Multiple sequence alignment - TraesCS4A01G269300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G269300 chr4A 100.000 3065 0 0 1 3065 581202286 581199222 0.000000e+00 5661
1 TraesCS4A01G269300 chr4D 88.046 2518 140 63 616 3065 20436126 20433702 0.000000e+00 2833
2 TraesCS4A01G269300 chr4D 89.064 1399 69 41 621 1997 20081446 20082782 0.000000e+00 1659
3 TraesCS4A01G269300 chr4D 88.785 214 21 1 1 214 20080823 20081033 3.030000e-65 259
4 TraesCS4A01G269300 chr4D 85.600 125 9 3 2032 2155 20083233 20083349 4.150000e-24 122
5 TraesCS4A01G269300 chr4D 77.447 235 28 15 335 557 20436454 20436233 1.930000e-22 117
6 TraesCS4A01G269300 chr4B 90.711 2110 123 29 974 3063 32424959 32422903 0.000000e+00 2743
7 TraesCS4A01G269300 chr4B 86.901 1252 82 31 802 2036 32277965 32279151 0.000000e+00 1328
8 TraesCS4A01G269300 chr4B 86.408 103 7 5 153 248 32425671 32425569 4.180000e-19 106
9 TraesCS4A01G269300 chr5A 82.309 537 41 18 2174 2668 491372049 491372573 1.700000e-112 416
10 TraesCS4A01G269300 chr5A 83.152 184 18 8 2179 2359 491525530 491525703 4.090000e-34 156
11 TraesCS4A01G269300 chr5D 86.517 267 15 7 2418 2668 388590956 388591217 1.080000e-69 274
12 TraesCS4A01G269300 chr5D 91.209 182 12 1 2487 2668 388335292 388335469 8.490000e-61 244
13 TraesCS4A01G269300 chr6D 86.415 265 17 6 2418 2667 106895720 106895980 3.890000e-69 272
14 TraesCS4A01G269300 chr2B 87.963 216 19 6 1 211 62344064 62344277 6.560000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G269300 chr4A 581199222 581202286 3064 True 5661.0 5661 100.000000 1 3065 1 chr4A.!!$R1 3064
1 TraesCS4A01G269300 chr4D 20433702 20436454 2752 True 1475.0 2833 82.746500 335 3065 2 chr4D.!!$R1 2730
2 TraesCS4A01G269300 chr4D 20080823 20083349 2526 False 680.0 1659 87.816333 1 2155 3 chr4D.!!$F1 2154
3 TraesCS4A01G269300 chr4B 32422903 32425671 2768 True 1424.5 2743 88.559500 153 3063 2 chr4B.!!$R1 2910
4 TraesCS4A01G269300 chr4B 32277965 32279151 1186 False 1328.0 1328 86.901000 802 2036 1 chr4B.!!$F1 1234
5 TraesCS4A01G269300 chr5A 491372049 491372573 524 False 416.0 416 82.309000 2174 2668 1 chr5A.!!$F1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.029567 TTTGGTTGTTGTTAGCCGCG 59.970 50.0 0.0 0.0 0.0 6.46 F
951 1217 0.036010 CATCCTCCAAACCGTCAGCT 60.036 55.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2258 0.673437 CTTCTCCGGCAGATCCTCTC 59.327 60.0 0.0 0.0 0.0 3.20 R
2695 3475 0.249868 TGTTCTCACCGCCTCTTGTG 60.250 55.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 7.126726 TGCCATACTTTGAACCCTACTAGTAAT 59.873 37.037 3.76 0.00 0.00 1.89
96 97 7.060518 CGTTTGAAATGAGAATACGATTTGCAA 59.939 33.333 0.00 0.00 0.00 4.08
102 103 7.849804 ATGAGAATACGATTTGCAACTACTT 57.150 32.000 0.00 0.00 0.00 2.24
112 113 6.360681 CGATTTGCAACTACTTTTCTTTCCTG 59.639 38.462 0.00 0.00 0.00 3.86
125 126 8.470002 ACTTTTCTTTCCTGAAATATATGGCAC 58.530 33.333 0.00 0.00 36.07 5.01
143 144 2.926838 GCACGACATTTTGGTTGTTGTT 59.073 40.909 0.00 0.00 39.21 2.83
147 148 3.733727 CGACATTTTGGTTGTTGTTAGCC 59.266 43.478 0.00 0.00 0.00 3.93
150 151 0.029567 TTTGGTTGTTGTTAGCCGCG 59.970 50.000 0.00 0.00 0.00 6.46
199 201 2.029649 ACACAAGACAAAGATGCATGCC 60.030 45.455 16.68 0.00 0.00 4.40
200 202 1.547372 ACAAGACAAAGATGCATGCCC 59.453 47.619 16.68 7.18 0.00 5.36
260 322 4.446413 GTCGGCGTCGGTCCCAAT 62.446 66.667 10.62 0.00 36.95 3.16
261 323 4.137872 TCGGCGTCGGTCCCAATC 62.138 66.667 10.62 0.00 36.95 2.67
262 324 4.143333 CGGCGTCGGTCCCAATCT 62.143 66.667 0.00 0.00 0.00 2.40
274 336 3.323979 GGTCCCAATCTATCTAGGCGAAA 59.676 47.826 0.00 0.00 0.00 3.46
288 350 3.909137 CGAAACGTTCTTCGCTCAG 57.091 52.632 9.23 0.00 41.46 3.35
