Multiple sequence alignment - TraesCS4A01G271400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G271400 chr4A 100.000 6104 0 0 928 7031 583150113 583156216 0.000000e+00 11273.0
1 TraesCS4A01G271400 chr4A 100.000 680 0 0 1 680 583149186 583149865 0.000000e+00 1256.0
2 TraesCS4A01G271400 chr4A 87.097 62 8 0 4425 4486 330086765 330086826 3.520000e-08 71.3
3 TraesCS4A01G271400 chr4B 93.898 3835 151 36 2012 5791 29662589 29666395 0.000000e+00 5709.0
4 TraesCS4A01G271400 chr4B 91.488 1539 88 26 4411 5925 29711638 29710119 0.000000e+00 2076.0
5 TraesCS4A01G271400 chr4B 92.302 1286 57 14 932 2190 29715254 29713984 0.000000e+00 1788.0
6 TraesCS4A01G271400 chr4B 94.134 1108 45 6 2151 3256 29713984 29712895 0.000000e+00 1668.0
7 TraesCS4A01G271400 chr4B 92.343 1097 55 5 3347 4417 29712898 29711805 0.000000e+00 1533.0
8 TraesCS4A01G271400 chr4B 85.954 833 50 21 6238 7031 29709873 29709069 0.000000e+00 828.0
9 TraesCS4A01G271400 chr4B 84.906 848 47 33 6238 7031 29667353 29668173 0.000000e+00 782.0
10 TraesCS4A01G271400 chr4B 87.865 445 28 10 5801 6220 29666767 29667210 3.790000e-137 499.0
11 TraesCS4A01G271400 chr4B 85.745 463 58 6 41 499 29716091 29715633 3.810000e-132 483.0
12 TraesCS4A01G271400 chr4B 88.364 275 13 5 2828 3101 29662131 29662387 5.300000e-81 313.0
13 TraesCS4A01G271400 chr4B 95.238 126 6 0 1888 2013 29662382 29662507 4.300000e-47 200.0
14 TraesCS4A01G271400 chr4D 91.896 2764 163 29 3354 6091 17862388 17859660 0.000000e+00 3807.0
15 TraesCS4A01G271400 chr4D 93.594 2045 80 9 1322 3358 17864467 17862466 0.000000e+00 3003.0
16 TraesCS4A01G271400 chr4D 86.784 855 42 15 6238 7031 17758690 17759534 0.000000e+00 887.0
17 TraesCS4A01G271400 chr4D 88.125 480 38 13 168 637 17865747 17865277 2.870000e-153 553.0
18 TraesCS4A01G271400 chr4D 90.000 320 16 7 928 1235 17865242 17864927 3.950000e-107 399.0
19 TraesCS4A01G271400 chr4D 94.737 57 3 0 6105 6161 17758484 17758540 9.710000e-14 89.8
20 TraesCS4A01G271400 chr3D 90.958 2798 202 28 1667 4433 16622181 16619404 0.000000e+00 3718.0
21 TraesCS4A01G271400 chr3D 90.899 868 61 13 4487 5341 16619407 16618545 0.000000e+00 1149.0
22 TraesCS4A01G271400 chr3D 84.789 664 84 12 5376 6026 16618547 16617888 0.000000e+00 651.0
23 TraesCS4A01G271400 chr3D 83.333 636 52 25 1018 1622 16624065 16623453 8.020000e-149 538.0
24 TraesCS4A01G271400 chr3A 90.708 2798 210 27 1667 4433 20000163 20002941 0.000000e+00 3681.0
25 TraesCS4A01G271400 chr3A 90.255 862 64 13 4487 5335 20002938 20003792 0.000000e+00 1109.0
26 TraesCS4A01G271400 chr3A 85.133 639 49 20 998 1604 19998301 19998925 4.660000e-171 612.0
27 TraesCS4A01G271400 chr3A 87.158 475 57 4 5376 5848 20003796 20004268 2.890000e-148 536.0
28 TraesCS4A01G271400 chr3B 90.442 2804 199 35 1667 4433 24011746 24008975 0.000000e+00 3629.0
29 TraesCS4A01G271400 chr3B 90.690 870 61 14 4487 5341 24008978 24008114 0.000000e+00 1140.0
30 TraesCS4A01G271400 chr3B 83.576 755 95 20 5376 6105 24008116 24007366 0.000000e+00 680.0
31 TraesCS4A01G271400 chr3B 83.826 575 45 21 1073 1622 24013664 24013113 2.930000e-138 503.0
32 TraesCS4A01G271400 chr2D 95.410 610 24 1 1576 2181 408774178 408774787 0.000000e+00 968.0
33 TraesCS4A01G271400 chr2D 80.721 555 86 20 51 595 175751237 175750694 5.070000e-111 412.0
34 TraesCS4A01G271400 chr2D 79.690 581 94 22 27 595 174942600 174943168 1.420000e-106 398.0
35 TraesCS4A01G271400 chr2D 79.690 581 94 22 27 595 476466089 476466657 1.420000e-106 398.0
36 TraesCS4A01G271400 chr2A 93.517 617 34 3 1576 2188 606699270 606698656 0.000000e+00 913.0
37 TraesCS4A01G271400 chr2B 81.558 629 66 28 42 624 449108440 449109064 2.300000e-129 473.0
38 TraesCS4A01G271400 chr7A 80.805 646 75 28 26 624 64928194 64928837 1.790000e-125 460.0
