Multiple sequence alignment - TraesCS4A01G272000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G272000 chr4A 100.000 4341 0 0 1 4341 583758140 583753800 0.000000e+00 8017
1 TraesCS4A01G272000 chr4A 90.859 361 21 3 3455 3805 583718061 583717703 1.410000e-129 473
2 TraesCS4A01G272000 chr4A 88.129 278 21 6 3606 3871 583714210 583713933 1.950000e-83 320
3 TraesCS4A01G272000 chr4A 92.357 157 12 0 3882 4038 583717070 583716914 1.570000e-54 224
4 TraesCS4A01G272000 chr4A 98.750 80 1 0 3793 3872 583717686 583717607 4.530000e-30 143
5 TraesCS4A01G272000 chr4D 89.370 2907 164 69 518 3358 16799002 16801829 0.000000e+00 3522
6 TraesCS4A01G272000 chr4D 89.976 419 34 4 20 438 16798562 16798972 6.390000e-148 534
7 TraesCS4A01G272000 chr4D 95.570 316 11 1 4024 4336 421923777 421924092 1.800000e-138 503
8 TraesCS4A01G272000 chr4D 91.575 273 18 4 3603 3871 16806691 16806962 5.300000e-99 372
9 TraesCS4A01G272000 chr4D 85.612 278 12 2 3384 3661 16801819 16802068 2.570000e-67 267
10 TraesCS4A01G272000 chr4D 96.078 153 5 1 3871 4023 16802870 16803021 9.320000e-62 248
11 TraesCS4A01G272000 chr4B 86.875 2179 153 57 616 2745 28716809 28718903 0.000000e+00 2316
12 TraesCS4A01G272000 chr4B 93.056 648 34 4 2746 3383 28718942 28719588 0.000000e+00 937
13 TraesCS4A01G272000 chr4B 91.242 491 21 5 3384 3872 28719547 28720017 0.000000e+00 649
14 TraesCS4A01G272000 chr4B 92.500 440 25 3 1 438 28716326 28716759 1.330000e-174 623
15 TraesCS4A01G272000 chr4B 85.765 281 17 10 3606 3864 28723394 28723673 4.280000e-70 276
16 TraesCS4A01G272000 chr4B 95.082 122 6 0 3902 4023 28720569 28720690 4.430000e-45 193
17 TraesCS4A01G272000 chr2A 83.036 1120 97 42 1383 2456 12281280 12280208 0.000000e+00 929
18 TraesCS4A01G272000 chr2A 97.419 155 4 0 1194 1348 12281434 12281280 9.260000e-67 265
19 TraesCS4A01G272000 chr2A 95.070 142 7 0 2665 2806 12280200 12280059 1.570000e-54 224
20 TraesCS4A01G272000 chr7A 95.938 320 10 1 4024 4340 314427390 314427071 2.310000e-142 516
21 TraesCS4A01G272000 chr7A 95.327 321 12 1 4024 4341 314425402 314425082 1.390000e-139 507
22 TraesCS4A01G272000 chr7A 94.704 321 14 1 4024 4341 314423428 314423108 3.020000e-136 496
23 TraesCS4A01G272000 chr7A 93.910 312 19 0 4024 4335 314421437 314421126 5.080000e-129 472
24 TraesCS4A01G272000 chr6A 95.356 323 11 2 4023 4341 493730389 493730711 1.080000e-140 510
25 TraesCS4A01G272000 chr7D 94.872 312 16 0 4024 4335 545394389 545394078 5.050000e-134 488
26 TraesCS4A01G272000 chr7D 92.236 322 22 1 4023 4341 167266348 167266027 1.840000e-123 453
27 TraesCS4A01G272000 chr6D 93.590 312 20 0 4024 4335 98234466 98234155 2.360000e-127 466


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G272000 chr4A 583753800 583758140 4340 True 8017.000000 8017 100.000000 1 4341 1 chr4A.!!$R1 4340
1 TraesCS4A01G272000 chr4A 583713933 583718061 4128 True 290.000000 473 92.523750 3455 4038 4 chr4A.!!$R2 583
2 TraesCS4A01G272000 chr4D 16798562 16806962 8400 False 988.600000 3522 90.522200 20 4023 5 chr4D.!!$F2 4003
3 TraesCS4A01G272000 chr4B 28716326 28723673 7347 False 832.333333 2316 90.753333 1 4023 6 chr4B.!!$F1 4022
4 TraesCS4A01G272000 chr2A 12280059 12281434 1375 True 472.666667 929 91.841667 1194 2806 3 chr2A.!!$R1 1612
5 TraesCS4A01G272000 chr7A 314421126 314427390 6264 True 497.750000 516 94.969750 4024 4341 4 chr7A.!!$R1 317

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 959 0.037605 GGCTCCTTCCGTCGAGAAAA 60.038 55.0 0.00 0.0 0.00 2.29 F
952 970 0.039798 TCGAGAAAAGACGGACACGG 60.040 55.0 0.00 0.0 46.48 4.94 F
1742 1792 0.109153 AGCTGCATTCCTCACACACA 59.891 50.0 1.02 0.0 0.00 3.72 F
1743 1793 0.239347 GCTGCATTCCTCACACACAC 59.761 55.0 0.00 0.0 0.00 3.82 F
1833 1899 0.595095 CTTGTTGAAGGCAGCTGGAC 59.405 55.0 17.12 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2486 2587 0.179260 CCAACAACGTCGTGTATGCG 60.179 55.000 0.0 0.0 0.00 4.73 R