301 374 1.717937 GCTCAGGCATAACAGCACG 59.282 57.895 0.00 0.00 38.54 5.34
304 377 0.391130 TCAGGCATAACAGCACGGAC 60.391 55.000 0.00 0.00 35.83 4.79
312 385 0.532862 AACAGCACGGACCAAGACAG 60.533 55.000 0.00 0.00 0.00 3.51
314 387 1.069765 AGCACGGACCAAGACAGTG 59.930 57.895 0.00 0.00 36.75 3.66
315 388 3.642755 CACGGACCAAGACAGTGC 58.357 61.111 0.00 0.00 0.00 4.40
316 389 1.069765 CACGGACCAAGACAGTGCT 59.930 57.895 0.00 0.00 0.00 4.40
317 390 1.069765 ACGGACCAAGACAGTGCTG 59.930 57.895 0.00 0.00 0.00 4.41
321 420 0.179045 GACCAAGACAGTGCTGTGGT 60.179 55.000 9.80 10.66 45.05 4.16
364 509 3.435327 CAGCAGCAAATGATGTGCAAAAT 59.565 39.130 10.66 0.00 44.74 1.82
369 514 4.693566 AGCAAATGATGTGCAAAATCCTTG 59.306 37.500 10.66 11.03 44.74 3.61
370 515 4.691685 GCAAATGATGTGCAAAATCCTTGA 59.308 37.500 17.88 1.17 41.80 3.02
371 516 5.390145 GCAAATGATGTGCAAAATCCTTGAC 60.390 40.000 17.88 10.55 41.80 3.18
372 517 3.557577 TGATGTGCAAAATCCTTGACG 57.442 42.857 7.90 0.00 25.63 4.35
373 518 2.228582 TGATGTGCAAAATCCTTGACGG 59.771 45.455 7.90 0.00 25.63 4.79
375 520 1.606668 TGTGCAAAATCCTTGACGGAC 59.393 47.619 0.00 0.00 46.80 4.79
376 521 1.880027 GTGCAAAATCCTTGACGGACT 59.120 47.619 0.00 0.00 46.80 3.85
377 522 2.095718 GTGCAAAATCCTTGACGGACTC 60.096 50.000 0.00 0.00 46.80 3.36
378 523 2.224523 TGCAAAATCCTTGACGGACTCT 60.225 45.455 0.00 0.00 46.80 3.24
379 524 3.007506 TGCAAAATCCTTGACGGACTCTA 59.992 43.478 0.00 0.00 46.80 2.43
380 525 3.371285 GCAAAATCCTTGACGGACTCTAC 59.629 47.826 0.00 0.00 46.80 2.59
381 526 3.889520 AAATCCTTGACGGACTCTACC 57.110 47.619 0.00 0.00 46.80 3.18
382 527 1.777941 ATCCTTGACGGACTCTACCC 58.222 55.000 0.00 0.00 46.80 3.69
383 528 0.406750 TCCTTGACGGACTCTACCCA 59.593 55.000 0.00 0.00 36.69 4.51
384 529 0.531200 CCTTGACGGACTCTACCCAC 59.469 60.000 0.00 0.00 33.16 4.61
385 530 0.531200 CTTGACGGACTCTACCCACC 59.469 60.000 0.00 0.00 0.00 4.61
386 531 0.113776 TTGACGGACTCTACCCACCT 59.886 55.000 0.00 0.00 0.00 4.00
387 532 0.611062 TGACGGACTCTACCCACCTG 60.611 60.000 0.00 0.00 0.00 4.00
388 533 1.305046 ACGGACTCTACCCACCTGG 60.305 63.158 0.00 0.00 41.37 4.45
389 534 1.000019 CGGACTCTACCCACCTGGA 60.000 63.158 0.00 0.00 37.39 3.86
390 535 0.613853 CGGACTCTACCCACCTGGAA 60.614 60.000 0.00 0.00 37.39 3.53
391 536 0.903236 GGACTCTACCCACCTGGAAC 59.097 60.000 0.00 0.00 37.39 3.62
392 537 1.640917 GACTCTACCCACCTGGAACA 58.359 55.000 0.00 0.00 37.39 3.18
393 538 2.188817 GACTCTACCCACCTGGAACAT 58.811 52.381 0.00 0.00 38.20 2.71
394 539 2.168728 GACTCTACCCACCTGGAACATC 59.831 54.545 0.00 0.00 38.20 3.06
395 540 2.225650 ACTCTACCCACCTGGAACATCT 60.226 50.000 0.00 0.00 38.20 2.90
396 541 2.169352 CTCTACCCACCTGGAACATCTG 59.831 54.545 0.00 0.00 38.20 2.90
397 542 1.210478 CTACCCACCTGGAACATCTGG 59.790 57.143 0.00 0.00 38.20 3.86
398 543 1.379044 CCCACCTGGAACATCTGGC 60.379 63.158 0.00 0.00 38.20 4.85
399 544 1.687612 CCACCTGGAACATCTGGCT 59.312 57.895 0.00 0.00 38.20 4.75
400 545 0.911769 CCACCTGGAACATCTGGCTA 59.088 55.000 0.00 0.00 38.20 3.93
401 546 1.492176 CCACCTGGAACATCTGGCTAT 59.508 52.381 0.00 0.00 38.20 2.97
402 547 2.486191 CCACCTGGAACATCTGGCTATC 60.486 54.545 0.00 0.00 38.20 2.08
403 548 1.771255 ACCTGGAACATCTGGCTATCC 59.229 52.381 0.00 0.00 38.20 2.59
404 549 1.072965 CCTGGAACATCTGGCTATCCC 59.927 57.143 0.00 0.00 38.20 3.85
405 550 1.072965 CTGGAACATCTGGCTATCCCC 59.927 57.143 0.00 0.00 38.20 4.81
406 551 1.345422 TGGAACATCTGGCTATCCCCT 60.345 52.381 0.00 0.00 0.00 4.79
407 552 1.072965 GGAACATCTGGCTATCCCCTG 59.927 57.143 0.00 0.00 0.00 4.45
419 564 1.848886 ATCCCCTGGAACCGGTTCAC 61.849 60.000 40.12 30.46 41.20 3.18
478 634 0.812412 AACCACGAAGTCACGGTTGG 60.812 55.000 0.00 0.00 41.76 3.77
