Multiple sequence alignment - TraesCS4A01G270800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G270800 chr4A 100.000 2779 0 0 1 2779 581918610 581915832 0.000000e+00 5132.0
1 TraesCS4A01G270800 chr4B 90.773 1875 73 46 549 2381 31681821 31683637 0.000000e+00 2412.0
2 TraesCS4A01G270800 chr4B 87.660 235 28 1 314 548 31679579 31679812 3.530000e-69 272.0
3 TraesCS4A01G270800 chr4B 83.333 288 30 11 1 270 620271702 620271415 1.650000e-62 250.0
4 TraesCS4A01G270800 chr4B 83.099 284 29 12 1 265 567184427 567184144 9.950000e-60 241.0
5 TraesCS4A01G270800 chr4B 81.250 144 24 3 2624 2765 86087514 86087656 2.260000e-21 113.0
6 TraesCS4A01G270800 chr4D 89.364 1777 75 44 552 2273 19290508 19292225 0.000000e+00 2130.0
7 TraesCS4A01G270800 chr4D 95.506 267 12 0 2496 2762 19296181 19296447 7.110000e-116 427.0
8 TraesCS4A01G270800 chr7D 83.280 311 29 8 1 293 241893379 241893684 5.900000e-67 265.0
9 TraesCS4A01G270800 chr7D 83.566 286 27 13 3 269 610710229 610709945 1.650000e-62 250.0
10 TraesCS4A01G270800 chr7D 83.217 286 28 13 3 269 568379825 568379541 7.690000e-61 244.0
11 TraesCS4A01G270800 chr2D 83.566 286 27 13 3 269 638775045 638774761 1.650000e-62 250.0
12 TraesCS4A01G270800 chr1D 83.217 286 28 13 3 269 99803297 99803013 7.690000e-61 244.0
13 TraesCS4A01G270800 chr1D 83.217 286 28 13 3 269 473768200 473768484 7.690000e-61 244.0
14 TraesCS4A01G270800 chr1D 83.158 285 29 12 3 269 473630677 473630960 2.770000e-60 243.0
15 TraesCS4A01G270800 chr1D 82.746 284 29 12 1 265 340530534 340530816 4.630000e-58 235.0
16 TraesCS4A01G270800 chr5D 83.704 270 24 13 3 253 287782782 287783050 1.290000e-58 237.0
17 TraesCS4A01G270800 chr5D 89.855 69 6 1 2424 2492 210675792 210675859 1.370000e-13 87.9
18 TraesCS4A01G270800 chr5B 82.353 289 32 11 1 270 197093576 197093864 1.660000e-57 233.0
19 TraesCS4A01G270800 chr5B 82.292 288 33 9 1 270 615808002 615808289 1.660000e-57 233.0
20 TraesCS4A01G270800 chr5B 79.286 280 47 10 1 270 655197598 655197876 4.730000e-43 185.0
21 TraesCS4A01G270800 chr1A 83.128 243 20 14 50 273 553693017 553693257 4.690000e-48 202.0
22 TraesCS4A01G270800 chr6B 87.069 116 13 2 159 272 3873779 3873664 2.250000e-26 130.0
23 TraesCS4A01G270800 chr6D 87.719 114 9 4 159 270 430014867 430014757 8.080000e-26 128.0
24 TraesCS4A01G270800 chr1B 90.323 62 6 0 2425 2486 427773005 427773066 6.380000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G270800 chr4A 581915832 581918610 2778 True 5132.0 5132 100.0000 1 2779 1 chr4A.!!$R1 2778
1 TraesCS4A01G270800 chr4B 31679579 31683637 4058 False 1342.0 2412 89.2165 314 2381 2 chr4B.!!$F2 2067
2 TraesCS4A01G270800 chr4D 19290508 19296447 5939 False 1278.5 2130 92.4350 552 2762 2 chr4D.!!$F1 2210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.03716 GGCTACGGAGGTTTTTCCCA 59.963 55.0 0.0 0.0 36.75 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 4075 0.039978 CGCCATCGTCGATCTTAGCT 60.04 55.0 4.34 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.923899 GCTACAAAGAGCGGAGTACC 58.076 55.000 0.00 0.00 31.57 3.34
22 23 1.203994 GCTACAAAGAGCGGAGTACCA 59.796 52.381 0.00 0.00 35.59 3.25
23 24 2.353406 GCTACAAAGAGCGGAGTACCAA 60.353 50.000 0.00 0.00 35.59 3.67
24 25 3.679083 GCTACAAAGAGCGGAGTACCAAT 60.679 47.826 0.00 0.00 35.59 3.16
25 26 2.973945 ACAAAGAGCGGAGTACCAATC 58.026 47.619 0.00 0.00 35.59 2.67
26 27 1.927174 CAAAGAGCGGAGTACCAATCG 59.073 52.381 0.00 0.00 35.59 3.34
27 28 1.183549 AAGAGCGGAGTACCAATCGT 58.816 50.000 0.00 0.00 35.59 3.73
28 29 1.183549 AGAGCGGAGTACCAATCGTT 58.816 50.000 0.00 0.00 35.59 3.85
29 30 1.135083 AGAGCGGAGTACCAATCGTTG 60.135 52.381 0.00 0.00 35.59 4.10
30 31 0.606604 AGCGGAGTACCAATCGTTGT 59.393 50.000 0.00 0.00 35.59 3.32
31 32 1.001633 AGCGGAGTACCAATCGTTGTT 59.998 47.619 0.00 0.00 35.59 2.83
32 33 1.392510 GCGGAGTACCAATCGTTGTTC 59.607 52.381 0.00 0.00 35.59 3.18
33 34 2.679450 CGGAGTACCAATCGTTGTTCA 58.321 47.619 0.00 0.00 35.59 3.18
34 35 3.061322 CGGAGTACCAATCGTTGTTCAA 58.939 45.455 0.00 0.00 35.59 2.69
35 36 3.122948 CGGAGTACCAATCGTTGTTCAAG 59.877 47.826 0.00 0.00 35.59 3.02
36 37 3.435671 GGAGTACCAATCGTTGTTCAAGG 59.564 47.826 0.00 0.00 35.97 3.61
37 38 2.812011 AGTACCAATCGTTGTTCAAGGC 59.188 45.455 0.00 0.00 0.00 4.35
38 39 1.686355 ACCAATCGTTGTTCAAGGCA 58.314 45.000 1.09 0.00 0.00 4.75
39 40 1.608590 ACCAATCGTTGTTCAAGGCAG 59.391 47.619 1.09 0.00 0.00 4.85
40 41 1.608590 CCAATCGTTGTTCAAGGCAGT 59.391 47.619 1.09 0.00 0.00 4.40
41 42 2.605338 CCAATCGTTGTTCAAGGCAGTG 60.605 50.000 1.09 0.00 0.00 3.66
42 43 1.967319 ATCGTTGTTCAAGGCAGTGT 58.033 45.000 0.00 0.00 0.00 3.55
43 44 1.013596 TCGTTGTTCAAGGCAGTGTG 58.986 50.000 0.00 0.00 0.00 3.82
44 45 0.732571 CGTTGTTCAAGGCAGTGTGT 59.267 50.000 0.00 0.00 0.00 3.72
45 46 1.937223 CGTTGTTCAAGGCAGTGTGTA 59.063 47.619 0.00 0.00 0.00 2.90
46 47 2.286184 CGTTGTTCAAGGCAGTGTGTAC 60.286 50.000 0.00 0.00 0.00 2.90
47 48 1.577468 TGTTCAAGGCAGTGTGTACG 58.423 50.000 0.00 0.00 0.00 3.67
48 49 0.234884 GTTCAAGGCAGTGTGTACGC 59.765 55.000 0.00 0.00 0.00 4.42
49 50 1.218875 TTCAAGGCAGTGTGTACGCG 61.219 55.000 3.53 3.53 0.00 6.01
50 51 2.357034 AAGGCAGTGTGTACGCGG 60.357 61.111 12.47 0.00 0.00 6.46
51 52 3.159858 AAGGCAGTGTGTACGCGGT 62.160 57.895 12.47 0.00 0.00 5.68
52 53 2.653953 AAGGCAGTGTGTACGCGGTT 62.654 55.000 12.47 0.00 0.00 4.44
53 54 2.549282 GCAGTGTGTACGCGGTTG 59.451 61.111 12.47 1.47 0.00 3.77
54 55 1.952133 GCAGTGTGTACGCGGTTGA 60.952 57.895 12.47 0.00 0.00 3.18
55 56 1.492319 GCAGTGTGTACGCGGTTGAA 61.492 55.000 12.47 0.00 0.00 2.69
56 57 0.506932 CAGTGTGTACGCGGTTGAAG 59.493 55.000 12.47 0.00 0.00 3.02
57 58 1.203313 GTGTGTACGCGGTTGAAGC 59.797 57.895 12.47 0.00 0.00 3.86
58 59 1.227292 TGTGTACGCGGTTGAAGCA 60.227 52.632 12.47 0.00 34.19 3.91
59 60 0.601576 TGTGTACGCGGTTGAAGCAT 60.602 50.000 12.47 0.00 34.19 3.79
60 61 0.179225 GTGTACGCGGTTGAAGCATG 60.179 55.000 12.47 0.00 34.19 4.06
61 62 1.226018 GTACGCGGTTGAAGCATGC 60.226 57.895 10.51 10.51 34.19 4.06
63 64 4.817063 CGCGGTTGAAGCATGCGG 62.817 66.667 13.01 0.00 44.65 5.69
73 74 4.530857 GCATGCGGCTACGGAGGT 62.531 66.667 0.00 0.00 45.70 3.85
74 75 2.186903 CATGCGGCTACGGAGGTT 59.813 61.111 0.00 0.00 45.70 3.50
75 76 1.449601 CATGCGGCTACGGAGGTTT 60.450 57.895 0.00 0.00 45.70 3.27
76 77 1.024579 CATGCGGCTACGGAGGTTTT 61.025 55.000 0.00 0.00 45.70 2.43
77 78 0.322187 ATGCGGCTACGGAGGTTTTT 60.322 50.000 0.00 0.00 45.70 1.94
78 79 0.952010 TGCGGCTACGGAGGTTTTTC 60.952 55.000 0.00 0.00 41.36 2.29
79 80 1.642037 GCGGCTACGGAGGTTTTTCC 61.642 60.000 0.00 0.00 41.36 3.13
80 81 1.022982 CGGCTACGGAGGTTTTTCCC 61.023 60.000 0.00 0.00 34.75 3.97
81 82 0.037160 GGCTACGGAGGTTTTTCCCA 59.963 55.000 0.00 0.00 36.75 4.37
82 83 1.546099 GGCTACGGAGGTTTTTCCCAA 60.546 52.381 0.00 0.00 36.75 4.12
83 84 1.538512 GCTACGGAGGTTTTTCCCAAC 59.461 52.381 0.00 0.00 36.75 3.77
84 85 2.853705 CTACGGAGGTTTTTCCCAACA 58.146 47.619 0.00 0.00 36.75 3.33
85 86 2.375014 ACGGAGGTTTTTCCCAACAT 57.625 45.000 0.00 0.00 36.75 2.71
86 87 1.960689 ACGGAGGTTTTTCCCAACATG 59.039 47.619 0.00 0.00 36.75 3.21
87 88 1.272212 CGGAGGTTTTTCCCAACATGG 59.728 52.381 0.00 0.00 37.25 3.66
96 97 2.601067 CCAACATGGGTGGCAGCA 60.601 61.111 19.48 5.16 32.67 4.41
97 98 1.985662 CCAACATGGGTGGCAGCAT 60.986 57.895 19.48 7.36 32.67 3.79
98 99 0.683828 CCAACATGGGTGGCAGCATA 60.684 55.000 19.48 7.19 32.67 3.14
99 100 1.184431 CAACATGGGTGGCAGCATAA 58.816 50.000 19.48 3.65 0.00 1.90
100 101 1.135024 CAACATGGGTGGCAGCATAAC 60.135 52.381 19.48 1.11 0.00 1.89
