Multiple sequence alignment - TraesCS4A01G268000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G268000 chr4A 100.000 2826 0 0 1 2826 580476666 580479491 0.000000e+00 5219.0
1 TraesCS4A01G268000 chr4D 92.716 1867 71 22 641 2479 21509870 21511699 0.000000e+00 2634.0
2 TraesCS4A01G268000 chr4D 86.331 278 18 6 2535 2795 21511782 21512056 4.610000e-73 285.0
3 TraesCS4A01G268000 chr4B 86.828 1822 109 55 1012 2761 33361139 33359377 0.000000e+00 1914.0
4 TraesCS4A01G268000 chr4B 93.137 408 25 2 231 638 568708300 568707896 1.870000e-166 595.0
5 TraesCS4A01G268000 chr4B 84.783 368 24 21 671 1022 33361751 33361400 9.700000e-90 340.0
6 TraesCS4A01G268000 chr4B 100.000 41 0 0 206 246 568708360 568708320 3.020000e-10 76.8
7 TraesCS4A01G268000 chr3A 93.317 419 26 2 227 644 725838074 725837657 4.000000e-173 617.0
8 TraesCS4A01G268000 chr3A 92.308 52 3 1 198 248 61534747 61534696 3.910000e-09 73.1
9 TraesCS4A01G268000 chr7D 93.462 413 24 3 227 638 219836961 219836551 6.690000e-171 610.0
10 TraesCS4A01G268000 chr7D 91.071 56 2 3 189 244 219837031 219836979 3.910000e-09 73.1
11 TraesCS4A01G268000 chr3B 93.253 415 25 2 227 641 171086892 171086481 2.410000e-170 608.0
12 TraesCS4A01G268000 chr5B 93.137 408 26 2 232 639 120037876 120038281 5.210000e-167 597.0
13 TraesCS4A01G268000 chr6A 92.736 413 26 4 227 638 105536335 105536744 6.740000e-166 593.0
14 TraesCS4A01G268000 chr2B 92.892 408 27 2 231 638 710833082 710832677 2.420000e-165 592.0
15 TraesCS4A01G268000 chr2B 100.000 40 0 0 207 246 679155456 679155417 1.090000e-09 75.0
16 TraesCS4A01G268000 chr2B 97.561 41 1 0 206 246 710833142 710833102 1.400000e-08 71.3
17 TraesCS4A01G268000 chr5A 92.476 412 26 4 227 638 116569646 116569240 4.060000e-163 584.0
18 TraesCS4A01G268000 chr5A 100.000 41 0 0 206 246 116569702 116569662 3.020000e-10 76.8
19 TraesCS4A01G268000 chr1B 92.252 413 29 2 227 638 315614565 315614975 1.460000e-162 582.0
20 TraesCS4A01G268000 chr7A 97.778 45 1 0 202 246 255214454 255214498 8.390000e-11 78.7
21 TraesCS4A01G268000 chr7A 100.000 28 0 0 20 47 8217324 8217351 5.000000e-03 52.8
22 TraesCS4A01G268000 chr7B 100.000 41 0 0 206 246 11930218 11930178 3.020000e-10 76.8
23 TraesCS4A01G268000 chr3D 97.727 44 1 0 203 246 519301314 519301357 3.020000e-10 76.8
24 TraesCS4A01G268000 chr2A 100.000 28 0 0 20 47 743378413 743378386 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G268000 chr4A 580476666 580479491 2825 False 5219.0 5219 100.0000 1 2826 1 chr4A.!!$F1 2825
1 TraesCS4A01G268000 chr4D 21509870 21512056 2186 False 1459.5 2634 89.5235 641 2795 2 chr4D.!!$F1 2154
2 TraesCS4A01G268000 chr4B 33359377 33361751 2374 True 1127.0 1914 85.8055 671 2761 2 chr4B.!!$R1 2090

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 264 0.033504 CGCCAGGGCACGATTACTAT 59.966 55.0 11.42 0.0 42.06 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 2192 0.038343 CCGGGCACAAAGTGGAAATG 60.038 55.0 0.0 0.0 33.64 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.579666 AGGTTCGAACACTGTAGTATGTAA 57.420 37.500 28.24 0.00 0.00 2.41