479 635 1.227438 CCACGAAGTCACGGTTGGT 60.227 57.895 0.00 0.00 41.61 3.67
480 636 0.812412 CCACGAAGTCACGGTTGGTT 60.812 55.000 0.00 0.00 41.61 3.67
481 637 0.303493 CACGAAGTCACGGTTGGTTG 59.697 55.000 0.00 0.00 41.61 3.77
482 638 1.278637 CGAAGTCACGGTTGGTTGC 59.721 57.895 0.00 0.00 0.00 4.17
483 639 1.652563 GAAGTCACGGTTGGTTGCC 59.347 57.895 0.00 0.00 0.00 4.52
486 642 1.901464 GTCACGGTTGGTTGCCCAT 60.901 57.895 0.00 0.00 41.49 4.00
487 643 1.602323 TCACGGTTGGTTGCCCATC 60.602 57.895 0.00 0.00 41.49 3.51
489 645 1.152652 ACGGTTGGTTGCCCATCAA 60.153 52.632 0.00 0.00 41.49 2.57
512 668 4.202161 ACAGAGAAGAAGAAGAAGAACGCA 60.202 41.667 0.00 0.00 0.00 5.24
534 690 2.743928 GCACGCCACTTCCTGAGG 60.744 66.667 0.00 0.00 0.00 3.86
535 691 3.059982 CACGCCACTTCCTGAGGA 58.940 61.111 0.00 0.00 0.00 3.71
536 692 1.599047 CACGCCACTTCCTGAGGAT 59.401 57.895 0.04 0.00 0.00 3.24
537 693 0.742281 CACGCCACTTCCTGAGGATG 60.742 60.000 12.39 12.39 33.73 3.51
547 703 1.947456 TCCTGAGGATGATCGTACGTG 59.053 52.381 16.05 0.00 0.00 4.49
552 708 0.039437 GGATGATCGTACGTGCGGAT 60.039 55.000 25.48 16.79 0.00 4.18
608 822 2.843545 GTTGGTCCTTCTGGCCCA 59.156 61.111 0.00 0.00 0.00 5.36
609 823 1.303643 GTTGGTCCTTCTGGCCCAG 60.304 63.158 3.69 3.69 0.00 4.45
610 824 1.774217 TTGGTCCTTCTGGCCCAGT 60.774 57.895 11.27 0.00 32.61 4.00
611 825 2.067932 TTGGTCCTTCTGGCCCAGTG 62.068 60.000 11.27 5.13 32.61 3.66
612 826 2.360475 GTCCTTCTGGCCCAGTGC 60.360 66.667 11.27 0.00 40.16 4.40
613 827 4.020617 TCCTTCTGGCCCAGTGCG 62.021 66.667 11.27 0.25 42.61 5.34
654 868 2.691771 GGTCTCAGCTCGCTCGTGA 61.692 63.158 0.00 0.00 0.00 4.35
668 888 3.753539 GTGAGCACACGCGTCGAC 61.754 66.667 9.86 5.18 45.49 4.20
669 889 3.961197 TGAGCACACGCGTCGACT 61.961 61.111 9.86 6.43 45.49 4.18
694 924 4.468689 CCGGGAAAGGAGGGCGTC 62.469 72.222 0.00 0.00 0.00 5.19
752 986 0.320683 GGCCACAAAGCAAACCATCC 60.321 55.000 0.00 0.00 0.00 3.51
755 989 0.038343 CACAAAGCAAACCATCCCCG 60.038 55.000 0.00 0.00 0.00 5.73
756 990 1.079888 CAAAGCAAACCATCCCCGC 60.080 57.895 0.00 0.00 0.00 6.13
757 991 1.532794 AAAGCAAACCATCCCCGCA 60.533 52.632 0.00 0.00 0.00 5.69
758 992 1.118356 AAAGCAAACCATCCCCGCAA 61.118 50.000 0.00 0.00 0.00 4.85
759 993 1.535204 AAGCAAACCATCCCCGCAAG 61.535 55.000 0.00 0.00 0.00 4.01
762 996 1.532794 AAACCATCCCCGCAAGCAA 60.533 52.632 0.00 0.00 0.00 3.91
763 997 1.815817 AAACCATCCCCGCAAGCAAC 61.816 55.000 0.00 0.00 0.00 4.17
764 998 3.451894 CCATCCCCGCAAGCAACC 61.452 66.667 0.00 0.00 0.00 3.77
775 1009 3.254024 AAGCAACCGCCGATCACCT 62.254 57.895 0.00 0.00 39.83 4.00
776 1010 3.195698 GCAACCGCCGATCACCTC 61.196 66.667 0.00 0.00 0.00 3.85
777 1011 2.264480 CAACCGCCGATCACCTCA 59.736 61.111 0.00 0.00 0.00 3.86
778 1012 2.100631 CAACCGCCGATCACCTCAC 61.101 63.158 0.00 0.00 0.00 3.51
779 1013 3.310860 AACCGCCGATCACCTCACC 62.311 63.158 0.00 0.00 0.00 4.02
780 1014 3.461773 CCGCCGATCACCTCACCT 61.462 66.667 0.00 0.00 0.00 4.00
798 1032 3.787001 CCTCCTTCCTGGCCGTCC 61.787 72.222 0.00 0.00 35.26 4.79
825 1059 3.176552 TCCCGCGTCCGAATTAATTAA 57.823 42.857 4.92 0.00 36.29 1.40
827 1061 3.742369 TCCCGCGTCCGAATTAATTAATC 59.258 43.478 11.08 4.77 36.29 1.75
849 1083 0.969894 CTCCTTCCGACTCACACCTT 59.030 55.000 0.00 0.00 0.00 3.50
850 1084 1.344763 CTCCTTCCGACTCACACCTTT 59.655 52.381 0.00 0.00 0.00 3.11
851 1085 1.766496 TCCTTCCGACTCACACCTTTT 59.234 47.619 0.00 0.00 0.00 2.27
852 1086 2.143925 CCTTCCGACTCACACCTTTTC 58.856 52.381 0.00 0.00 0.00 2.29
853 1087 2.143925 CTTCCGACTCACACCTTTTCC 58.856 52.381 0.00 0.00 0.00 3.13
951 1217 0.036010 CATCCTCCAAACCGTCAGCT 60.036 55.000 0.00 0.00 0.00 4.24