101 102 0.684153 ACATGGGTGGCAGCATAACC 60.684 55.000 19.48 0.00 0.00 2.85
103 104 2.442087 GGGTGGCAGCATAACCCC 60.442 66.667 19.48 5.08 46.77 4.95
104 105 2.442087 GGTGGCAGCATAACCCCC 60.442 66.667 12.58 0.00 0.00 5.40
105 106 2.828549 GTGGCAGCATAACCCCCG 60.829 66.667 0.00 0.00 0.00 5.73
106 107 4.122149 TGGCAGCATAACCCCCGG 62.122 66.667 0.00 0.00 0.00 5.73
107 108 3.804329 GGCAGCATAACCCCCGGA 61.804 66.667 0.73 0.00 0.00 5.14
108 109 2.515901 GCAGCATAACCCCCGGAT 59.484 61.111 0.73 0.00 0.00 4.18
109 110 1.152756 GCAGCATAACCCCCGGATT 60.153 57.895 0.73 0.00 0.00 3.01
110 111 1.455383 GCAGCATAACCCCCGGATTG 61.455 60.000 0.73 0.00 0.00 2.67
111 112 0.182537 CAGCATAACCCCCGGATTGA 59.817 55.000 0.73 0.00 0.00 2.57
112 113 0.182775 AGCATAACCCCCGGATTGAC 59.817 55.000 0.73 0.00 0.00 3.18
113 114 0.822121 GCATAACCCCCGGATTGACC 60.822 60.000 0.73 0.00 0.00 4.02
114 115 0.179001 CATAACCCCCGGATTGACCC 60.179 60.000 0.73 0.00 34.64 4.46
115 116 0.625091 ATAACCCCCGGATTGACCCA 60.625 55.000 0.73 0.00 34.64 4.51
116 117 1.564483 TAACCCCCGGATTGACCCAC 61.564 60.000 0.73 0.00 34.64 4.61
117 118 4.123545 CCCCCGGATTGACCCACC 62.124 72.222 0.73 0.00 34.64 4.61
118 119 3.334891 CCCCGGATTGACCCACCA 61.335 66.667 0.73 0.00 34.64 4.17
119 120 2.689691 CCCCGGATTGACCCACCAT 61.690 63.158 0.73 0.00 34.64 3.55
120 121 1.152963 CCCGGATTGACCCACCATC 60.153 63.158 0.73 0.00 34.64 3.51
121 122 1.607071 CCGGATTGACCCACCATCA 59.393 57.895 0.00 0.00 34.64 3.07
122 123 0.748005 CCGGATTGACCCACCATCAC 60.748 60.000 0.00 0.00 34.64 3.06
123 124 0.253044 CGGATTGACCCACCATCACT 59.747 55.000 0.00 0.00 34.64 3.41
124 125 1.340017 CGGATTGACCCACCATCACTT 60.340 52.381 0.00 0.00 34.64 3.16
125 126 2.807676 GGATTGACCCACCATCACTTT 58.192 47.619 0.00 0.00 0.00 2.66
126 127 2.755103 GGATTGACCCACCATCACTTTC 59.245 50.000 0.00 0.00 0.00 2.62
127 128 3.420893 GATTGACCCACCATCACTTTCA 58.579 45.455 0.00 0.00 0.00 2.69
128 129 3.304911 TTGACCCACCATCACTTTCAA 57.695 42.857 0.00 0.00 0.00 2.69
129 130 2.582052 TGACCCACCATCACTTTCAAC 58.418 47.619 0.00 0.00 0.00 3.18
130 131 2.092158 TGACCCACCATCACTTTCAACA 60.092 45.455 0.00 0.00 0.00 3.33
131 132 3.157087 GACCCACCATCACTTTCAACAT 58.843 45.455 0.00 0.00 0.00 2.71
132 133 4.202514 TGACCCACCATCACTTTCAACATA 60.203 41.667 0.00 0.00 0.00 2.29
133 134 4.335416 ACCCACCATCACTTTCAACATAG 58.665 43.478 0.00 0.00 0.00 2.23
134 135 3.696051 CCCACCATCACTTTCAACATAGG 59.304 47.826 0.00 0.00 0.00 2.57
135 136 3.129287 CCACCATCACTTTCAACATAGGC 59.871 47.826 0.00 0.00 0.00 3.93
136 137 3.758023 CACCATCACTTTCAACATAGGCA 59.242 43.478 0.00 0.00 0.00 4.75
137 138 4.400251 CACCATCACTTTCAACATAGGCAT 59.600 41.667 0.00 0.00 0.00 4.40
138 139 5.589855 CACCATCACTTTCAACATAGGCATA 59.410 40.000 0.00 0.00 0.00 3.14
139 140 5.824624 ACCATCACTTTCAACATAGGCATAG 59.175 40.000 0.00 0.00 0.00 2.23
140 141 5.824624 CCATCACTTTCAACATAGGCATAGT 59.175 40.000 0.00 0.00 0.00 2.12
141 142 6.238566 CCATCACTTTCAACATAGGCATAGTG 60.239 42.308 0.00 0.00 34.55 2.74
142 143 5.804639 TCACTTTCAACATAGGCATAGTGT 58.195 37.500 0.00 0.00 34.78 3.55
143 144 5.874810 TCACTTTCAACATAGGCATAGTGTC 59.125 40.000 0.00 0.00 34.78 3.67
144 145 4.870426 ACTTTCAACATAGGCATAGTGTCG 59.130 41.667 0.00 0.00 0.00 4.35
145 146 3.452755 TCAACATAGGCATAGTGTCGG 57.547 47.619 0.00 0.00 0.00 4.79
146 147 2.764010 TCAACATAGGCATAGTGTCGGT 59.236 45.455 0.00 0.00 0.00 4.69
147 148 3.123804 CAACATAGGCATAGTGTCGGTC 58.876 50.000 0.00 0.00 0.00 4.79
148 149 2.667470 ACATAGGCATAGTGTCGGTCT 58.333 47.619 0.00 0.00 0.00 3.85
149 150 3.828921 ACATAGGCATAGTGTCGGTCTA 58.171 45.455 0.00 0.00 0.00 2.59
150 151 4.408276 ACATAGGCATAGTGTCGGTCTAT 58.592 43.478 0.00 0.00 0.00 1.98
151 152 5.567430 ACATAGGCATAGTGTCGGTCTATA 58.433 41.667 0.00 0.00 0.00 1.31
152 153 5.648526 ACATAGGCATAGTGTCGGTCTATAG 59.351 44.000 0.00 0.00 0.00 1.31
153 154 3.422796 AGGCATAGTGTCGGTCTATAGG 58.577 50.000 0.00 0.00 0.00 2.57
154 155 3.074094 AGGCATAGTGTCGGTCTATAGGA 59.926 47.826 0.00 0.00 0.00 2.94
155 156 3.190953 GGCATAGTGTCGGTCTATAGGAC 59.809 52.174 0.00 0.46 43.79 3.85
156 157 4.073549 GCATAGTGTCGGTCTATAGGACT 58.926 47.826 0.00 0.00 43.97 3.85
157 158 4.154556 GCATAGTGTCGGTCTATAGGACTC 59.845 50.000 0.00 1.36 43.97 3.36
158 159 5.553123 CATAGTGTCGGTCTATAGGACTCT 58.447 45.833 13.29 13.29 43.97 3.24
159 160 4.075963 AGTGTCGGTCTATAGGACTCTC 57.924 50.000 0.00 0.00 43.97 3.20
160 161 2.801679 GTGTCGGTCTATAGGACTCTCG 59.198 54.545 0.00 0.00 43.97 4.04
161 162 2.224233 TGTCGGTCTATAGGACTCTCGG 60.224 54.545 0.00 0.00 43.97 4.63
162 163 2.045524 TCGGTCTATAGGACTCTCGGT 58.954 52.381 0.00 0.00 43.97 4.69
163 164 2.437281 TCGGTCTATAGGACTCTCGGTT 59.563 50.000 0.00 0.00 43.97 4.44
164 165 3.118112 TCGGTCTATAGGACTCTCGGTTT 60.118 47.826 0.00 0.00 43.97 3.27
165 166 3.631227 CGGTCTATAGGACTCTCGGTTTT 59.369 47.826 0.00 0.00 43.97 2.43
166 167 4.497674 CGGTCTATAGGACTCTCGGTTTTG 60.498 50.000 0.00 0.00 43.97 2.44
167 168 4.202131 GGTCTATAGGACTCTCGGTTTTGG 60.202 50.000 0.00 0.00 43.97 3.28
168 169 4.401837 GTCTATAGGACTCTCGGTTTTGGT 59.598 45.833 0.00 0.00 41.46 3.67
169 170 5.021458 TCTATAGGACTCTCGGTTTTGGTT 58.979 41.667 0.00 0.00 0.00 3.67
170 171 2.545537 AGGACTCTCGGTTTTGGTTC 57.454 50.000 0.00 0.00 0.00 3.62
171 172 2.047830 AGGACTCTCGGTTTTGGTTCT 58.952 47.619 0.00 0.00 0.00 3.01
172 173 2.438392 AGGACTCTCGGTTTTGGTTCTT 59.562 45.455 0.00 0.00 0.00 2.52
173 174 3.118000 AGGACTCTCGGTTTTGGTTCTTT 60.118 43.478 0.00 0.00 0.00 2.52
174 175 3.630769 GGACTCTCGGTTTTGGTTCTTTT 59.369 43.478 0.00 0.00 0.00 2.27
175 176 4.261072 GGACTCTCGGTTTTGGTTCTTTTC 60.261 45.833 0.00 0.00 0.00 2.29
176 177 4.524053 ACTCTCGGTTTTGGTTCTTTTCT 58.476 39.130 0.00 0.00 0.00 2.52
177 178 4.948004 ACTCTCGGTTTTGGTTCTTTTCTT 59.052 37.500 0.00 0.00 0.00 2.52
178 179 5.417894 ACTCTCGGTTTTGGTTCTTTTCTTT 59.582 36.000 0.00 0.00 0.00 2.52
179 180 5.886992 TCTCGGTTTTGGTTCTTTTCTTTC 58.113 37.500 0.00 0.00 0.00 2.62
180 181 5.650703 TCTCGGTTTTGGTTCTTTTCTTTCT 59.349 36.000 0.00 0.00 0.00 2.52
181 182 5.886992 TCGGTTTTGGTTCTTTTCTTTCTC 58.113 37.500 0.00 0.00 0.00 2.87
182 183 5.650703 TCGGTTTTGGTTCTTTTCTTTCTCT 59.349 36.000 0.00 0.00 0.00 3.10
183 184 5.971792 CGGTTTTGGTTCTTTTCTTTCTCTC 59.028 40.000 0.00 0.00 0.00 3.20
184 185 6.404293 CGGTTTTGGTTCTTTTCTTTCTCTCA 60.404 38.462 0.00 0.00 0.00 3.27
185 186 7.320399 GGTTTTGGTTCTTTTCTTTCTCTCAA 58.680 34.615 0.00 0.00 0.00 3.02
186 187 7.817478 GGTTTTGGTTCTTTTCTTTCTCTCAAA 59.183 33.333 0.00 0.00 0.00 2.69
187 188 8.648097 GTTTTGGTTCTTTTCTTTCTCTCAAAC 58.352 33.333 0.00 0.00 0.00 2.93
188 189 7.703058 TTGGTTCTTTTCTTTCTCTCAAACT 57.297 32.000 0.00 0.00 0.00 2.66
189 190 7.703058 TGGTTCTTTTCTTTCTCTCAAACTT 57.297 32.000 0.00 0.00 0.00 2.66
190 191 8.122472 TGGTTCTTTTCTTTCTCTCAAACTTT 57.878 30.769 0.00 0.00 0.00 2.66
191 192 8.585018 TGGTTCTTTTCTTTCTCTCAAACTTTT 58.415 29.630 0.00 0.00 0.00 2.27
192 193 9.077674 GGTTCTTTTCTTTCTCTCAAACTTTTC 57.922 33.333 0.00 0.00 0.00 2.29
193 194 8.789743 GTTCTTTTCTTTCTCTCAAACTTTTCG 58.210 33.333 0.00 0.00 0.00 3.46
194 195 8.263940 TCTTTTCTTTCTCTCAAACTTTTCGA 57.736 30.769 0.00 0.00 0.00 3.71
195 196 8.726988 TCTTTTCTTTCTCTCAAACTTTTCGAA 58.273 29.630 0.00 0.00 0.00 3.71
196 197 9.341899 CTTTTCTTTCTCTCAAACTTTTCGAAA 57.658 29.630 6.47 6.47 0.00 3.46
197 198 9.855021 TTTTCTTTCTCTCAAACTTTTCGAAAT 57.145 25.926 12.12 0.00 0.00 2.17
198 199 9.855021 TTTCTTTCTCTCAAACTTTTCGAAATT 57.145 25.926 12.12 0.74 0.00 1.82
199 200 8.841444 TCTTTCTCTCAAACTTTTCGAAATTG 57.159 30.769 12.12 13.21 0.00 2.32