2491 2592 4.619437 AATTTTACCAACAACGTCGTGT 57.381 36.364 0.0 0.0 0.00 4.49 R
3251 3397 0.112995 ACCCTGCAAATCCAGCAAGA 59.887 50.000 0.0 0.0 42.17 3.02 R
3312 3458 2.288640 GGAACTCGGTATAATGGGTCGG 60.289 54.545 0.0 0.0 0.00 4.79 R
3355 3501 2.637382 TGACACCTGATTCTTGTAGGCA 59.363 45.455 0.0 0.0 34.93 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.227992 GTTTAGTTCTCTCCATGATTCTTCG 57.772 40.000 0.00 0.00 0.00 3.79
85 86 0.039527 GGTTCAACCGTGTGGCAATC 60.040 55.000 0.00 0.00 39.70 2.67
178 179 2.682856 GACAAAGAACAACTGCAGGACA 59.317 45.455 19.93 0.00 0.00 4.02
281 282 3.436243 ACCTCCTGTTTGGTTTTTGTGA 58.564 40.909 0.00 0.00 37.07 3.58
300 301 1.331138 GAGCTACATCACGACGCTACT 59.669 52.381 0.00 0.00 0.00 2.57
304 305 0.376152 ACATCACGACGCTACTACCG 59.624 55.000 0.00 0.00 0.00 4.02
307 308 0.874390 TCACGACGCTACTACCGTTT 59.126 50.000 0.00 0.00 39.30 3.60
309 310 0.593128 ACGACGCTACTACCGTTTGT 59.407 50.000 0.00 0.00 39.30 2.83
311 312 1.384409 CGACGCTACTACCGTTTGTTG 59.616 52.381 0.00 0.00 39.30 3.33
317 318 0.601841 ACTACCGTTTGTTGCTCCGG 60.602 55.000 0.00 0.00 45.72 5.14
318 319 1.908066 CTACCGTTTGTTGCTCCGGC 61.908 60.000 0.00 0.00 44.14 6.13
406 407 9.677567 GAGTTTATAGTCATGACATCTCTTCTC 57.322 37.037 27.02 19.21 0.00 2.87
416 417 8.813951 TCATGACATCTCTTCTCTTATATGCAT 58.186 33.333 3.79 3.79 0.00 3.96
424 425 9.093458 TCTCTTCTCTTATATGCATTGATGGTA 57.907 33.333 3.54 0.00 0.00 3.25
484 485 0.110554 GGTTACATGCGCGTTTCGTT 60.111 50.000 8.43 0.00 41.07 3.85
502 503 4.109050 TCGTTCCAAGCACAAATGTTTTC 58.891 39.130 0.00 0.00 0.00 2.29
505 506 4.998671 TCCAAGCACAAATGTTTTCTGA 57.001 36.364 0.00 0.00 0.00 3.27
510 511 5.070770 AGCACAAATGTTTTCTGAACACA 57.929 34.783 11.37 11.37 32.37 3.72
514 515 7.927629 AGCACAAATGTTTTCTGAACACATATT 59.072 29.630 19.24 13.55 30.74 1.28
561 562 1.197721 GATGCAAAGACAGGTCAACCG 59.802 52.381 1.84 0.00 42.08 4.44
567 568 1.079336 GACAGGTCAACCGGCTACC 60.079 63.158 0.00 6.89 42.08 3.18
586 587 4.592485 ACCGATGACTGGATTAGCTTAG 57.408 45.455 0.00 0.00 0.00 2.18
587 588 4.215908 ACCGATGACTGGATTAGCTTAGA 58.784 43.478 0.00 0.00 0.00 2.10
588 589 4.038162 ACCGATGACTGGATTAGCTTAGAC 59.962 45.833 0.00 0.00 0.00 2.59
589 590 4.038042 CCGATGACTGGATTAGCTTAGACA 59.962 45.833 0.00 0.00 0.00 3.41
590 591 4.979197 CGATGACTGGATTAGCTTAGACAC 59.021 45.833 0.00 0.00 0.00 3.67
593 594 4.160439 TGACTGGATTAGCTTAGACACCAG 59.840 45.833 0.00 0.00 45.78 4.00
594 595 4.744795 CTGGATTAGCTTAGACACCAGT 57.255 45.455 0.00 0.00 38.67 4.00
598 599 4.323562 GGATTAGCTTAGACACCAGTGGTT 60.324 45.833 13.62 4.23 31.02 3.67
599 600 2.550830 AGCTTAGACACCAGTGGTTG 57.449 50.000 13.62 11.00 31.02 3.77
601 602 2.969950 AGCTTAGACACCAGTGGTTGTA 59.030 45.455 13.62 4.75 31.02 2.41
602 603 3.006967 AGCTTAGACACCAGTGGTTGTAG 59.993 47.826 13.62 9.81 31.02 2.74
603 604 3.006537 GCTTAGACACCAGTGGTTGTAGA 59.993 47.826 13.62 3.46 31.02 2.59
605 606 5.794894 CTTAGACACCAGTGGTTGTAGAAT 58.205 41.667 13.62 4.76 31.02 2.40
611 615 3.818773 ACCAGTGGTTGTAGAATTTTCCG 59.181 43.478 9.70 0.00 27.29 4.30
678 682 0.902516 GACAGAGGAGCTCCAGTGGT 60.903 60.000 33.90 24.17 38.89 4.16
684 688 4.874521 AGCTCCAGTGGTAGCTCA 57.125 55.556 22.87 0.00 45.92 4.26
693 697 3.195610 CCAGTGGTAGCTCAGTAATGTGA 59.804 47.826 0.00 0.00 0.00 3.58
694 698 4.177026 CAGTGGTAGCTCAGTAATGTGAC 58.823 47.826 0.00 0.00 0.00 3.67
719 723 5.239525 ACTGTCAGGTTTGATTGCTAGTTTC 59.760 40.000 4.53 0.00 35.39 2.78
724 728 5.940470 CAGGTTTGATTGCTAGTTTCCTACT 59.060 40.000 0.00 0.00 41.04 2.57
725 729 5.940470 AGGTTTGATTGCTAGTTTCCTACTG 59.060 40.000 0.00 0.00 37.73 2.74
726 730 5.705905 GGTTTGATTGCTAGTTTCCTACTGT 59.294 40.000 0.00 0.00 37.73 3.55
728 732 7.148457 GGTTTGATTGCTAGTTTCCTACTGTAC 60.148 40.741 0.00 0.00 37.73 2.90