39 TraesCS4A01G271400 chr1D 79.793 579 95 20 27 595 212083583 212084149 1.100000e-107 401.0
40 TraesCS4A01G271400 chr1D 86.638 232 31 0 5452 5683 462296687 462296456 2.520000e-64 257.0
41 TraesCS4A01G271400 chr1D 100.000 44 0 0 4434 4477 158099013 158098970 1.630000e-11 82.4
42 TraesCS4A01G271400 chr1D 91.228 57 4 1 4421 4476 218980348 218980292 7.560000e-10 76.8
43 TraesCS4A01G271400 chr6D 80.251 557 86 22 51 595 379511678 379511134 1.420000e-106 398.0
44 TraesCS4A01G271400 chr1B 84.906 212 24 2 5452 5663 637367220 637367017 2.570000e-49 207.0
45 TraesCS4A01G271400 chr1B 89.062 64 4 2 4437 4497 70317544 70317481 7.560000e-10 76.8
46 TraesCS4A01G271400 chr7B 94.340 53 3 0 4424 4476 569937980 569937928 1.630000e-11 82.4
47 TraesCS4A01G271400 chr7D 92.727 55 4 0 4712 4766 541498549 541498495 5.850000e-11 80.5
48 TraesCS4A01G271400 chr6A 89.655 58 6 0 4420 4477 150230050 150230107 2.720000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G271400 chr4A 583149186 583156216 7030 False 6264.5 11273 100.000000 1 7031 2 chr4A.!!$F2 7030
1 TraesCS4A01G271400 chr4B 29662131 29668173 6042 False 1500.6 5709 90.054200 1888 7031 5 chr4B.!!$F1 5143
2 TraesCS4A01G271400 chr4B 29709069 29716091 7022 True 1396.0 2076 90.327667 41 7031 6 chr4B.!!$R1 6990
3 TraesCS4A01G271400 chr4D 17859660 17865747 6087 True 1940.5 3807 90.903750 168 6091 4 chr4D.!!$R1 5923
4 TraesCS4A01G271400 chr4D 17758484 17759534 1050 False 488.4 887 90.760500 6105 7031 2 chr4D.!!$F1 926
5 TraesCS4A01G271400 chr3D 16617888 16624065 6177 True 1514.0 3718 87.494750 1018 6026 4 chr3D.!!$R1 5008
6 TraesCS4A01G271400 chr3A 19998301 20004268 5967 False 1484.5 3681 88.313500 998 5848 4 chr3A.!!$F1 4850
7 TraesCS4A01G271400 chr3B 24007366 24013664 6298 True 1488.0 3629 87.133500 1073 6105 4 chr3B.!!$R1 5032
8 TraesCS4A01G271400 chr2D 408774178 408774787 609 False 968.0 968 95.410000 1576 2181 1 chr2D.!!$F2 605
9 TraesCS4A01G271400 chr2D 175750694 175751237 543 True 412.0 412 80.721000 51 595 1 chr2D.!!$R1 544
10 TraesCS4A01G271400 chr2D 174942600 174943168 568 False 398.0 398 79.690000 27 595 1 chr2D.!!$F1 568
11 TraesCS4A01G271400 chr2D 476466089 476466657 568 False 398.0 398 79.690000 27 595 1 chr2D.!!$F3 568
12 TraesCS4A01G271400 chr2A 606698656 606699270 614 True 913.0 913 93.517000 1576 2188 1 chr2A.!!$R1 612
13 TraesCS4A01G271400 chr2B 449108440 449109064 624 False 473.0 473 81.558000 42 624 1 chr2B.!!$F1 582
14 TraesCS4A01G271400 chr7A 64928194 64928837 643 False 460.0 460 80.805000 26 624 1 chr7A.!!$F1 598
15 TraesCS4A01G271400 chr1D 212083583 212084149 566 False 401.0 401 79.793000 27 595 1 chr1D.!!$F1 568
16 TraesCS4A01G271400 chr6D 379511134 379511678 544 True 398.0 398 80.251000 51 595 1 chr6D.!!$R1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.892063 AGCTCCCTCTCGTCAAAGAC 59.108 55.000 0.00 0.0 0.00 3.01 F
646 716 1.082104 GAAGCCACGCCGTTTTCTG 60.082 57.895 0.00 0.0 0.00 3.02 F
1274 1553 1.138661 CATCTCTCCTGCTTCTCCACC 59.861 57.143 0.00 0.0 0.00 4.61 F
2062 4368 1.142748 AGTATGCTGCTCTGCCGAC 59.857 57.895 0.00 0.0 0.00 4.79 F
3020 5399 0.029300 TCGTTGCTCACTTGCTTTGC 59.971 50.000 0.00 0.0 0.00 3.68 F
3490 5952 2.358322 TGTGGTTTTCCTTCCAGGTC 57.642 50.000 0.00 0.0 41.38 3.85 F
4710 7399 0.182775 ACTGCAATACCGGATTCCCC 59.817 55.000 9.46 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1831 4054 0.964700 TGGTCAGAGCTCACAGTGAG 59.035 55.000 24.34 24.34 46.90 3.51 R
2593 4949 3.038280 TCCACCAGTTGAACTCTCAGAA 58.962 45.455 0.00 0.00 31.69 3.02 R
2870 5228 3.157087 AGTTTCCACACTTGCCATAAGG 58.843 45.455 0.00 0.00 38.23 2.69 R
3805 6278 0.898320 ATCACCCACCGACAGAGAAG 59.102 55.000 0.00 0.00 0.00 2.85 R