200 201 7.915397 TCTTTCTCTCAAACTTTTCGAAATTGG 59.085 33.333 12.12 7.82 0.00 3.16
201 202 6.693315 TCTCTCAAACTTTTCGAAATTGGT 57.307 33.333 12.12 8.44 0.00 3.67
202 203 7.095695 TCTCTCAAACTTTTCGAAATTGGTT 57.904 32.000 12.12 13.56 0.00 3.67
203 204 6.972328 TCTCTCAAACTTTTCGAAATTGGTTG 59.028 34.615 24.24 24.24 0.00 3.77
204 205 6.626302 TCTCAAACTTTTCGAAATTGGTTGT 58.374 32.000 26.66 13.02 0.00 3.32
205 206 6.529829 TCTCAAACTTTTCGAAATTGGTTGTG 59.470 34.615 26.66 24.96 0.00 3.33
206 207 6.159988 TCAAACTTTTCGAAATTGGTTGTGT 58.840 32.000 26.66 11.98 0.00 3.72
207 208 6.090088 TCAAACTTTTCGAAATTGGTTGTGTG 59.910 34.615 26.66 18.89 0.00 3.82
208 209 3.862845 ACTTTTCGAAATTGGTTGTGTGC 59.137 39.130 12.12 0.00 0.00 4.57
209 210 3.510388 TTTCGAAATTGGTTGTGTGCA 57.490 38.095 6.47 0.00 0.00 4.57
210 211 3.724508 TTCGAAATTGGTTGTGTGCAT 57.275 38.095 0.00 0.00 0.00 3.96
211 212 3.724508 TCGAAATTGGTTGTGTGCATT 57.275 38.095 0.00 0.00 0.00 3.56
212 213 4.052159 TCGAAATTGGTTGTGTGCATTT 57.948 36.364 0.00 0.00 0.00 2.32
213 214 3.801050 TCGAAATTGGTTGTGTGCATTTG 59.199 39.130 0.00 0.00 0.00 2.32
214 215 3.555139 CGAAATTGGTTGTGTGCATTTGT 59.445 39.130 0.00 0.00 0.00 2.83
215 216 4.033817 CGAAATTGGTTGTGTGCATTTGTT 59.966 37.500 0.00 0.00 0.00 2.83
216 217 5.233050 CGAAATTGGTTGTGTGCATTTGTTA 59.767 36.000 0.00 0.00 0.00 2.41
217 218 6.073873 CGAAATTGGTTGTGTGCATTTGTTAT 60.074 34.615 0.00 0.00 0.00 1.89
218 219 6.542574 AATTGGTTGTGTGCATTTGTTATG 57.457 33.333 0.00 0.00 0.00 1.90
219 220 3.388308 TGGTTGTGTGCATTTGTTATGC 58.612 40.909 2.90 2.90 44.76 3.14
226 227 2.214387 GCATTTGTTATGCAGAGGCC 57.786 50.000 0.00 0.00 44.00 5.19
227 228 1.534595 GCATTTGTTATGCAGAGGCCG 60.535 52.381 0.00 0.00 44.00 6.13
228 229 1.066002 CATTTGTTATGCAGAGGCCGG 59.934 52.381 0.00 0.00 40.13 6.13
229 230 0.679640 TTTGTTATGCAGAGGCCGGG 60.680 55.000 2.18 0.00 40.13 5.73
230 231 1.847798 TTGTTATGCAGAGGCCGGGT 61.848 55.000 2.18 0.00 40.13 5.28
231 232 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
232 233 2.297895 TTATGCAGAGGCCGGGTGT 61.298 57.895 2.18 0.00 40.13 4.16
233 234 1.847798 TTATGCAGAGGCCGGGTGTT 61.848 55.000 2.18 0.00 40.13 3.32
234 235 0.978667 TATGCAGAGGCCGGGTGTTA 60.979 55.000 2.18 0.00 40.13 2.41
235 236 2.436115 GCAGAGGCCGGGTGTTAC 60.436 66.667 2.18 0.00 0.00 2.50
236 237 2.955881 GCAGAGGCCGGGTGTTACT 61.956 63.158 2.18 0.00 0.00 2.24
237 238 1.218316 CAGAGGCCGGGTGTTACTC 59.782 63.158 2.18 0.00 0.00 2.59
238 239 1.229082 AGAGGCCGGGTGTTACTCA 60.229 57.895 2.18 0.00 0.00 3.41
239 240 0.617820 AGAGGCCGGGTGTTACTCAT 60.618 55.000 2.18 0.00 0.00 2.90
240 241 1.117150 GAGGCCGGGTGTTACTCATA 58.883 55.000 2.18 0.00 0.00 2.15
241 242 1.483415 GAGGCCGGGTGTTACTCATAA 59.517 52.381 2.18 0.00 0.00 1.90
242 243 2.104281 GAGGCCGGGTGTTACTCATAAT 59.896 50.000 2.18 0.00 0.00 1.28
243 244 2.158813 AGGCCGGGTGTTACTCATAATG 60.159 50.000 2.18 0.00 0.00 1.90
244 245 1.602377 GCCGGGTGTTACTCATAATGC 59.398 52.381 2.18 0.00 0.00 3.56
245 246 2.745152 GCCGGGTGTTACTCATAATGCT 60.745 50.000 2.18 0.00 0.00 3.79
246 247 3.541632 CCGGGTGTTACTCATAATGCTT 58.458 45.455 0.00 0.00 0.00 3.91
247 248 3.945285 CCGGGTGTTACTCATAATGCTTT 59.055 43.478 0.00 0.00 0.00 3.51
248 249 4.201910 CCGGGTGTTACTCATAATGCTTTG 60.202 45.833 0.00 0.00 0.00 2.77
249 250 4.394920 CGGGTGTTACTCATAATGCTTTGT 59.605 41.667 0.00 0.00 0.00 2.83
250 251 5.583061 CGGGTGTTACTCATAATGCTTTGTA 59.417 40.000 0.00 0.00 0.00 2.41
251 252 6.260050 CGGGTGTTACTCATAATGCTTTGTAT 59.740 38.462 0.00 0.00 0.00 2.29
252 253 7.518370 CGGGTGTTACTCATAATGCTTTGTATC 60.518 40.741 0.00 0.00 0.00 2.24
253 254 7.255139 GGGTGTTACTCATAATGCTTTGTATCC 60.255 40.741 0.00 0.00 0.00 2.59
254 255 7.345192 GTGTTACTCATAATGCTTTGTATCCG 58.655 38.462 0.00 0.00 0.00 4.18
255 256 7.011109 GTGTTACTCATAATGCTTTGTATCCGT 59.989 37.037 0.00 0.00 0.00 4.69
256 257 7.551262 TGTTACTCATAATGCTTTGTATCCGTT 59.449 33.333 0.00 0.00 0.00 4.44
257 258 8.395633 GTTACTCATAATGCTTTGTATCCGTTT 58.604 33.333 0.00 0.00 0.00 3.60
258 259 6.785191 ACTCATAATGCTTTGTATCCGTTTG 58.215 36.000 0.00 0.00 0.00 2.93
259 260 6.597672 ACTCATAATGCTTTGTATCCGTTTGA 59.402 34.615 0.00 0.00 0.00 2.69
260 261 7.283127 ACTCATAATGCTTTGTATCCGTTTGAT 59.717 33.333 0.00 0.00 37.49 2.57
261 262 7.416817 TCATAATGCTTTGTATCCGTTTGATG 58.583 34.615 0.00 0.00 34.76 3.07
262 263 3.485947 TGCTTTGTATCCGTTTGATGC 57.514 42.857 0.00 0.00 36.68 3.91
263 264 3.081061 TGCTTTGTATCCGTTTGATGCT 58.919 40.909 0.00 0.00 37.04 3.79
264 265 4.257731 TGCTTTGTATCCGTTTGATGCTA 58.742 39.130 0.00 0.00 37.04 3.49
265 266 4.881273 TGCTTTGTATCCGTTTGATGCTAT 59.119 37.500 0.00 0.00 37.04 2.97
266 267 6.052360 TGCTTTGTATCCGTTTGATGCTATA 58.948 36.000 0.00 0.00 37.04 1.31
267 268 6.710295 TGCTTTGTATCCGTTTGATGCTATAT 59.290 34.615 0.00 0.00 37.04 0.86
268 269 7.228507 TGCTTTGTATCCGTTTGATGCTATATT 59.771 33.333 0.00 0.00 37.04 1.28
269 270 8.076178 GCTTTGTATCCGTTTGATGCTATATTT 58.924 33.333 0.00 0.00 37.04 1.40
296 297 7.908193 ATTTTTAGGTAATAAAAGCGCATCG 57.092 32.000 11.47 0.00 42.73 3.84
297 298 6.665474 TTTTAGGTAATAAAAGCGCATCGA 57.335 33.333 11.47 0.00 38.22 3.59
298 299 5.900339 TTAGGTAATAAAAGCGCATCGAG 57.100 39.130 11.47 0.00 0.00 4.04
299 300 4.054780 AGGTAATAAAAGCGCATCGAGA 57.945 40.909 11.47 0.00 0.00 4.04
300 301 4.439057 AGGTAATAAAAGCGCATCGAGAA 58.561 39.130 11.47 0.00 0.00 2.87
301 302 4.873827 AGGTAATAAAAGCGCATCGAGAAA 59.126 37.500 11.47 0.00 0.00 2.52
302 303 5.353123 AGGTAATAAAAGCGCATCGAGAAAA 59.647 36.000 11.47 0.00 0.00 2.29
303 304 6.025280 GGTAATAAAAGCGCATCGAGAAAAA 58.975 36.000 11.47 0.00 0.00 1.94
322 323 0.681175 AATTCCACAGCCAAACCAGC 59.319 50.000 0.00 0.00 0.00 4.85
324 325 1.391157 TTCCACAGCCAAACCAGCAC 61.391 55.000 0.00 0.00 0.00 4.40
327 328 1.076777 ACAGCCAAACCAGCACACT 60.077 52.632 0.00 0.00 0.00 3.55
331 332 1.227823 CCAAACCAGCACACTCGGA 60.228 57.895 0.00 0.00 0.00 4.55
332 333 0.606401 CCAAACCAGCACACTCGGAT 60.606 55.000 0.00 0.00 0.00 4.18
362 363 6.258507 CACATCAATCGACATATTTCTCCACA 59.741 38.462 0.00 0.00 0.00 4.17
396 397 3.699894 CAGCCCGTGGAGCTCACT 61.700 66.667 17.19 0.00 43.94 3.41
407 408 2.286872 GGAGCTCACTCAATCATGGTG 58.713 52.381 17.19 0.00 45.42 4.17
408 409 2.286872 GAGCTCACTCAATCATGGTGG 58.713 52.381 9.40 0.00 42.93 4.61
409 410 0.737219 GCTCACTCAATCATGGTGGC 59.263 55.000 0.00 0.00 32.13 5.01
410 411 1.681166 GCTCACTCAATCATGGTGGCT 60.681 52.381 0.00 0.00 32.13 4.75
412 413 1.629861 TCACTCAATCATGGTGGCTGA 59.370 47.619 0.00 0.00 32.13 4.26
413 414 1.741706 CACTCAATCATGGTGGCTGAC 59.258 52.381 0.00 0.00 0.00 3.51
418 422 3.455543 TCAATCATGGTGGCTGACTCATA 59.544 43.478 0.00 0.00 0.00 2.15
424 428 1.486310 GGTGGCTGACTCATATGACCA 59.514 52.381 0.00 4.58 0.00 4.02
425 429 2.555199 GTGGCTGACTCATATGACCAC 58.445 52.381 20.50 20.50 39.31 4.16
441 445 1.526575 CCACATGGAAAAGGCACGCT 61.527 55.000 0.00 0.00 37.39 5.07
448 452 0.863144 GAAAAGGCACGCTACGAACA 59.137 50.000 0.00 0.00 0.00 3.18
463 467 2.159707 ACGAACATGGCGAAAAGAATCG 60.160 45.455 15.69 0.00 45.41 3.34
464 468 2.785679 GAACATGGCGAAAAGAATCGG 58.214 47.619 0.00 0.00 42.93 4.18
530 534 2.608261 GCAAAGCGTACTCACTCACTCT 60.608 50.000 0.00 0.00 0.00 3.24
548 552 4.273480 CACTCTCACGGTTCACTGAAAAAT 59.727 41.667 0.00 0.00 0.00 1.82
549 553 5.465390 CACTCTCACGGTTCACTGAAAAATA 59.535 40.000 0.00 0.00 0.00 1.40
550 554 6.018262 CACTCTCACGGTTCACTGAAAAATAA 60.018 38.462 0.00 0.00 0.00 1.40
578 2591 4.877323 ATTATTTTCGCCGAAAGAGACC 57.123 40.909 12.50 0.00 32.93 3.85
579 2592 2.178912 ATTTTCGCCGAAAGAGACCA 57.821 45.000 12.50 0.00 32.93 4.02
