43.478 0.00 0.00 0.00 3.84
5155 5801 3.554324 TGTGCTGTTCGTGTCTTTTAGAC 59.446 43.478 0.00 0.00 45.26 2.59
5162 5808 7.916450 GCTGTTCGTGTCTTTTAGACTATCTAT 59.084 37.037 8.18 0.00 45.27 1.98
5236 5965 6.029607 GCAGATCAATGAGTTGCGAAAAATA 58.970 36.000 6.10 0.00 35.26 1.40
5279 6008 4.083431 TCAGAGGAGAGAAAAGTACGAACG 60.083 45.833 0.00 0.00 0.00 3.95
5282 6011 2.352519 GGAGAGAAAAGTACGAACGCCT 60.353 50.000 0.00 0.00 0.00 5.52
5283 6012 3.315418 GAGAGAAAAGTACGAACGCCTT 58.685 45.455 0.00 0.00 0.00 4.35
5288 6017 2.806608 AAGTACGAACGCCTTTCTGA 57.193 45.000 0.00 0.00 31.20 3.27
5313 6042 2.289133 GGTGAGAGTTCCCTGTTCACTC 60.289 54.545 3.35 0.00 37.76 3.51
5314 6043 2.365617 GTGAGAGTTCCCTGTTCACTCA 59.634 50.000 0.00 0.00 39.63 3.41
5323 6053 2.498167 CCTGTTCACTCAAGAACCTGG 58.502 52.381 4.58 0.00 45.62 4.45
5330 6060 1.151668 CTCAAGAACCTGGCAACTCG 58.848 55.000 0.00 0.00 37.61 4.18
5331 6243 0.884704 TCAAGAACCTGGCAACTCGC 60.885 55.000 0.00 0.00 41.28 5.03
5334 6246 4.250305 AACCTGGCAACTCGCGGT 62.250 61.111 6.13 0.00 43.84 5.68
5365 6277 0.313043 CTTGCTTGTGGCTGGTCTTG 59.687 55.000 0.00 0.00 42.39 3.02
5374 6286 3.195610 TGTGGCTGGTCTTGATAGTACAG 59.804 47.826 0.00 0.00 32.89 2.74
5400 6312 6.083630 CACGATGTTGTGGTATTTACCTTTG 58.916 40.000 8.19 0.00 46.58 2.77
5461 6483 7.040409 ACAAAAAGATTGAGTATGAAGTCACCC 60.040 37.037 0.00 0.00 34.73 4.61
5494 6516 5.389859 TGCTGCAAAATTATGCTGTAGTT 57.610 34.783 0.00 0.00 46.54 2.24
5515 6537 4.759516 TCATCATCATGCCATGAATTCG 57.240 40.909 12.08 1.60 43.50 3.34
5550 6574 3.297472 GAACTTTCTGGCGTGTTTAAGC 58.703 45.455 0.00 0.00 0.00 3.09
5659 6691 0.912486 GGCTCATGGTGACCTTACCT 59.088 55.000 2.11 0.00 41.43 3.08
5660 6692 2.116238 GGCTCATGGTGACCTTACCTA 58.884 52.381 2.11 0.00 41.43 3.08
5665 6697 5.070580 GCTCATGGTGACCTTACCTATTACT 59.929 44.000 2.11 0.00 41.43 2.24
5667 6699 6.884832 TCATGGTGACCTTACCTATTACTTG 58.115 40.000 2.11 0.00 41.43 3.16
5668 6700 5.093849 TGGTGACCTTACCTATTACTTGC 57.906 43.478 2.11 0.00 41.43 4.01
5669 6701 4.532916 TGGTGACCTTACCTATTACTTGCA 59.467 41.667 2.11 0.00 41.43 4.08
5671 6703 5.585047 GGTGACCTTACCTATTACTTGCAAG 59.415 44.000 24.84 24.84 37.74 4.01
5673 6705 7.325694 GTGACCTTACCTATTACTTGCAAGTA 58.674 38.462 30.81 30.81 40.37 2.24
5674 6706 7.985752 GTGACCTTACCTATTACTTGCAAGTAT 59.014 37.037 33.72 25.28 40.87 2.12
5675 6707 8.545472 TGACCTTACCTATTACTTGCAAGTATT 58.455 33.333 33.72 30.44 40.87 1.89
5677 6709 9.749340 ACCTTACCTATTACTTGCAAGTATTTT 57.251 29.630 33.72 24.13 40.87 1.82
5776 6866 1.155155 TTTTCCTGGGGCCACCTTC 59.845 57.895 0.20 0.00 41.11 3.46
5780 6870 1.380380 CCTGGGGCCACCTTCAATC 60.380 63.158 0.20 0.00 41.11 2.67
5786 6876 2.092323 GGGCCACCTTCAATCTTACAC 58.908 52.381 4.39 0.00 0.00 2.90
5897 6991 9.177608 CAGGTATTTGAAGAATGGAAATCTGTA 57.822 33.333 0.00 0.00 0.00 2.74
6173 7267 2.167861 GGATGAAGTGCTCGGCGTC 61.168 63.158 6.85 0.30 0.00 5.19
6243 7337 4.752879 TTGCGCCTGTACCCGAGC 62.753 66.667 4.18 0.74 0.00 5.03
6281 7375 2.596904 TATTTGCGAGGTAGGCACTC 57.403 50.000 0.00 0.00 40.71 3.51
6438 7538 2.418280 TCATTTGTACGTACTCCGCGTA 59.582 45.455 25.12 1.36 42.85 4.42
6441 7541 0.726827 TGTACGTACTCCGCGTAAGG 59.273 55.000 25.12 0.00 44.73 2.69
6456 7567 2.288395 CGTAAGGTAAGTGTCAACCCGT 60.288 50.000 0.00 0.00 36.34 5.28
6464 7575 2.014128 AGTGTCAACCCGTGAAAACAG 58.986 47.619 0.00 0.00 38.23 3.16
6473 7584 2.813754 CCCGTGAAAACAGTCATCATGT 59.186 45.455 0.00 0.00 0.00 3.21
6602 7713 4.415596 TGTGCCAATGGTTCTATTCCTTT 58.584 39.130 0.00 0.00 0.00 3.11
6606 7717 5.127031 TGCCAATGGTTCTATTCCTTTTAGC 59.873 40.000 0.00 0.00 0.00 3.09
6634 7745 6.483307 TGTATTCTCCTTGCTAATTCATTCGG 59.517 38.462 0.00 0.00 0.00 4.30