4147 6631 1.644509 AAGAAAAGGCACCCATTCCC 58.355 50.000 0.00 0.00 0.00 3.97 R
5450 8163 2.620367 CCCATTAGCCTTGGCAACTACA 60.620 50.000 14.54 0.00 32.60 2.74 R
6511 9814 0.032678 GCATGGATCAGGATCGTCGT 59.967 55.000 3.38 0.00 38.69 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.731295 GAGCTCCCTCTCGTCAAAG 57.269 57.895 0.87 0.00 35.16 2.77
20 21 1.178276 GAGCTCCCTCTCGTCAAAGA 58.822 55.000 0.87 0.00 35.16 2.52
21 22 0.892063 AGCTCCCTCTCGTCAAAGAC 59.108 55.000 0.00 0.00 0.00 3.01
23 24 2.093106 GCTCCCTCTCGTCAAAGACTA 58.907 52.381 0.00 0.00 0.00 2.59
24 25 2.691011 GCTCCCTCTCGTCAAAGACTAT 59.309 50.000 0.00 0.00 0.00 2.12
36 37 9.440784 CTCGTCAAAGACTATTACTAATCACTC 57.559 37.037 0.00 0.00 0.00 3.51
70 71 5.762825 TTCTAGTGATAGATTTACGGCGT 57.237 39.130 19.64 19.64 0.00 5.68
184 214 9.307121 CCGGTGAACATTTTAAATAATGCATAA 57.693 29.630 0.00 0.00 38.74 1.90
586 656 9.981114 AAAAGAAACAGAAAAGAGAAGAAAACA 57.019 25.926 0.00 0.00 0.00 2.83
587 657 9.631452 AAAGAAACAGAAAAGAGAAGAAAACAG 57.369 29.630 0.00 0.00 0.00 3.16
588 658 7.254137 AGAAACAGAAAAGAGAAGAAAACAGC 58.746 34.615 0.00 0.00 0.00 4.40
589 659 6.515272 AACAGAAAAGAGAAGAAAACAGCA 57.485 33.333 0.00 0.00 0.00 4.41
590 660 6.515272 ACAGAAAAGAGAAGAAAACAGCAA 57.485 33.333 0.00 0.00 0.00 3.91
591 661 6.924111 ACAGAAAAGAGAAGAAAACAGCAAA 58.076 32.000 0.00 0.00 0.00 3.68
592 662 7.031975 ACAGAAAAGAGAAGAAAACAGCAAAG 58.968 34.615 0.00 0.00 0.00 2.77
593 663 6.020041 CAGAAAAGAGAAGAAAACAGCAAAGC 60.020 38.462 0.00 0.00 0.00 3.51
594 664 4.989279 AAGAGAAGAAAACAGCAAAGCA 57.011 36.364 0.00 0.00 0.00 3.91
595 665 4.989279 AGAGAAGAAAACAGCAAAGCAA 57.011 36.364 0.00 0.00 0.00 3.91
596 666 4.676546 AGAGAAGAAAACAGCAAAGCAAC 58.323 39.130 0.00 0.00 0.00 4.17
612 682 1.919918 GCAACAGCGAAATAACCATGC 59.080 47.619 0.00 0.00 0.00 4.06
644 714 2.127383 CGAAGCCACGCCGTTTTC 60.127 61.111 0.00 0.00 0.00 2.29
645 715 2.604174 CGAAGCCACGCCGTTTTCT 61.604 57.895 0.00 0.00 0.00 2.52
646 716 1.082104 GAAGCCACGCCGTTTTCTG 60.082 57.895 0.00 0.00 0.00 3.02
647 717 1.503818 GAAGCCACGCCGTTTTCTGA 61.504 55.000 0.00 0.00 0.00 3.27
648 718 1.782028 AAGCCACGCCGTTTTCTGAC 61.782 55.000 0.00 0.00 0.00 3.51
649 719 2.549282 CCACGCCGTTTTCTGACG 59.451 61.111 0.00 0.00 42.43 4.35
656 726 1.850640 CGTTTTCTGACGGACACGG 59.149 57.895 7.14 0.00 46.48 4.94
967 1219 1.728672 CCTCTCTCTACGCCCGAAC 59.271 63.158 0.00 0.00 0.00 3.95
968 1220 1.726533 CCTCTCTCTACGCCCGAACC 61.727 65.000 0.00 0.00 0.00 3.62
1064 1318 4.929707 CTGTATTCCCCGCCGCCC 62.930 72.222 0.00 0.00 0.00 6.13
1274 1553 1.138661 CATCTCTCCTGCTTCTCCACC 59.861 57.143 0.00 0.00 0.00 4.61
1438 2098 1.227263 GGTGGTCGACATGATCCGG 60.227 63.158 18.91 0.00 0.00 5.14
1562 2242 6.327934 GTCAATTCATCATTTCCCTCACAAG 58.672 40.000 0.00 0.00 0.00 3.16
1621 2466 6.083098 TGCTGCAATGTACAACTTGTATTT 57.917 33.333 0.00 0.69 35.05 1.40
1662 3165 4.566907 GGACTAGATTTGGGCTTGTTGGTA 60.567 45.833 0.00 0.00 0.00 3.25
1719 3938 5.130477 TGGACAGTCCTTGATAACTTATCCC 59.870 44.000 20.82 0.00 37.46 3.85
1818 4041 3.764434 TCATCTAGTTCCAGTCAGACACC 59.236 47.826 2.66 0.00 0.00 4.16
1831 4054 4.583073 AGTCAGACACCCAACCAATTTAAC 59.417 41.667 2.66 0.00 0.00 2.01
1853 4076 2.028658 TCACTGTGAGCTCTGACCATTC 60.029 50.000 16.19 0.00 0.00 2.67
1910 4133 5.163713 GGATGTTGCTAGAGTGGTTGAATTC 60.164 44.000 0.00 0.00 0.00 2.17
1981 4204 5.321102 AGCCAGTAATGTGTTACCATTTGA 58.679 37.500 4.85 0.00 40.88 2.69
2062 4368 1.142748 AGTATGCTGCTCTGCCGAC 59.857 57.895 0.00 0.00 0.00 4.79
2132 4440 7.201705 GGAGTAAATTTGGTGGATTACTAGCAC 60.202 40.741 0.00 0.00 38.38 4.40
2460 4816 9.460019 TGGTCCTTTTGAAATTTGAAAAAGATT 57.540 25.926 24.30 0.00 41.36 2.40
2620 4976 4.104086 AGAGTTCAACTGGTGGATATGGA 58.896 43.478 0.00 0.00 0.00 3.41