580 2593 1.223187 TTTTCGCCGAAAGAGACCAC 58.777 50.000 12.50 0.00 32.93 4.16
581 2594 0.601841 TTTCGCCGAAAGAGACCACC 60.602 55.000 8.43 0.00 0.00 4.61
582 2595 2.434359 CGCCGAAAGAGACCACCC 60.434 66.667 0.00 0.00 0.00 4.61
583 2596 2.747686 GCCGAAAGAGACCACCCA 59.252 61.111 0.00 0.00 0.00 4.51
584 2597 1.299976 GCCGAAAGAGACCACCCAT 59.700 57.895 0.00 0.00 0.00 4.00
585 2598 1.026718 GCCGAAAGAGACCACCCATG 61.027 60.000 0.00 0.00 0.00 3.66
586 2599 0.324943 CCGAAAGAGACCACCCATGT 59.675 55.000 0.00 0.00 0.00 3.21
587 2600 1.553248 CCGAAAGAGACCACCCATGTA 59.447 52.381 0.00 0.00 0.00 2.29
588 2601 2.027561 CCGAAAGAGACCACCCATGTAA 60.028 50.000 0.00 0.00 0.00 2.41
590 2603 3.684788 CGAAAGAGACCACCCATGTAAAG 59.315 47.826 0.00 0.00 0.00 1.85
592 2605 2.915869 AGAGACCACCCATGTAAAGGA 58.084 47.619 0.00 0.00 0.00 3.36
597 2610 5.402630 AGACCACCCATGTAAAGGAAAAAT 58.597 37.500 0.00 0.00 0.00 1.82
604 2617 7.714813 CACCCATGTAAAGGAAAAATGAAAAGT 59.285 33.333 0.00 0.00 0.00 2.66
605 2618 7.931407 ACCCATGTAAAGGAAAAATGAAAAGTC 59.069 33.333 0.00 0.00 0.00 3.01
606 2619 7.387673 CCCATGTAAAGGAAAAATGAAAAGTCC 59.612 37.037 0.00 0.00 0.00 3.85
608 2621 6.508777 TGTAAAGGAAAAATGAAAAGTCCGG 58.491 36.000 0.00 0.00 33.38 5.14
655 2676 4.467084 GGCTGGATCGTTCGCCCA 62.467 66.667 2.02 6.17 36.56 5.36
656 2677 3.195698 GCTGGATCGTTCGCCCAC 61.196 66.667 3.09 0.00 0.00 4.61
657 2678 2.511600 CTGGATCGTTCGCCCACC 60.512 66.667 3.09 0.00 0.00 4.61
658 2679 4.444838 TGGATCGTTCGCCCACCG 62.445 66.667 3.09 0.00 38.61 4.94
736 2757 2.787915 GCGAGCTAGCCAACAAGC 59.212 61.111 12.13 4.56 39.08 4.01
737 2758 2.754995 GCGAGCTAGCCAACAAGCC 61.755 63.158 12.13 0.00 39.64 4.35
774 2795 1.402325 GCAGGATACAACCAAAACGCC 60.402 52.381 0.00 0.00 41.41 5.68
776 2797 0.528924 GGATACAACCAAAACGCCCC 59.471 55.000 0.00 0.00 0.00 5.80
777 2798 1.249407 GATACAACCAAAACGCCCCA 58.751 50.000 0.00 0.00 0.00 4.96
778 2799 1.822371 GATACAACCAAAACGCCCCAT 59.178 47.619 0.00 0.00 0.00 4.00
780 2801 0.469144 ACAACCAAAACGCCCCATCT 60.469 50.000 0.00 0.00 0.00 2.90
782 2803 0.898326 AACCAAAACGCCCCATCTCC 60.898 55.000 0.00 0.00 0.00 3.71
783 2804 2.406616 CCAAAACGCCCCATCTCCG 61.407 63.158 0.00 0.00 0.00 4.63
830 2863 2.996621 CTGCAACTAGCCAACTACAGTC 59.003 50.000 0.00 0.00 44.83 3.51
866 2899 3.512516 GTCGCTCCAGCCAATGCC 61.513 66.667 0.00 0.00 38.69 4.40
892 2940 7.348274 CCCCCTAGATAATATCTTATCAAGCCA 59.652 40.741 8.20 0.00 43.83 4.75
981 3033 0.043334 CAAAGAGAGAGGGAGGGGGA 59.957 60.000 0.00 0.00 0.00 4.81
1183 3249 6.501781 ACGCATGTACTATAACCTACACTTC 58.498 40.000 0.00 0.00 0.00 3.01
1225 3291 2.693797 ATGCTTTGCTTTGTCGACTG 57.306 45.000 17.92 8.16 0.00 3.51
1342 3408 3.486584 GCGCATCAACTTCTTCTTCTTG 58.513 45.455 0.30 0.00 0.00 3.02
1343 3409 3.187227 GCGCATCAACTTCTTCTTCTTGA 59.813 43.478 0.30 0.00 0.00 3.02
1377 3443 0.673333 TAACTGCATGGTGGCTCACG 60.673 55.000 0.00 0.00 34.83 4.35
1568 3635 5.496556 ACAACCAATCGATCCATCAACTAA 58.503 37.500 0.00 0.00 0.00 2.24
1569 3636 5.943416 ACAACCAATCGATCCATCAACTAAA 59.057 36.000 0.00 0.00 0.00 1.85
1578 3646 5.527214 CGATCCATCAACTAAATTGTAGCCA 59.473 40.000 0.00 0.00 39.54 4.75
1794 3862 2.818432 CCCTAGCTACATAGTACCACGG 59.182 54.545 0.00 0.00 0.00 4.94
1829 3902 2.125350 GGCGAGCTGGAGGACAAG 60.125 66.667 0.00 0.00 0.00 3.16
1830 3903 2.817396 GCGAGCTGGAGGACAAGC 60.817 66.667 0.00 0.00 0.00 4.01
1831 3904 2.659016 CGAGCTGGAGGACAAGCA 59.341 61.111 0.00 0.00 0.00 3.91
1832 3905 1.447489 CGAGCTGGAGGACAAGCAG 60.447 63.158 0.00 0.00 0.00 4.24
1833 3906 1.744741 GAGCTGGAGGACAAGCAGC 60.745 63.158 0.00 0.00 39.01 5.25
1834 3907 2.033141 GCTGGAGGACAAGCAGCA 59.967 61.111 0.00 0.00 38.62 4.41
1972 4067 2.668212 ACGGGCGTGACATGGTTG 60.668 61.111 0.00 0.00 0.00 3.77
1973 4068 3.430862 CGGGCGTGACATGGTTGG 61.431 66.667 0.00 0.00 0.00 3.77
1974 4069 2.282180 GGGCGTGACATGGTTGGT 60.282 61.111 0.00 0.00 0.00 3.67
1975 4070 2.625823 GGGCGTGACATGGTTGGTG 61.626 63.158 0.00 0.00 0.00 4.17
1976 4071 2.255252 GCGTGACATGGTTGGTGC 59.745 61.111 0.00 0.00 0.00 5.01
1977 4072 2.260869 GCGTGACATGGTTGGTGCT 61.261 57.895 0.00 0.00 0.00 4.40
1978 4073 1.795170 GCGTGACATGGTTGGTGCTT 61.795 55.000 0.00 0.00 0.00 3.91
1979 4074 0.238289 CGTGACATGGTTGGTGCTTC 59.762 55.000 0.00 0.00 0.00 3.86
1980 4075 1.317613 GTGACATGGTTGGTGCTTCA 58.682 50.000 0.00 0.00 0.00 3.02
1981 4076 1.267806 GTGACATGGTTGGTGCTTCAG 59.732 52.381 0.00 0.00 0.00 3.02
1982 4077 0.242017 GACATGGTTGGTGCTTCAGC 59.758 55.000 0.00 0.00 42.50 4.26
2065 4168 7.887996 TGCTTTGCAGGATTTAATTTACTTG 57.112 32.000 0.00 0.00 33.32 3.16
2066 4169 7.665690 TGCTTTGCAGGATTTAATTTACTTGA 58.334 30.769 0.00 0.00 33.32 3.02
2086 4189 4.641396 TGATTGATGAGTTGGTTCGTCTT 58.359 39.130 0.00 0.00 34.80 3.01
2087 4190 5.063204 TGATTGATGAGTTGGTTCGTCTTT 58.937 37.500 0.00 0.00 34.80 2.52
2088 4191 4.811555 TTGATGAGTTGGTTCGTCTTTG 57.188 40.909 0.00 0.00 34.80 2.77
2089 4192 2.548057 TGATGAGTTGGTTCGTCTTTGC 59.452 45.455 0.00 0.00 34.80 3.68
2090 4193 1.305201 TGAGTTGGTTCGTCTTTGCC 58.695 50.000 0.00 0.00 0.00 4.52
2091 4194 1.305201 GAGTTGGTTCGTCTTTGCCA 58.695 50.000 0.00 0.00 0.00 4.92
2092 4195 1.264288 GAGTTGGTTCGTCTTTGCCAG 59.736 52.381 0.00 0.00 32.09 4.85
2093 4196 1.021968 GTTGGTTCGTCTTTGCCAGT 58.978 50.000 0.00 0.00 32.09 4.00
2134 4244 1.385743 GCTCGTACGTGTTCATGTCAC 59.614 52.381 16.05 11.62 0.00 3.67
2147 4257 5.064579 TGTTCATGTCACGCATAATTGGTAG 59.935 40.000 0.00 0.00 35.74 3.18
2151 4264 5.333299 TGTCACGCATAATTGGTAGTACT 57.667 39.130 0.00 0.00 0.00 2.73
2152 4265 6.453926 TGTCACGCATAATTGGTAGTACTA 57.546 37.500 0.00 0.00 0.00 1.82
2204 4317 4.151157 CAGTGAATTTTGCTGCTTAAAGCC 59.849 41.667 0.00 0.00 41.51 4.35
2211 4324 2.305928 TGCTGCTTAAAGCCACTTTGA 58.694 42.857 0.00 0.00 41.51 2.69
2226 4339 5.747545 GCCACTTTGAATTTTGGGGGTAATT 60.748 40.000 0.00 0.00 0.00 1.40
2273 4386 7.013369 TGTGTCGTCTGAATTATGTATAGAGCT 59.987 37.037 0.00 0.00 0.00 4.09
2341 4455 1.736032 GCGACGCCTTTCTGAGTGTAT 60.736 52.381 9.14 0.00 0.00 2.29
2345 4459 1.675714 CGCCTTTCTGAGTGTATGGCA 60.676 52.381 0.00 0.00 36.51 4.92
2363 4479 1.522355 AGCCGGTTCGATCTGCATG 60.522 57.895 1.90 0.00 0.00 4.06
2367 4483 1.860950 CCGGTTCGATCTGCATGTAAG 59.139 52.381 0.00 0.00 0.00 2.34
2389 4505 9.659830 GTAAGGTGATTAGTTTTGTAAACACTG 57.340 33.333 5.23 0.00 36.46 3.66
2391 4507 6.546034 AGGTGATTAGTTTTGTAAACACTGCT 59.454 34.615 5.23 0.00 36.46 4.24
2406 4522 3.329386 CACTGCTTGTGCTTAGCTTAGA 58.671 45.455 5.60 0.00 40.06 2.10
2407 4523 3.124297 CACTGCTTGTGCTTAGCTTAGAC 59.876 47.826 5.60 0.07 40.06 2.59
2408 4524 3.244215 ACTGCTTGTGCTTAGCTTAGACA 60.244 43.478 5.60 2.72 39.38 3.41
2409 4525 3.738982 TGCTTGTGCTTAGCTTAGACAA 58.261 40.909 5.60 9.98 39.38 3.18
2410 4526 3.748048 TGCTTGTGCTTAGCTTAGACAAG 59.252 43.478 24.80 24.80 44.14 3.16
2411 4527 3.748568 GCTTGTGCTTAGCTTAGACAAGT 59.251 43.478 26.92 0.00 43.52 3.16
2413 4529 5.408604 GCTTGTGCTTAGCTTAGACAAGTAA 59.591 40.000 26.92 12.94 43.52 2.24
2414 4530 6.401581 GCTTGTGCTTAGCTTAGACAAGTAAG 60.402 42.308 26.92 18.42 43.52 2.34
2416 4532 5.011738 TGTGCTTAGCTTAGACAAGTAAGGT 59.988 40.000 5.60 1.42 42.15 3.50
2417 4533 5.577554 GTGCTTAGCTTAGACAAGTAAGGTC 59.422 44.000 5.60 0.00 40.41 3.85
2419 4535 3.233684 AGCTTAGACAAGTAAGGTCGC 57.766 47.619 0.00 0.00 36.24 5.19
2420 4536 2.826725 AGCTTAGACAAGTAAGGTCGCT 59.173 45.455 0.00 0.00 36.24 4.93
2421 4537 4.015084 AGCTTAGACAAGTAAGGTCGCTA 58.985 43.478 0.00 0.00 36.24 4.26
2422 4538 4.645588 AGCTTAGACAAGTAAGGTCGCTAT 59.354 41.667 0.00 0.00 36.24 2.97