6674 7785 0.869454 GACCGCTCGCTGATCTCTTG 60.869 60.000 0.00 0.00 0.00 3.02
6698 7809 1.442526 GCATCCACGAGAAGGCATGG 61.443 60.000 0.00 0.00 0.00 3.66
6701 7812 1.811266 CCACGAGAAGGCATGGTCG 60.811 63.158 0.00 1.46 38.40 4.79
6733 7844 1.831389 CTGCCGTGAGTTTGTGACCG 61.831 60.000 0.00 0.00 0.00 4.79
6740 7851 1.140816 GAGTTTGTGACCGAGTGAGC 58.859 55.000 0.00 0.00 0.00 4.26
6754 7865 0.110056 GTGAGCGCACAAGAATGGTG 60.110 55.000 16.26 0.00 44.51 4.17
6760 7871 1.466167 CGCACAAGAATGGTGAAGGAG 59.534 52.381 0.00 0.00 0.00 3.69
6780 7891 3.137533 AGAACTTGAGAGCACAGAAAGC 58.862 45.455 0.00 0.00 0.00 3.51
6792 7903 0.676151 CAGAAAGCAGGGAGGCAGAC 60.676 60.000 0.00 0.00 35.83 3.51
6817 7928 8.362639 ACGACCTCAAAGAATAAACTTAGTGTA 58.637 33.333 0.00 0.00 0.00 2.90
6827 7938 8.985805 AGAATAAACTTAGTGTAGGTTTTGACG 58.014 33.333 0.24 0.00 38.63 4.35
6829 7940 3.999046 ACTTAGTGTAGGTTTTGACGGG 58.001 45.455 0.00 0.00 0.00 5.28
6852 7963 4.516698 GGTGTTGACATTCAGAGTGAACAT 59.483 41.667 0.00 0.00 43.10 2.71
6856 7967 7.587757 GTGTTGACATTCAGAGTGAACATTAAC 59.412 37.037 0.00 0.00 43.10 2.01
6887 7998 7.542890 ACAAACACATGAACACATTAACAAGA 58.457 30.769 0.00 0.00 0.00 3.02
6894 8005 5.361427 TGAACACATTAACAAGAACCGAGA 58.639 37.500 0.00 0.00 0.00 4.04
6897 8008 5.607477 ACACATTAACAAGAACCGAGAGAA 58.393 37.500 0.00 0.00 0.00 2.87
6910 8021 3.568430 ACCGAGAGAACAATTTGGAAACC 59.432 43.478 0.78 0.00 0.00 3.27
6913 8024 5.215160 CGAGAGAACAATTTGGAAACCTTG 58.785 41.667 0.78 0.00 0.00 3.61
6918 8029 2.134346 CAATTTGGAAACCTTGCACCG 58.866 47.619 0.00 0.00 0.00 4.94
6924 8035 1.269051 GGAAACCTTGCACCGTTTGAG 60.269 52.381 13.58 0.00 32.46 3.02
6927 8038 2.335316 ACCTTGCACCGTTTGAGTTA 57.665 45.000 0.00 0.00 0.00 2.24
6930 8041 2.489971 CTTGCACCGTTTGAGTTAGGA 58.510 47.619 0.00 0.00 0.00 2.94
6933 8044 2.037902 TGCACCGTTTGAGTTAGGATGA 59.962 45.455 0.00 0.00 0.00 2.92
6990 8342 2.026636 AGAGTTAATAGCGGCACCCAAA 60.027 45.455 1.45 0.00 0.00 3.28
6995 8347 0.960364 ATAGCGGCACCCAAACACAG 60.960 55.000 1.45 0.00 0.00 3.66
7010 8362 2.120909 ACAGCACACAACAGTGGCC 61.121 57.895 0.00 0.00 39.87 5.36
7030 8383 1.929169 CGATGTCGTGATCATTGCACT 59.071 47.619 0.00 0.00 34.18 4.40
7065 8448 5.248477 AGCTTTAGGTGGACTCAATTAGTGA 59.752 40.000 0.00 0.00 39.07 3.41
7075 8458 5.569059 GGACTCAATTAGTGAAATGTTTGCG 59.431 40.000 0.00 0.00 39.07 4.85
7076 8459 4.917415 ACTCAATTAGTGAAATGTTTGCGC 59.083 37.500 0.00 0.00 36.93 6.09
7096 8484 3.065371 CGCATCATCTAAACCAAGAACCC 59.935 47.826 0.00 0.00 0.00 4.11
7145 8533 3.423539 TTGGGTCTTCCTCAGTCAATG 57.576 47.619 0.00 0.00 36.20 2.82
7184 8572 5.353956 TGATGAATACGAACAGTCAATTGGG 59.646 40.000 5.42 0.00 0.00 4.12
7231 8619 9.708222 CAAAGGTGACATTTAAGATTAAGATCG 57.292 33.333 0.00 0.00 37.37 3.69
7233 8621 9.449719 AAGGTGACATTTAAGATTAAGATCGTT 57.550 29.630 0.00 0.00 37.37 3.85
7275 8664 6.404403 GGGACGATCCTTACAAAAGAAAATCC 60.404 42.308 0.00 0.00 36.57 3.01
7283 8672 4.400529 ACAAAAGAAAATCCCGCAAAGT 57.599 36.364 0.00 0.00 0.00 2.66
7286 8675 0.603065 AGAAAATCCCGCAAAGTGGC 59.397 50.000 0.00 0.00 0.00 5.01
7288 8677 0.975887 AAAATCCCGCAAAGTGGCAT 59.024 45.000 0.00 0.00 0.00 4.40
7289 8678 0.247185 AAATCCCGCAAAGTGGCATG 59.753 50.000 0.00 0.00 0.00 4.06
7290 8679 0.611618 AATCCCGCAAAGTGGCATGA 60.612 50.000 0.00 0.00 0.00 3.07
7292 8681 0.611618 TCCCGCAAAGTGGCATGAAT 60.612 50.000 0.00 0.00 0.00 2.57
7293 8682 0.179129 CCCGCAAAGTGGCATGAATC 60.179 55.000 0.00 0.00 0.00 2.52
7294 8683 0.179129 CCGCAAAGTGGCATGAATCC 60.179 55.000 0.00 0.00 0.00 3.01
7295 8684 0.523968 CGCAAAGTGGCATGAATCCG 60.524 55.000 0.00 0.00 0.00 4.18
7296 8685 0.810648 GCAAAGTGGCATGAATCCGA 59.189 50.000 0.00 0.00 0.00 4.55
7297 8686 1.406539 GCAAAGTGGCATGAATCCGAT 59.593 47.619 0.00 0.00 0.00 4.18