729 733 5.974108 TGATTGCTAGTTTCCTACTGTACC 58.026 41.667 0.00 0.00 37.73 3.34
730 734 5.482526 TGATTGCTAGTTTCCTACTGTACCA 59.517 40.000 0.00 0.00 37.73 3.25
731 735 5.401531 TTGCTAGTTTCCTACTGTACCAG 57.598 43.478 0.00 0.00 37.73 4.00
733 737 5.269991 TGCTAGTTTCCTACTGTACCAGAT 58.730 41.667 0.00 0.00 37.73 2.90
735 739 6.320672 TGCTAGTTTCCTACTGTACCAGATAC 59.679 42.308 0.00 0.00 37.73 2.24
737 741 7.147949 GCTAGTTTCCTACTGTACCAGATACAA 60.148 40.741 0.00 0.00 43.35 2.41
738 742 7.549147 AGTTTCCTACTGTACCAGATACAAA 57.451 36.000 0.00 0.00 43.35 2.83
739 743 7.612677 AGTTTCCTACTGTACCAGATACAAAG 58.387 38.462 0.00 0.00 43.35 2.77
740 744 7.234988 AGTTTCCTACTGTACCAGATACAAAGT 59.765 37.037 0.00 0.00 43.35 2.66
741 745 7.549147 TTCCTACTGTACCAGATACAAAGTT 57.451 36.000 0.00 0.00 43.35 2.66
742 746 8.654485 TTCCTACTGTACCAGATACAAAGTTA 57.346 34.615 0.00 0.00 43.35 2.24
743 747 8.654485 TCCTACTGTACCAGATACAAAGTTAA 57.346 34.615 0.00 0.00 43.35 2.01
744 748 8.746530 TCCTACTGTACCAGATACAAAGTTAAG 58.253 37.037 0.00 0.00 43.35 1.85
745 749 8.529476 CCTACTGTACCAGATACAAAGTTAAGT 58.471 37.037 0.00 0.00 43.35 2.24
748 752 9.871238 ACTGTACCAGATACAAAGTTAAGTATG 57.129 33.333 5.82 0.00 43.35 2.39
779 791 0.536460 TCCAAGGCACCGAAAACCTC 60.536 55.000 0.00 0.00 31.86 3.85
783 795 0.693049 AGGCACCGAAAACCTCTGAT 59.307 50.000 0.00 0.00 0.00 2.90
803 815 4.019501 TGATTTTGGGATGAATTTGGGGTG 60.020 41.667 0.00 0.00 0.00 4.61
862 877 3.829886 TCTGAATTTGACCGACAATGC 57.170 42.857 0.00 0.00 38.36 3.56
866 881 0.447801 ATTTGACCGACAATGCGAGC 59.552 50.000 0.00 0.00 38.36 5.03
868 883 1.014044 TTGACCGACAATGCGAGCTC 61.014 55.000 2.73 2.73 33.18 4.09
923 941 2.642700 CACTCAAAAACCCCGCGG 59.357 61.111 21.04 21.04 0.00 6.46
925 943 2.983592 CTCAAAAACCCCGCGGCT 60.984 61.111 22.85 3.02 0.00 5.52
938 956 3.132139 CGGCTCCTTCCGTCGAGA 61.132 66.667 0.00 0.00 44.18 4.04
939 957 2.697761 CGGCTCCTTCCGTCGAGAA 61.698 63.158 0.00 0.00 44.18 2.87
940 958 1.590147 GGCTCCTTCCGTCGAGAAA 59.410 57.895 0.00 0.00 0.00 2.52
941 959 0.037605 GGCTCCTTCCGTCGAGAAAA 60.038 55.000 0.00 0.00 0.00 2.29
942 960 1.351153 GCTCCTTCCGTCGAGAAAAG 58.649 55.000 0.00 0.00 0.00 2.27
943 961 1.067776 GCTCCTTCCGTCGAGAAAAGA 60.068 52.381 0.00 0.00 0.00 2.52
944 962 2.597520 CTCCTTCCGTCGAGAAAAGAC 58.402 52.381 0.00 0.00 35.41 3.01
952 970 0.039798 TCGAGAAAAGACGGACACGG 60.040 55.000 0.00 0.00 46.48 4.94
984 1002 1.336755 ACGCACACACAAAAATCCCTC 59.663 47.619 0.00 0.00 0.00 4.30
987 1005 1.269448 CACACACAAAAATCCCTCCCG 59.731 52.381 0.00 0.00 0.00 5.14
989 1007 1.269448 CACACAAAAATCCCTCCCGTG 59.731 52.381 0.00 0.00 0.00 4.94
1374 1403 2.551071 CCAGGTGAGGTGACCTTCTTTC 60.551 54.545 5.21 0.00 44.53 2.62
1375 1404 1.344763 AGGTGAGGTGACCTTCTTTCG 59.655 52.381 5.21 0.00 44.53 3.46
1559 1603 0.393537 CCATTCTCCAGCCACAGGTC 60.394 60.000 0.00 0.00 0.00 3.85
1572 1622 1.394151 CAGGTCCCTCCTCCTCCTT 59.606 63.158 0.00 0.00 46.24 3.36
1576 1626 1.199615 GTCCCTCCTCCTCCTTCTTG 58.800 60.000 0.00 0.00 0.00 3.02
1578 1628 1.199615 CCCTCCTCCTCCTTCTTGTC 58.800 60.000 0.00 0.00 0.00 3.18
1579 1629 1.273552 CCCTCCTCCTCCTTCTTGTCT 60.274 57.143 0.00 0.00 0.00 3.41
1580 1630 2.107366 CCTCCTCCTCCTTCTTGTCTC 58.893 57.143 0.00 0.00 0.00 3.36
1581 1631 2.107366 CTCCTCCTCCTTCTTGTCTCC 58.893 57.143 0.00 0.00 0.00 3.71
1582 1632 1.433199 TCCTCCTCCTTCTTGTCTCCA 59.567 52.381 0.00 0.00 0.00 3.86
1583 1633 1.552792 CCTCCTCCTTCTTGTCTCCAC 59.447 57.143 0.00 0.00 0.00 4.02
1584 1634 2.251818 CTCCTCCTTCTTGTCTCCACA 58.748 52.381 0.00 0.00 0.00 4.17
1585 1635 2.634940 CTCCTCCTTCTTGTCTCCACAA 59.365 50.000 0.00 0.00 40.40 3.33
1586 1636 3.251484 TCCTCCTTCTTGTCTCCACAAT 58.749 45.455 0.00 0.00 41.82 2.71
1589 1639 5.309543 TCCTCCTTCTTGTCTCCACAATTTA 59.690 40.000 0.00 0.00 41.82 1.40
1645 1695 5.106237 GCATTGCATCAAAGGCCAAAAATTA 60.106 36.000 5.01 0.00 0.00 1.40