2424 4540 6.490721 AGCTTAGACAAGTAAGGTCGCTATAT 59.509 38.462 0.00 0.00 36.24 0.86
2425 4541 6.583050 GCTTAGACAAGTAAGGTCGCTATATG 59.417 42.308 0.00 0.00 40.20 1.78
2428 4544 6.505272 AGACAAGTAAGGTCGCTATATGAAC 58.495 40.000 0.00 0.00 40.20 3.18
2429 4545 5.598769 ACAAGTAAGGTCGCTATATGAACC 58.401 41.667 0.00 0.00 0.00 3.62
2430 4546 5.128171 ACAAGTAAGGTCGCTATATGAACCA 59.872 40.000 0.00 0.00 0.00 3.67
2431 4547 5.864418 AGTAAGGTCGCTATATGAACCAA 57.136 39.130 0.00 0.00 0.00 3.67
2432 4548 5.598769 AGTAAGGTCGCTATATGAACCAAC 58.401 41.667 0.00 0.00 0.00 3.77
2434 4550 3.039011 AGGTCGCTATATGAACCAACCT 58.961 45.455 0.00 0.00 0.00 3.50
2435 4551 4.220724 AGGTCGCTATATGAACCAACCTA 58.779 43.478 0.00 0.00 34.22 3.08
2454 4574 5.694995 ACCTATGGTTGAATGGTTAGATGG 58.305 41.667 0.00 0.00 27.29 3.51
2455 4575 5.072741 CCTATGGTTGAATGGTTAGATGGG 58.927 45.833 0.00 0.00 0.00 4.00
2456 4576 2.733956 TGGTTGAATGGTTAGATGGGC 58.266 47.619 0.00 0.00 0.00 5.36
2466 4586 2.706190 GGTTAGATGGGCAGTGGTATCT 59.294 50.000 0.00 0.00 34.51 1.98
2467 4587 3.136626 GGTTAGATGGGCAGTGGTATCTT 59.863 47.826 0.00 0.00 32.54 2.40
2468 4588 4.385310 GGTTAGATGGGCAGTGGTATCTTT 60.385 45.833 0.00 0.00 32.54 2.52
2472 4592 1.211949 TGGGCAGTGGTATCTTTAGCC 59.788 52.381 0.00 0.00 39.86 3.93
2478 4598 4.384056 CAGTGGTATCTTTAGCCCATCAG 58.616 47.826 0.00 0.00 0.00 2.90
2499 8405 2.490902 GGGTTCAAATCCTGGTGACCTT 60.491 50.000 2.11 0.00 0.00 3.50
2611 8517 0.459078 GCGGGTACTGAGTTAGGGTC 59.541 60.000 0.00 0.00 36.31 4.46
2711 8617 5.091261 ACCTTAGATGCTTAGGAGTGTTG 57.909 43.478 6.50 0.00 34.33 3.33
2712 8618 3.873952 CCTTAGATGCTTAGGAGTGTTGC 59.126 47.826 0.00 0.00 32.62 4.17
2768 8674 1.277579 TGGCATGCCCAATTCATTGT 58.722 45.000 33.44 0.00 41.82 2.71
2769 8675 1.066071 TGGCATGCCCAATTCATTGTG 60.066 47.619 33.44 0.00 41.82 3.33
2770 8676 1.011333 GCATGCCCAATTCATTGTGC 58.989 50.000 6.36 0.46 40.78 4.57
2774 8680 2.701107 TGCCCAATTCATTGTGCATTG 58.299 42.857 5.67 0.00 44.18 2.82
2775 8681 2.038689 TGCCCAATTCATTGTGCATTGT 59.961 40.909 5.67 0.00 44.18 2.71
2776 8682 2.674357 GCCCAATTCATTGTGCATTGTC 59.326 45.455 2.49 0.00 40.24 3.18
2777 8683 3.865302 GCCCAATTCATTGTGCATTGTCA 60.865 43.478 2.49 0.00 40.24 3.58
2778 8684 4.509616 CCCAATTCATTGTGCATTGTCAT 58.490 39.130 0.00 0.00 36.06 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.203994 TGGTACTCCGCTCTTTGTAGC 59.796 52.381 0.00 0.00 39.21 3.58
3 4 3.587797 TTGGTACTCCGCTCTTTGTAG 57.412 47.619 0.00 0.00 36.30 2.74
4 5 3.428452 CGATTGGTACTCCGCTCTTTGTA 60.428 47.826 0.00 0.00 36.30 2.41
5 6 2.674177 CGATTGGTACTCCGCTCTTTGT 60.674 50.000 0.00 0.00 36.30 2.83
6 7 1.927174 CGATTGGTACTCCGCTCTTTG 59.073 52.381 0.00 0.00 36.30 2.77
7 8 1.549170 ACGATTGGTACTCCGCTCTTT 59.451 47.619 0.00 0.00 36.30 2.52
8 9 1.183549 ACGATTGGTACTCCGCTCTT 58.816 50.000 0.00 0.00 36.30 2.85
9 10 1.135083 CAACGATTGGTACTCCGCTCT 60.135 52.381 0.00 0.00 36.30 4.09
10 11 1.278238 CAACGATTGGTACTCCGCTC 58.722 55.000 0.00 0.00 36.30 5.03
11 12 0.606604 ACAACGATTGGTACTCCGCT 59.393 50.000 0.00 0.00 36.30 5.52
12 13 1.392510 GAACAACGATTGGTACTCCGC 59.607 52.381 0.00 0.00 36.30 5.54
13 14 2.679450 TGAACAACGATTGGTACTCCG 58.321 47.619 0.00 0.00 36.30 4.63
14 15 3.435671 CCTTGAACAACGATTGGTACTCC 59.564 47.826 0.00 0.00 34.12 3.85
15 16 3.120304 GCCTTGAACAACGATTGGTACTC 60.120 47.826 0.00 0.00 34.12 2.59
16 17 2.812011 GCCTTGAACAACGATTGGTACT 59.188 45.455 0.00 0.00 34.12 2.73
17 18 2.550606 TGCCTTGAACAACGATTGGTAC 59.449 45.455 0.00 0.00 34.12 3.34
18 19 2.811431 CTGCCTTGAACAACGATTGGTA 59.189 45.455 0.00 0.00 34.12 3.25
19 20 1.608590 CTGCCTTGAACAACGATTGGT 59.391 47.619 0.00 0.00 34.12 3.67
20 21 1.608590 ACTGCCTTGAACAACGATTGG 59.391 47.619 0.00 0.00 34.12 3.16
21 22 2.033299 ACACTGCCTTGAACAACGATTG 59.967 45.455 0.00 0.00 0.00 2.67
22 23 2.033299 CACACTGCCTTGAACAACGATT 59.967 45.455 0.00 0.00 0.00 3.34
23 24 1.603802 CACACTGCCTTGAACAACGAT 59.396 47.619 0.00 0.00 0.00 3.73
24 25 1.013596 CACACTGCCTTGAACAACGA 58.986 50.000 0.00 0.00 0.00 3.85
25 26 0.732571 ACACACTGCCTTGAACAACG 59.267 50.000 0.00 0.00 0.00 4.10
26 27 2.286184 CGTACACACTGCCTTGAACAAC 60.286 50.000 0.00 0.00 0.00 3.32
27 28 1.937223 CGTACACACTGCCTTGAACAA 59.063 47.619 0.00 0.00 0.00 2.83
28 29 1.577468 CGTACACACTGCCTTGAACA 58.423 50.000 0.00 0.00 0.00 3.18
29 30 0.234884 GCGTACACACTGCCTTGAAC 59.765 55.000 0.00 0.00 0.00 3.18
30 31 1.218875 CGCGTACACACTGCCTTGAA 61.219 55.000 0.00 0.00 0.00 2.69
31 32 1.663388 CGCGTACACACTGCCTTGA 60.663 57.895 0.00 0.00 0.00 3.02
32 33 2.667318 CCGCGTACACACTGCCTTG 61.667 63.158 4.92 0.00 0.00 3.61
33 34 2.357034 CCGCGTACACACTGCCTT 60.357 61.111 4.92 0.00 0.00 4.35
34 35 3.159858 AACCGCGTACACACTGCCT 62.160 57.895 4.92 0.00 0.00 4.75
35 36 2.663852 AACCGCGTACACACTGCC 60.664 61.111 4.92 0.00 0.00 4.85
36 37 1.492319 TTCAACCGCGTACACACTGC 61.492 55.000 4.92 0.00 0.00 4.40
37 38 0.506932 CTTCAACCGCGTACACACTG 59.493 55.000 4.92 0.00 0.00 3.66
38 39 1.219522 GCTTCAACCGCGTACACACT 61.220 55.000 4.92 0.00 0.00 3.55
39 40 1.203313 GCTTCAACCGCGTACACAC 59.797 57.895 4.92 0.00 0.00 3.82
40 41 0.601576 ATGCTTCAACCGCGTACACA 60.602 50.000 4.92 0.00 0.00 3.72
41 42 0.179225 CATGCTTCAACCGCGTACAC 60.179 55.000 4.92 0.00 0.00 2.90
42 43 1.906994 GCATGCTTCAACCGCGTACA 61.907 55.000 11.37 0.00 0.00 2.90
43 44 1.226018 GCATGCTTCAACCGCGTAC 60.226 57.895 11.37 0.00 0.00 3.67
44 45 2.735677 CGCATGCTTCAACCGCGTA 61.736 57.895 17.13 0.00 40.99 4.42
45 46 4.088762 CGCATGCTTCAACCGCGT 62.089 61.111 17.13 0.00 40.99 6.01
46 47 4.817063 CCGCATGCTTCAACCGCG 62.817 66.667 17.13 0.00 45.25 6.46
56 57 4.530857 ACCTCCGTAGCCGCATGC 62.531 66.667 7.91 7.91 41.71 4.06
57 58 1.024579 AAAACCTCCGTAGCCGCATG 61.025 55.000 0.00 0.00 0.00 4.06
58 59 0.322187 AAAAACCTCCGTAGCCGCAT 60.322 50.000 0.00 0.00 0.00 4.73
59 60 0.952010 GAAAAACCTCCGTAGCCGCA 60.952 55.000 0.00 0.00 0.00 5.69
60 61 1.642037 GGAAAAACCTCCGTAGCCGC 61.642 60.000 0.00 0.00 35.41 6.53
61 62 1.022982 GGGAAAAACCTCCGTAGCCG 61.023 60.000 0.00 0.00 36.21 5.52
62 63 0.037160 TGGGAAAAACCTCCGTAGCC 59.963 55.000 0.00 0.00 36.21 3.93
63 64 1.538512 GTTGGGAAAAACCTCCGTAGC 59.461 52.381 0.00 0.00 36.21 3.58
64 65 2.853705 TGTTGGGAAAAACCTCCGTAG 58.146 47.619 0.00 0.00 36.21 3.51
65 66 3.150767 CATGTTGGGAAAAACCTCCGTA 58.849 45.455 0.00 0.00 36.21 4.02
66 67 1.960689 CATGTTGGGAAAAACCTCCGT 59.039 47.619 0.00 0.00 36.21 4.69
67 68 1.272212 CCATGTTGGGAAAAACCTCCG 59.728 52.381 0.00 0.00 36.21 4.63
79 80 0.683828 TATGCTGCCACCCATGTTGG 60.684 55.000 6.28 6.28 37.25 3.77
80 81 1.135024 GTTATGCTGCCACCCATGTTG 60.135 52.381 0.00 0.00 0.00 3.33
81 82 1.185315 GTTATGCTGCCACCCATGTT 58.815 50.000 0.00 0.00 0.00 2.71
82 83 0.684153 GGTTATGCTGCCACCCATGT 60.684 55.000 0.00 0.00 0.00 3.21
83 84 2.118132 GGTTATGCTGCCACCCATG 58.882 57.895 0.00 0.00 0.00 3.66
84 85 4.684623 GGTTATGCTGCCACCCAT 57.315 55.556 0.00 0.00 0.00 4.00
87 88 2.442087 GGGGGTTATGCTGCCACC 60.442 66.667 0.00 0.36 41.70 4.61
88 89 2.828549 CGGGGGTTATGCTGCCAC 60.829 66.667 0.00 0.00 0.00 5.01
89 90 4.122149 CCGGGGGTTATGCTGCCA 62.122 66.667 0.00 0.00 0.00 4.92
90 91 2.640581 AATCCGGGGGTTATGCTGCC 62.641 60.000 0.00 0.00 0.00 4.85
91 92 1.152756 AATCCGGGGGTTATGCTGC 60.153 57.895 0.00 0.00 0.00 5.25
92 93 0.182537 TCAATCCGGGGGTTATGCTG 59.817 55.000 0.00 0.00 0.00 4.41
93 94 0.182775 GTCAATCCGGGGGTTATGCT 59.817 55.000 0.00 0.00 0.00 3.79
94 95 0.822121 GGTCAATCCGGGGGTTATGC 60.822 60.000 0.00 0.00 0.00 3.14
95 96 0.179001 GGGTCAATCCGGGGGTTATG 60.179 60.000 0.00 0.00 37.00 1.90