7298 8687 2.159198 GCAAAGTGGCATGAATCCGATT 60.159 45.455 0.00 0.00 0.00 3.34
7299 8688 3.066621 GCAAAGTGGCATGAATCCGATTA 59.933 43.478 0.00 0.00 0.00 1.75
7300 8689 4.439974 GCAAAGTGGCATGAATCCGATTAA 60.440 41.667 0.00 0.00 0.00 1.40
7301 8690 4.900635 AAGTGGCATGAATCCGATTAAC 57.099 40.909 0.00 0.00 0.00 2.01
7302 8691 3.214328 AGTGGCATGAATCCGATTAACC 58.786 45.455 0.00 0.00 0.00 2.85
7303 8692 2.293399 GTGGCATGAATCCGATTAACCC 59.707 50.000 0.00 0.00 0.00 4.11
7304 8693 2.092158 TGGCATGAATCCGATTAACCCA 60.092 45.455 0.00 0.00 0.00 4.51
7305 8694 3.157087 GGCATGAATCCGATTAACCCAT 58.843 45.455 0.00 0.00 0.00 4.00
7306 8695 3.573967 GGCATGAATCCGATTAACCCATT 59.426 43.478 0.00 0.00 0.00 3.16
7307 8696 4.764823 GGCATGAATCCGATTAACCCATTA 59.235 41.667 0.00 0.00 0.00 1.90
7317 8706 6.770785 TCCGATTAACCCATTAGAAAATCAGG 59.229 38.462 0.00 0.00 0.00 3.86
7341 8744 6.474102 GGTTGCAACGAAGAAGAAACAATAAA 59.526 34.615 22.67 0.00 0.00 1.40
7342 8745 7.305993 GGTTGCAACGAAGAAGAAACAATAAAG 60.306 37.037 22.67 0.00 0.00 1.85
7367 8770 3.415212 TCTTGTTTTCTCTCATGCCCTG 58.585 45.455 0.00 0.00 0.00 4.45
7374 8777 2.036098 CTCATGCCCTGTTGCCCA 59.964 61.111 0.00 0.00 0.00 5.36
7376 8779 3.384532 CATGCCCTGTTGCCCACC 61.385 66.667 0.00 0.00 0.00 4.61
7377 8780 3.593680 ATGCCCTGTTGCCCACCT 61.594 61.111 0.00 0.00 0.00 4.00
7378 8781 3.892104 ATGCCCTGTTGCCCACCTG 62.892 63.158 0.00 0.00 0.00 4.00
7381 8784 4.954970 CCTGTTGCCCACCTGCGT 62.955 66.667 0.00 0.00 0.00 5.24
7382 8785 3.663176 CTGTTGCCCACCTGCGTG 61.663 66.667 0.00 0.00 39.91 5.34
7383 8786 4.182433 TGTTGCCCACCTGCGTGA 62.182 61.111 0.00 0.00 43.14 4.35
7384 8787 2.672996 GTTGCCCACCTGCGTGAT 60.673 61.111 0.00 0.00 43.14 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.675837 ACAGACGACGGGAGATCGAA 60.676 55.000 0.00 0.00 42.25 3.71
64 65 2.885861 GCACAGACGACGGGAGAT 59.114 61.111 0.00 0.00 0.00 2.75
224 230 0.888619 TCTCATCGCCGAAGTGAACT 59.111 50.000 0.00 0.00 35.78 3.01
300 319 4.778143 CCGGTAGCACCCCAGCAC 62.778 72.222 0.00 0.00 33.75 4.40
307 326 4.446413 CACGACCCCGGTAGCACC 62.446 72.222 0.00 0.00 40.78 5.01
308 327 4.446413 CCACGACCCCGGTAGCAC 62.446 72.222 0.00 0.00 40.78 4.40
313 332 2.428622 CTTTTCCACGACCCCGGT 59.571 61.111 0.00 0.00 40.78 5.28
368 389 4.022503 GCTCGATACCGGGTACTTAAGAAT 60.023 45.833 9.50 0.00 38.83 2.40
408 429 3.676598 CGCCATTGCCAGAATTCAAATCA 60.677 43.478 8.44 0.00 0.00 2.57
469 503 5.297776 CCTGAAGAAATTGTCCGAGCATATT 59.702 40.000 0.00 0.00 0.00 1.28
617 654 2.240493 AGGAAAGACCATATTCGCGG 57.760 50.000 6.13 0.00 42.04 6.46
618 655 5.710984 ACTATAGGAAAGACCATATTCGCG 58.289 41.667 0.00 0.00 42.04 5.87
675 712 3.046087 CTATGCATGGGCGGCGAG 61.046 66.667 12.98 0.00 45.35 5.03
678 715 2.492773 AAAGCTATGCATGGGCGGC 61.493 57.895 10.16 0.00 45.35 6.53
713 783 3.726291 AAAAACACGCCAGCAAATAGT 57.274 38.095 0.00 0.00 0.00 2.12
773 864 9.486497 TCAAAATGCAGCATTAAGAAAATACAA 57.514 25.926 21.15 0.00 32.43 2.41
780 871 5.395682 AGCTCAAAATGCAGCATTAAGAA 57.604 34.783 21.15 6.64 38.18 2.52
785 876 8.726870 ATTTTATTAGCTCAAAATGCAGCATT 57.273 26.923 15.33 15.33 38.18 3.56
791 882 8.876275 TGATGGATTTTATTAGCTCAAAATGC 57.124 30.769 17.97 17.97 40.68 3.56
821 912 6.474102 GTGCGACCAAACTTCTAAATTTTCAA 59.526 34.615 0.00 0.00 0.00 2.69
822 913 5.974751 GTGCGACCAAACTTCTAAATTTTCA 59.025 36.000 0.00 0.00 0.00 2.69
823 914 6.206498 AGTGCGACCAAACTTCTAAATTTTC 58.794 36.000 0.00 0.00 0.00 2.29
827 918 3.432252 CGAGTGCGACCAAACTTCTAAAT 59.568 43.478 0.00 0.00 40.82 1.40
828 919 2.798283 CGAGTGCGACCAAACTTCTAAA 59.202 45.455 0.00 0.00 40.82 1.85
829 920 2.400399 CGAGTGCGACCAAACTTCTAA 58.600 47.619 0.00 0.00 40.82 2.10