1646 1696 6.404954 GCATTGCATCAAAGGCCAAAAATTAT 60.405 34.615 5.01 0.00 0.00 1.28
1647 1697 7.540299 CATTGCATCAAAGGCCAAAAATTATT 58.460 30.769 5.01 0.00 0.00 1.40
1688 1738 6.476380 CAGCTGTTCATTGTTATCTCTCTCTC 59.524 42.308 5.25 0.00 0.00 3.20
1689 1739 6.380846 AGCTGTTCATTGTTATCTCTCTCTCT 59.619 38.462 0.00 0.00 0.00 3.10
1690 1740 6.697019 GCTGTTCATTGTTATCTCTCTCTCTC 59.303 42.308 0.00 0.00 0.00 3.20
1691 1741 7.416664 GCTGTTCATTGTTATCTCTCTCTCTCT 60.417 40.741 0.00 0.00 0.00 3.10
1739 1789 1.505353 GCAGCTGCATTCCTCACAC 59.495 57.895 33.36 0.00 41.59 3.82
1740 1790 1.239296 GCAGCTGCATTCCTCACACA 61.239 55.000 33.36 0.00 41.59 3.72
1741 1791 0.520404 CAGCTGCATTCCTCACACAC 59.480 55.000 0.00 0.00 0.00 3.82
1742 1792 0.109153 AGCTGCATTCCTCACACACA 59.891 50.000 1.02 0.00 0.00 3.72
1743 1793 0.239347 GCTGCATTCCTCACACACAC 59.761 55.000 0.00 0.00 0.00 3.82
1744 1794 1.596603 CTGCATTCCTCACACACACA 58.403 50.000 0.00 0.00 0.00 3.72
1745 1795 1.948834 CTGCATTCCTCACACACACAA 59.051 47.619 0.00 0.00 0.00 3.33
1746 1796 2.358582 CTGCATTCCTCACACACACAAA 59.641 45.455 0.00 0.00 0.00 2.83
1747 1797 2.757314 TGCATTCCTCACACACACAAAA 59.243 40.909 0.00 0.00 0.00 2.44
1748 1798 3.194329 TGCATTCCTCACACACACAAAAA 59.806 39.130 0.00 0.00 0.00 1.94
1833 1899 0.595095 CTTGTTGAAGGCAGCTGGAC 59.405 55.000 17.12 0.00 0.00 4.02
1839 1905 2.250741 GAAGGCAGCTGGACTCCTCC 62.251 65.000 17.12 5.98 28.41 4.30
1871 1937 4.983275 CAAGAGCTTGCTTGCTTAGGCAT 61.983 47.826 0.00 0.00 44.17 4.40
1872 1938 6.965988 CAAGAGCTTGCTTGCTTAGGCATG 62.966 50.000 0.00 4.16 44.17 4.06
1950 2017 1.141053 GTTTCTGAGGCCATACGGGAT 59.859 52.381 5.01 0.00 40.01 3.85
1978 2045 1.282248 AAGCGATCAACACCGACACG 61.282 55.000 0.00 0.00 0.00 4.49
1987 2054 1.081641 CACCGACACGTTACGAGCT 60.082 57.895 13.03 0.00 0.00 4.09
2024 2091 6.407202 ACACTGCCTTACTTTAATCAGGTAG 58.593 40.000 1.07 1.07 42.99 3.18
2053 2120 3.219281 TCCACCAAAAACTAGTTCCAGC 58.781 45.455 8.95 0.00 0.00 4.85
2054 2121 2.955660 CCACCAAAAACTAGTTCCAGCA 59.044 45.455 8.95 0.00 0.00 4.41
2067 2138 1.453379 CCAGCATGCCTTCTCCCTG 60.453 63.158 15.66 2.94 31.97 4.45
2123 2206 4.142609 AGAAGCAAAGACTTGTCACTCA 57.857 40.909 3.49 0.00 34.79 3.41
2175 2258 4.513318 GGCATGGTAGAGATCAGTTTTAGC 59.487 45.833 0.00 0.00 0.00 3.09
2201 2284 4.935808 GTGTTATGGTCTTACTCTTGTGGG 59.064 45.833 0.00 0.00 0.00 4.61
2220 2308 2.550208 GGGTAATGGATAAGCACCTCCG 60.550 54.545 0.00 0.00 34.05 4.63
2378 2472 1.605232 TGTCGACGACTTGAGTTAGCA 59.395 47.619 26.86 1.53 33.15 3.49
2380 2474 0.975544 CGACGACTTGAGTTAGCACG 59.024 55.000 0.00 0.00 0.00 5.34
2405 2500 3.812053 ACTGATATAGACGGTGTCGGTAC 59.188 47.826 0.00 0.00 41.39 3.34
2448 2547 3.063452 CCCACCGTGAATTCGTTTATCTG 59.937 47.826 0.00 0.00 0.00 2.90
2456 2555 7.537306 CCGTGAATTCGTTTATCTGAATTTTGT 59.463 33.333 0.04 0.00 43.01 2.83
2457 2556 8.901748 CGTGAATTCGTTTATCTGAATTTTGTT 58.098 29.630 0.04 0.00 43.01 2.83
2491 2592 5.123661 TGAAATCAGAACAGCAAATCGCATA 59.876 36.000 0.00 0.00 46.13 3.14
2497 2598 1.393539 ACAGCAAATCGCATACACGAC 59.606 47.619 0.00 0.00 46.28 4.34
2500 2601 1.201877 GCAAATCGCATACACGACGTT 60.202 47.619 0.00 0.00 46.28 3.99
2586 2692 1.999735 GTGTACCGTGGTGATGTGATG 59.000 52.381 0.72 0.00 0.00 3.07
2725 2831 6.803154 AGTCAATAGTCTGCTTTTTACACC 57.197 37.500 0.00 0.00 0.00 4.16
2833 2977 9.844790 CTAGAGATCACATATCTTGATGAAGAC 57.155 37.037 0.00 0.00 41.12 3.01
2879 3023 2.360165 CCAATGGCTTCTTATGTGGAGC 59.640 50.000 0.00 0.00 0.00 4.70
2936 3080 4.142026 CCCACACTATTCTCCATCGTTACA 60.142 45.833 0.00 0.00 0.00 2.41
3126 3272 5.104277 CCATGTAATTTGTACCCTCCCAGTA 60.104 44.000 0.00 0.00 0.00 2.74
3198 3344 3.127548 GGATGTCTGTATGCAGTGTTTGG 59.872 47.826 10.80 0.00 43.05 3.28
3199 3345 1.879380 TGTCTGTATGCAGTGTTTGGC 59.121 47.619 10.80 0.00 43.05 4.52