1646 1922 1.682257 GCCACAGGAAGAAGAGGCT 59.318 57.895 0.00 0.00 39.02 4.58
1652 1928 0.322636 AGGAAGAAGAGGCTCGACGA 60.323 55.000 9.22 0.00 0.00 4.20
1653 1929 0.179158 GGAAGAAGAGGCTCGACGAC 60.179 60.000 9.22 2.41 0.00 4.34
1654 1930 0.521659 GAAGAAGAGGCTCGACGACG 60.522 60.000 9.22 0.00 41.26 5.12
1655 1931 0.954449 AAGAAGAGGCTCGACGACGA 60.954 55.000 9.98 9.98 46.56 4.20
1656 1932 1.226073 GAAGAGGCTCGACGACGAC 60.226 63.158 9.22 3.79 43.81 4.34
1657 1933 2.883223 GAAGAGGCTCGACGACGACG 62.883 65.000 13.39 13.39 43.81 5.12
1889 2171 2.582226 GCATGCCGACGACGATGA 60.582 61.111 6.36 0.00 42.66 2.92
1891 2173 1.946156 CATGCCGACGACGATGAGG 60.946 63.158 9.28 0.00 42.66 3.86
1893 2175 4.194720 GCCGACGACGATGAGGCT 62.195 66.667 9.28 0.00 44.06 4.58
1894 2176 2.490217 CCGACGACGATGAGGCTT 59.510 61.111 9.28 0.00 42.66 4.35
1914 2196 3.592814 CACGGCGGCGAGGATCTA 61.593 66.667 38.93 0.00 0.00 1.98
1968 2250 2.626266 TGTTCGGAACTACAGCTCAGAA 59.374 45.455 20.53 0.00 0.00 3.02
1969 2251 3.258372 TGTTCGGAACTACAGCTCAGAAT 59.742 43.478 20.53 0.00 29.88 2.40
1971 2253 3.089284 TCGGAACTACAGCTCAGAATCA 58.911 45.455 0.00 0.00 0.00 2.57
1972 2254 3.129462 TCGGAACTACAGCTCAGAATCAG 59.871 47.826 0.00 0.00 0.00 2.90
1973 2255 3.129462 CGGAACTACAGCTCAGAATCAGA 59.871 47.826 0.00 0.00 0.00 3.27
1974 2256 4.202101 CGGAACTACAGCTCAGAATCAGAT 60.202 45.833 0.00 0.00 0.00 2.90
1975 2257 5.049167 GGAACTACAGCTCAGAATCAGATG 58.951 45.833 0.00 0.00 33.31 2.90
1976 2258 4.669206 ACTACAGCTCAGAATCAGATGG 57.331 45.455 0.00 0.00 31.22 3.51
2001 2283 0.608640 ATCTGCCGGAGAAGAAACGT 59.391 50.000 5.05 0.00 33.12 3.99
2049 2760 2.266055 CCGGCTTCAGTCAGGACC 59.734 66.667 0.00 0.00 0.00 4.46
2068 2779 3.501349 ACCAACAGAAGACTCTAGCAGA 58.499 45.455 0.00 0.00 0.00 4.26
2081 2792 5.046910 CTCTAGCAGAGTAGCAGATTAGC 57.953 47.826 5.34 0.00 37.57 3.09
2094 2805 4.665281 CAGATTAGCTGCAGTCATATGC 57.335 45.455 16.64 0.00 46.68 3.14
2096 2807 3.327172 AGATTAGCTGCAGTCATATGCCT 59.673 43.478 16.64 3.46 45.91 4.75
2145 2864 7.325660 AGTTGTATTGATTGATAGCAGTTGG 57.674 36.000 0.00 0.00 0.00 3.77
2218 2938 5.991606 TGCGATGTAAATAGAGAATTGGGAG 59.008 40.000 0.00 0.00 0.00 4.30
2278 2998 4.843220 AGAACAGAGAGCAAAAACCATG 57.157 40.909 0.00 0.00 0.00 3.66
2360 3083 4.799564 ACACAACTGGTTCAAAACATGT 57.200 36.364 0.00 0.00 0.00 3.21
2388 3111 7.275999 GCAAACCTCAGATAAACTACTACTGAC 59.724 40.741 0.00 0.00 34.58 3.51
2424 3171 0.534412 CTCGGAGCAGACCATCTGTT 59.466 55.000 7.62 1.25 45.94 3.16
2464 3215 6.431234 CACCCTGACTAAGAAACTAGCAAAAT 59.569 38.462 0.00 0.00 0.00 1.82
2518 3295 0.689623 CTGAGATACTCCCATGCCCC 59.310 60.000 0.00 0.00 0.00 5.80
2519 3296 0.268869 TGAGATACTCCCATGCCCCT 59.731 55.000 0.00 0.00 0.00 4.79
2652 3429 7.087409 TCCTGCACACACAAATATTATTCAG 57.913 36.000 0.00 0.00 0.00 3.02
2668 3445 2.154854 TCAGCAATACGATGGCTAGC 57.845 50.000 6.04 6.04 35.82 3.42
2676 3453 1.227380 CGATGGCTAGCAGGGTGAC 60.227 63.158 18.24 0.00 0.00 3.67
2689 3469 3.679389 CAGGGTGACAGCAATAGAAAGT 58.321 45.455 7.01 0.00 0.00 2.66
2691 3471 5.245531 CAGGGTGACAGCAATAGAAAGTTA 58.754 41.667 7.01 0.00 0.00 2.24
2695 3475 6.128254 GGGTGACAGCAATAGAAAGTTAACTC 60.128 42.308 8.95 0.00 0.00 3.01
2705 3485 4.058817 AGAAAGTTAACTCACAAGAGGCG 58.941 43.478 8.95 0.00 46.44 5.52
2761 3544 2.274645 CGGCCATTCAAGTGCCCAA 61.275 57.895 2.24 0.00 42.29 4.12
2762 3545 1.814772 CGGCCATTCAAGTGCCCAAA 61.815 55.000 2.24 0.00 42.29 3.28
2763 3546 0.614812 GGCCATTCAAGTGCCCAAAT 59.385 50.000 0.00 0.00 39.30 2.32
2764 3547 1.830477 GGCCATTCAAGTGCCCAAATA 59.170 47.619 0.00 0.00 39.30 1.40
2765 3548 2.159057 GGCCATTCAAGTGCCCAAATAG 60.159 50.000 0.00 0.00 39.30 1.73