25 26 7.166691 AGGTTCGAACACTGTAGTATGTAAT 57.833 36.000 28.24 0.00 0.00 1.89
26 27 8.284945 AGGTTCGAACACTGTAGTATGTAATA 57.715 34.615 28.24 0.00 0.00 0.98
27 28 8.404000 AGGTTCGAACACTGTAGTATGTAATAG 58.596 37.037 28.24 0.00 0.00 1.73
28 29 8.400947 GGTTCGAACACTGTAGTATGTAATAGA 58.599 37.037 28.24 0.00 0.00 1.98
29 30 9.435802 GTTCGAACACTGTAGTATGTAATAGAG 57.564 37.037 23.12 0.00 0.00 2.43
30 31 8.953368 TCGAACACTGTAGTATGTAATAGAGA 57.047 34.615 0.00 0.00 0.00 3.10
31 32 9.387257 TCGAACACTGTAGTATGTAATAGAGAA 57.613 33.333 0.00 0.00 0.00 2.87
32 33 9.653067 CGAACACTGTAGTATGTAATAGAGAAG 57.347 37.037 0.00 0.00 0.00 2.85
33 34 9.453325 GAACACTGTAGTATGTAATAGAGAAGC 57.547 37.037 0.00 0.00 0.00 3.86
34 35 8.521170 ACACTGTAGTATGTAATAGAGAAGCA 57.479 34.615 0.00 0.00 0.00 3.91
35 36 8.967918 ACACTGTAGTATGTAATAGAGAAGCAA 58.032 33.333 0.00 0.00 0.00 3.91
36 37 9.803315 CACTGTAGTATGTAATAGAGAAGCAAA 57.197 33.333 0.00 0.00 0.00 3.68
53 54 2.253603 CAAATAAAGTTGCTGGCGAGC 58.746 47.619 14.55 14.55 46.44 5.03
54 55 1.826385 AATAAAGTTGCTGGCGAGCT 58.174 45.000 21.84 3.39 46.39 4.09
55 56 1.373570 ATAAAGTTGCTGGCGAGCTC 58.626 50.000 21.84 14.11 46.39 4.09
56 57 0.673644 TAAAGTTGCTGGCGAGCTCC 60.674 55.000 21.84 11.65 46.39 4.70
57 58 3.909086 AAGTTGCTGGCGAGCTCCC 62.909 63.158 21.84 11.08 46.39 4.30
58 59 4.400961 GTTGCTGGCGAGCTCCCT 62.401 66.667 21.84 0.00 46.39 4.20
59 60 2.683572 TTGCTGGCGAGCTCCCTA 60.684 61.111 21.84 3.75 46.39 3.53
60 61 2.725312 TTGCTGGCGAGCTCCCTAG 61.725 63.158 21.84 13.66 46.39 3.02
61 62 2.835431 GCTGGCGAGCTCCCTAGA 60.835 66.667 15.28 0.00 42.52 2.43
62 63 2.206536 GCTGGCGAGCTCCCTAGAT 61.207 63.158 15.28 0.00 42.52 1.98
63 64 1.753368 GCTGGCGAGCTCCCTAGATT 61.753 60.000 15.28 0.00 42.52 2.40
64 65 1.621992 CTGGCGAGCTCCCTAGATTA 58.378 55.000 18.49 1.21 0.00 1.75
65 66 1.543802 CTGGCGAGCTCCCTAGATTAG 59.456 57.143 18.49 6.31 0.00 1.73
66 67 0.245266 GGCGAGCTCCCTAGATTAGC 59.755 60.000 8.47 1.80 36.48 3.09
68 69 2.438411 GCGAGCTCCCTAGATTAGCTA 58.562 52.381 8.47 0.00 46.29 3.32
69 70 2.422127 GCGAGCTCCCTAGATTAGCTAG 59.578 54.545 8.47 12.51 46.29 3.42
84 85 8.900983 AGATTAGCTAGATTTTTCATGACTCC 57.099 34.615 0.00 0.00 0.00 3.85
85 86 8.713036 AGATTAGCTAGATTTTTCATGACTCCT 58.287 33.333 0.00 0.00 0.00 3.69
86 87 8.674263 ATTAGCTAGATTTTTCATGACTCCTG 57.326 34.615 0.00 0.00 0.00 3.86
87 88 6.305272 AGCTAGATTTTTCATGACTCCTGA 57.695 37.500 0.00 0.00 0.00 3.86
88 89 6.347696 AGCTAGATTTTTCATGACTCCTGAG 58.652 40.000 0.00 0.00 0.00 3.35
89 90 6.070309 AGCTAGATTTTTCATGACTCCTGAGT 60.070 38.462 0.00 0.00 45.84 3.41
98 99 2.202295 GACTCCTGAGTCGATCAAGC 57.798 55.000 11.25 0.00 46.93 4.01
99 100 0.820871 ACTCCTGAGTCGATCAAGCC 59.179 55.000 0.00 0.00 36.92 4.35