830 921 1.933500 GCGAGTGCGACCAAACTTCTA 60.934 52.381 0.00 0.00 40.82 2.10
831 922 1.222115 GCGAGTGCGACCAAACTTCT 61.222 55.000 0.00 0.00 40.82 2.85
832 923 1.204312 GCGAGTGCGACCAAACTTC 59.796 57.895 0.00 0.00 40.82 3.01
833 924 3.330275 GCGAGTGCGACCAAACTT 58.670 55.556 0.00 0.00 40.82 2.66
842 933 2.835701 ATACACTGGGTGCGAGTGCG 62.836 60.000 0.00 0.00 42.50 5.34
843 934 0.673644 AATACACTGGGTGCGAGTGC 60.674 55.000 0.00 0.00 42.50 4.40
844 935 1.078709 CAATACACTGGGTGCGAGTG 58.921 55.000 0.00 0.00 43.92 3.51
845 936 0.973632 TCAATACACTGGGTGCGAGT 59.026 50.000 0.00 0.00 36.98 4.18
846 937 2.159043 AGATCAATACACTGGGTGCGAG 60.159 50.000 0.00 0.00 36.98 5.03
847 938 1.831106 AGATCAATACACTGGGTGCGA 59.169 47.619 0.00 0.00 36.98 5.10
848 939 1.935873 CAGATCAATACACTGGGTGCG 59.064 52.381 0.00 0.00 36.98 5.34
849 940 3.201290 CTCAGATCAATACACTGGGTGC 58.799 50.000 0.00 0.00 36.98 5.01
850 941 3.201290 GCTCAGATCAATACACTGGGTG 58.799 50.000 0.00 0.00 39.75 4.61
851 942 2.171448 GGCTCAGATCAATACACTGGGT 59.829 50.000 0.00 0.00 34.95 4.51
852 943 2.804572 CGGCTCAGATCAATACACTGGG 60.805 54.545 0.00 0.00 35.51 4.45
853 944 2.101415 TCGGCTCAGATCAATACACTGG 59.899 50.000 0.00 0.00 33.19 4.00
854 945 3.119291 GTCGGCTCAGATCAATACACTG 58.881 50.000 0.00 0.00 0.00 3.66
855 946 2.101582 GGTCGGCTCAGATCAATACACT 59.898 50.000 0.00 0.00 0.00 3.55
856 947 2.474816 GGTCGGCTCAGATCAATACAC 58.525 52.381 0.00 0.00 0.00 2.90
857 948 1.067060 CGGTCGGCTCAGATCAATACA 59.933 52.381 0.00 0.00 0.00 2.29
858 949 1.772182 CGGTCGGCTCAGATCAATAC 58.228 55.000 0.00 0.00 0.00 1.89
859 950 0.032130 GCGGTCGGCTCAGATCAATA 59.968 55.000 0.00 0.00 39.11 1.90
860 951 1.227380 GCGGTCGGCTCAGATCAAT 60.227 57.895 0.00 0.00 39.11 2.57
861 952 2.166130 TTGCGGTCGGCTCAGATCAA 62.166 55.000 3.87 0.00 44.05 2.57
872 963 3.708734 GGTCGGTTGTTGCGGTCG 61.709 66.667 0.00 0.00 0.00 4.79
935 1026 2.722201 GGTCTCGGCCGTTGGATCT 61.722 63.158 27.15 0.00 0.00 2.75
1032 1130 4.748679 GTTTGGCTGCTGCGCGAG 62.749 66.667 12.10 5.65 40.82 5.03
1379 1576 0.521659 GACGAGAAGGAGACGCGAAG 60.522 60.000 15.93 0.00 34.93 3.79
1380 1577 1.500844 GACGAGAAGGAGACGCGAA 59.499 57.895 15.93 0.00 34.93 4.70
1381 1578 2.396955 GGACGAGAAGGAGACGCGA 61.397 63.158 15.93 0.00 34.93 5.87
1382 1579 2.100603 GGACGAGAAGGAGACGCG 59.899 66.667 3.53 3.53 36.71 6.01
1383 1580 2.047443 AGGGACGAGAAGGAGACGC 61.047 63.158 0.00 0.00 0.00 5.19
1384 1581 0.961358 ACAGGGACGAGAAGGAGACG 60.961 60.000 0.00 0.00 0.00 4.18
1385 1582 0.812549 GACAGGGACGAGAAGGAGAC 59.187 60.000 0.00 0.00 0.00 3.36
1386 1583 0.699399 AGACAGGGACGAGAAGGAGA 59.301 55.000 0.00 0.00 0.00 3.71
1387 1584 1.099689 GAGACAGGGACGAGAAGGAG 58.900 60.000 0.00 0.00 0.00 3.69
1388 1585 0.699399 AGAGACAGGGACGAGAAGGA 59.301 55.000 0.00 0.00 0.00 3.36
1389 1586 0.814457 CAGAGACAGGGACGAGAAGG 59.186 60.000 0.00 0.00 0.00 3.46
1390 1587 1.540267 ACAGAGACAGGGACGAGAAG 58.460 55.000 0.00 0.00 0.00 2.85
1391 1588 1.996798 AACAGAGACAGGGACGAGAA 58.003 50.000 0.00 0.00 0.00 2.87
1392 1589 1.887198 GAAACAGAGACAGGGACGAGA 59.113 52.381 0.00 0.00 0.00 4.04
1393 1590 1.889829 AGAAACAGAGACAGGGACGAG 59.110 52.381 0.00 0.00 0.00 4.18
1394 1591 1.613925 CAGAAACAGAGACAGGGACGA 59.386 52.381 0.00 0.00 0.00 4.20
1395 1592 1.341531 ACAGAAACAGAGACAGGGACG 59.658 52.381 0.00 0.00 0.00 4.79
1396 1593 2.760374 CACAGAAACAGAGACAGGGAC 58.240 52.381 0.00 0.00 0.00 4.46
1397 1594 1.070758 GCACAGAAACAGAGACAGGGA 59.929 52.381 0.00 0.00 0.00 4.20
1398 1595 1.517242 GCACAGAAACAGAGACAGGG 58.483 55.000 0.00 0.00 0.00 4.45
1399 1596 1.143305 CGCACAGAAACAGAGACAGG 58.857 55.000 0.00 0.00 0.00 4.00
1400 1597 1.524355 CACGCACAGAAACAGAGACAG 59.476 52.381 0.00 0.00 0.00 3.51