96 97 0.625091 TGGGTCAATCCGGGGGTTAT 60.625 55.000 0.00 0.00 37.00 1.89
97 98 1.229886 TGGGTCAATCCGGGGGTTA 60.230 57.895 0.00 0.00 37.00 2.85
98 99 2.533232 TGGGTCAATCCGGGGGTT 60.533 61.111 0.00 0.00 37.00 4.11
99 100 3.335729 GTGGGTCAATCCGGGGGT 61.336 66.667 0.00 0.00 37.00 4.95
100 101 4.123545 GGTGGGTCAATCCGGGGG 62.124 72.222 0.00 0.00 37.00 5.40
101 102 2.624674 GATGGTGGGTCAATCCGGGG 62.625 65.000 0.00 0.00 37.00 5.73
102 103 1.152963 GATGGTGGGTCAATCCGGG 60.153 63.158 0.00 0.00 37.00 5.73
103 104 0.748005 GTGATGGTGGGTCAATCCGG 60.748 60.000 0.00 0.00 37.00 5.14
104 105 0.253044 AGTGATGGTGGGTCAATCCG 59.747 55.000 0.00 0.00 37.00 4.18
105 106 2.514458 AAGTGATGGTGGGTCAATCC 57.486 50.000 0.00 0.00 0.00 3.01
106 107 3.420893 TGAAAGTGATGGTGGGTCAATC 58.579 45.455 0.00 0.00 0.00 2.67
107 108 3.524095 TGAAAGTGATGGTGGGTCAAT 57.476 42.857 0.00 0.00 0.00 2.57
108 109 2.955660 GTTGAAAGTGATGGTGGGTCAA 59.044 45.455 0.00 0.00 0.00 3.18
109 110 2.092158 TGTTGAAAGTGATGGTGGGTCA 60.092 45.455 0.00 0.00 0.00 4.02
110 111 2.582052 TGTTGAAAGTGATGGTGGGTC 58.418 47.619 0.00 0.00 0.00 4.46
111 112 2.746279 TGTTGAAAGTGATGGTGGGT 57.254 45.000 0.00 0.00 0.00 4.51
112 113 3.696051 CCTATGTTGAAAGTGATGGTGGG 59.304 47.826 0.00 0.00 0.00 4.61
113 114 3.129287 GCCTATGTTGAAAGTGATGGTGG 59.871 47.826 0.00 0.00 0.00 4.61
114 115 3.758023 TGCCTATGTTGAAAGTGATGGTG 59.242 43.478 0.00 0.00 0.00 4.17
115 116 4.032960 TGCCTATGTTGAAAGTGATGGT 57.967 40.909 0.00 0.00 0.00 3.55
116 117 5.824624 ACTATGCCTATGTTGAAAGTGATGG 59.175 40.000 0.00 0.00 0.00 3.51
117 118 6.317140 ACACTATGCCTATGTTGAAAGTGATG 59.683 38.462 6.18 0.00 37.22 3.07
118 119 6.418101 ACACTATGCCTATGTTGAAAGTGAT 58.582 36.000 6.18 0.00 37.22 3.06
119 120 5.804639 ACACTATGCCTATGTTGAAAGTGA 58.195 37.500 6.18 0.00 37.22 3.41
120 121 5.220472 CGACACTATGCCTATGTTGAAAGTG 60.220 44.000 0.00 0.00 39.14 3.16
121 122 4.870426 CGACACTATGCCTATGTTGAAAGT 59.130 41.667 0.00 0.00 30.45 2.66
122 123 4.271049 CCGACACTATGCCTATGTTGAAAG 59.729 45.833 0.00 0.00 30.45 2.62
123 124 4.188462 CCGACACTATGCCTATGTTGAAA 58.812 43.478 0.00 0.00 30.45 2.69
124 125 3.196901 ACCGACACTATGCCTATGTTGAA 59.803 43.478 0.00 0.00 30.45 2.69
125 126 2.764010 ACCGACACTATGCCTATGTTGA 59.236 45.455 0.00 0.00 30.45 3.18
126 127 3.123804 GACCGACACTATGCCTATGTTG 58.876 50.000 0.00 0.00 0.00 3.33
127 128 3.031736 AGACCGACACTATGCCTATGTT 58.968 45.455 0.00 0.00 0.00 2.71
128 129 2.667470 AGACCGACACTATGCCTATGT 58.333 47.619 0.00 0.00 0.00 2.29
129 130 5.066634 CCTATAGACCGACACTATGCCTATG 59.933 48.000 0.00 0.00 33.43 2.23
130 131 5.045066 TCCTATAGACCGACACTATGCCTAT 60.045 44.000 0.00 0.00 33.43 2.57
131 132 4.287845 TCCTATAGACCGACACTATGCCTA 59.712 45.833 0.00 0.00 33.43 3.93
132 133 3.074094 TCCTATAGACCGACACTATGCCT 59.926 47.826 0.00 0.00 33.43 4.75
133 134 3.190953 GTCCTATAGACCGACACTATGCC 59.809 52.174 0.00 0.00 39.84 4.40
134 135 4.422546 GTCCTATAGACCGACACTATGC 57.577 50.000 0.00 0.00 39.84 3.14
145 146 4.401837 ACCAAAACCGAGAGTCCTATAGAC 59.598 45.833 0.00 0.00 46.71 2.59
146 147 4.607239 ACCAAAACCGAGAGTCCTATAGA 58.393 43.478 0.00 0.00 0.00 1.98
147 148 5.127356 AGAACCAAAACCGAGAGTCCTATAG 59.873 44.000 0.00 0.00 0.00 1.31
148 149 5.021458 AGAACCAAAACCGAGAGTCCTATA 58.979 41.667 0.00 0.00 0.00 1.31
149 150 3.838903 AGAACCAAAACCGAGAGTCCTAT 59.161 43.478 0.00 0.00 0.00 2.57
150 151 3.236896 AGAACCAAAACCGAGAGTCCTA 58.763 45.455 0.00 0.00 0.00 2.94
151 152 2.047830 AGAACCAAAACCGAGAGTCCT 58.952 47.619 0.00 0.00 0.00 3.85
152 153 2.545537 AGAACCAAAACCGAGAGTCC 57.454 50.000 0.00 0.00 0.00 3.85
153 154 4.575236 AGAAAAGAACCAAAACCGAGAGTC 59.425 41.667 0.00 0.00 0.00 3.36
154 155 4.524053 AGAAAAGAACCAAAACCGAGAGT 58.476 39.130 0.00 0.00 0.00 3.24
155 156 5.500645 AAGAAAAGAACCAAAACCGAGAG 57.499 39.130 0.00 0.00 0.00 3.20
156 157 5.650703 AGAAAGAAAAGAACCAAAACCGAGA 59.349 36.000 0.00 0.00 0.00 4.04
157 158 5.891451 AGAAAGAAAAGAACCAAAACCGAG 58.109 37.500 0.00 0.00 0.00 4.63
158 159 5.650703 AGAGAAAGAAAAGAACCAAAACCGA 59.349 36.000 0.00 0.00 0.00 4.69
159 160 5.891451 AGAGAAAGAAAAGAACCAAAACCG 58.109 37.500 0.00 0.00 0.00 4.44
160 161 6.863275 TGAGAGAAAGAAAAGAACCAAAACC 58.137 36.000 0.00 0.00 0.00 3.27
161 162 8.648097 GTTTGAGAGAAAGAAAAGAACCAAAAC 58.352 33.333 0.00 0.00 0.00 2.43
162 163 8.585018 AGTTTGAGAGAAAGAAAAGAACCAAAA 58.415 29.630 0.00 0.00 0.00 2.44
163 164 8.122472 AGTTTGAGAGAAAGAAAAGAACCAAA 57.878 30.769 0.00 0.00 0.00 3.28
164 165 7.703058 AGTTTGAGAGAAAGAAAAGAACCAA 57.297 32.000 0.00 0.00 0.00 3.67
165 166 7.703058 AAGTTTGAGAGAAAGAAAAGAACCA 57.297 32.000 0.00 0.00 0.00 3.67
166 167 8.988064 AAAAGTTTGAGAGAAAGAAAAGAACC 57.012 30.769 0.00 0.00 0.00 3.62
167 168 8.789743 CGAAAAGTTTGAGAGAAAGAAAAGAAC 58.210 33.333 0.00 0.00 0.00 3.01
168 169 8.726988 TCGAAAAGTTTGAGAGAAAGAAAAGAA 58.273 29.630 0.00 0.00 0.00 2.52
169 170 8.263940 TCGAAAAGTTTGAGAGAAAGAAAAGA 57.736 30.769 0.00 0.00 0.00 2.52
170 171 8.895932 TTCGAAAAGTTTGAGAGAAAGAAAAG 57.104 30.769 0.00 0.00 0.00 2.27
171 172 9.855021 ATTTCGAAAAGTTTGAGAGAAAGAAAA 57.145 25.926 15.66 0.00 31.08 2.29
172 173 9.855021 AATTTCGAAAAGTTTGAGAGAAAGAAA 57.145 25.926 15.66 0.00 31.08 2.52
173 174 9.289303 CAATTTCGAAAAGTTTGAGAGAAAGAA 57.711 29.630 15.66 0.00 31.08 2.52
174 175 7.915397 CCAATTTCGAAAAGTTTGAGAGAAAGA 59.085 33.333 15.66 0.00 31.08 2.52
175 176 7.702348 ACCAATTTCGAAAAGTTTGAGAGAAAG 59.298 33.333 15.66 3.59 31.08 2.62
176 177 7.543756 ACCAATTTCGAAAAGTTTGAGAGAAA 58.456 30.769 15.66 9.11 0.00 2.52
177 178 7.095695 ACCAATTTCGAAAAGTTTGAGAGAA 57.904 32.000 15.66 0.00 0.00 2.87
178 179 6.693315 ACCAATTTCGAAAAGTTTGAGAGA 57.307 33.333 15.66 0.00 0.00 3.10
179 180 6.751888 ACAACCAATTTCGAAAAGTTTGAGAG 59.248 34.615 21.90 13.99 0.00 3.20
180 181 6.529829 CACAACCAATTTCGAAAAGTTTGAGA 59.470 34.615 21.90 0.00 0.00 3.27
181 182 6.310224 ACACAACCAATTTCGAAAAGTTTGAG 59.690 34.615 21.90 18.09 0.00 3.02
182 183 6.090088 CACACAACCAATTTCGAAAAGTTTGA 59.910 34.615 21.90 0.00 0.00 2.69
183 184 6.239945 CACACAACCAATTTCGAAAAGTTTG 58.760 36.000 15.66 16.35 0.00 2.93
184 185 5.163903 GCACACAACCAATTTCGAAAAGTTT 60.164 36.000 15.66 1.74 0.00 2.66
185 186 4.328712 GCACACAACCAATTTCGAAAAGTT 59.671 37.500 15.66 15.15 0.00 2.66
186 187 3.862845 GCACACAACCAATTTCGAAAAGT 59.137 39.130 15.66 9.98 0.00 2.66
187 188 3.862267 TGCACACAACCAATTTCGAAAAG 59.138 39.130 15.66 10.45 0.00 2.27
188 189 3.849911 TGCACACAACCAATTTCGAAAA 58.150 36.364 15.66 0.00 0.00 2.29
189 190 3.510388 TGCACACAACCAATTTCGAAA 57.490 38.095 13.91 13.91 0.00 3.46
190 191 3.724508 ATGCACACAACCAATTTCGAA 57.275 38.095 0.00 0.00 0.00 3.71
191 192 3.724508 AATGCACACAACCAATTTCGA 57.275 38.095 0.00 0.00 0.00 3.71
192 193 3.555139 ACAAATGCACACAACCAATTTCG 59.445 39.130 0.00 0.00 0.00 3.46
193 194 5.482686 AACAAATGCACACAACCAATTTC 57.517 34.783 0.00 0.00 0.00 2.17
194 195 6.513066 GCATAACAAATGCACACAACCAATTT 60.513 34.615 5.14 0.00 44.00 1.82
195 196 5.049543 GCATAACAAATGCACACAACCAATT 60.050 36.000 5.14 0.00 44.00 2.32
196 197 4.451774 GCATAACAAATGCACACAACCAAT 59.548 37.500 5.14 0.00 44.00 3.16
197 198 3.806521 GCATAACAAATGCACACAACCAA 59.193 39.130 5.14 0.00 44.00 3.67
198 199 3.388308 GCATAACAAATGCACACAACCA 58.612 40.909 5.14 0.00 44.00 3.67
207 208 1.534595 CGGCCTCTGCATAACAAATGC 60.535 52.381 0.00 3.05 44.76 3.56
208 209 1.066002 CCGGCCTCTGCATAACAAATG 59.934 52.381 0.00 0.00 40.13 2.32
209 210 1.392589 CCGGCCTCTGCATAACAAAT 58.607 50.000 0.00 0.00 40.13 2.32
210 211 0.679640 CCCGGCCTCTGCATAACAAA 60.680 55.000 0.00 0.00 40.13 2.83