100 101 1.110442 CTCCTGAGTCGATCAAGCCT 58.890 55.000 0.00 0.00 37.52 4.58
101 102 1.066908 CTCCTGAGTCGATCAAGCCTC 59.933 57.143 0.00 0.00 37.52 4.70
102 103 0.820226 CCTGAGTCGATCAAGCCTCA 59.180 55.000 0.00 0.00 37.52 3.86
103 104 1.202394 CCTGAGTCGATCAAGCCTCAG 60.202 57.143 17.26 17.26 46.68 3.35
104 105 1.476085 CTGAGTCGATCAAGCCTCAGT 59.524 52.381 16.38 0.00 43.71 3.41
105 106 1.474478 TGAGTCGATCAAGCCTCAGTC 59.526 52.381 0.00 0.00 34.02 3.51
106 107 1.474478 GAGTCGATCAAGCCTCAGTCA 59.526 52.381 0.00 0.00 0.00 3.41
107 108 1.895798 AGTCGATCAAGCCTCAGTCAA 59.104 47.619 0.00 0.00 0.00 3.18
108 109 2.499289 AGTCGATCAAGCCTCAGTCAAT 59.501 45.455 0.00 0.00 0.00 2.57
109 110 2.606725 GTCGATCAAGCCTCAGTCAATG 59.393 50.000 0.00 0.00 0.00 2.82
110 111 1.329906 CGATCAAGCCTCAGTCAATGC 59.670 52.381 0.00 0.00 0.00 3.56
111 112 2.641305 GATCAAGCCTCAGTCAATGCT 58.359 47.619 0.00 0.00 35.08 3.79
112 113 3.739209 CGATCAAGCCTCAGTCAATGCTA 60.739 47.826 0.00 0.00 32.82 3.49
113 114 2.977914 TCAAGCCTCAGTCAATGCTAC 58.022 47.619 0.00 0.00 32.82 3.58
114 115 2.302733 TCAAGCCTCAGTCAATGCTACA 59.697 45.455 0.00 0.00 32.82 2.74
115 116 3.054875 TCAAGCCTCAGTCAATGCTACAT 60.055 43.478 0.00 0.00 32.82 2.29
116 117 3.641434 AGCCTCAGTCAATGCTACATT 57.359 42.857 0.00 0.00 30.97 2.71
117 118 3.539604 AGCCTCAGTCAATGCTACATTC 58.460 45.455 0.00 0.00 30.97 2.67
118 119 3.054875 AGCCTCAGTCAATGCTACATTCA 60.055 43.478 0.00 0.00 30.97 2.57
119 120 3.881688 GCCTCAGTCAATGCTACATTCAT 59.118 43.478 0.00 0.00 0.00 2.57
120 121 4.261072 GCCTCAGTCAATGCTACATTCATG 60.261 45.833 0.00 0.00 0.00 3.07
121 122 5.121105 CCTCAGTCAATGCTACATTCATGA 58.879 41.667 0.00 0.00 0.00 3.07
122 123 5.236695 CCTCAGTCAATGCTACATTCATGAG 59.763 44.000 13.72 13.72 0.00 2.90
123 124 5.737860 TCAGTCAATGCTACATTCATGAGT 58.262 37.500 0.00 0.00 0.00 3.41
124 125 5.814188 TCAGTCAATGCTACATTCATGAGTC 59.186 40.000 0.00 0.00 0.00 3.36
125 126 5.816258 CAGTCAATGCTACATTCATGAGTCT 59.184 40.000 0.00 0.00 0.00 3.24
126 127 6.315642 CAGTCAATGCTACATTCATGAGTCTT 59.684 38.462 0.00 0.00 0.00 3.01
127 128 7.493645 CAGTCAATGCTACATTCATGAGTCTTA 59.506 37.037 0.00 0.00 0.00 2.10
128 129 7.493971 AGTCAATGCTACATTCATGAGTCTTAC 59.506 37.037 0.00 0.00 0.00 2.34
129 130 7.278646 GTCAATGCTACATTCATGAGTCTTACA 59.721 37.037 0.00 0.00 0.00 2.41
130 131 7.989170 TCAATGCTACATTCATGAGTCTTACAT 59.011 33.333 0.00 0.00 0.00 2.29
131 132 7.725818 ATGCTACATTCATGAGTCTTACATG 57.274 36.000 0.00 0.00 44.20 3.21
141 142 7.147976 TCATGAGTCTTACATGAATATCCACG 58.852 38.462 0.00 0.00 46.94 4.94
142 143 5.289595 TGAGTCTTACATGAATATCCACGC 58.710 41.667 0.00 0.00 0.00 5.34
143 144 5.163457 TGAGTCTTACATGAATATCCACGCA 60.163 40.000 0.00 0.00 0.00 5.24
144 145 5.670485 AGTCTTACATGAATATCCACGCAA 58.330 37.500 0.00 0.00 0.00 4.85
145 146 6.112734 AGTCTTACATGAATATCCACGCAAA 58.887 36.000 0.00 0.00 0.00 3.68
146 147 6.597672 AGTCTTACATGAATATCCACGCAAAA 59.402 34.615 0.00 0.00 0.00 2.44