1401 1598 1.136110 TCACGCACAGAAACAGAGACA 59.864 47.619 0.00 0.00 0.00 3.41
1402 1599 1.852942 TCACGCACAGAAACAGAGAC 58.147 50.000 0.00 0.00 0.00 3.36
1403 1600 2.820059 ATCACGCACAGAAACAGAGA 57.180 45.000 0.00 0.00 0.00 3.10
1404 1601 3.885484 AAATCACGCACAGAAACAGAG 57.115 42.857 0.00 0.00 0.00 3.35
1405 1602 4.335315 AGAAAAATCACGCACAGAAACAGA 59.665 37.500 0.00 0.00 0.00 3.41
1406 1603 4.601019 AGAAAAATCACGCACAGAAACAG 58.399 39.130 0.00 0.00 0.00 3.16
1407 1604 4.497340 GGAGAAAAATCACGCACAGAAACA 60.497 41.667 0.00 0.00 0.00 2.83
1408 1605 3.975035 GGAGAAAAATCACGCACAGAAAC 59.025 43.478 0.00 0.00 0.00 2.78
1409 1606 3.004315 GGGAGAAAAATCACGCACAGAAA 59.996 43.478 0.00 0.00 0.00 2.52
1410 1607 2.552315 GGGAGAAAAATCACGCACAGAA 59.448 45.455 0.00 0.00 0.00 3.02
1411 1608 2.151202 GGGAGAAAAATCACGCACAGA 58.849 47.619 0.00 0.00 0.00 3.41
1412 1609 1.200020 GGGGAGAAAAATCACGCACAG 59.800 52.381 0.00 0.00 0.00 3.66
1413 1610 1.243902 GGGGAGAAAAATCACGCACA 58.756 50.000 0.00 0.00 0.00 4.57
1414 1611 0.168128 CGGGGAGAAAAATCACGCAC 59.832 55.000 0.00 0.00 0.00 5.34
1415 1612 1.582610 GCGGGGAGAAAAATCACGCA 61.583 55.000 4.27 0.00 42.76 5.24
1416 1613 1.136774 GCGGGGAGAAAAATCACGC 59.863 57.895 0.00 0.00 38.99 5.34
1417 1614 1.296056 ACGCGGGGAGAAAAATCACG 61.296 55.000 12.47 0.00 0.00 4.35
1418 1615 0.168128 CACGCGGGGAGAAAAATCAC 59.832 55.000 12.47 0.00 0.00 3.06
1419 1616 0.250553 ACACGCGGGGAGAAAAATCA 60.251 50.000 15.46 0.00 0.00 2.57
1420 1617 0.879090 AACACGCGGGGAGAAAAATC 59.121 50.000 15.46 0.00 0.00 2.17
1421 1618 1.268625 GAAACACGCGGGGAGAAAAAT 59.731 47.619 15.46 0.00 0.00 1.82
1422 1619 0.664224 GAAACACGCGGGGAGAAAAA 59.336 50.000 15.46 0.00 0.00 1.94
1423 1620 0.179040 AGAAACACGCGGGGAGAAAA 60.179 50.000 15.46 0.00 0.00 2.29
1424 1621 0.882927 CAGAAACACGCGGGGAGAAA 60.883 55.000 15.46 0.00 0.00 2.52
1425 1622 1.301401 CAGAAACACGCGGGGAGAA 60.301 57.895 15.46 0.00 0.00 2.87
1426 1623 1.541310 ATCAGAAACACGCGGGGAGA 61.541 55.000 15.46 2.77 0.00 3.71
1427 1624 1.079127 ATCAGAAACACGCGGGGAG 60.079 57.895 15.46 0.13 0.00 4.30
1428 1625 1.375396 CATCAGAAACACGCGGGGA 60.375 57.895 15.46 0.00 0.00 4.81
1429 1626 3.039202 GCATCAGAAACACGCGGGG 62.039 63.158 15.46 5.78 0.00 5.73
1430 1627 2.244436 CTGCATCAGAAACACGCGGG 62.244 60.000 6.92 6.92 32.44 6.13
1431 1628 1.133253 CTGCATCAGAAACACGCGG 59.867 57.895 12.47 1.27 32.44 6.46
1432 1629 1.133253 CCTGCATCAGAAACACGCG 59.867 57.895 3.53 3.53 32.44 6.01
1433 1630 1.154150 GCCTGCATCAGAAACACGC 60.154 57.895 0.00 0.00 32.44 5.34
1434 1631 1.503542 GGCCTGCATCAGAAACACG 59.496 57.895 0.00 0.00 32.44 4.49
1435 1632 1.598701 GGGGCCTGCATCAGAAACAC 61.599 60.000 0.84 0.00 32.44 3.32
1436 1633 1.304381 GGGGCCTGCATCAGAAACA 60.304 57.895 0.84 0.00 32.44 2.83
1437 1634 2.409870 CGGGGCCTGCATCAGAAAC 61.410 63.158 0.84 0.00 32.44 2.78
1438 1635 2.045045 CGGGGCCTGCATCAGAAA 60.045 61.111 0.84 0.00 32.44 2.52
1439 1636 4.113815 CCGGGGCCTGCATCAGAA 62.114 66.667 6.91 0.00 32.44 3.02
1441 1638 4.559063 CTCCGGGGCCTGCATCAG 62.559 72.222 6.91 0.00 0.00 2.90
2724 3298 9.771915 GAAAAACAATGAACAAATTTCACATGT 57.228 25.926 0.00 0.00 34.99 3.21
3289 3905 5.034852 TGGTGTCTGATTTGACTTGAAGA 57.965 39.130 0.00 0.00 37.79 2.87
3319 3937 3.504906 CACCAAGTTACTCACGGTCTAGA 59.495 47.826 0.00 0.00 0.00 2.43
3320 3938 3.834610 CACCAAGTTACTCACGGTCTAG 58.165 50.000 0.00 0.00 0.00 2.43
3326 3944 0.319211 TCGGCACCAAGTTACTCACG 60.319 55.000 0.00 0.00 0.00 4.35
3334 3952 1.705997 AAACTCCCTCGGCACCAAGT 61.706 55.000 0.00 0.00 0.00 3.16
3357 3975 5.360429 ACACAATGAGGCATGCATAATACAA 59.640 36.000 21.36 0.00 0.00 2.41
3392 4010 6.652053 TGGACTGATCACATTCACATAATGA 58.348 36.000 4.82 0.00 34.65 2.57
3393 4011 6.930667 TGGACTGATCACATTCACATAATG 57.069 37.500 0.00 0.00 0.00 1.90