3213 3359 2.433970 TGTTTGGCTTTTTGGGGAAGAG 59.566 45.455 0.00 0.00 0.00 2.85
3217 3363 3.586429 TGGCTTTTTGGGGAAGAGAATT 58.414 40.909 0.00 0.00 0.00 2.17
3251 3397 5.005740 TGTACTGATGCTGCTTGAAATCTT 58.994 37.500 0.00 0.00 0.00 2.40
3312 3458 0.874390 TTGTTCGTGCTGAAGATGGC 59.126 50.000 0.00 0.00 37.23 4.40
3346 3492 9.897744 TTATACCGAGTTCCGTTGTAATAATAG 57.102 33.333 0.00 0.00 36.31 1.73
3347 3493 6.212888 ACCGAGTTCCGTTGTAATAATAGT 57.787 37.500 0.00 0.00 36.31 2.12
3350 3496 6.361748 CCGAGTTCCGTTGTAATAATAGTAGC 59.638 42.308 0.00 0.00 36.31 3.58
3351 3497 7.137426 CGAGTTCCGTTGTAATAATAGTAGCT 58.863 38.462 0.00 0.00 0.00 3.32
3352 3498 8.285394 CGAGTTCCGTTGTAATAATAGTAGCTA 58.715 37.037 0.00 0.00 0.00 3.32
3353 3499 9.956720 GAGTTCCGTTGTAATAATAGTAGCTAA 57.043 33.333 0.00 0.00 0.00 3.09
3357 3503 9.199982 TCCGTTGTAATAATAGTAGCTAAATGC 57.800 33.333 0.00 0.00 43.29 3.56
3358 3504 8.440833 CCGTTGTAATAATAGTAGCTAAATGCC 58.559 37.037 0.00 0.00 44.23 4.40
3359 3505 9.204570 CGTTGTAATAATAGTAGCTAAATGCCT 57.795 33.333 0.00 0.00 44.23 4.75
3368 3514 9.495572 AATAGTAGCTAAATGCCTACAAGAATC 57.504 33.333 0.00 0.00 44.23 2.52
3369 3515 6.889198 AGTAGCTAAATGCCTACAAGAATCA 58.111 36.000 0.00 0.00 44.23 2.57
3370 3516 6.989169 AGTAGCTAAATGCCTACAAGAATCAG 59.011 38.462 0.00 0.00 44.23 2.90
3371 3517 5.128919 AGCTAAATGCCTACAAGAATCAGG 58.871 41.667 0.00 0.00 44.23 3.86
3372 3518 4.884164 GCTAAATGCCTACAAGAATCAGGT 59.116 41.667 0.00 0.00 35.15 4.00
3373 3519 5.220931 GCTAAATGCCTACAAGAATCAGGTG 60.221 44.000 0.00 0.00 35.15 4.00
3374 3520 4.307032 AATGCCTACAAGAATCAGGTGT 57.693 40.909 0.00 0.00 0.00 4.16
3375 3521 3.334583 TGCCTACAAGAATCAGGTGTC 57.665 47.619 0.00 0.00 0.00 3.67
3376 3522 2.637382 TGCCTACAAGAATCAGGTGTCA 59.363 45.455 0.00 0.00 0.00 3.58
3377 3523 3.072330 TGCCTACAAGAATCAGGTGTCAA 59.928 43.478 0.00 0.00 0.00 3.18
3378 3524 3.437049 GCCTACAAGAATCAGGTGTCAAC 59.563 47.826 0.00 0.00 0.00 3.18
3379 3525 4.804261 GCCTACAAGAATCAGGTGTCAACT 60.804 45.833 0.00 0.00 0.00 3.16
3380 3526 5.568825 GCCTACAAGAATCAGGTGTCAACTA 60.569 44.000 0.00 0.00 0.00 2.24
3381 3527 6.644347 CCTACAAGAATCAGGTGTCAACTAT 58.356 40.000 0.00 0.00 0.00 2.12
3382 3528 6.758886 CCTACAAGAATCAGGTGTCAACTATC 59.241 42.308 0.00 0.00 0.00 2.08
3453 3599 1.298859 CTTTTTCCCGTCCTGAGGCG 61.299 60.000 8.09 8.09 0.00 5.52
3500 3646 6.100004 TGTTTGAGCTTAGTCTATACAGCAC 58.900 40.000 5.13 0.12 34.49 4.40
3521 3667 5.620654 GCACATAGCACATTTGAACTGACAT 60.621 40.000 0.00 0.00 44.79 3.06
3821 4016 8.893727 GCTACATCATTAAACTCAACACCTTAT 58.106 33.333 0.00 0.00 0.00 1.73
3942 4704 5.103290 ACCTTGTGTAAAAATGTGCTACG 57.897 39.130 0.00 0.00 0.00 3.51
4002 4765 2.827322 AGTTAGCATCAGCCAATTGCAA 59.173 40.909 0.00 0.00 44.83 4.08
4004 4767 2.088950 AGCATCAGCCAATTGCAAAC 57.911 45.000 1.71 0.00 44.83 2.93
4227 6981 8.994170 GCTTAATCTCAAAAAGAGTCTTACAGT 58.006 33.333 5.65 0.00 44.98 3.55
4296 9024 1.455032 GGGGGTTAAGATTGCCCGG 60.455 63.158 0.00 0.00 43.23 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.115378 GCAATGTTCAGTTCATTTTCGAAGAAT 59.885 33.333 0.00 0.00 36.05 2.40
24 25 3.996363 GGGGCAATGTTCAGTTCATTTTC 59.004 43.478 0.00 0.00 33.92 2.29
82 83 3.831911 GGATCTCCTTCATCCTCTCGATT 59.168 47.826 0.00 0.00 37.44 3.34
85 86 1.539388 CGGATCTCCTTCATCCTCTCG 59.461 57.143 0.00 0.00 38.18 4.04
178 179 0.476611 AAGCCCTCTTCCCCTTGAGT 60.477 55.000 0.00 0.00 0.00 3.41
281 282 1.380524 AGTAGCGTCGTGATGTAGCT 58.619 50.000 0.00 0.00 41.45 3.32
300 301 4.364817 CCGGAGCAACAAACGGTA 57.635 55.556 0.00 0.00 41.34 4.02
304 305 0.040067 CTTGAGCCGGAGCAACAAAC 60.040 55.000 5.05 0.00 43.56 2.93
307 308 0.465460 AAACTTGAGCCGGAGCAACA 60.465 50.000 5.05 0.00 43.56 3.33
309 310 0.889186 GGAAACTTGAGCCGGAGCAA 60.889 55.000 5.05 7.52 43.56 3.91
311 312 0.678048 ATGGAAACTTGAGCCGGAGC 60.678 55.000 5.05 0.00 40.32 4.70