147 148 7.283127 AGTCTTACATGAATATCCACGCAAAAT 59.717 33.333 0.00 0.00 0.00 1.82
148 149 7.915397 GTCTTACATGAATATCCACGCAAAATT 59.085 33.333 0.00 0.00 0.00 1.82
149 150 8.465999 TCTTACATGAATATCCACGCAAAATTT 58.534 29.630 0.00 0.00 0.00 1.82
150 151 8.994429 TTACATGAATATCCACGCAAAATTTT 57.006 26.923 0.00 0.00 0.00 1.82
151 152 7.524294 ACATGAATATCCACGCAAAATTTTC 57.476 32.000 0.00 0.00 0.00 2.29
152 153 7.322664 ACATGAATATCCACGCAAAATTTTCT 58.677 30.769 0.00 0.00 0.00 2.52
153 154 7.818930 ACATGAATATCCACGCAAAATTTTCTT 59.181 29.630 0.00 0.00 0.00 2.52
154 155 8.658609 CATGAATATCCACGCAAAATTTTCTTT 58.341 29.630 0.00 0.00 0.00 2.52
155 156 9.868277 ATGAATATCCACGCAAAATTTTCTTTA 57.132 25.926 0.00 0.00 0.00 1.85
156 157 9.698309 TGAATATCCACGCAAAATTTTCTTTAA 57.302 25.926 0.00 0.00 0.00 1.52
161 162 9.877137 ATCCACGCAAAATTTTCTTTAATTTTC 57.123 25.926 0.00 0.00 42.68 2.29
162 163 9.103861 TCCACGCAAAATTTTCTTTAATTTTCT 57.896 25.926 0.00 0.00 42.68 2.52
163 164 9.715123 CCACGCAAAATTTTCTTTAATTTTCTT 57.285 25.926 0.00 0.00 42.68 2.52
189 190 9.988815 TTCTTTTATAATATGCTCTCTCACTCC 57.011 33.333 0.00 0.00 0.00 3.85
190 191 9.147732 TCTTTTATAATATGCTCTCTCACTCCA 57.852 33.333 0.00 0.00 0.00 3.86
191 192 9.941325 CTTTTATAATATGCTCTCTCACTCCAT 57.059 33.333 0.00 0.00 0.00 3.41
193 194 9.716531 TTTATAATATGCTCTCTCACTCCATTG 57.283 33.333 0.00 0.00 0.00 2.82
194 195 5.883685 AATATGCTCTCTCACTCCATTGA 57.116 39.130 0.00 0.00 0.00 2.57
195 196 3.823281 ATGCTCTCTCACTCCATTGAG 57.177 47.619 0.00 0.00 43.93 3.02
197 198 2.495270 TGCTCTCTCACTCCATTGAGAC 59.505 50.000 0.00 0.00 45.79 3.36
198 199 2.760092 GCTCTCTCACTCCATTGAGACT 59.240 50.000 0.00 0.00 45.79 3.24
199 200 3.181487 GCTCTCTCACTCCATTGAGACTC 60.181 52.174 0.00 0.00 45.79 3.36
200 201 4.272489 CTCTCTCACTCCATTGAGACTCT 58.728 47.826 3.68 0.00 45.79 3.24
201 202 5.436175 CTCTCTCACTCCATTGAGACTCTA 58.564 45.833 3.68 0.00 45.79 2.43
202 203 5.436175 TCTCTCACTCCATTGAGACTCTAG 58.564 45.833 3.68 0.00 45.79 2.43
203 204 5.190726 TCTCTCACTCCATTGAGACTCTAGA 59.809 44.000 3.68 0.00 45.79 2.43
204 205 6.012337 TCTCACTCCATTGAGACTCTAGAT 57.988 41.667 3.68 0.00 45.79 1.98
205 206 6.061441 TCTCACTCCATTGAGACTCTAGATC 58.939 44.000 3.68 0.00 45.79 2.75
206 207 5.760131 TCACTCCATTGAGACTCTAGATCA 58.240 41.667 3.68 0.00 41.42 2.92
207 208 6.372104 TCACTCCATTGAGACTCTAGATCAT 58.628 40.000 3.68 0.00 41.42 2.45
208 209 7.521669 TCACTCCATTGAGACTCTAGATCATA 58.478 38.462 3.68 0.00 41.42 2.15
209 210 7.446931 TCACTCCATTGAGACTCTAGATCATAC 59.553 40.741 3.68 0.00 41.42 2.39
210 211 6.719370 ACTCCATTGAGACTCTAGATCATACC 59.281 42.308 3.68 0.00 41.42 2.73
211 212 6.857848 TCCATTGAGACTCTAGATCATACCT 58.142 40.000 3.68 0.00 0.00 3.08
212 213 6.718912 TCCATTGAGACTCTAGATCATACCTG 59.281 42.308 3.68 0.00 0.00 4.00
213 214 6.071447 CCATTGAGACTCTAGATCATACCTGG 60.071 46.154 3.68 0.00 0.00 4.45