3394 4012 8.529424 AATTGGACTGATCACATTCACATAAT 57.471 30.769 0.00 0.00 0.00 1.28
3395 4013 7.943079 AATTGGACTGATCACATTCACATAA 57.057 32.000 0.00 0.00 0.00 1.90
3396 4014 7.943079 AAATTGGACTGATCACATTCACATA 57.057 32.000 0.00 0.00 0.00 2.29
3397 4015 6.845758 AAATTGGACTGATCACATTCACAT 57.154 33.333 0.00 0.00 0.00 3.21
3398 4016 7.167535 TCTAAATTGGACTGATCACATTCACA 58.832 34.615 0.00 0.00 0.00 3.58
3399 4017 7.201679 CCTCTAAATTGGACTGATCACATTCAC 60.202 40.741 0.00 0.00 0.00 3.18
3407 4025 6.173339 TGTGTTCCTCTAAATTGGACTGATC 58.827 40.000 0.00 0.00 31.24 2.92
3408 4026 6.126863 TGTGTTCCTCTAAATTGGACTGAT 57.873 37.500 0.00 0.00 31.24 2.90
3410 4028 5.765182 AGTTGTGTTCCTCTAAATTGGACTG 59.235 40.000 0.00 0.00 31.24 3.51
3612 4239 9.407380 TGTGTATTATTTGAGTGGCTAATGATT 57.593 29.630 0.00 0.00 0.00 2.57
3624 4251 6.992123 TCATAGCACCCTGTGTATTATTTGAG 59.008 38.462 0.00 0.00 35.75 3.02
3675 4304 7.098477 CAGGCAATTTTCAATATGAGAACCAA 58.902 34.615 0.00 0.00 0.00 3.67
4196 4836 8.066595 CCGATCATTTCAGTATTTCTTGACATC 58.933 37.037 0.00 0.00 0.00 3.06
4203 4843 7.921786 TTCAACCGATCATTTCAGTATTTCT 57.078 32.000 0.00 0.00 0.00 2.52
4358 4998 9.743057 CACAACCAAGTTAAATGAGTGAAATTA 57.257 29.630 0.00 0.00 0.00 1.40
4544 5186 8.040132 AGTCAAAGTGAAAAATGGAAAATGACA 58.960 29.630 0.00 0.00 35.85 3.58
4614 5256 4.708726 AGCAGAATCCAACTATGCAAAC 57.291 40.909 0.00 0.00 39.34 2.93
4633 5275 2.032178 ACAGACTCGTCAAAAAGCAAGC 59.968 45.455 0.00 0.00 0.00 4.01
5035 5677 9.978044 AAGTACGTTGAATAGATATAAAGGGAC 57.022 33.333 0.00 0.00 0.00 4.46
5036 5678 9.976511 CAAGTACGTTGAATAGATATAAAGGGA 57.023 33.333 0.00 0.00 38.60 4.20
5037 5679 9.204570 CCAAGTACGTTGAATAGATATAAAGGG 57.795 37.037 0.00 0.00 38.60 3.95
5043 5685 9.314321 CAACTTCCAAGTACGTTGAATAGATAT 57.686 33.333 0.00 0.00 38.57 1.63
5044 5686 8.525316 TCAACTTCCAAGTACGTTGAATAGATA 58.475 33.333 8.67 0.00 41.72 1.98
5045 5687 7.383687 TCAACTTCCAAGTACGTTGAATAGAT 58.616 34.615 8.67 0.00 41.72 1.98
5046 5688 6.751157 TCAACTTCCAAGTACGTTGAATAGA 58.249 36.000 8.67 0.66 41.72 1.98
5047 5689 7.416154 TTCAACTTCCAAGTACGTTGAATAG 57.584 36.000 15.90 1.72 45.81 1.73
5051 5693 4.936411 TGTTTCAACTTCCAAGTACGTTGA 59.064 37.500 0.00 7.42 42.61 3.18
5056 5698 4.879545 TGAGGTGTTTCAACTTCCAAGTAC 59.120 41.667 0.00 0.00 38.57 2.73
5059 5701 3.243201 GCTGAGGTGTTTCAACTTCCAAG 60.243 47.826 7.05 0.00 28.17 3.61
5076 5718 2.229675 TCATTCCGTGCATAGCTGAG 57.770 50.000 0.00 0.00 0.00 3.35
5117 5759 1.959747 CACAGCAGCAAAAGACGATG 58.040 50.000 0.00 0.00 0.00 3.84
5121 5763 0.383231 ACAGCACAGCAGCAAAAGAC 59.617 50.000 0.00 0.00 36.85 3.01
5155 5801 7.521423 GCACTCTAGTGGTTGACTGATAGATAG 60.521 44.444 11.86 0.00 45.72 2.08
5162 5808 2.297315 CTGCACTCTAGTGGTTGACTGA 59.703 50.000 11.86 0.00 45.72 3.41
5257 5986 4.159857 CGTTCGTACTTTTCTCTCCTCTG 58.840 47.826 0.00 0.00 0.00 3.35
5269 5998 2.806608 TCAGAAAGGCGTTCGTACTT 57.193 45.000 7.51 0.00 41.52 2.24
5270 5999 2.806608 TTCAGAAAGGCGTTCGTACT 57.193 45.000 7.51 0.00 41.52 2.73
5279 6008 3.416156 ACTCTCACCAATTCAGAAAGGC 58.584 45.455 5.18 0.00 0.00 4.35
5282 6011 4.104738 AGGGAACTCTCACCAATTCAGAAA 59.895 41.667 0.00 0.00 32.90 2.52
5283 6012 3.652869 AGGGAACTCTCACCAATTCAGAA 59.347 43.478 0.00 0.00 32.90 3.02
5288 6017 3.138283 TGAACAGGGAACTCTCACCAATT 59.862 43.478 0.00 0.00 40.21 2.32
5313 6042 1.576421 GCGAGTTGCCAGGTTCTTG 59.424 57.895 0.00 0.00 37.76 3.02
5314 6043 1.961277 CGCGAGTTGCCAGGTTCTT 60.961 57.895 0.00 0.00 42.08 2.52
5323 6053 1.917273 TCATAGTTACCGCGAGTTGC 58.083 50.000 8.23 0.00 41.47 4.17
5330 6060 5.293569 ACAAGCAAGTTATCATAGTTACCGC 59.706 40.000 0.00 0.00 0.00 5.68
5331 6243 6.238103 CCACAAGCAAGTTATCATAGTTACCG 60.238 42.308 0.00 0.00 0.00 4.02