2774 5130 2.104792 TGCCTCTGTTGCTAGACTGTTT 59.895 45.455 0.00 0.00 0.00 2.83
2798 5154 7.517614 TGGTTGCATTTGTATTCTCACTTTA 57.482 32.000 0.00 0.00 0.00 1.85
2816 5172 9.226606 CTCACTTTAAATAACAGTTGGTGGATA 57.773 33.333 0.00 0.00 0.00 2.59
2870 5228 8.472683 TTTATGCAATATTTAACCTGTGCAAC 57.527 30.769 0.00 0.00 44.39 4.17
2965 5343 7.334671 TGGCATAACAAAACATCGTGATACTTA 59.665 33.333 0.00 0.00 0.00 2.24
2966 5344 7.638683 GGCATAACAAAACATCGTGATACTTAC 59.361 37.037 0.00 0.00 0.00 2.34
2967 5345 8.388103 GCATAACAAAACATCGTGATACTTACT 58.612 33.333 0.00 0.00 0.00 2.24
3016 5395 1.668419 ACTTTCGTTGCTCACTTGCT 58.332 45.000 0.00 0.00 0.00 3.91
3020 5399 0.029300 TCGTTGCTCACTTGCTTTGC 59.971 50.000 0.00 0.00 0.00 3.68
3277 5657 9.046296 CGATAGTTCAGCCTTATAAATCTTTGT 57.954 33.333 0.00 0.00 0.00 2.83
3326 5706 5.563085 GCATTGTACCGTCCATAAAACAACA 60.563 40.000 0.00 0.00 30.40 3.33
3412 5874 2.689553 TCAAAGCTGGACGCATGATA 57.310 45.000 0.00 0.00 42.61 2.15
3479 5941 7.385267 TCAAGCATGCTTAAATATGTGGTTTT 58.615 30.769 31.48 1.78 34.50 2.43
3483 5945 6.818142 GCATGCTTAAATATGTGGTTTTCCTT 59.182 34.615 11.37 0.00 41.38 3.36
3490 5952 2.358322 TGTGGTTTTCCTTCCAGGTC 57.642 50.000 0.00 0.00 41.38 3.85
3530 5992 6.179906 TCCTGCTAAATTCCAGAAGATAGG 57.820 41.667 3.16 0.00 0.00 2.57
3576 6044 9.888878 AATGATTAAGATTGCATCAAATACTCG 57.111 29.630 0.00 0.00 30.79 4.18
3668 6139 7.386848 CCAAATTTTTGATCATCTGCTCAAACT 59.613 33.333 8.31 0.00 39.11 2.66
3710 6181 9.667107 TTATTGAGTTGACCAATTAAGTAGGAG 57.333 33.333 0.00 0.00 35.94 3.69
3771 6244 6.548251 TCATTCTTACATACCTACATCCGACA 59.452 38.462 0.00 0.00 0.00 4.35
3774 6247 7.356089 TCTTACATACCTACATCCGACAAAT 57.644 36.000 0.00 0.00 0.00 2.32
3805 6278 4.192317 AGTTGAGTGTGGTTTGTTCTCTC 58.808 43.478 0.00 0.00 0.00 3.20
3808 6281 4.442706 TGAGTGTGGTTTGTTCTCTCTTC 58.557 43.478 0.00 0.00 0.00 2.87
3812 6287 4.509600 GTGTGGTTTGTTCTCTCTTCTCTG 59.490 45.833 0.00 0.00 0.00 3.35
3834 6309 4.019681 TGTCGGTGGGTGATAATCTTTTCT 60.020 41.667 0.00 0.00 0.00 2.52
3835 6310 4.332819 GTCGGTGGGTGATAATCTTTTCTG 59.667 45.833 0.00 0.00 0.00 3.02
3859 6334 9.421806 CTGATAGCATAGAGTGAAAATTCCTAG 57.578 37.037 0.00 0.00 0.00 3.02
3868 6343 5.831997 AGTGAAAATTCCTAGTTGTGTTGC 58.168 37.500 0.00 0.00 0.00 4.17
3904 6379 7.059945 GCATATTCTTCGTGTTTTCAAGTTCAG 59.940 37.037 0.00 0.00 0.00 3.02
4067 6544 5.991933 AGACTGAAATCACTGAGAAGCTA 57.008 39.130 0.00 0.00 0.00 3.32
4090 6567 5.741011 ACGCCAAGAGATCAATAAGGTTTA 58.259 37.500 0.00 0.00 0.00 2.01
4231 6715 1.543429 GCAGAGCTTGTACCTGGTGTT 60.543 52.381 10.23 0.00 0.00 3.32
4440 7120 3.965347 GCTACTAAATGGTAGTCCCTCCA 59.035 47.826 5.93 0.00 40.70 3.86
4478 7158 6.649141 TGTCGCTGATTTAGTACAAAGTTGAT 59.351 34.615 0.00 0.00 0.00 2.57
4488 7168 5.091552 AGTACAAAGTTGATGGAGGGAGTA 58.908 41.667 0.00 0.00 0.00 2.59
4489 7169 4.559862 ACAAAGTTGATGGAGGGAGTAG 57.440 45.455 0.00 0.00 0.00 2.57
4490 7170 4.168101 ACAAAGTTGATGGAGGGAGTAGA 58.832 43.478 0.00 0.00 0.00 2.59
4508 7190 6.267014 GGAGTAGAATATGCCTTACAGTGGTA 59.733 42.308 0.00 0.00 0.00 3.25
4631 7313 4.282950 TGTAATACTCGCTACGAACAGG 57.717 45.455 0.00 0.00 34.74 4.00
4710 7399 0.182775 ACTGCAATACCGGATTCCCC 59.817 55.000 9.46 0.00 0.00 4.81
5178 7882 0.663153 GCGTCCCATGCCAAGATTAC 59.337 55.000 0.00 0.00 0.00 1.89
5179 7883 0.937304 CGTCCCATGCCAAGATTACG 59.063 55.000 0.00 0.00 0.00 3.18
5290 7999 1.745653 GGCTGTCATCCCACTTTTAGC 59.254 52.381 0.00 0.00 0.00 3.09
5367 8080 3.646162 TCACAGGGTTTGTCATCACTAGT 59.354 43.478 0.00 0.00 38.16 2.57
5450 8163 1.206610 CAGCTGATGTCACCTGCTAGT 59.793 52.381 8.42 0.00 37.11 2.57
5569 8282 7.732140 TGTATCCTGAACTCATGATCCTCTATT 59.268 37.037 0.00 0.00 34.04 1.73
5688 8405 0.529378 CTGCACAAGAATTCCCAGCC 59.471 55.000 0.65 0.00 0.00 4.85