214 215 4.402829 TGAGACTCTAGATCATACCTGGC 58.597 47.826 3.68 0.00 0.00 4.85
215 216 3.761752 GAGACTCTAGATCATACCTGGCC 59.238 52.174 0.00 0.00 0.00 5.36
216 217 3.141083 AGACTCTAGATCATACCTGGCCA 59.859 47.826 4.71 4.71 0.00 5.36
217 218 3.898123 GACTCTAGATCATACCTGGCCAA 59.102 47.826 7.01 0.00 0.00 4.52
218 219 4.298626 ACTCTAGATCATACCTGGCCAAA 58.701 43.478 7.01 0.00 0.00 3.28
219 220 4.101741 ACTCTAGATCATACCTGGCCAAAC 59.898 45.833 7.01 0.00 0.00 2.93
220 221 2.332063 AGATCATACCTGGCCAAACG 57.668 50.000 7.01 0.00 0.00 3.60
221 222 1.134098 AGATCATACCTGGCCAAACGG 60.134 52.381 7.01 7.56 0.00 4.44
222 223 0.106719 ATCATACCTGGCCAAACGGG 60.107 55.000 7.01 7.12 42.81 5.28
260 261 2.895372 CCGCCAGGGCACGATTAC 60.895 66.667 11.42 0.00 42.06 1.89
261 262 2.186903 CGCCAGGGCACGATTACT 59.813 61.111 11.42 0.00 42.06 2.24
262 263 1.440060 CGCCAGGGCACGATTACTA 59.560 57.895 11.42 0.00 42.06 1.82
263 264 0.033504 CGCCAGGGCACGATTACTAT 59.966 55.000 11.42 0.00 42.06 2.12
264 265 1.271379 CGCCAGGGCACGATTACTATA 59.729 52.381 11.42 0.00 42.06 1.31
265 266 2.094182 CGCCAGGGCACGATTACTATAT 60.094 50.000 11.42 0.00 42.06 0.86
266 267 3.262420 GCCAGGGCACGATTACTATATG 58.738 50.000 5.20 0.00 41.49 1.78
267 268 3.861840 CCAGGGCACGATTACTATATGG 58.138 50.000 0.00 0.00 0.00 2.74
268 269 3.369471 CCAGGGCACGATTACTATATGGG 60.369 52.174 0.00 0.00 0.00 4.00
269 270 3.260884 CAGGGCACGATTACTATATGGGT 59.739 47.826 0.00 0.00 0.00 4.51
270 271 3.514309 AGGGCACGATTACTATATGGGTC 59.486 47.826 0.00 0.00 0.00 4.46
271 272 3.508762 GGCACGATTACTATATGGGTCG 58.491 50.000 8.48 8.48 35.42 4.79
272 273 3.057033 GGCACGATTACTATATGGGTCGT 60.057 47.826 9.47 9.47 42.28 4.34
274 275 4.170292 ACGATTACTATATGGGTCGTGC 57.830 45.455 12.92 0.00 40.34 5.34
275 276 3.057033 ACGATTACTATATGGGTCGTGCC 60.057 47.826 12.92 0.00 40.34 5.01
276 277 3.508762 GATTACTATATGGGTCGTGCCG 58.491 50.000 0.00 0.00 38.44 5.69
277 278 1.985473 TACTATATGGGTCGTGCCGT 58.015 50.000 0.00 0.00 38.44 5.68
278 279 0.387929 ACTATATGGGTCGTGCCGTG 59.612 55.000 0.00 0.00 38.44 4.94
279 280 0.944311 CTATATGGGTCGTGCCGTGC 60.944 60.000 0.00 0.00 38.44 5.34
280 281 2.372040 TATATGGGTCGTGCCGTGCC 62.372 60.000 0.00 0.06 38.44 5.01
325 326 4.968370 GGCACGGCCCAATTAGTA 57.032 55.556 0.00 0.00 44.06 1.82
326 327 3.178325 GGCACGGCCCAATTAGTAA 57.822 52.632 0.00 0.00 44.06 2.24
327 328 1.465794 GGCACGGCCCAATTAGTAAA 58.534 50.000 0.00 0.00 44.06 2.01
328 329 1.133598 GGCACGGCCCAATTAGTAAAC 59.866 52.381 0.00 0.00 44.06 2.01
329 330 1.202098 GCACGGCCCAATTAGTAAACG 60.202 52.381 0.00 0.00 0.00 3.60
330 331 1.399089 CACGGCCCAATTAGTAAACGG 59.601 52.381 0.00 0.00 0.00 4.44
331 332 1.018910 CGGCCCAATTAGTAAACGGG 58.981 55.000 13.40 13.40 40.11 5.28
334 335 1.018910 CCCAATTAGTAAACGGGCCG 58.981 55.000 27.06 27.06 0.00 6.13
335 336 1.018910 CCAATTAGTAAACGGGCCGG 58.981 55.000 31.78 12.53 0.00 6.13
336 337 0.379316 CAATTAGTAAACGGGCCGGC 59.621 55.000 31.78 21.18 0.00 6.13