2766 3549 2.760092 GCCATTCAAGTGCCCAAATAGA 59.240 45.455 0.00 0.00 0.00 1.98
2767 3550 3.195396 GCCATTCAAGTGCCCAAATAGAA 59.805 43.478 0.00 0.00 0.00 2.10
2768 3551 4.322650 GCCATTCAAGTGCCCAAATAGAAA 60.323 41.667 0.00 0.00 0.00 2.52
2769 3552 5.792741 CCATTCAAGTGCCCAAATAGAAAA 58.207 37.500 0.00 0.00 0.00 2.29
2770 3553 6.229733 CCATTCAAGTGCCCAAATAGAAAAA 58.770 36.000 0.00 0.00 0.00 1.94
2801 3613 5.643379 TCCATTAATCAAGTGTCAAAGGC 57.357 39.130 0.00 0.00 0.00 4.35
2816 3628 2.433970 CAAAGGCAAAACAAGAAGGGGA 59.566 45.455 0.00 0.00 0.00 4.81
2865 3677 3.565764 TTGGGGCTATTCTCAGTGATG 57.434 47.619 0.00 0.00 0.00 3.07
2934 3746 2.831526 AGCTTTCTCAGAGAAGGTCTCC 59.168 50.000 20.36 6.79 44.42 3.71
3038 3850 1.003116 CATAAACATGAGCTCTGCCGC 60.003 52.381 16.19 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.744795 TGGCAAAAGCTTTCCTACAAAA 57.255 36.364 13.10 0.00 0.00 2.44
11 12 5.772672 TCAAAGTATGGCAAAAGCTTTCCTA 59.227 36.000 13.10 5.28 0.00 2.94
12 13 4.588528 TCAAAGTATGGCAAAAGCTTTCCT 59.411 37.500 13.10 0.00 0.00 3.36
19 20 4.871933 AGGGTTCAAAGTATGGCAAAAG 57.128 40.909 0.00 0.00 0.00 2.27
51 52 8.542497 TCAAACGTTCATAGCTTTAGTATTGT 57.458 30.769 0.00 0.00 0.00 2.71
52 53 9.820229 TTTCAAACGTTCATAGCTTTAGTATTG 57.180 29.630 0.00 0.00 0.00 1.90
54 55 9.988350 CATTTCAAACGTTCATAGCTTTAGTAT 57.012 29.630 0.00 0.00 0.00 2.12
55 56 9.210329 TCATTTCAAACGTTCATAGCTTTAGTA 57.790 29.630 0.00 0.00 0.00 1.82
56 57 8.094798 TCATTTCAAACGTTCATAGCTTTAGT 57.905 30.769 0.00 0.00 0.00 2.24
57 58 8.443160 TCTCATTTCAAACGTTCATAGCTTTAG 58.557 33.333 0.00 0.00 0.00 1.85
75 76 8.391106 AGTAGTTGCAAATCGTATTCTCATTTC 58.609 33.333 1.02 0.00 0.00 2.17
102 103 6.826231 TCGTGCCATATATTTCAGGAAAGAAA 59.174 34.615 0.66 0.00 41.31 2.52
112 113 6.503524 ACCAAAATGTCGTGCCATATATTTC 58.496 36.000 0.00 0.00 0.00 2.17
121 122 1.857837 CAACAACCAAAATGTCGTGCC 59.142 47.619 0.00 0.00 0.00 5.01
123 124 4.206200 GCTAACAACAACCAAAATGTCGTG 59.794 41.667 0.00 0.00 0.00 4.35
125 126 3.733727 GGCTAACAACAACCAAAATGTCG 59.266 43.478 0.00 0.00 0.00 4.35
150 151 1.757682 TTACATCCATGGCCGTTTCC 58.242 50.000 6.96 0.00 0.00 3.13
199 201 1.946267 CGTGTGTTTTTCCTCCCGG 59.054 57.895 0.00 0.00 0.00 5.73
200 202 1.281656 GCGTGTGTTTTTCCTCCCG 59.718 57.895 0.00 0.00 0.00 5.14
243 305 4.446413 ATTGGGACCGACGCCGAC 62.446 66.667 0.00 0.00 38.22 4.79
244 306 4.137872 GATTGGGACCGACGCCGA 62.138 66.667 0.00 0.00 38.22 5.54
245 307 2.083835 ATAGATTGGGACCGACGCCG 62.084 60.000 0.00 0.00 0.00 6.46
246 308 0.319641 GATAGATTGGGACCGACGCC 60.320 60.000 0.00 0.00 0.00 5.68
247 309 0.674534 AGATAGATTGGGACCGACGC 59.325 55.000 0.00 0.00 0.00 5.19
259 321 5.517322 AAGAACGTTTCGCCTAGATAGAT 57.483 39.130 0.46 0.00 34.02 1.98
260 322 4.495349 CGAAGAACGTTTCGCCTAGATAGA 60.495 45.833 9.23 0.00 42.74 1.98
261 323 3.724751 CGAAGAACGTTTCGCCTAGATAG 59.275 47.826 9.23 0.00 42.74 2.08
262 324 3.688272 CGAAGAACGTTTCGCCTAGATA 58.312 45.455 9.23 0.00 42.74 1.98
274 336 0.530744 TATGCCTGAGCGAAGAACGT 59.469 50.000 0.00 0.00 44.31 3.99
285 347 0.391130 GTCCGTGCTGTTATGCCTGA 60.391 55.000 0.00 0.00 0.00 3.86
287 349 1.078426 GGTCCGTGCTGTTATGCCT 60.078 57.895 0.00 0.00 0.00 4.75
288 350 0.958382 TTGGTCCGTGCTGTTATGCC 60.958 55.000 0.00 0.00 0.00 4.40
301 374 0.886490 CCACAGCACTGTCTTGGTCC 60.886 60.000 0.00 0.00 42.83 4.46
304 377 0.886490 GGACCACAGCACTGTCTTGG 60.886 60.000 0.00 2.36 42.83 3.61
312 385 1.007038 TTCGTACGGACCACAGCAC 60.007 57.895 16.52 0.00 0.00 4.40
314 387 2.084681 CGTTCGTACGGACCACAGC 61.085 63.158 20.78 0.00 43.94 4.40
315 388 4.141883 CGTTCGTACGGACCACAG 57.858 61.111 20.78 2.97 43.94 3.66
369 514 1.321074 CCAGGTGGGTAGAGTCCGTC 61.321 65.000 0.00 0.00 0.00 4.79