5745 8462 1.026718 ACTTGGTAAGCAGGCGCATC 61.027 55.000 10.83 0.00 42.27 3.91
5746 8463 1.002746 TTGGTAAGCAGGCGCATCA 60.003 52.632 10.83 0.00 42.27 3.07
5751 8468 0.250234 TAAGCAGGCGCATCAACTCT 59.750 50.000 10.83 0.00 42.27 3.24
5752 8469 0.607489 AAGCAGGCGCATCAACTCTT 60.607 50.000 10.83 0.00 42.27 2.85
5817 8906 1.780309 TGGACTTCCATTGGTTCCAGT 59.220 47.619 15.30 8.57 42.01 4.00
5829 8918 2.027561 TGGTTCCAGTAGGACAAATCGG 60.028 50.000 0.00 0.00 45.73 4.18
5895 9001 0.604073 TCGTGTATCTTCGTTGCCCA 59.396 50.000 0.00 0.00 0.00 5.36
5971 9085 2.496470 AGTATCAGGTCGTGGTTCCTTC 59.504 50.000 0.00 0.00 30.91 3.46
5974 9088 0.249741 CAGGTCGTGGTTCCTTCGTT 60.250 55.000 0.00 0.00 30.91 3.85
5993 9107 5.860611 TCGTTGGAGAACTGGAATTTCTTA 58.139 37.500 0.00 0.00 33.30 2.10
6008 9122 8.673711 TGGAATTTCTTAGATTATGTTTCGTGG 58.326 33.333 0.00 0.00 0.00 4.94
6013 9127 8.712285 TTCTTAGATTATGTTTCGTGGTAAGG 57.288 34.615 0.00 0.00 0.00 2.69
6014 9128 7.844009 TCTTAGATTATGTTTCGTGGTAAGGT 58.156 34.615 0.00 0.00 0.00 3.50
6019 9133 1.269726 TGTTTCGTGGTAAGGTCGACC 60.270 52.381 27.67 27.67 37.49 4.79
6044 9167 1.281353 GTCGAATTGCACGTTGCCA 59.719 52.632 7.38 0.00 44.23 4.92
6082 9205 7.862873 GCTTGATAACTTATTTGGGTTATGCTC 59.137 37.037 0.00 0.00 38.32 4.26
6170 9297 1.202099 TCAGGTAACGGCCCAATCCA 61.202 55.000 0.00 0.00 46.39 3.41
6194 9327 4.853924 TCACCAAGAAAAAGGCTTCATC 57.146 40.909 0.00 1.91 0.00 2.92
6208 9341 2.867429 CTTCATCCATCGTTTGGCAAC 58.133 47.619 0.00 0.00 46.01 4.17
6249 9514 4.269523 TGCTGGGTGGTCCTGTGC 62.270 66.667 0.00 0.00 36.89 4.57
6302 9567 2.482142 GGAGTGAAGCTTATCCCTGTCG 60.482 54.545 0.00 0.00 0.00 4.35
6325 9590 3.357079 AGTTTTGCTGCTCGCCCG 61.357 61.111 0.00 0.00 38.05 6.13
6439 9719 5.354234 CCAACACGGAGCTAAATATGTTTCT 59.646 40.000 0.00 0.00 36.56 2.52
6440 9720 6.537301 CCAACACGGAGCTAAATATGTTTCTA 59.463 38.462 0.00 0.00 36.56 2.10
6441 9721 7.254455 CCAACACGGAGCTAAATATGTTTCTAG 60.254 40.741 0.00 0.00 36.56 2.43
6442 9722 7.108841 ACACGGAGCTAAATATGTTTCTAGA 57.891 36.000 0.00 0.00 0.00 2.43
6443 9723 6.979238 ACACGGAGCTAAATATGTTTCTAGAC 59.021 38.462 0.00 0.00 0.00 2.59
6444 9724 7.147880 ACACGGAGCTAAATATGTTTCTAGACT 60.148 37.037 0.00 0.00 0.00 3.24
6445 9725 7.380065 CACGGAGCTAAATATGTTTCTAGACTC 59.620 40.741 0.00 0.00 0.00 3.36
6446 9726 6.864165 CGGAGCTAAATATGTTTCTAGACTCC 59.136 42.308 0.00 12.77 31.51 3.85
6448 9728 9.080097 GGAGCTAAATATGTTTCTAGACTCCTA 57.920 37.037 14.17 0.00 31.77 2.94
6450 9730 9.649316 AGCTAAATATGTTTCTAGACTCCTAGT 57.351 33.333 0.00 0.00 42.33 2.57
6530 9833 0.032678 ACGACGATCCTGATCCATGC 59.967 55.000 0.00 0.00 34.40 4.06
6566 9875 2.758089 GGAGCCATGCAAGCGACAG 61.758 63.158 6.45 0.00 34.64 3.51
6620 9933 2.873288 GCTTTCTTGCTCCCGCTG 59.127 61.111 0.00 0.00 36.97 5.18
6711 10028 6.145371 CGGTTCCTGTCCACAAAATAAAATTG 59.855 38.462 0.00 0.00 0.00 2.32
6758 10075 0.392998 ATGACATGGTTCCCGTCTGC 60.393 55.000 0.00 0.00 0.00 4.26
6768 10085 2.126307 CCGTCTGCTGTCACGAGG 60.126 66.667 6.43 0.00 38.32 4.63
6769 10086 2.626780 CCGTCTGCTGTCACGAGGA 61.627 63.158 6.43 0.00 38.32 3.71
6790 10107 2.303549 CTGATCCGTCAGGCCAGGAC 62.304 65.000 15.53 15.53 46.56 3.85
6822 10139 2.125106 GTGCCGGGAAAGCGAGAT 60.125 61.111 2.18 0.00 0.00 2.75
6845 10162 1.038681 TCGAAATCACCGGGGATCGA 61.039 55.000 24.78 24.78 42.43 3.59
6846 10163 0.874607 CGAAATCACCGGGGATCGAC 60.875 60.000 22.41 14.22 42.43 4.20
6894 10217 2.404789 CATCACCAATCCGCACGC 59.595 61.111 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.892063 GTCTTTGACGAGAGGGAGCT 59.108 55.000 0.00 0.00 0.00 4.09
4 5 4.993029 AATAGTCTTTGACGAGAGGGAG 57.007 45.455 0.00 0.00 37.67 4.30
7 8 8.622157 TGATTAGTAATAGTCTTTGACGAGAGG 58.378 37.037 0.00 0.00 37.67 3.69