317 318 0.169009 GACGGCATGGAAACTTGAGC 59.831 55.000 0.00 0.00 37.69 4.26
318 319 0.443869 CGACGGCATGGAAACTTGAG 59.556 55.000 0.00 0.00 37.69 3.02
348 349 3.985127 TCCGACCATATCCCCGTAATAT 58.015 45.455 0.00 0.00 0.00 1.28
350 351 2.314071 TCCGACCATATCCCCGTAAT 57.686 50.000 0.00 0.00 0.00 1.89
351 352 1.897133 CATCCGACCATATCCCCGTAA 59.103 52.381 0.00 0.00 0.00 3.18
352 353 1.552578 CATCCGACCATATCCCCGTA 58.447 55.000 0.00 0.00 0.00 4.02
353 354 1.827399 GCATCCGACCATATCCCCGT 61.827 60.000 0.00 0.00 0.00 5.28
354 355 1.079127 GCATCCGACCATATCCCCG 60.079 63.158 0.00 0.00 0.00 5.73
380 381 9.677567 GAGAAGAGATGTCATGACTATAAACTC 57.322 37.037 25.55 17.42 0.00 3.01
438 439 8.582657 TGATGATTTACCCTTTATCGGAAAAA 57.417 30.769 0.00 0.00 0.00 1.94
439 440 8.582657 TTGATGATTTACCCTTTATCGGAAAA 57.417 30.769 0.00 0.00 0.00 2.29
440 441 7.284489 CCTTGATGATTTACCCTTTATCGGAAA 59.716 37.037 0.00 0.00 0.00 3.13
441 442 6.770785 CCTTGATGATTTACCCTTTATCGGAA 59.229 38.462 0.00 0.00 0.00 4.30
442 443 6.126594 ACCTTGATGATTTACCCTTTATCGGA 60.127 38.462 0.00 0.00 0.00 4.55
443 444 6.062095 ACCTTGATGATTTACCCTTTATCGG 58.938 40.000 0.00 0.00 0.00 4.18
444 445 7.568199 AACCTTGATGATTTACCCTTTATCG 57.432 36.000 0.00 0.00 0.00 2.92
445 446 9.403583 TGTAACCTTGATGATTTACCCTTTATC 57.596 33.333 0.00 0.00 0.00 1.75
446 447 9.936329 ATGTAACCTTGATGATTTACCCTTTAT 57.064 29.630 0.00 0.00 0.00 1.40
447 448 9.184523 CATGTAACCTTGATGATTTACCCTTTA 57.815 33.333 0.00 0.00 0.00 1.85
448 449 7.363793 GCATGTAACCTTGATGATTTACCCTTT 60.364 37.037 0.00 0.00 0.00 3.11
449 450 6.096846 GCATGTAACCTTGATGATTTACCCTT 59.903 38.462 0.00 0.00 0.00 3.95
450 451 5.594317 GCATGTAACCTTGATGATTTACCCT 59.406 40.000 0.00 0.00 0.00 4.34
451 452 5.505654 CGCATGTAACCTTGATGATTTACCC 60.506 44.000 0.00 0.00 0.00 3.69
452 453 5.510671 CGCATGTAACCTTGATGATTTACC 58.489 41.667 0.00 0.00 0.00 2.85
453 454 4.970003 GCGCATGTAACCTTGATGATTTAC 59.030 41.667 0.30 0.00 0.00 2.01
484 485 4.998671 TCAGAAAACATTTGTGCTTGGA 57.001 36.364 0.00 0.00 0.00 3.53
561 562 2.610727 GCTAATCCAGTCATCGGTAGCC 60.611 54.545 0.00 0.00 0.00 3.93
567 568 4.979197 GTGTCTAAGCTAATCCAGTCATCG 59.021 45.833 0.00 0.00 0.00 3.84
577 578 4.041691 ACAACCACTGGTGTCTAAGCTAAT 59.958 41.667 0.00 0.00 35.34 1.73
586 587 5.278315 GGAAAATTCTACAACCACTGGTGTC 60.278 44.000 0.00 0.00 35.34 3.67
587 588 4.583073 GGAAAATTCTACAACCACTGGTGT 59.417 41.667 0.00 5.14 35.34 4.16
588 589 4.320202 CGGAAAATTCTACAACCACTGGTG 60.320 45.833 0.00 0.00 35.34 4.17
589 590 3.818773 CGGAAAATTCTACAACCACTGGT 59.181 43.478 0.00 0.00 37.65 4.00
590 591 4.069304 TCGGAAAATTCTACAACCACTGG 58.931 43.478 0.00 0.00 0.00 4.00
593 594 4.857037 GCAATCGGAAAATTCTACAACCAC 59.143 41.667 0.00 0.00 0.00 4.16
594 595 4.082463 GGCAATCGGAAAATTCTACAACCA 60.082 41.667 0.00 0.00 0.00 3.67
598 599 5.649557 CAATGGCAATCGGAAAATTCTACA 58.350 37.500 0.00 0.00 0.00 2.74
599 600 4.504097 GCAATGGCAATCGGAAAATTCTAC 59.496 41.667 0.00 0.00 40.72 2.59
601 602 3.524541 GCAATGGCAATCGGAAAATTCT 58.475 40.909 0.00 0.00 40.72 2.40
602 603 3.931285 GCAATGGCAATCGGAAAATTC 57.069 42.857 0.00 0.00 40.72 2.17
632 636 3.188492 TGCAAACAAAATGACTGCACAG 58.812 40.909 0.00 0.00 35.05 3.66
678 682 4.522789 TGACAGTGTCACATTACTGAGCTA 59.477 41.667 22.06 0.00 45.46 3.32
684 688 4.689612 AACCTGACAGTGTCACATTACT 57.310 40.909 22.06 1.26 37.67 2.24
693 697 2.936202 AGCAATCAAACCTGACAGTGT 58.064 42.857 0.00 0.00 33.30 3.55
694 698 4.067896 ACTAGCAATCAAACCTGACAGTG 58.932 43.478 0.93 0.00 33.30 3.66
724 728 9.865321 GACATACTTAACTTTGTATCTGGTACA 57.135 33.333 0.00 0.00 41.46 2.90
725 729 9.865321 TGACATACTTAACTTTGTATCTGGTAC 57.135 33.333 0.00 0.00 0.00 3.34
728 732 8.338259 GCATGACATACTTAACTTTGTATCTGG 58.662 37.037 0.00 0.00 0.00 3.86
729 733 8.882736 TGCATGACATACTTAACTTTGTATCTG 58.117 33.333 0.00 0.00 0.00 2.90
730 734 9.448438 TTGCATGACATACTTAACTTTGTATCT 57.552 29.630 0.00 0.00 0.00 1.98