370 515 1.305046 CCAGGTGGGTAGAGTCCGT 60.305 63.158 0.00 0.00 0.00 4.69
371 516 0.613853 TTCCAGGTGGGTAGAGTCCG 60.614 60.000 0.00 0.00 38.11 4.79
372 517 0.903236 GTTCCAGGTGGGTAGAGTCC 59.097 60.000 0.00 0.00 38.11 3.85
373 518 1.640917 TGTTCCAGGTGGGTAGAGTC 58.359 55.000 0.00 0.00 38.11 3.36
374 519 2.188817 GATGTTCCAGGTGGGTAGAGT 58.811 52.381 0.00 0.00 38.11 3.24
375 520 2.169352 CAGATGTTCCAGGTGGGTAGAG 59.831 54.545 0.00 0.00 38.11 2.43
376 521 2.187958 CAGATGTTCCAGGTGGGTAGA 58.812 52.381 0.00 0.00 38.11 2.59
377 522 1.210478 CCAGATGTTCCAGGTGGGTAG 59.790 57.143 0.00 0.00 38.11 3.18
378 523 1.285280 CCAGATGTTCCAGGTGGGTA 58.715 55.000 0.00 0.00 38.11 3.69
379 524 2.078452 CCAGATGTTCCAGGTGGGT 58.922 57.895 0.00 0.00 38.11 4.51
380 525 1.379044 GCCAGATGTTCCAGGTGGG 60.379 63.158 0.00 0.00 35.41 4.61
381 526 0.911769 TAGCCAGATGTTCCAGGTGG 59.088 55.000 0.00 0.00 0.00 4.61
382 527 2.486191 GGATAGCCAGATGTTCCAGGTG 60.486 54.545 0.00 0.00 0.00 4.00
383 528 1.771255 GGATAGCCAGATGTTCCAGGT 59.229 52.381 0.00 0.00 0.00 4.00
384 529 1.072965 GGGATAGCCAGATGTTCCAGG 59.927 57.143 0.00 0.00 35.15 4.45
385 530 1.072965 GGGGATAGCCAGATGTTCCAG 59.927 57.143 0.00 0.00 35.15 3.86
386 531 1.140312 GGGGATAGCCAGATGTTCCA 58.860 55.000 0.00 0.00 35.15 3.53
387 532 1.072965 CAGGGGATAGCCAGATGTTCC 59.927 57.143 0.00 0.00 35.15 3.62
388 533 1.072965 CCAGGGGATAGCCAGATGTTC 59.927 57.143 0.00 0.00 35.15 3.18
389 534 1.143813 CCAGGGGATAGCCAGATGTT 58.856 55.000 0.00 0.00 35.15 2.71
390 535 0.268869 TCCAGGGGATAGCCAGATGT 59.731 55.000 0.00 0.00 35.15 3.06
391 536 1.072965 GTTCCAGGGGATAGCCAGATG 59.927 57.143 0.00 0.00 35.15 2.90
392 537 1.439543 GTTCCAGGGGATAGCCAGAT 58.560 55.000 0.00 0.00 35.15 2.90
393 538 0.694444 GGTTCCAGGGGATAGCCAGA 60.694 60.000 0.00 0.00 35.15 3.86
394 539 1.839894 GGTTCCAGGGGATAGCCAG 59.160 63.158 0.00 0.00 35.15 4.85
395 540 2.070039 CGGTTCCAGGGGATAGCCA 61.070 63.158 0.00 0.00 35.15 4.75
396 541 2.819284 CCGGTTCCAGGGGATAGCC 61.819 68.421 0.00 0.00 0.00 3.93
397 542 1.632965 AACCGGTTCCAGGGGATAGC 61.633 60.000 15.86 0.00 0.00 2.97
398 543 0.468648 GAACCGGTTCCAGGGGATAG 59.531 60.000 33.02 0.00 33.64 2.08
399 544 0.252789 TGAACCGGTTCCAGGGGATA 60.253 55.000 37.66 18.58 38.77 2.59
400 545 1.540367 TGAACCGGTTCCAGGGGAT 60.540 57.895 37.66 7.15 38.77 3.85
401 546 2.122324 TGAACCGGTTCCAGGGGA 60.122 61.111 37.66 19.98 38.77 4.81
402 547 2.033602 GTGAACCGGTTCCAGGGG 59.966 66.667 37.66 0.00 38.77 4.79
403 548 2.358247 CGTGAACCGGTTCCAGGG 60.358 66.667 37.66 22.64 38.77 4.45
404 549 1.666872 GACGTGAACCGGTTCCAGG 60.667 63.158 37.66 30.17 42.24 4.45
405 550 0.666577 GAGACGTGAACCGGTTCCAG 60.667 60.000 37.66 31.95 42.24 3.86
406 551 1.364901 GAGACGTGAACCGGTTCCA 59.635 57.895 37.66 25.17 42.24 3.53
407 552 1.373873 GGAGACGTGAACCGGTTCC 60.374 63.158 37.66 28.11 42.24 3.62
479 635 3.072915 TCTTCTTCTCTGTTGATGGGCAA 59.927 43.478 0.00 0.00 0.00 4.52
480 636 2.639347 TCTTCTTCTCTGTTGATGGGCA 59.361 45.455 0.00 0.00 0.00 5.36
481 637 3.340814 TCTTCTTCTCTGTTGATGGGC 57.659 47.619 0.00 0.00 0.00 5.36
482 638 5.157940 TCTTCTTCTTCTCTGTTGATGGG 57.842 43.478 0.00 0.00 0.00 4.00
483 639 6.462500 TCTTCTTCTTCTTCTCTGTTGATGG 58.538 40.000 0.00 0.00 0.00 3.51
486 642 5.980116 CGTTCTTCTTCTTCTTCTCTGTTGA 59.020 40.000 0.00 0.00 0.00 3.18
487 643 5.332959 GCGTTCTTCTTCTTCTTCTCTGTTG 60.333 44.000 0.00 0.00 0.00 3.33
489 645 4.202161 TGCGTTCTTCTTCTTCTTCTCTGT 60.202 41.667 0.00 0.00 0.00 3.41
490 646 4.149747 GTGCGTTCTTCTTCTTCTTCTCTG 59.850 45.833 0.00 0.00 0.00 3.35
491 647 4.303282 GTGCGTTCTTCTTCTTCTTCTCT 58.697 43.478 0.00 0.00 0.00 3.10
492 648 3.430556 GGTGCGTTCTTCTTCTTCTTCTC 59.569 47.826 0.00 0.00 0.00 2.87