5334 6246 6.677781 GCCACAAGCAAGTTATCATAGTTA 57.322 37.500 0.00 0.00 42.97 2.24
5365 6277 4.798907 CCACAACATCGTGTCTGTACTATC 59.201 45.833 0.00 0.00 34.98 2.08
5374 6286 5.212589 GGTAAATACCACAACATCGTGTC 57.787 43.478 4.72 0.00 45.73 3.67
5442 6464 6.201044 CGTTATGGGTGACTTCATACTCAATC 59.799 42.308 0.00 0.00 0.00 2.67
5494 6516 4.391155 TCGAATTCATGGCATGATGATGA 58.609 39.130 29.22 20.91 39.39 2.92
5515 6537 6.455647 CCAGAAAGTTCCCCAGTAAATTTTC 58.544 40.000 0.00 0.00 33.66 2.29
5550 6574 5.344933 CACATGTGCAAATGATGAACTGAAG 59.655 40.000 23.90 0.00 38.54 3.02
5722 6809 6.061022 TGCTGGAAAATAGGACTGTTATGA 57.939 37.500 0.00 0.00 0.00 2.15
5723 6810 6.769822 AGATGCTGGAAAATAGGACTGTTATG 59.230 38.462 0.00 0.00 0.00 1.90
5728 6816 4.521146 ACAGATGCTGGAAAATAGGACTG 58.479 43.478 0.00 0.00 35.51 3.51
5809 6899 2.160417 CCAGAAGACAACTGGCGATTTC 59.840 50.000 0.00 0.00 46.30 2.17
5834 6924 3.056035 AGTTAGGTTCGTCTGGATTGACC 60.056 47.826 0.00 0.00 39.54 4.02
5897 6991 2.049063 GTCAGCTCCGTTCTGCGT 60.049 61.111 0.00 0.00 39.32 5.24
6173 7267 0.933097 CCTCGTTGATCGCCTCATTG 59.067 55.000 0.00 0.00 39.67 2.82
6218 7312 0.443869 GTACAGGCGCAACATCAGTG 59.556 55.000 10.83 0.00 0.00 3.66
6243 7337 1.549203 AACCTTGCCTATTGTGCCTG 58.451 50.000 0.00 0.00 0.00 4.85
6438 7538 1.764134 TCACGGGTTGACACTTACCTT 59.236 47.619 0.00 0.00 34.75 3.50
6441 7541 3.374678 TGTTTTCACGGGTTGACACTTAC 59.625 43.478 0.00 0.00 32.26 2.34
6456 7567 6.294120 GGTTGATCACATGATGACTGTTTTCA 60.294 38.462 0.00 0.00 41.24 2.69
6464 7575 4.940046 AGAACAGGTTGATCACATGATGAC 59.060 41.667 14.08 0.84 39.73 3.06
6473 7584 3.743521 CAGGTGAAGAACAGGTTGATCA 58.256 45.455 0.00 0.00 0.00 2.92
6602 7713 6.791867 TTAGCAAGGAGAATACAGAGCTAA 57.208 37.500 0.00 0.00 39.98 3.09
6606 7717 8.674263 AATGAATTAGCAAGGAGAATACAGAG 57.326 34.615 0.00 0.00 0.00 3.35
6634 7745 6.268566 GGTCATTGCCACTCATTAGAATTTC 58.731 40.000 0.00 0.00 0.00 2.17
6686 7797 1.970917 GCAACGACCATGCCTTCTCG 61.971 60.000 0.00 0.00 37.85 4.04
6698 7809 0.317020 GCAGTGGAAAGTGCAACGAC 60.317 55.000 0.00 0.00 45.86 4.34
6701 7812 1.008538 CGGCAGTGGAAAGTGCAAC 60.009 57.895 7.75 0.00 41.75 4.17
6733 7844 0.445436 CCATTCTTGTGCGCTCACTC 59.555 55.000 12.40 0.00 43.49 3.51
6740 7851 1.466167 CTCCTTCACCATTCTTGTGCG 59.534 52.381 0.00 0.00 33.71 5.34
6754 7865 3.006323 TCTGTGCTCTCAAGTTCTCCTTC 59.994 47.826 0.00 0.00 0.00 3.46
6760 7871 2.874701 TGCTTTCTGTGCTCTCAAGTTC 59.125 45.455 0.00 0.00 0.00 3.01
6780 7891 2.681778 AGGTCGTCTGCCTCCCTG 60.682 66.667 0.00 0.00 0.00 4.45
6792 7903 7.653767 ACACTAAGTTTATTCTTTGAGGTCG 57.346 36.000 0.00 0.00 0.00 4.79
6817 7928 0.256464 TCAACACCCCGTCAAAACCT 59.744 50.000 0.00 0.00 0.00 3.50
6827 7938 2.154462 CACTCTGAATGTCAACACCCC 58.846 52.381 0.00 0.00 0.00 4.95
6829 7940 3.876914 TGTTCACTCTGAATGTCAACACC 59.123 43.478 0.00 0.00 38.79 4.16
6852 7963 8.678199 TGTGTTCATGTGTTTGTATTCAGTTAA 58.322 29.630 0.00 0.00 0.00 2.01
6856 7967 9.676195 TTAATGTGTTCATGTGTTTGTATTCAG 57.324 29.630 0.00 0.00 34.19 3.02
6887 7998 4.037565 GGTTTCCAAATTGTTCTCTCGGTT 59.962 41.667 0.00 0.00 0.00 4.44
6894 8005 4.441792 GTGCAAGGTTTCCAAATTGTTCT 58.558 39.130 0.00 0.00 0.00 3.01
6897 8008 2.482839 CGGTGCAAGGTTTCCAAATTGT 60.483 45.455 0.00 0.00 0.00 2.71
6910 8021 2.489971 TCCTAACTCAAACGGTGCAAG 58.510 47.619 0.00 0.00 0.00 4.01
6913 8024 2.695359 TCATCCTAACTCAAACGGTGC 58.305 47.619 0.00 0.00 0.00 5.01
6924 8035 8.308207 GGGAGAGTCATTAAGTATCATCCTAAC 58.692 40.741 0.00 0.00 0.00 2.34
6927 8038 6.629156 AGGGAGAGTCATTAAGTATCATCCT 58.371 40.000 0.00 0.00 0.00 3.24
6930 8041 8.875168 CCTAAAGGGAGAGTCATTAAGTATCAT 58.125 37.037 0.00 0.00 37.23 2.45