737 741 8.584157 TGGATTTTTGCATGACATACTTAACTT 58.416 29.630 0.00 0.00 0.00 2.66
738 742 8.121305 TGGATTTTTGCATGACATACTTAACT 57.879 30.769 0.00 0.00 0.00 2.24
739 743 8.755696 TTGGATTTTTGCATGACATACTTAAC 57.244 30.769 0.00 0.00 0.00 2.01
740 744 8.034215 CCTTGGATTTTTGCATGACATACTTAA 58.966 33.333 0.00 0.00 0.00 1.85
741 745 7.546358 CCTTGGATTTTTGCATGACATACTTA 58.454 34.615 0.00 0.00 0.00 2.24
742 746 6.400568 CCTTGGATTTTTGCATGACATACTT 58.599 36.000 0.00 0.00 0.00 2.24
743 747 5.625197 GCCTTGGATTTTTGCATGACATACT 60.625 40.000 0.00 0.00 0.00 2.12
744 748 4.567959 GCCTTGGATTTTTGCATGACATAC 59.432 41.667 0.00 0.00 0.00 2.39
745 749 4.222366 TGCCTTGGATTTTTGCATGACATA 59.778 37.500 0.00 0.00 0.00 2.29
746 750 3.008157 TGCCTTGGATTTTTGCATGACAT 59.992 39.130 0.00 0.00 0.00 3.06
747 751 2.367894 TGCCTTGGATTTTTGCATGACA 59.632 40.909 0.00 0.00 0.00 3.58
748 752 2.738314 GTGCCTTGGATTTTTGCATGAC 59.262 45.455 0.00 0.00 34.04 3.06
779 791 4.225717 ACCCCAAATTCATCCCAAAATCAG 59.774 41.667 0.00 0.00 0.00 2.90
783 795 3.321950 ACACCCCAAATTCATCCCAAAA 58.678 40.909 0.00 0.00 0.00 2.44
803 815 7.360361 ACTTTGCACAAAATTACTACTGCTAC 58.640 34.615 0.00 0.00 0.00 3.58
882 900 3.083848 TATAGCGCGTGGGGTGGTG 62.084 63.158 8.43 0.00 37.45 4.17
883 901 2.760799 TATAGCGCGTGGGGTGGT 60.761 61.111 8.43 0.00 40.53 4.16
923 941 1.067776 TCTTTTCTCGACGGAAGGAGC 60.068 52.381 0.00 0.00 0.00 4.70
925 943 2.719426 GTCTTTTCTCGACGGAAGGA 57.281 50.000 0.00 0.00 0.00 3.36
932 950 1.050767 CGTGTCCGTCTTTTCTCGAC 58.949 55.000 0.00 0.00 0.00 4.20
933 951 0.039798 CCGTGTCCGTCTTTTCTCGA 60.040 55.000 0.00 0.00 0.00 4.04
935 953 0.319641 AGCCGTGTCCGTCTTTTCTC 60.320 55.000 0.00 0.00 0.00 2.87
936 954 0.600255 CAGCCGTGTCCGTCTTTTCT 60.600 55.000 0.00 0.00 0.00 2.52
937 955 1.860078 CAGCCGTGTCCGTCTTTTC 59.140 57.895 0.00 0.00 0.00 2.29
938 956 2.251642 GCAGCCGTGTCCGTCTTTT 61.252 57.895 0.00 0.00 0.00 2.27
939 957 2.665185 GCAGCCGTGTCCGTCTTT 60.665 61.111 0.00 0.00 0.00 2.52
968 986 1.133606 ACGGGAGGGATTTTTGTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
1559 1603 1.199615 GACAAGAAGGAGGAGGAGGG 58.800 60.000 0.00 0.00 0.00 4.30
1601 1651 4.329392 TGCATCACATCACAGAGAAACAT 58.671 39.130 0.00 0.00 0.00 2.71
1604 1654 4.380128 GCAATGCATCACATCACAGAGAAA 60.380 41.667 0.00 0.00 38.34 2.52
1688 1738 7.166851 AGGTGATGATTATTGCCATAAGAGAG 58.833 38.462 0.00 0.00 0.00 3.20
1689 1739 7.083062 AGGTGATGATTATTGCCATAAGAGA 57.917 36.000 0.00 0.00 0.00 3.10
1690 1740 8.853077 TTAGGTGATGATTATTGCCATAAGAG 57.147 34.615 0.00 0.00 0.00 2.85
1691 1741 7.391554 GCTTAGGTGATGATTATTGCCATAAGA 59.608 37.037 0.00 0.00 0.00 2.10
1833 1899 3.432890 GCTCTTGTCTATTTGGGGAGGAG 60.433 52.174 0.00 0.00 0.00 3.69
1839 1905 3.350833 AGCAAGCTCTTGTCTATTTGGG 58.649 45.455 10.86 0.00 42.31 4.12
1863 1929 6.533730 TCCAACAGGATAATACATGCCTAAG 58.466 40.000 0.00 0.00 0.00 2.18
1871 1937 8.821686 ATGTGAAATTCCAACAGGATAATACA 57.178 30.769 0.00 0.00 0.00 2.29
1872 1938 9.520204 CAATGTGAAATTCCAACAGGATAATAC 57.480 33.333 0.00 0.00 0.00 1.89
1950 2017 3.438781 GGTGTTGATCGCTTGGTAAATCA 59.561 43.478 0.00 0.00 0.00 2.57
1978 2045 3.994392 TCTCCATGTTTTGAGCTCGTAAC 59.006 43.478 18.70 18.70 0.00 2.50
1987 2054 2.158623 AGGCAGTGTCTCCATGTTTTGA 60.159 45.455 0.00 0.00 0.00 2.69
2024 2091 9.037737 GGAACTAGTTTTTGGTGGAAATTAAAC 57.962 33.333 10.02 0.00 0.00 2.01
2098 2181 6.767902 TGAGTGACAAGTCTTTGCTTCTTAAT 59.232 34.615 1.53 0.00 37.85 1.40
2123 2206 4.602340 ATCGGTAAAGCATATCGTTCCT 57.398 40.909 2.70 0.00 0.00 3.36
2175 2258 6.092670 CCACAAGAGTAAGACCATAACACATG 59.907 42.308 0.00 0.00 0.00 3.21
2201 2284 3.746045 TCGGAGGTGCTTATCCATTAC 57.254 47.619 3.19 0.00 0.00 1.89
2220 2308 6.049790 ACGCATCTCCTTATCCTAACTTTTC 58.950 40.000 0.00 0.00 0.00 2.29
2378 2472 4.025396 CGACACCGTCTATATCAGTTACGT 60.025 45.833 0.00 0.00 31.87 3.57