493 649 3.181465 TGGTGCGTTCTTCTTCTTCTTCT 60.181 43.478 0.00 0.00 0.00 2.85
494 650 3.059529 GTGGTGCGTTCTTCTTCTTCTTC 60.060 47.826 0.00 0.00 0.00 2.87
495 651 2.872858 GTGGTGCGTTCTTCTTCTTCTT 59.127 45.455 0.00 0.00 0.00 2.52
526 682 2.357952 CACGTACGATCATCCTCAGGAA 59.642 50.000 24.41 0.00 34.34 3.36
527 683 1.947456 CACGTACGATCATCCTCAGGA 59.053 52.381 24.41 0.00 35.55 3.86
534 690 1.053048 CATCCGCACGTACGATCATC 58.947 55.000 24.41 4.73 34.06 2.92
535 691 0.318699 CCATCCGCACGTACGATCAT 60.319 55.000 24.41 3.29 34.06 2.45
536 692 1.065109 CCATCCGCACGTACGATCA 59.935 57.895 24.41 0.77 34.06 2.92
537 693 0.933509 GTCCATCCGCACGTACGATC 60.934 60.000 24.41 11.63 34.06 3.69
547 703 2.506472 GGAGAAGGGTCCATCCGC 59.494 66.667 0.00 0.00 36.51 5.54
628 842 2.048127 AGCTGAGACCGTTTCCGC 60.048 61.111 0.00 0.00 0.00 5.54
654 868 3.881092 CTGAGTCGACGCGTGTGCT 62.881 63.158 20.70 11.51 39.65 4.40
666 886 0.109226 CTTTCCCGGTCGACTGAGTC 60.109 60.000 26.01 1.65 0.00 3.36
667 887 1.533469 CCTTTCCCGGTCGACTGAGT 61.533 60.000 26.01 0.00 0.00 3.41
668 888 1.215647 CCTTTCCCGGTCGACTGAG 59.784 63.158 26.01 13.31 0.00 3.35
669 889 1.228644 TCCTTTCCCGGTCGACTGA 60.229 57.895 26.01 11.98 0.00 3.41
694 924 2.434884 AGGCCGACGTGCATTCAG 60.435 61.111 0.00 0.00 0.00 3.02
717 947 2.742372 CCAAGGCGTTGTCGAGGG 60.742 66.667 17.23 0.00 39.71 4.30
718 948 3.423154 GCCAAGGCGTTGTCGAGG 61.423 66.667 17.23 3.45 39.71 4.63
719 949 3.423154 GGCCAAGGCGTTGTCGAG 61.423 66.667 17.23 3.86 43.06 4.04
720 950 4.243008 TGGCCAAGGCGTTGTCGA 62.243 61.111 17.23 0.00 43.06 4.20
755 989 3.430862 TGATCGGCGGTTGCTTGC 61.431 61.111 7.21 0.00 42.25 4.01
756 990 2.480555 GTGATCGGCGGTTGCTTG 59.519 61.111 7.21 0.00 42.25 4.01
757 991 2.746277 GGTGATCGGCGGTTGCTT 60.746 61.111 7.21 0.00 42.25 3.91
758 992 3.665675 GAGGTGATCGGCGGTTGCT 62.666 63.158 7.21 0.00 42.25 3.91
759 993 3.195698 GAGGTGATCGGCGGTTGC 61.196 66.667 7.21 0.00 41.71 4.17
762 996 3.771160 GGTGAGGTGATCGGCGGT 61.771 66.667 7.21 0.00 0.00 5.68
763 997 3.432051 GAGGTGAGGTGATCGGCGG 62.432 68.421 7.21 0.00 0.00 6.13
764 998 2.105128 GAGGTGAGGTGATCGGCG 59.895 66.667 0.00 0.00 0.00 6.46
775 1009 1.613630 GCCAGGAAGGAGGAGGTGA 60.614 63.158 0.00 0.00 41.22 4.02
776 1010 2.674220 GGCCAGGAAGGAGGAGGTG 61.674 68.421 0.00 0.00 41.22 4.00
777 1011 2.285743 GGCCAGGAAGGAGGAGGT 60.286 66.667 0.00 0.00 41.22 3.85
778 1012 3.474570 CGGCCAGGAAGGAGGAGG 61.475 72.222 2.24 0.00 41.22 4.30
779 1013 2.685380 ACGGCCAGGAAGGAGGAG 60.685 66.667 2.24 0.00 41.22 3.69
780 1014 2.683933 GACGGCCAGGAAGGAGGA 60.684 66.667 2.24 0.00 41.22 3.71
798 1032 4.925576 CGGACGCGGGAAGGATCG 62.926 72.222 12.47 0.00 0.00 3.69
825 1059 2.494073 GTGTGAGTCGGAAGGAGAAGAT 59.506 50.000 0.00 0.00 0.00 2.40
827 1061 1.067495 GGTGTGAGTCGGAAGGAGAAG 60.067 57.143 0.00 0.00 0.00 2.85
951 1217 4.704103 AGCTCCGGTGGCCTGAGA 62.704 66.667 16.02 0.00 37.09 3.27
1570 1840 2.954868 GTATGAGTCGGCGGCGTG 60.955 66.667 31.06 4.09 0.00 5.34
1652 1928 4.421446 GCTCGTCGTCGTCGTCGT 62.421 66.667 18.44 0.00 45.27 4.34
1720 2002 1.859080 GTCTTTGAACGTCAGCTTCGT 59.141 47.619 7.74 7.74 43.45 3.85
1731 2013 1.531578 GCCTCTTCCACGTCTTTGAAC 59.468 52.381 0.00 0.00 0.00 3.18
1887 2169 4.697756 CCGCCGTGGAAAGCCTCA 62.698 66.667 0.00 0.00 42.00 3.86
1914 2196 1.153549 GAAGGTCTTGCGATCGGCT 60.154 57.895 18.30 0.00 44.05 5.52
1971 2253 0.831288 CCGGCAGATCCTCTCCATCT 60.831 60.000 0.00 0.00 0.00 2.90
1972 2254 0.829602 TCCGGCAGATCCTCTCCATC 60.830 60.000 0.00 0.00 0.00 3.51
1973 2255 0.831288 CTCCGGCAGATCCTCTCCAT 60.831 60.000 0.00 0.00 0.00 3.41
1974 2256 1.456518 CTCCGGCAGATCCTCTCCA 60.457 63.158 0.00 0.00 0.00 3.86