8 9 9.440784 GTGATTAGTAATAGTCTTTGACGAGAG 57.559 37.037 0.00 0.00 37.67 3.20
9 10 9.175312 AGTGATTAGTAATAGTCTTTGACGAGA 57.825 33.333 0.00 0.00 37.67 4.04
10 11 9.440784 GAGTGATTAGTAATAGTCTTTGACGAG 57.559 37.037 0.00 0.00 37.67 4.18
12 13 7.909121 ACGAGTGATTAGTAATAGTCTTTGACG 59.091 37.037 0.00 0.00 37.67 4.35
13 14 9.224058 GACGAGTGATTAGTAATAGTCTTTGAC 57.776 37.037 0.00 0.00 0.00 3.18
15 16 8.407064 AGGACGAGTGATTAGTAATAGTCTTTG 58.593 37.037 0.00 0.00 0.00 2.77
16 17 8.522542 AGGACGAGTGATTAGTAATAGTCTTT 57.477 34.615 0.00 0.00 0.00 2.52
17 18 9.624373 TTAGGACGAGTGATTAGTAATAGTCTT 57.376 33.333 0.00 1.41 0.00 3.01
18 19 9.796180 ATTAGGACGAGTGATTAGTAATAGTCT 57.204 33.333 0.00 0.00 0.00 3.24
19 20 9.828852 CATTAGGACGAGTGATTAGTAATAGTC 57.171 37.037 0.00 1.89 0.00 2.59
20 21 9.570468 TCATTAGGACGAGTGATTAGTAATAGT 57.430 33.333 0.00 0.00 0.00 2.12
24 25 9.745880 GAAATCATTAGGACGAGTGATTAGTAA 57.254 33.333 4.22 0.00 39.61 2.24
64 65 4.309099 TGATACTTAAAAAGTCACGCCGT 58.691 39.130 0.00 0.00 41.77 5.68
141 147 8.630917 TGTTCACCGGATTTTAAGAAAATGTTA 58.369 29.630 9.46 0.00 40.97 2.41
586 656 3.308530 GTTATTTCGCTGTTGCTTTGCT 58.691 40.909 0.00 0.00 36.97 3.91
587 657 2.408368 GGTTATTTCGCTGTTGCTTTGC 59.592 45.455 0.00 0.00 36.97 3.68
588 658 3.637432 TGGTTATTTCGCTGTTGCTTTG 58.363 40.909 0.00 0.00 36.97 2.77
589 659 4.236935 CATGGTTATTTCGCTGTTGCTTT 58.763 39.130 0.00 0.00 36.97 3.51
590 660 3.836949 CATGGTTATTTCGCTGTTGCTT 58.163 40.909 0.00 0.00 36.97 3.91
591 661 2.415893 GCATGGTTATTTCGCTGTTGCT 60.416 45.455 0.00 0.00 36.97 3.91
592 662 1.919918 GCATGGTTATTTCGCTGTTGC 59.080 47.619 0.00 0.00 0.00 4.17
593 663 2.176369 CGCATGGTTATTTCGCTGTTG 58.824 47.619 0.00 0.00 0.00 3.33
594 664 1.467374 GCGCATGGTTATTTCGCTGTT 60.467 47.619 0.30 0.00 42.19 3.16
595 665 0.098728 GCGCATGGTTATTTCGCTGT 59.901 50.000 0.30 0.00 42.19 4.40
596 666 0.592247 GGCGCATGGTTATTTCGCTG 60.592 55.000 10.83 0.00 44.51 5.18
638 708 1.850640 CCGTGTCCGTCAGAAAACG 59.149 57.895 0.00 0.00 42.24 3.60
639 709 1.568025 GCCGTGTCCGTCAGAAAAC 59.432 57.895 0.00 0.00 0.00 2.43
640 710 1.595929 GGCCGTGTCCGTCAGAAAA 60.596 57.895 0.00 0.00 0.00 2.29
641 711 2.029964 GGCCGTGTCCGTCAGAAA 59.970 61.111 0.00 0.00 0.00 2.52
642 712 3.998672 GGGCCGTGTCCGTCAGAA 61.999 66.667 0.00 0.00 0.00 3.02
644 714 4.308458 TTGGGCCGTGTCCGTCAG 62.308 66.667 0.00 0.00 0.00 3.51
645 715 4.308458 CTTGGGCCGTGTCCGTCA 62.308 66.667 0.00 0.00 0.00 4.35
650 720 4.681978 AGACGCTTGGGCCGTGTC 62.682 66.667 14.89 14.89 41.06 3.67
651 721 4.681978 GAGACGCTTGGGCCGTGT 62.682 66.667 0.00 0.00 34.44 4.49
930 1182 3.151022 GCCGAGACAGGGGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
950 1202 1.726533 GGGTTCGGGCGTAGAGAGAG 61.727 65.000 0.00 0.00 0.00 3.20
951 1203 1.751927 GGGTTCGGGCGTAGAGAGA 60.752 63.158 0.00 0.00 0.00 3.10
952 1204 2.806237 GGGTTCGGGCGTAGAGAG 59.194 66.667 0.00 0.00 0.00 3.20
953 1205 3.136123 CGGGTTCGGGCGTAGAGA 61.136 66.667 0.00 0.00 0.00 3.10
1064 1318 1.228510 GGGGAGGAGAATGCAAGGG 59.771 63.158 0.00 0.00 0.00 3.95
1285 1569 2.551032 GGTAACAACTGAAAACCTCCGG 59.449 50.000 0.00 0.00 0.00 5.14
1291 1575 4.841443 ATTCGGGGTAACAACTGAAAAC 57.159 40.909 0.00 0.00 39.74 2.43
1317 1634 6.542735 AGAGAACCAAACTAAGTCCTGAAAAC 59.457 38.462 0.00 0.00 0.00 2.43
1320 1637 5.888982 AGAGAACCAAACTAAGTCCTGAA 57.111 39.130 0.00 0.00 0.00 3.02
1438 2098 1.377536 GTCCAGCCATCTTCTTCTGC 58.622 55.000 0.00 0.00 0.00 4.26
1562 2242 7.760340 ACAGTAGCACTAAAAGTATCTAGCAAC 59.240 37.037 0.00 0.00 0.00 4.17
1621 2466 3.585428 AATTCCACGCCACCCCCA 61.585 61.111 0.00 0.00 0.00 4.96
1662 3165 3.844640 ACAACCTAGCCTCCAAATTTGT 58.155 40.909 16.73 0.66 0.00 2.83
1791 4010 4.019858 CTGACTGGAACTAGATGAGACCA 58.980 47.826 0.00 0.00 35.26 4.02