337 338 0.035247 AATTAGTAAACGGGCCGGCA 60.035 50.000 31.78 11.85 0.00 5.69
338 339 0.745486 ATTAGTAAACGGGCCGGCAC 60.745 55.000 31.78 26.77 0.00 5.01
352 353 2.559330 GCACGTTGGCCCGTTTAG 59.441 61.111 4.13 0.00 39.45 1.85
353 354 2.559330 CACGTTGGCCCGTTTAGC 59.441 61.111 4.13 0.00 39.45 3.09
354 355 2.111460 ACGTTGGCCCGTTTAGCA 59.889 55.556 0.00 0.00 37.96 3.49
355 356 1.302993 ACGTTGGCCCGTTTAGCAT 60.303 52.632 0.00 0.00 37.96 3.79
356 357 1.136565 CGTTGGCCCGTTTAGCATG 59.863 57.895 0.00 0.00 0.00 4.06
357 358 1.510844 GTTGGCCCGTTTAGCATGG 59.489 57.895 0.00 0.00 0.00 3.66
358 359 1.075836 TTGGCCCGTTTAGCATGGT 59.924 52.632 0.00 1.62 0.00 3.55
359 360 1.247419 TTGGCCCGTTTAGCATGGTG 61.247 55.000 7.89 0.00 0.00 4.17
360 361 2.414785 GGCCCGTTTAGCATGGTGG 61.415 63.158 7.89 0.25 0.00 4.61
361 362 2.414785 GCCCGTTTAGCATGGTGGG 61.415 63.158 12.56 12.56 39.72 4.61
362 363 2.414785 CCCGTTTAGCATGGTGGGC 61.415 63.158 7.89 0.00 0.00 5.36
363 364 2.414785 CCGTTTAGCATGGTGGGCC 61.415 63.158 7.89 0.00 0.00 5.80
364 365 2.760159 CGTTTAGCATGGTGGGCCG 61.760 63.158 7.89 0.80 37.67 6.13
365 366 2.753849 TTTAGCATGGTGGGCCGC 60.754 61.111 9.05 9.05 37.67 6.53
366 367 3.575703 TTTAGCATGGTGGGCCGCA 62.576 57.895 20.39 5.52 37.67 5.69
367 368 2.852563 TTTAGCATGGTGGGCCGCAT 62.853 55.000 20.39 7.78 37.67 4.73
368 369 1.988982 TTAGCATGGTGGGCCGCATA 61.989 55.000 20.39 7.63 37.67 3.14
369 370 1.778017 TAGCATGGTGGGCCGCATAT 61.778 55.000 20.39 9.81 37.67 1.78
370 371 2.202395 GCATGGTGGGCCGCATATT 61.202 57.895 20.39 0.00 37.67 1.28
371 372 1.747325 GCATGGTGGGCCGCATATTT 61.747 55.000 20.39 0.00 37.67 1.40
372 373 0.752054 CATGGTGGGCCGCATATTTT 59.248 50.000 20.39 0.00 37.67 1.82
373 374 1.039856 ATGGTGGGCCGCATATTTTC 58.960 50.000 20.39 0.00 37.67 2.29
374 375 0.323816 TGGTGGGCCGCATATTTTCA 60.324 50.000 20.39 2.36 37.67 2.69
375 376 0.385390 GGTGGGCCGCATATTTTCAG 59.615 55.000 20.39 0.00 0.00 3.02
376 377 1.102978 GTGGGCCGCATATTTTCAGT 58.897 50.000 13.30 0.00 0.00 3.41
377 378 1.065551 GTGGGCCGCATATTTTCAGTC 59.934 52.381 13.30 0.00 0.00 3.51
378 379 1.064758 TGGGCCGCATATTTTCAGTCT 60.065 47.619 0.00 0.00 0.00 3.24
379 380 2.171659 TGGGCCGCATATTTTCAGTCTA 59.828 45.455 0.00 0.00 0.00 2.59
380 381 3.181445 TGGGCCGCATATTTTCAGTCTAT 60.181 43.478 0.00 0.00 0.00 1.98
381 382 3.821033 GGGCCGCATATTTTCAGTCTATT 59.179 43.478 0.00 0.00 0.00 1.73
382 383 5.001232 GGGCCGCATATTTTCAGTCTATTA 58.999 41.667 0.00 0.00 0.00 0.98
383 384 5.648092 GGGCCGCATATTTTCAGTCTATTAT 59.352 40.000 0.00 0.00 0.00 1.28
384 385 6.151144 GGGCCGCATATTTTCAGTCTATTATT 59.849 38.462 0.00 0.00 0.00 1.40
385 386 7.309194 GGGCCGCATATTTTCAGTCTATTATTT 60.309 37.037 0.00 0.00 0.00 1.40
386 387 7.538678 GGCCGCATATTTTCAGTCTATTATTTG 59.461 37.037 0.00 0.00 0.00 2.32
387 388 8.289618 GCCGCATATTTTCAGTCTATTATTTGA 58.710 33.333 0.00 0.00 0.00 2.69