1975 2257 0.757188 TTCTCCGGCAGATCCTCTCC 60.757 60.000 0.00 0.00 0.00 3.71
1976 2258 0.673437 CTTCTCCGGCAGATCCTCTC 59.327 60.000 0.00 0.00 0.00 3.20
2001 2283 0.747255 GCGTATCCTGCTCTTCTCCA 59.253 55.000 0.00 0.00 0.00 3.86
2074 2785 3.327172 AGGCATATGACTGCAGCTAATCT 59.673 43.478 11.26 0.00 44.12 2.40
2075 2786 3.672808 AGGCATATGACTGCAGCTAATC 58.327 45.455 11.26 4.15 44.12 1.75
2076 2787 3.784511 AGGCATATGACTGCAGCTAAT 57.215 42.857 11.26 7.62 44.12 1.73
2077 2788 4.897509 ATAGGCATATGACTGCAGCTAA 57.102 40.909 21.96 0.00 44.12 3.09
2078 2789 4.142071 GCTATAGGCATATGACTGCAGCTA 60.142 45.833 27.05 8.57 44.12 3.32
2079 2790 3.369261 GCTATAGGCATATGACTGCAGCT 60.369 47.826 27.05 10.31 44.12 4.24
2080 2791 2.935201 GCTATAGGCATATGACTGCAGC 59.065 50.000 21.96 22.59 44.12 5.25
2094 2805 6.166984 TCAAGAAACCATCTCTGCTATAGG 57.833 41.667 1.04 0.00 37.42 2.57
2096 2807 9.770097 CTAAATCAAGAAACCATCTCTGCTATA 57.230 33.333 0.00 0.00 37.42 1.31
2145 2864 7.194607 TCTGCAATATATAGCTGCAAAAGTC 57.805 36.000 18.11 0.00 44.94 3.01
2230 2950 9.062524 TCGGTGAAAAATCGGAATCATATTAAT 57.937 29.630 0.00 0.00 0.00 1.40
2299 3019 7.278868 CACCATCTTAAATTATATCGAGGAGCC 59.721 40.741 0.00 0.00 0.00 4.70
2301 3021 9.929180 TTCACCATCTTAAATTATATCGAGGAG 57.071 33.333 0.00 0.00 0.00 3.69
2360 3083 7.602644 CAGTAGTAGTTTATCTGAGGTTTGCAA 59.397 37.037 0.00 0.00 0.00 4.08
2424 3171 3.054287 TCAGGGTGTTGTAGTTTGTCCAA 60.054 43.478 0.00 0.00 0.00 3.53
2464 3215 0.401356 TCAGCCAAACAGCTCCATGA 59.599 50.000 0.00 0.00 42.61 3.07
2518 3295 3.380004 AGTTTCTCGCTGAGGATGTAGAG 59.620 47.826 5.87 0.00 0.00 2.43
2519 3296 3.357203 AGTTTCTCGCTGAGGATGTAGA 58.643 45.455 5.87 0.00 0.00 2.59
2652 3429 1.151668 CCTGCTAGCCATCGTATTGC 58.848 55.000 13.29 0.00 0.00 3.56
2668 3445 3.679389 ACTTTCTATTGCTGTCACCCTG 58.321 45.455 0.00 0.00 0.00 4.45
2676 3453 8.087982 TCTTGTGAGTTAACTTTCTATTGCTG 57.912 34.615 10.02 0.00 0.00 4.41
2689 3469 1.689813 TCACCGCCTCTTGTGAGTTAA 59.310 47.619 0.00 0.00 36.62 2.01
2691 3471 2.133195 TCACCGCCTCTTGTGAGTT 58.867 52.632 0.00 0.00 36.62 3.01
2695 3475 0.249868 TGTTCTCACCGCCTCTTGTG 60.250 55.000 0.00 0.00 0.00 3.33
2702 3482 1.880027 AGTTCATTTGTTCTCACCGCC 59.120 47.619 0.00 0.00 0.00 6.13
2705 3485 7.480810 AGTTGTTTAGTTCATTTGTTCTCACC 58.519 34.615 0.00 0.00 0.00 4.02
2710 3490 8.403236 ACTGGTAGTTGTTTAGTTCATTTGTTC 58.597 33.333 0.00 0.00 0.00 3.18
2775 3558 9.066892 GCCTTTGACACTTGATTAATGGATATA 57.933 33.333 0.00 0.00 0.00 0.86
2776 3559 7.560991 TGCCTTTGACACTTGATTAATGGATAT 59.439 33.333 0.00 0.00 0.00 1.63
2777 3560 6.889177 TGCCTTTGACACTTGATTAATGGATA 59.111 34.615 0.00 0.00 0.00 2.59
2778 3561 5.716228 TGCCTTTGACACTTGATTAATGGAT 59.284 36.000 0.00 0.00 0.00 3.41
2779 3562 5.076182 TGCCTTTGACACTTGATTAATGGA 58.924 37.500 0.00 0.00 0.00 3.41
2780 3563 5.389859 TGCCTTTGACACTTGATTAATGG 57.610 39.130 0.00 0.00 0.00 3.16
2781 3564 7.224362 TGTTTTGCCTTTGACACTTGATTAATG 59.776 33.333 0.00 0.00 0.00 1.90
2782 3565 7.271511 TGTTTTGCCTTTGACACTTGATTAAT 58.728 30.769 0.00 0.00 0.00 1.40
2783 3566 6.634805 TGTTTTGCCTTTGACACTTGATTAA 58.365 32.000 0.00 0.00 0.00 1.40
2784 3567 6.214191 TGTTTTGCCTTTGACACTTGATTA 57.786 33.333 0.00 0.00 0.00 1.75
2801 3613 5.337578 TCTTGTTTCCCCTTCTTGTTTTG 57.662 39.130 0.00 0.00 0.00 2.44
2816 3628 7.344612 ACCAGAAGGAATTTAAGGTTCTTGTTT 59.655 33.333 0.00 0.00 38.69 2.83
2865 3677 5.036117 TGTTCAAGGAGCTATGGGATAAC 57.964 43.478 0.00 0.00 0.00 1.89
2934 3746 8.558973 AACCTGAAGACAAGAAGATAATTGAG 57.441 34.615 0.00 0.00 0.00 3.02
3038 3850 6.866248 AGTGTGTTTGTTCAACCAAGTTTTAG 59.134 34.615 0.00 0.00 33.97 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.