6933 8044 8.855804 TTCCTAAAGGGAGAGTCATTAAGTAT 57.144 34.615 0.00 0.00 46.01 2.12
6962 8073 3.132111 TGCCGCTATTAACTCTCATCACA 59.868 43.478 0.00 0.00 0.00 3.58
6963 8074 3.491267 GTGCCGCTATTAACTCTCATCAC 59.509 47.826 0.00 0.00 0.00 3.06
6967 8078 1.138266 GGGTGCCGCTATTAACTCTCA 59.862 52.381 0.00 0.00 0.00 3.27
6968 8079 1.138266 TGGGTGCCGCTATTAACTCTC 59.862 52.381 0.00 0.00 0.00 3.20
6969 8080 1.200519 TGGGTGCCGCTATTAACTCT 58.799 50.000 0.00 0.00 0.00 3.24
6970 8081 2.032680 TTGGGTGCCGCTATTAACTC 57.967 50.000 0.00 0.00 0.00 3.01
6990 8342 1.656818 GCCACTGTTGTGTGCTGTGT 61.657 55.000 0.00 0.00 42.34 3.72
6995 8347 2.260869 ATCGGCCACTGTTGTGTGC 61.261 57.895 2.24 0.00 42.34 4.57
7010 8362 1.929169 AGTGCAATGATCACGACATCG 59.071 47.619 0.00 0.00 46.33 3.84
7030 8383 5.646360 GTCCACCTAAAGCTAACATTTAGCA 59.354 40.000 17.84 0.00 42.68 3.49
7065 8448 4.864247 GGTTTAGATGATGCGCAAACATTT 59.136 37.500 25.92 23.25 32.11 2.32
7075 8458 3.065371 CGGGTTCTTGGTTTAGATGATGC 59.935 47.826 0.00 0.00 0.00 3.91
7076 8459 4.513442 TCGGGTTCTTGGTTTAGATGATG 58.487 43.478 0.00 0.00 0.00 3.07
7096 8484 1.369625 GGCTCCACCTAAACACATCG 58.630 55.000 0.00 0.00 34.51 3.84
7164 8552 4.007659 ACCCCAATTGACTGTTCGTATTC 58.992 43.478 7.12 0.00 0.00 1.75
7170 8558 3.383185 TGTTTCACCCCAATTGACTGTTC 59.617 43.478 7.12 0.00 0.00 3.18
7184 8572 8.669243 CCTTTGAGTTTCTAGATATGTTTCACC 58.331 37.037 0.00 0.00 0.00 4.02
7231 8619 5.126707 CGTCCCCATCATAGGTACCTATAAC 59.873 48.000 29.92 18.01 37.16 1.89
7233 8621 4.541310 TCGTCCCCATCATAGGTACCTATA 59.459 45.833 29.92 19.51 37.16 1.31
7275 8664 0.179129 GGATTCATGCCACTTTGCGG 60.179 55.000 0.00 0.00 0.00 5.69
7283 8672 2.092158 TGGGTTAATCGGATTCATGCCA 60.092 45.455 6.49 0.00 0.00 4.92
7286 8675 7.744087 TTCTAATGGGTTAATCGGATTCATG 57.256 36.000 6.49 0.00 0.00 3.07
7288 8677 8.760980 ATTTTCTAATGGGTTAATCGGATTCA 57.239 30.769 6.49 0.00 0.00 2.57
7289 8678 8.846211 TGATTTTCTAATGGGTTAATCGGATTC 58.154 33.333 6.49 0.00 0.00 2.52
7290 8679 8.760980 TGATTTTCTAATGGGTTAATCGGATT 57.239 30.769 8.49 8.49 0.00 3.01
7292 8681 6.770785 CCTGATTTTCTAATGGGTTAATCGGA 59.229 38.462 0.00 0.00 32.67 4.55
7293 8682 6.546034 ACCTGATTTTCTAATGGGTTAATCGG 59.454 38.462 0.00 0.00 0.00 4.18
7294 8683 7.568199 ACCTGATTTTCTAATGGGTTAATCG 57.432 36.000 0.00 0.00 0.00 3.34
7295 8684 7.706607 GCAACCTGATTTTCTAATGGGTTAATC 59.293 37.037 0.00 0.00 35.79 1.75
7296 8685 7.180051 TGCAACCTGATTTTCTAATGGGTTAAT 59.820 33.333 0.00 0.00 35.79 1.40
7297 8686 6.495181 TGCAACCTGATTTTCTAATGGGTTAA 59.505 34.615 0.00 0.00 35.79 2.01
7298 8687 6.013379 TGCAACCTGATTTTCTAATGGGTTA 58.987 36.000 0.00 0.00 35.79 2.85
7299 8688 4.837860 TGCAACCTGATTTTCTAATGGGTT 59.162 37.500 0.00 0.00 37.13 4.11
7300 8689 4.415596 TGCAACCTGATTTTCTAATGGGT 58.584 39.130 0.00 0.00 31.68 4.51
7301 8690 5.170748 GTTGCAACCTGATTTTCTAATGGG 58.829 41.667 19.15 0.00 0.00 4.00
7302 8691 4.858692 CGTTGCAACCTGATTTTCTAATGG 59.141 41.667 23.42 0.00 0.00 3.16
7303 8692 5.698832 TCGTTGCAACCTGATTTTCTAATG 58.301 37.500 23.42 4.63 0.00 1.90
7304 8693 5.957842 TCGTTGCAACCTGATTTTCTAAT 57.042 34.783 23.42 0.00 0.00 1.73
7305 8694 5.529430 TCTTCGTTGCAACCTGATTTTCTAA 59.471 36.000 23.42 0.00 0.00 2.10
7306 8695 5.060506 TCTTCGTTGCAACCTGATTTTCTA 58.939 37.500 23.42 0.00 0.00 2.10
7307 8696 3.882888 TCTTCGTTGCAACCTGATTTTCT 59.117 39.130 23.42 0.00 0.00 2.52
7317 8706 7.431084 TCTTTATTGTTTCTTCTTCGTTGCAAC 59.569 33.333 19.89 19.89 0.00 4.17
7342 8745 4.335037 GGGCATGAGAGAAAACAAGATCTC 59.665 45.833 0.00 0.00 41.92 2.75
7357 8760 2.036098 TGGGCAACAGGGCATGAG 59.964 61.111 5.99 0.00 45.66 2.90
7367 8770 2.672996 ATCACGCAGGTGGGCAAC 60.673 61.111 0.00 0.00 44.50 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.