211 212 1.077787 CCCGGCCTCTGCATAACAA 60.078 57.895 0.00 0.00 40.13 2.83
212 213 2.297895 ACCCGGCCTCTGCATAACA 61.298 57.895 0.00 0.00 40.13 2.41
213 214 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
214 215 1.847798 AACACCCGGCCTCTGCATAA 61.848 55.000 0.00 0.00 40.13 1.90
215 216 0.978667 TAACACCCGGCCTCTGCATA 60.979 55.000 0.00 0.00 40.13 3.14
216 217 2.297895 TAACACCCGGCCTCTGCAT 61.298 57.895 0.00 0.00 40.13 3.96
217 218 2.925706 TAACACCCGGCCTCTGCA 60.926 61.111 0.00 0.00 40.13 4.41
218 219 2.436115 GTAACACCCGGCCTCTGC 60.436 66.667 0.00 0.00 0.00 4.26
219 220 1.218316 GAGTAACACCCGGCCTCTG 59.782 63.158 0.00 0.00 0.00 3.35
220 221 0.617820 ATGAGTAACACCCGGCCTCT 60.618 55.000 0.00 0.00 0.00 3.69
221 222 1.117150 TATGAGTAACACCCGGCCTC 58.883 55.000 0.00 0.00 0.00 4.70
222 223 1.575419 TTATGAGTAACACCCGGCCT 58.425 50.000 0.00 0.00 0.00 5.19
223 224 2.218603 CATTATGAGTAACACCCGGCC 58.781 52.381 0.00 0.00 0.00 6.13
224 225 1.602377 GCATTATGAGTAACACCCGGC 59.398 52.381 0.00 0.00 0.00 6.13
225 226 3.194005 AGCATTATGAGTAACACCCGG 57.806 47.619 0.00 0.00 0.00 5.73
226 227 4.394920 ACAAAGCATTATGAGTAACACCCG 59.605 41.667 0.00 0.00 0.00 5.28
227 228 5.897377 ACAAAGCATTATGAGTAACACCC 57.103 39.130 0.00 0.00 0.00 4.61
228 229 7.518370 CGGATACAAAGCATTATGAGTAACACC 60.518 40.741 0.00 0.00 0.00 4.16
229 230 7.011109 ACGGATACAAAGCATTATGAGTAACAC 59.989 37.037 0.00 0.00 0.00 3.32
230 231 7.045416 ACGGATACAAAGCATTATGAGTAACA 58.955 34.615 0.00 0.00 0.00 2.41
231 232 7.478520 ACGGATACAAAGCATTATGAGTAAC 57.521 36.000 0.00 0.00 0.00 2.50
232 233 8.394877 CAAACGGATACAAAGCATTATGAGTAA 58.605 33.333 0.00 0.00 0.00 2.24
233 234 7.766738 TCAAACGGATACAAAGCATTATGAGTA 59.233 33.333 0.00 0.00 0.00 2.59
234 235 6.597672 TCAAACGGATACAAAGCATTATGAGT 59.402 34.615 0.00 0.00 0.00 3.41
235 236 7.015226 TCAAACGGATACAAAGCATTATGAG 57.985 36.000 0.00 0.00 0.00 2.90
236 237 6.993786 TCAAACGGATACAAAGCATTATGA 57.006 33.333 0.00 0.00 0.00 2.15
237 238 6.142798 GCATCAAACGGATACAAAGCATTATG 59.857 38.462 0.00 0.00 33.95 1.90
238 239 6.039717 AGCATCAAACGGATACAAAGCATTAT 59.960 34.615 0.00 0.00 33.95 1.28
239 240 5.356751 AGCATCAAACGGATACAAAGCATTA 59.643 36.000 0.00 0.00 33.95 1.90
240 241 4.158394 AGCATCAAACGGATACAAAGCATT 59.842 37.500 0.00 0.00 33.95 3.56
241 242 3.696051 AGCATCAAACGGATACAAAGCAT 59.304 39.130 0.00 0.00 33.95 3.79
242 243 3.081061 AGCATCAAACGGATACAAAGCA 58.919 40.909 0.00 0.00 33.95 3.91
243 244 3.764885 AGCATCAAACGGATACAAAGC 57.235 42.857 0.00 0.00 33.95 3.51
270 271 9.607285 CGATGCGCTTTTATTACCTAAAAATAT 57.393 29.630 9.73 0.00 38.51 1.28
271 272 8.828644 TCGATGCGCTTTTATTACCTAAAAATA 58.171 29.630 9.73 0.00 38.51 1.40
272 273 7.699566 TCGATGCGCTTTTATTACCTAAAAAT 58.300 30.769 9.73 0.00 38.51 1.82
273 274 7.064847 TCTCGATGCGCTTTTATTACCTAAAAA 59.935 33.333 9.73 0.00 38.51 1.94
274 275 6.535865 TCTCGATGCGCTTTTATTACCTAAAA 59.464 34.615 9.73 0.00 37.05 1.52
275 276 6.044046 TCTCGATGCGCTTTTATTACCTAAA 58.956 36.000 9.73 0.00 0.00 1.85
276 277 5.593968 TCTCGATGCGCTTTTATTACCTAA 58.406 37.500 9.73 0.00 0.00 2.69
277 278 5.190992 TCTCGATGCGCTTTTATTACCTA 57.809 39.130 9.73 0.00 0.00 3.08
278 279 4.054780 TCTCGATGCGCTTTTATTACCT 57.945 40.909 9.73 0.00 0.00 3.08
279 280 4.789095 TTCTCGATGCGCTTTTATTACC 57.211 40.909 9.73 0.00 0.00 2.85
300 301 3.807553 CTGGTTTGGCTGTGGAATTTTT 58.192 40.909 0.00 0.00 0.00 1.94
301 302 2.485302 GCTGGTTTGGCTGTGGAATTTT 60.485 45.455 0.00 0.00 0.00 1.82
302 303 1.070601 GCTGGTTTGGCTGTGGAATTT 59.929 47.619 0.00 0.00 0.00 1.82
303 304 0.681175 GCTGGTTTGGCTGTGGAATT 59.319 50.000 0.00 0.00 0.00 2.17
304 305 0.469705 TGCTGGTTTGGCTGTGGAAT 60.470 50.000 0.00 0.00 0.00 3.01
305 306 1.076412 TGCTGGTTTGGCTGTGGAA 60.076 52.632 0.00 0.00 0.00 3.53
306 307 1.827789 GTGCTGGTTTGGCTGTGGA 60.828 57.895 0.00 0.00 0.00 4.02
307 308 2.126596 TGTGCTGGTTTGGCTGTGG 61.127 57.895 0.00 0.00 0.00 4.17
308 309 1.066257 GTGTGCTGGTTTGGCTGTG 59.934 57.895 0.00 0.00 0.00 3.66
309 310 1.076777 AGTGTGCTGGTTTGGCTGT 60.077 52.632 0.00 0.00 0.00 4.40
310 311 1.656441 GAGTGTGCTGGTTTGGCTG 59.344 57.895 0.00 0.00 0.00 4.85
311 312 1.893808 CGAGTGTGCTGGTTTGGCT 60.894 57.895 0.00 0.00 0.00 4.75
312 313 2.639286 CGAGTGTGCTGGTTTGGC 59.361 61.111 0.00 0.00 0.00 4.52
327 328 1.600413 CGATTGATGTGCTCGATCCGA 60.600 52.381 0.00 0.00 40.46 4.55
331 332 2.584492 TGTCGATTGATGTGCTCGAT 57.416 45.000 0.00 0.00 42.65 3.59
332 333 2.584492 ATGTCGATTGATGTGCTCGA 57.416 45.000 0.00 0.00 38.95 4.04
336 337 5.237127 TGGAGAAATATGTCGATTGATGTGC 59.763 40.000 0.00 0.00 0.00 4.57
342 343 6.609237 ATGTGTGGAGAAATATGTCGATTG 57.391 37.500 0.00 0.00 0.00 2.67
343 344 7.465916 CGAAATGTGTGGAGAAATATGTCGATT 60.466 37.037 0.00 0.00 0.00 3.34
393 394 1.741706 GTCAGCCACCATGATTGAGTG 59.258 52.381 0.00 0.00 0.00 3.51
394 395 1.632409 AGTCAGCCACCATGATTGAGT 59.368 47.619 0.00 0.00 0.00 3.41
395 396 2.286872 GAGTCAGCCACCATGATTGAG 58.713 52.381 0.00 0.00 0.00 3.02
396 397 1.629861 TGAGTCAGCCACCATGATTGA 59.370 47.619 0.00 0.00 0.00 2.57
407 408 2.988010 TGTGGTCATATGAGTCAGCC 57.012 50.000 5.42 3.97 0.00 4.85
408 409 3.136763 CCATGTGGTCATATGAGTCAGC 58.863 50.000 5.42 0.00 32.49 4.26
409 410 4.677673 TCCATGTGGTCATATGAGTCAG 57.322 45.455 5.42 0.00 32.49 3.51
410 411 5.434182 TTTCCATGTGGTCATATGAGTCA 57.566 39.130 5.42 5.15 32.49 3.41
412 413 5.195940 CCTTTTCCATGTGGTCATATGAGT 58.804 41.667 5.42 0.00 32.49 3.41
413 414 4.037208 GCCTTTTCCATGTGGTCATATGAG 59.963 45.833 5.42 0.00 32.49 2.90
418 422 1.895131 GTGCCTTTTCCATGTGGTCAT 59.105 47.619 0.00 0.00 36.34 3.06
424 428 1.165270 GTAGCGTGCCTTTTCCATGT 58.835 50.000 0.00 0.00 0.00 3.21
425 429 0.096976 CGTAGCGTGCCTTTTCCATG 59.903 55.000 0.00 0.00 0.00 3.66
441 445 3.061563 CGATTCTTTTCGCCATGTTCGTA 59.938 43.478 4.83 0.00 31.60 3.43
448 452 0.451783 GTGCCGATTCTTTTCGCCAT 59.548 50.000 0.00 0.00 37.80 4.40
454 458 0.676782 CCTCCCGTGCCGATTCTTTT 60.677 55.000 0.00 0.00 0.00 2.27
455 459 1.078426 CCTCCCGTGCCGATTCTTT 60.078 57.895 0.00 0.00 0.00 2.52
463 467 2.893398 CTAGTGTCCTCCCGTGCC 59.107 66.667 0.00 0.00 0.00 5.01
464 468 2.184579 GCTAGTGTCCTCCCGTGC 59.815 66.667 0.00 0.00 0.00 5.34
530 534 5.220892 GGTGTTATTTTTCAGTGAACCGTGA 60.221 40.000 4.68 0.00 0.00 4.35
548 552 4.008330 TCGGCGAAAATAATTGGGTGTTA 58.992 39.130 7.35 0.00 0.00 2.41
549 553 2.820787 TCGGCGAAAATAATTGGGTGTT 59.179 40.909 7.35 0.00 0.00 3.32
550 554 2.438411 TCGGCGAAAATAATTGGGTGT 58.562 42.857 7.35 0.00 0.00 4.16
578 2591 7.714813 ACTTTTCATTTTTCCTTTACATGGGTG 59.285 33.333 0.00 0.00 0.00 4.61
579 2592 7.801104 ACTTTTCATTTTTCCTTTACATGGGT 58.199 30.769 0.00 0.00 0.00 4.51
580 2593 7.387673 GGACTTTTCATTTTTCCTTTACATGGG 59.612 37.037 0.00 0.00 0.00 4.00
581 2594 7.116233 CGGACTTTTCATTTTTCCTTTACATGG 59.884 37.037 0.00 0.00 0.00 3.66
582 2595 7.116233 CCGGACTTTTCATTTTTCCTTTACATG 59.884 37.037 0.00 0.00 0.00 3.21
583 2596 7.151976 CCGGACTTTTCATTTTTCCTTTACAT 58.848 34.615 0.00 0.00 0.00 2.29
584 2597 6.461788 CCCGGACTTTTCATTTTTCCTTTACA 60.462 38.462 0.73 0.00 0.00 2.41
585 2598 5.924254 CCCGGACTTTTCATTTTTCCTTTAC 59.076 40.000 0.73 0.00 0.00 2.01
586 2599 5.834204 TCCCGGACTTTTCATTTTTCCTTTA 59.166 36.000 0.73 0.00 0.00 1.85
587 2600 4.651962 TCCCGGACTTTTCATTTTTCCTTT 59.348 37.500 0.73 0.00 0.00 3.11
588 2601 4.219919 TCCCGGACTTTTCATTTTTCCTT 58.780 39.130 0.73 0.00 0.00 3.36
590 2603 4.556233 CTTCCCGGACTTTTCATTTTTCC 58.444 43.478 0.73 0.00 0.00 3.13
592 2605 3.244078 GCCTTCCCGGACTTTTCATTTTT 60.244 43.478 0.73 0.00 33.16 1.94
597 2610 1.302192 CGCCTTCCCGGACTTTTCA 60.302 57.895 0.73 0.00 33.16 2.69