388 389 9.599322 CCGCATATTTTCAGTCTATTATTTGAC 57.401 33.333 0.00 0.00 0.00 3.18
389 390 9.306280 CGCATATTTTCAGTCTATTATTTGACG 57.694 33.333 0.00 0.00 38.16 4.35
390 391 9.107367 GCATATTTTCAGTCTATTATTTGACGC 57.893 33.333 0.00 0.00 38.16 5.19
393 394 7.667043 TTTTCAGTCTATTATTTGACGCACT 57.333 32.000 0.00 0.00 38.16 4.40
394 395 6.647212 TTCAGTCTATTATTTGACGCACTG 57.353 37.500 0.00 0.00 38.16 3.66
395 396 5.961272 TCAGTCTATTATTTGACGCACTGA 58.039 37.500 0.00 0.00 37.32 3.41
396 397 6.036470 TCAGTCTATTATTTGACGCACTGAG 58.964 40.000 0.00 0.00 35.29 3.35
397 398 4.806247 AGTCTATTATTTGACGCACTGAGC 59.194 41.667 0.00 0.00 38.16 4.26
475 476 7.883229 AAAAATAAAACTTAATCAGGCCGTG 57.117 32.000 0.00 0.00 0.00 4.94
476 477 6.584185 AAATAAAACTTAATCAGGCCGTGT 57.416 33.333 0.00 0.00 0.00 4.49
477 478 5.813080 ATAAAACTTAATCAGGCCGTGTC 57.187 39.130 0.00 0.00 0.00 3.67
478 479 1.722011 AACTTAATCAGGCCGTGTCG 58.278 50.000 0.00 0.00 0.00 4.35
479 480 0.606604 ACTTAATCAGGCCGTGTCGT 59.393 50.000 0.00 0.00 0.00 4.34
480 481 0.999406 CTTAATCAGGCCGTGTCGTG 59.001 55.000 0.00 0.00 0.00 4.35
481 482 1.017177 TTAATCAGGCCGTGTCGTGC 61.017 55.000 0.00 0.00 0.00 5.34
482 483 2.845752 TAATCAGGCCGTGTCGTGCC 62.846 60.000 0.00 11.52 41.19 5.01
558 559 4.404098 CCAGCCCGTTTAGCCCGT 62.404 66.667 0.00 0.00 0.00 5.28
559 560 3.124921 CAGCCCGTTTAGCCCGTG 61.125 66.667 0.00 0.00 0.00 4.94
564 565 3.784412 CGTTTAGCCCGTGCCGTG 61.784 66.667 0.00 0.00 38.69 4.94
565 566 4.097863 GTTTAGCCCGTGCCGTGC 62.098 66.667 0.00 0.00 38.69 5.34
599 600 4.246206 CATGCCGGCATGCTCACG 62.246 66.667 46.27 28.25 45.71 4.35
639 640 2.664402 CCCATTTGGCCAGCTATACT 57.336 50.000 5.11 0.00 0.00 2.12
652 653 5.257262 CCAGCTATACTCTAGATGTAGCCA 58.743 45.833 19.43 5.14 38.76 4.75
660 661 2.766263 TCTAGATGTAGCCACACCCTTG 59.234 50.000 0.00 0.00 37.54 3.61
772 777 4.388499 GAAGGGAAGCCGGTCGCA 62.388 66.667 1.90 0.00 41.38 5.10
863 884 4.899239 CGCCTCACCCAGATCCGC 62.899 72.222 0.00 0.00 0.00 5.54
864 885 4.899239 GCCTCACCCAGATCCGCG 62.899 72.222 0.00 0.00 0.00 6.46
865 886 3.461773 CCTCACCCAGATCCGCGT 61.462 66.667 4.92 0.00 0.00 6.01
866 887 2.105128 CTCACCCAGATCCGCGTC 59.895 66.667 4.92 0.00 0.00 5.19
867 888 3.432051 CTCACCCAGATCCGCGTCC 62.432 68.421 4.92 0.00 0.00 4.79
868 889 4.530857 CACCCAGATCCGCGTCCC 62.531 72.222 4.92 0.00 0.00 4.46
971 1012 3.119709 GAGAGAGACAGCCGAGCCG 62.120 68.421 0.00 0.00 0.00 5.52
972 1013 3.134792 GAGAGACAGCCGAGCCGA 61.135 66.667 0.00 0.00 0.00 5.54
1100 1424 0.723289 ACCCCTCTAAACCCTAGCCT 59.277 55.000 0.00 0.00 0.00 4.58
1104 1428 0.389757 CTCTAAACCCTAGCCTCCGC 59.610 60.000 0.00 0.00 0.00 5.54
1105 1429 1.067582 CTAAACCCTAGCCTCCGCG 59.932 63.158 0.00 0.00 41.18 6.46
1106 1430 2.365095 CTAAACCCTAGCCTCCGCGG 62.365 65.000 22.12 22.12 41.18 6.46
1468 1793 0.105964 CGGAGATGGAGGAGGAGGAA 60.106 60.000 0.00 0.00 0.00 3.36
1469 1794 1.715785 GGAGATGGAGGAGGAGGAAG 58.284 60.000 0.00 0.00 0.00 3.46