2380 2474 4.274459 ACCGACACCGTCTATATCAGTTAC 59.726 45.833 0.00 0.00 0.00 2.50
2419 2515 1.329599 GAATTCACGGTGGGATAACGC 59.670 52.381 8.50 0.00 0.00 4.84
2448 2547 9.033481 TGATTTCAGAATGTGTCAACAAAATTC 57.967 29.630 9.96 9.96 40.46 2.17
2486 2587 0.179260 CCAACAACGTCGTGTATGCG 60.179 55.000 0.00 0.00 0.00 4.73
2491 2592 4.619437 AATTTTACCAACAACGTCGTGT 57.381 36.364 0.00 0.00 0.00 4.49
2957 3101 5.600669 ATCTTTTAGGGAGTGGGAGTTTT 57.399 39.130 0.00 0.00 0.00 2.43
2961 3106 9.695155 TTTTAATTATCTTTTAGGGAGTGGGAG 57.305 33.333 0.00 0.00 0.00 4.30
3120 3266 8.936864 CAAAACTATTCTACTTTGAGTACTGGG 58.063 37.037 0.00 0.00 31.77 4.45
3198 3344 6.701340 ACATAAATTCTCTTCCCCAAAAAGC 58.299 36.000 0.00 0.00 0.00 3.51
3199 3345 8.150296 ACAACATAAATTCTCTTCCCCAAAAAG 58.850 33.333 0.00 0.00 0.00 2.27
3213 3359 6.747280 GCATCAGTACACCACAACATAAATTC 59.253 38.462 0.00 0.00 0.00 2.17
3217 3363 4.694982 CAGCATCAGTACACCACAACATAA 59.305 41.667 0.00 0.00 0.00 1.90
3251 3397 0.112995 ACCCTGCAAATCCAGCAAGA 59.887 50.000 0.00 0.00 42.17 3.02
3312 3458 2.288640 GGAACTCGGTATAATGGGTCGG 60.289 54.545 0.00 0.00 0.00 4.79
3346 3492 6.203723 CCTGATTCTTGTAGGCATTTAGCTAC 59.796 42.308 0.00 0.00 44.79 3.58
3347 3493 6.126768 ACCTGATTCTTGTAGGCATTTAGCTA 60.127 38.462 0.00 0.00 44.79 3.32
3350 3496 5.882557 ACACCTGATTCTTGTAGGCATTTAG 59.117 40.000 0.00 0.00 34.93 1.85
3351 3497 5.815581 ACACCTGATTCTTGTAGGCATTTA 58.184 37.500 0.00 0.00 34.93 1.40
3352 3498 4.666512 ACACCTGATTCTTGTAGGCATTT 58.333 39.130 0.00 0.00 34.93 2.32
3353 3499 4.263462 TGACACCTGATTCTTGTAGGCATT 60.263 41.667 0.00 0.00 34.93 3.56
3354 3500 3.264193 TGACACCTGATTCTTGTAGGCAT 59.736 43.478 0.00 0.00 34.93 4.40
3355 3501 2.637382 TGACACCTGATTCTTGTAGGCA 59.363 45.455 0.00 0.00 34.93 4.75
3356 3502 3.334583 TGACACCTGATTCTTGTAGGC 57.665 47.619 0.00 0.00 34.93 3.93
3357 3503 4.899502 AGTTGACACCTGATTCTTGTAGG 58.100 43.478 0.00 0.00 37.61 3.18
3358 3504 7.551585 AGATAGTTGACACCTGATTCTTGTAG 58.448 38.462 0.00 0.00 0.00 2.74
3359 3505 7.482169 AGATAGTTGACACCTGATTCTTGTA 57.518 36.000 0.00 0.00 0.00 2.41
3360 3506 6.365970 AGATAGTTGACACCTGATTCTTGT 57.634 37.500 0.00 0.00 0.00 3.16
3361 3507 6.478344 GCTAGATAGTTGACACCTGATTCTTG 59.522 42.308 0.00 0.00 0.00 3.02
3362 3508 6.382570 AGCTAGATAGTTGACACCTGATTCTT 59.617 38.462 0.00 0.00 0.00 2.52
3363 3509 5.896678 AGCTAGATAGTTGACACCTGATTCT 59.103 40.000 0.00 0.00 0.00 2.40
3364 3510 6.155475 AGCTAGATAGTTGACACCTGATTC 57.845 41.667 0.00 0.00 0.00 2.52
3365 3511 7.661536 TTAGCTAGATAGTTGACACCTGATT 57.338 36.000 0.00 0.00 0.00 2.57
3366 3512 7.661536 TTTAGCTAGATAGTTGACACCTGAT 57.338 36.000 0.00 0.00 0.00 2.90
3367 3513 7.492524 CATTTAGCTAGATAGTTGACACCTGA 58.507 38.462 0.00 0.00 0.00 3.86
3368 3514 6.201806 GCATTTAGCTAGATAGTTGACACCTG 59.798 42.308 0.00 0.00 41.15 4.00
3369 3515 6.284459 GCATTTAGCTAGATAGTTGACACCT 58.716 40.000 0.00 0.00 41.15 4.00
3370 3516 6.532365 GCATTTAGCTAGATAGTTGACACC 57.468 41.667 0.00 0.00 41.15 4.16
3500 3646 7.755591 AGTTATGTCAGTTCAAATGTGCTATG 58.244 34.615 0.00 0.00 0.00 2.23
3521 3667 3.761752 TCGTCATGGACACATCTGAGTTA 59.238 43.478 0.00 0.00 34.35 2.24
3674 3840 8.044060 TCAATCATCTTGCTAAAACAAGGTAG 57.956 34.615 4.58 0.00 45.77 3.18
3749 3915 2.775418 TGGGCATTTCTCCTATCCAGA 58.225 47.619 0.00 0.00 0.00 3.86
3821 4016 3.118629 GCCTCTGTCTGATGTAACATGGA 60.119 47.826 0.00 0.00 0.00 3.41
3942 4704 2.627699 TGGACATGCCTTTTCAGAAACC 59.372 45.455 0.00 0.00 37.63 3.27
4148 4911 1.381327 CAGAGGAGCCGGAACCCTA 60.381 63.158 5.05 0.00 0.00 3.53
4279 9007 1.035385 CACCGGGCAATCTTAACCCC 61.035 60.000 6.32 0.00 40.86 4.95
4308 9036 0.463116 ACCGGTTTAGCTTATGGCCG 60.463 55.000 0.00 0.00 43.05 6.13
4313 9041 5.985911 AGTGTTATGACCGGTTTAGCTTAT 58.014 37.500 9.42 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.