608 2621 4.802051 TGCCATCCAGCGCCTTCC 62.802 66.667 2.29 0.00 34.65 3.46
774 2795 3.420482 AAAGGGGGCGGAGATGGG 61.420 66.667 0.00 0.00 0.00 4.00
776 2797 1.147153 GAGAAAGGGGGCGGAGATG 59.853 63.158 0.00 0.00 0.00 2.90
777 2798 1.003573 AGAGAAAGGGGGCGGAGAT 59.996 57.895 0.00 0.00 0.00 2.75
778 2799 1.686110 GAGAGAAAGGGGGCGGAGA 60.686 63.158 0.00 0.00 0.00 3.71
780 2801 1.686110 GAGAGAGAAAGGGGGCGGA 60.686 63.158 0.00 0.00 0.00 5.54
782 2803 1.486211 TTAGAGAGAGAAAGGGGGCG 58.514 55.000 0.00 0.00 0.00 6.13
783 2804 3.456277 TGATTTAGAGAGAGAAAGGGGGC 59.544 47.826 0.00 0.00 0.00 5.80
830 2863 3.542825 GAGGAGAACTCGATCTGCG 57.457 57.895 2.39 0.00 42.06 5.18
866 2899 7.348274 TGGCTTGATAAGATATTATCTAGGGGG 59.652 40.741 23.66 8.18 39.08 5.40
892 2940 3.626924 AGCCCTGCCGTCGTTCTT 61.627 61.111 0.00 0.00 0.00 2.52
1183 3249 4.127171 ACCCAGCTTAATAACGTGCTATG 58.873 43.478 0.00 0.00 34.10 2.23
1342 3408 8.821894 CCATGCAGTTACTTCTAAGTTCTAATC 58.178 37.037 0.00 0.00 40.37 1.75
1343 3409 8.322091 ACCATGCAGTTACTTCTAAGTTCTAAT 58.678 33.333 0.00 0.00 40.37 1.73
1377 3443 0.669318 TCATCGACAAACACCTCGGC 60.669 55.000 0.00 0.00 0.00 5.54
1383 3449 4.201532 CGTCAAGAGATCATCGACAAACAC 60.202 45.833 0.00 0.00 0.00 3.32
1568 3635 1.276421 AGTCAGACGCTGGCTACAATT 59.724 47.619 11.45 0.00 45.22 2.32
1569 3636 0.898320 AGTCAGACGCTGGCTACAAT 59.102 50.000 11.45 0.00 45.22 2.71
1578 3646 1.433053 CCGATCGAGAGTCAGACGCT 61.433 60.000 18.66 6.50 0.00 5.07
1822 3895 1.767759 AGTTGTTTGCTGCTTGTCCT 58.232 45.000 0.00 0.00 0.00 3.85
1833 3906 2.032030 CACCTACCGAGCAAGTTGTTTG 60.032 50.000 4.48 2.11 39.88 2.93
1834 3907 2.218603 CACCTACCGAGCAAGTTGTTT 58.781 47.619 4.48 0.00 0.00 2.83
1961 4056 1.267806 CTGAAGCACCAACCATGTCAC 59.732 52.381 0.00 0.00 0.00 3.67
1962 4057 1.608055 CTGAAGCACCAACCATGTCA 58.392 50.000 0.00 0.00 0.00 3.58
1963 4058 0.242017 GCTGAAGCACCAACCATGTC 59.758 55.000 0.00 0.00 41.59 3.06
1964 4059 0.178981 AGCTGAAGCACCAACCATGT 60.179 50.000 4.90 0.00 45.16 3.21
1965 4060 1.825090 TAGCTGAAGCACCAACCATG 58.175 50.000 4.90 0.00 45.16 3.66
1966 4061 2.040278 TCTTAGCTGAAGCACCAACCAT 59.960 45.455 4.90 0.00 45.16 3.55
1967 4062 1.419762 TCTTAGCTGAAGCACCAACCA 59.580 47.619 4.90 0.00 45.16 3.67
1968 4063 2.185004 TCTTAGCTGAAGCACCAACC 57.815 50.000 4.90 0.00 45.16 3.77
1969 4064 2.349886 CGATCTTAGCTGAAGCACCAAC 59.650 50.000 4.90 0.00 45.16 3.77
1970 4065 2.233676 TCGATCTTAGCTGAAGCACCAA 59.766 45.455 4.90 0.00 45.16 3.67
1971 4066 1.824852 TCGATCTTAGCTGAAGCACCA 59.175 47.619 4.90 0.00 45.16 4.17
1972 4067 2.197577 GTCGATCTTAGCTGAAGCACC 58.802 52.381 4.90 0.00 45.16 5.01
1973 4068 1.849219 CGTCGATCTTAGCTGAAGCAC 59.151 52.381 4.90 0.00 45.16 4.40
1974 4069 1.743394 TCGTCGATCTTAGCTGAAGCA 59.257 47.619 4.90 0.00 45.16 3.91
1975 4070 2.476873 TCGTCGATCTTAGCTGAAGC 57.523 50.000 0.00 0.00 42.49 3.86
1976 4071 3.304257 CCATCGTCGATCTTAGCTGAAG 58.696 50.000 4.34 0.00 36.38 3.02
1977 4072 2.543861 GCCATCGTCGATCTTAGCTGAA 60.544 50.000 4.34 0.00 0.00 3.02
1978 4073 1.001268 GCCATCGTCGATCTTAGCTGA 60.001 52.381 4.34 0.00 0.00 4.26
1979 4074 1.413382 GCCATCGTCGATCTTAGCTG 58.587 55.000 4.34 0.00 0.00 4.24
1980 4075 0.039978 CGCCATCGTCGATCTTAGCT 60.040 55.000 4.34 0.00 0.00 3.32
1981 4076 1.609840 GCGCCATCGTCGATCTTAGC 61.610 60.000 4.34 5.36 38.14 3.09
1982 4077 1.004277 GGCGCCATCGTCGATCTTAG 61.004 60.000 24.80 0.00 38.14 2.18
2063 4166 4.641396 AGACGAACCAACTCATCAATCAA 58.359 39.130 0.00 0.00 0.00 2.57
2064 4167 4.271696 AGACGAACCAACTCATCAATCA 57.728 40.909 0.00 0.00 0.00 2.57
2065 4168 5.385617 CAAAGACGAACCAACTCATCAATC 58.614 41.667 0.00 0.00 0.00 2.67
2066 4169 4.320494 GCAAAGACGAACCAACTCATCAAT 60.320 41.667 0.00 0.00 0.00 2.57
2086 4189 1.885887 GATGTGTAGGCAAACTGGCAA 59.114 47.619 2.87 0.00 46.46 4.52
2087 4190 1.202867 TGATGTGTAGGCAAACTGGCA 60.203 47.619 2.87 0.00 46.46 4.92
2088 4191 1.533625 TGATGTGTAGGCAAACTGGC 58.466 50.000 0.00 0.00 44.10 4.85
2089 4192 3.084039 ACATGATGTGTAGGCAAACTGG 58.916 45.455 0.00 0.00 39.91 4.00
2090 4193 4.087510 CACATGATGTGTAGGCAAACTG 57.912 45.455 17.08 0.00 43.08 3.16
2134 4244 8.080417 ACAGTGTATAGTACTACCAATTATGCG 58.920 37.037 4.31 0.00 0.00 4.73
2211 4324 9.951866 ACTGATCTATAAATTACCCCCAAAATT 57.048 29.630 0.00 0.00 0.00 1.82
2307 4420 0.795698 CGTCGCCATCACATCAACAA 59.204 50.000 0.00 0.00 0.00 2.83
2333 4447 1.836999 AACCGGCTGCCATACACTCA 61.837 55.000 20.29 0.00 0.00 3.41
2341 4455 3.390521 AGATCGAACCGGCTGCCA 61.391 61.111 20.29 0.00 0.00 4.92
2345 4459 1.522355 CATGCAGATCGAACCGGCT 60.522 57.895 0.00 0.00 0.00 5.52
2363 4479 9.659830 CAGTGTTTACAAAACTAATCACCTTAC 57.340 33.333 4.35 0.00 31.02 2.34
2367 4483 6.735130 AGCAGTGTTTACAAAACTAATCACC 58.265 36.000 4.35 0.00 31.02 4.02
2389 4505 3.748568 ACTTGTCTAAGCTAAGCACAAGC 59.251 43.478 19.88 2.82 45.20 4.01
2391 4507 5.932303 CCTTACTTGTCTAAGCTAAGCACAA 59.068 40.000 0.00 0.00 37.43 3.33
2406 4522 5.128171 TGGTTCATATAGCGACCTTACTTGT 59.872 40.000 0.00 0.00 33.33 3.16
2407 4523 5.597806 TGGTTCATATAGCGACCTTACTTG 58.402 41.667 0.00 0.00 33.33 3.16
2408 4524 5.864418 TGGTTCATATAGCGACCTTACTT 57.136 39.130 0.00 0.00 33.33 2.24
2409 4525 5.452917 GGTTGGTTCATATAGCGACCTTACT 60.453 44.000 6.80 0.00 43.65 2.24
2410 4526 4.748600 GGTTGGTTCATATAGCGACCTTAC 59.251 45.833 6.80 2.22 43.65 2.34
2411 4527 4.952460 GGTTGGTTCATATAGCGACCTTA 58.048 43.478 6.80 0.00 43.65 2.69
2413 4529 3.470645 GGTTGGTTCATATAGCGACCT 57.529 47.619 6.80 0.00 43.65 3.85
2414 4530 3.470645 AGGTTGGTTCATATAGCGACC 57.529 47.619 6.11 6.11 46.14 4.79
2416 4532 5.147330 CCATAGGTTGGTTCATATAGCGA 57.853 43.478 0.00 0.00 40.99 4.93
2431 4547 5.399038 CCCATCTAACCATTCAACCATAGGT 60.399 44.000 0.00 0.00 37.65 3.08
2432 4548 5.072741 CCCATCTAACCATTCAACCATAGG 58.927 45.833 0.00 0.00 0.00 2.57
2434 4550 4.079500 TGCCCATCTAACCATTCAACCATA 60.080 41.667 0.00 0.00 0.00 2.74
2435 4551 3.299503 GCCCATCTAACCATTCAACCAT 58.700 45.455 0.00 0.00 0.00 3.55
2438 4558 3.129287 CACTGCCCATCTAACCATTCAAC 59.871 47.826 0.00 0.00 0.00 3.18
2442 4562 1.640670 ACCACTGCCCATCTAACCATT 59.359 47.619 0.00 0.00 0.00 3.16
2451 4571 2.158608 GGCTAAAGATACCACTGCCCAT 60.159 50.000 0.00 0.00 33.45 4.00
2454 4574 1.211949 TGGGCTAAAGATACCACTGCC 59.788 52.381 0.00 0.00 38.28 4.85
2455 4575 2.710096 TGGGCTAAAGATACCACTGC 57.290 50.000 0.00 0.00 0.00 4.40
2456 4576 4.384056 CTGATGGGCTAAAGATACCACTG 58.616 47.826 0.00 0.00 35.52 3.66
2478 4598 1.075536 AGGTCACCAGGATTTGAACCC 59.924 52.381 0.00 0.00 28.82 4.11
2486 4606 1.630878 GTGGAAGAAGGTCACCAGGAT 59.369 52.381 0.00 0.00 32.89 3.24
2488 4608 3.633361 GTGGAAGAAGGTCACCAGG 57.367 57.895 0.00 0.00 32.89 4.45
2492 4612 1.726853 CGATGGTGGAAGAAGGTCAC 58.273 55.000 0.00 0.00 0.00 3.67
2499 8405 2.268920 GCTGGCGATGGTGGAAGA 59.731 61.111 0.00 0.00 0.00 2.87
2564 8470 1.734655 ATGTGAAGTGTGGGAGGTCT 58.265 50.000 0.00 0.00 0.00 3.85
2611 8517 6.000840 TGCTCACAGATACTAGTCTCCATAG 58.999 44.000 0.00 0.00 0.00 2.23
2620 8526 5.851720 ACATTGGATGCTCACAGATACTAG 58.148 41.667 0.00 0.00 0.00 2.57
2621 8527 5.507985 CGACATTGGATGCTCACAGATACTA 60.508 44.000 0.00 0.00 0.00 1.82
2652 8558 0.935898 CATTGCTAGAAGCCTCGCAG 59.064 55.000 0.00 0.00 41.28 5.18
2693 8599 2.159099 CGGCAACACTCCTAAGCATCTA 60.159 50.000 0.00 0.00 0.00 1.98
2711 8617 1.376609 CCACCTCCAATGCTTACGGC 61.377 60.000 0.00 0.00 42.22 5.68
2712 8618 0.251916 TCCACCTCCAATGCTTACGG 59.748 55.000 0.00 0.00 0.00 4.02
2727 8633 0.968405 TTGCAGGGCAATTCTTCCAC 59.032 50.000 0.00 0.00 43.99 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.