1818 4041 5.762045 CTCACAGTGAGTTAAATTGGTTGG 58.238 41.667 21.00 0.00 39.58 3.77
1831 4054 0.964700 TGGTCAGAGCTCACAGTGAG 59.035 55.000 24.34 24.34 46.90 3.51
1853 4076 5.920273 ACAAAATAAAAGGTGTGAATGCTCG 59.080 36.000 0.00 0.00 0.00 5.03
1981 4204 9.533253 CTCAAAACAAATTCTTAATGACCAAGT 57.467 29.630 0.00 0.00 0.00 3.16
2062 4368 4.299155 TCTAAAGAACAGCACACTTCTCG 58.701 43.478 0.00 0.00 0.00 4.04
2132 4440 4.337555 ACAGCCTGATAAATTGCTAGCAAG 59.662 41.667 31.88 18.00 39.47 4.01
2259 4606 5.007528 GCATTGCAGAATAGGAAGAGAAGAC 59.992 44.000 3.15 0.00 0.00 3.01
2592 4948 3.070159 TCCACCAGTTGAACTCTCAGAAG 59.930 47.826 0.00 0.00 31.69 2.85
2593 4949 3.038280 TCCACCAGTTGAACTCTCAGAA 58.962 45.455 0.00 0.00 31.69 3.02
2639 4995 6.378280 CCTTTTACAGTCTTCAGGCCAATTAT 59.622 38.462 5.01 0.00 0.00 1.28
2774 5130 6.403866 AAAGTGAGAATACAAATGCAACCA 57.596 33.333 0.00 0.00 0.00 3.67
2798 5154 8.548877 AGATACACTATCCACCAACTGTTATTT 58.451 33.333 0.00 0.00 35.79 1.40
2808 5164 7.125053 TGAACACATAAGATACACTATCCACCA 59.875 37.037 0.00 0.00 35.79 4.17
2870 5228 3.157087 AGTTTCCACACTTGCCATAAGG 58.843 45.455 0.00 0.00 38.23 2.69
3016 5395 5.734720 CAGAATACAAGTAGGAGAGGCAAA 58.265 41.667 0.00 0.00 0.00 3.68
3020 5399 5.069648 TCATGCAGAATACAAGTAGGAGAGG 59.930 44.000 0.00 0.00 0.00 3.69
3169 5548 4.713814 ACATACTCCTCTGCTTCAAGATCA 59.286 41.667 0.00 0.00 0.00 2.92
3277 5657 2.700722 TGGCTGAACAAGTGTACACA 57.299 45.000 27.06 5.13 0.00 3.72
3278 5658 4.275936 AGAATTGGCTGAACAAGTGTACAC 59.724 41.667 18.56 18.56 33.23 2.90
3399 5861 4.621068 AACAAATGTATCATGCGTCCAG 57.379 40.909 0.00 0.00 0.00 3.86
3483 5945 1.414919 AGCAACTTACAACGACCTGGA 59.585 47.619 0.00 0.00 0.00 3.86
3490 5952 1.873591 AGGAGCAAGCAACTTACAACG 59.126 47.619 0.00 0.00 0.00 4.10
3576 6044 3.701040 AGGCACAATTGATAATGTGGACC 59.299 43.478 13.59 0.00 45.46 4.46
3691 6162 5.476614 ACGACTCCTACTTAATTGGTCAAC 58.523 41.667 0.00 0.00 0.00 3.18
3710 6181 3.195661 AGACAGGAACAAGAACAACGAC 58.804 45.455 0.00 0.00 0.00 4.34
3771 6244 7.346751 ACCACACTCAACTTAATTGTCATTT 57.653 32.000 0.00 0.00 39.54 2.32
3774 6247 6.151985 ACAAACCACACTCAACTTAATTGTCA 59.848 34.615 0.00 0.00 39.54 3.58
3805 6278 0.898320 ATCACCCACCGACAGAGAAG 59.102 55.000 0.00 0.00 0.00 2.85
3808 6281 2.695666 AGATTATCACCCACCGACAGAG 59.304 50.000 0.00 0.00 0.00 3.35
3812 6287 4.332819 CAGAAAAGATTATCACCCACCGAC 59.667 45.833 0.00 0.00 0.00 4.79
3834 6309 8.928448 ACTAGGAATTTTCACTCTATGCTATCA 58.072 33.333 0.00 0.00 0.00 2.15
3835 6310 9.771534 AACTAGGAATTTTCACTCTATGCTATC 57.228 33.333 0.00 0.00 0.00 2.08
3868 6343 7.239166 ACACGAAGAATATGCTTCTATGTTG 57.761 36.000 19.34 11.29 41.60 3.33
4067 6544 3.914426 ACCTTATTGATCTCTTGGCGT 57.086 42.857 0.00 0.00 0.00 5.68
4147 6631 1.644509 AAGAAAAGGCACCCATTCCC 58.355 50.000 0.00 0.00 0.00 3.97
4280 6786 8.593945 ATCCAAAACAAGCCTATGAAGATAAA 57.406 30.769 0.00 0.00 0.00 1.40
4440 7120 3.950397 TCAGCGACACTTATTTTGGGAT 58.050 40.909 0.00 0.00 0.00 3.85
4478 7158 3.637821 AGGCATATTCTACTCCCTCCA 57.362 47.619 0.00 0.00 0.00 3.86
4488 7168 6.747414 TCATACCACTGTAAGGCATATTCT 57.253 37.500 0.00 0.00 39.30 2.40
4489 7169 7.986085 AATCATACCACTGTAAGGCATATTC 57.014 36.000 0.00 0.00 39.30 1.75
4490 7170 7.998383 TGAAATCATACCACTGTAAGGCATATT 59.002 33.333 0.00 0.00 39.30 1.28
4631 7313 6.726490 TCTTACCTCACAGTACATATTCCC 57.274 41.667 0.00 0.00 0.00 3.97
5209 7916 6.329496 TCAAGAAAATCCTTTCAACACACAC 58.671 36.000 0.86 0.00 42.99 3.82
5290 7999 9.935682 ATGTTATAAAATTCACATAGCAGAACG 57.064 29.630 0.00 0.00 0.00 3.95
5311 8024 7.574404 GCGTACACTAGACATATAGGCATGTTA 60.574 40.741 0.00 0.00 39.25 2.41
5312 8025 6.678878 CGTACACTAGACATATAGGCATGTT 58.321 40.000 0.00 0.00 39.25 2.71
5367 8080 7.463431 ACCATTACTACCAACAATAAACTGGA 58.537 34.615 0.00 0.00 34.16 3.86
5436 8149 3.617531 GCAACTACACTAGCAGGTGACAT 60.618 47.826 14.45 0.00 40.13 3.06
5450 8163 2.620367 CCCATTAGCCTTGGCAACTACA 60.620 50.000 14.54 0.00 32.60 2.74
5514 8227 1.133009 AGACCCGGCTAGGAAGATGAT 60.133 52.381 0.00 0.00 45.00 2.45
5569 8282 3.629855 CAGACTTCTTCGAGATCAGCCTA 59.370 47.826 0.00 0.00 0.00 3.93
5688 8405 3.197790 CAATCACCTGAGCCGGCG 61.198 66.667 23.20 9.47 0.00 6.46
5745 8462 1.605710 CCCAACTGTGCTCAAGAGTTG 59.394 52.381 10.69 10.69 39.40 3.16
5746 8463 1.477558 CCCCAACTGTGCTCAAGAGTT 60.478 52.381 0.00 0.00 0.00 3.01
5751 8468 0.469705 AATGCCCCAACTGTGCTCAA 60.470 50.000 0.00 0.00 0.00 3.02
5752 8469 1.153524 AATGCCCCAACTGTGCTCA 59.846 52.632 0.00 0.00 0.00 4.26
5817 8906 3.170717 AGACCAGAACCGATTTGTCCTA 58.829 45.455 0.00 0.00 0.00 2.94
5829 8918 2.815478 CGAGAAGCCATAGACCAGAAC 58.185 52.381 0.00 0.00 0.00 3.01
5895 9001 4.624843 CGGGATCTAGCCATCAATTAGCAT 60.625 45.833 0.00 0.00 0.00 3.79
5950 9060 2.233305 AGGAACCACGACCTGATACT 57.767 50.000 0.00 0.00 34.99 2.12
5971 9085 5.932303 TCTAAGAAATTCCAGTTCTCCAACG 59.068 40.000 0.00 0.00 37.61 4.10
5974 9088 9.618890 CATAATCTAAGAAATTCCAGTTCTCCA 57.381 33.333 0.00 0.00 34.19 3.86
5993 9107 5.105635 TCGACCTTACCACGAAACATAATCT 60.106 40.000 0.00 0.00 33.20 2.40
6008 9122 2.410939 GACAAGTTGGGTCGACCTTAC 58.589 52.381 32.52 27.29 41.11 2.34
6019 9133 1.002900 ACGTGCAATTCGACAAGTTGG 60.003 47.619 7.96 0.00 0.00 3.77
6071 9194 4.250464 CGACAAACTTAGAGCATAACCCA 58.750 43.478 0.00 0.00 0.00 4.51
6149 9272 1.409661 GGATTGGGCCGTTACCTGAAT 60.410 52.381 0.00 0.00 0.00 2.57
6170 9297 3.960102 TGAAGCCTTTTTCTTGGTGATGT 59.040 39.130 0.00 0.00 0.00 3.06
6208 9341 2.911723 CACGTTTGTTCTCGCTCTCTAG 59.088 50.000 0.00 0.00 0.00 2.43
6249 9514 5.702670 TGGAGAAGTTCACTGAAATGCTTAG 59.297 40.000 5.50 0.00 24.48 2.18
6325 9590 1.600916 GCATATTCCGGGTCTGGCC 60.601 63.158 0.00 0.00 0.00 5.36
6329 9598 3.148084 CGGGCATATTCCGGGTCT 58.852 61.111 0.00 0.00 43.45 3.85
6439 9719 1.767088 TCGGCAGCTACTAGGAGTCTA 59.233 52.381 3.31 0.00 0.00 2.59
6440 9720 0.547075 TCGGCAGCTACTAGGAGTCT 59.453 55.000 3.31 0.00 0.00 3.24
6441 9721 0.948678 CTCGGCAGCTACTAGGAGTC 59.051 60.000 3.31 0.00 0.00 3.36
6442 9722 0.256464 ACTCGGCAGCTACTAGGAGT 59.744 55.000 3.31 0.00 0.00 3.85
6443 9723 0.665835 CACTCGGCAGCTACTAGGAG 59.334 60.000 0.00 0.00 0.00 3.69
6444 9724 1.384989 GCACTCGGCAGCTACTAGGA 61.385 60.000 0.00 0.00 43.97 2.94
6445 9725 1.066587 GCACTCGGCAGCTACTAGG 59.933 63.158 0.00 0.00 43.97 3.02
6446 9726 4.719997 GCACTCGGCAGCTACTAG 57.280 61.111 0.00 0.00 43.97 2.57
6511 9814 0.032678 GCATGGATCAGGATCGTCGT 59.967 55.000 3.38 0.00 38.69 4.34
6566 9875 0.670854 GGACTGTTGGAGAGCGGTTC 60.671 60.000 0.00 0.00 0.00 3.62
6620 9933 1.019805 GTCCGGCTCTGTGGTTAAGC 61.020 60.000 0.00 0.00 35.27 3.09
6711 10028 2.488153 GAGTTGGATTAACACTGGGTGC 59.512 50.000 0.00 0.00 41.88 5.01
6758 10075 0.102120 GGATCAGCTCCTCGTGACAG 59.898 60.000 0.00 0.00 41.29 3.51
6790 10107 1.139163 GGCACATGTTTTCTTTGGCG 58.861 50.000 0.00 0.00 0.00 5.69
6822 10139 2.666207 CCCGGTGATTTCGACCCA 59.334 61.111 0.00 0.00 0.00 4.51
6845 10162 1.228154 GTTTTGGCTGTCGAGGGGT 60.228 57.895 0.00 0.00 0.00 4.95
6846 10163 0.821711 TTGTTTTGGCTGTCGAGGGG 60.822 55.000 0.00 0.00 0.00 4.79
6848 10165 1.021202 TGTTGTTTTGGCTGTCGAGG 58.979 50.000 0.00 0.00 0.00 4.63
6849 10166 2.097466 ACTTGTTGTTTTGGCTGTCGAG 59.903 45.455 0.00 0.00 0.00 4.04
6850 10167 2.088423 ACTTGTTGTTTTGGCTGTCGA 58.912 42.857 0.00 0.00 0.00 4.20
6851 10168 2.559998 ACTTGTTGTTTTGGCTGTCG 57.440 45.000 0.00 0.00 0.00 4.35
6894 10217 0.389817 TCGCACTCCCTGAAATCGTG 60.390 55.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.