1470 1795 1.219213 GGAGATGGAGGAGGAGGAAGA 59.781 57.143 0.00 0.00 0.00 2.87
1471 1796 2.597455 GAGATGGAGGAGGAGGAAGAG 58.403 57.143 0.00 0.00 0.00 2.85
1472 1797 1.220236 AGATGGAGGAGGAGGAAGAGG 59.780 57.143 0.00 0.00 0.00 3.69
1473 1798 1.219213 GATGGAGGAGGAGGAAGAGGA 59.781 57.143 0.00 0.00 0.00 3.71
1474 1799 0.633921 TGGAGGAGGAGGAAGAGGAG 59.366 60.000 0.00 0.00 0.00 3.69
1859 2193 3.856508 GCGAGCGAGCTAACAACA 58.143 55.556 0.00 0.00 0.00 3.33
1875 2209 2.158971 ACAACATTTCCACTTTGTGCCC 60.159 45.455 0.00 0.00 30.99 5.36
1893 2231 1.592131 CGGTGTCCGTTCCGTTCAA 60.592 57.895 0.00 0.00 42.73 2.69
1916 2254 0.743345 GGGGGTCATTTCTCCGTTCG 60.743 60.000 0.00 0.00 0.00 3.95
1917 2255 0.036671 GGGGTCATTTCTCCGTTCGT 60.037 55.000 0.00 0.00 0.00 3.85
1950 2288 0.250597 TCGAGGTGGAAGACGAGACA 60.251 55.000 0.00 0.00 0.00 3.41
1952 2290 1.401670 CGAGGTGGAAGACGAGACAAG 60.402 57.143 0.00 0.00 0.00 3.16
1953 2291 1.887198 GAGGTGGAAGACGAGACAAGA 59.113 52.381 0.00 0.00 0.00 3.02
1955 2293 1.666311 GGTGGAAGACGAGACAAGACG 60.666 57.143 0.00 0.00 0.00 4.18
1956 2294 1.266175 GTGGAAGACGAGACAAGACGA 59.734 52.381 0.00 0.00 0.00 4.20
1957 2295 1.535896 TGGAAGACGAGACAAGACGAG 59.464 52.381 0.00 0.00 0.00 4.18
2001 2339 1.841277 AGTGTGGGTGGTGTTTCAGTA 59.159 47.619 0.00 0.00 0.00 2.74
2098 2442 0.917259 GCGCACACTTAGTCGATCAG 59.083 55.000 0.30 0.00 0.00 2.90
2107 2451 3.128938 ACTTAGTCGATCAGTTCCTTCCG 59.871 47.826 0.00 0.00 0.00 4.30
2136 2480 4.803426 CCACGAGCTGAGGCGTCC 62.803 72.222 3.56 0.00 44.37 4.79
2206 2552 7.144661 AGCGTGAATCACATTGATTTTTGTTA 58.855 30.769 14.24 0.00 46.20 2.41
2218 2564 9.734620 CATTGATTTTTGTTACTTCTGACTTCA 57.265 29.630 0.00 0.00 0.00 3.02
2233 2579 4.739793 TGACTTCAATCTCCCATGGTTTT 58.260 39.130 11.73 0.00 0.00 2.43
2234 2580 5.147032 TGACTTCAATCTCCCATGGTTTTT 58.853 37.500 11.73 0.00 0.00 1.94
2241 2587 0.676736 TCCCATGGTTTTTCGGTTGC 59.323 50.000 11.73 0.00 0.00 4.17
2409 2765 1.669115 CGCTGTGGTGTTCTCTGGG 60.669 63.158 0.00 0.00 0.00 4.45
2456 2812 3.455177 ACAGAATCTGGTGATCTGCTGAT 59.545 43.478 15.38 5.69 35.51 2.90
2464 2820 1.146930 GATCTGCTGATGCGGGGAA 59.853 57.895 11.21 0.00 45.25 3.97
2468 2824 4.838152 GCTGATGCGGGGAAGCGA 62.838 66.667 0.00 0.00 40.67 4.93
2485 2860 1.903890 GATCCCGGAGAGGCGATCA 60.904 63.158 0.73 0.00 41.92 2.92
2502 2889 3.121030 AGATGCTGTTGCGACGCC 61.121 61.111 18.69 2.90 43.34 5.68
2509 2896 1.674611 CTGTTGCGACGCCGAAGTAG 61.675 60.000 18.69 3.84 38.22 2.57
2510 2897 2.807895 TTGCGACGCCGAAGTAGC 60.808 61.111 18.69 7.99 41.96 3.58
2513 2900 3.248171 CGACGCCGAAGTAGCAGC 61.248 66.667 0.00 0.00 38.22 5.25
2514 2901 2.126071 GACGCCGAAGTAGCAGCA 60.126 61.111 0.00 0.00 0.00 4.41
2516 2903 2.125912 CGCCGAAGTAGCAGCAGT 60.126 61.111 0.00 0.00 0.00 4.40
2517 2904 2.161486 CGCCGAAGTAGCAGCAGTC 61.161 63.158 0.00 0.00 0.00 3.51
2518 2905 1.079819 GCCGAAGTAGCAGCAGTCA 60.080 57.895 0.00 0.00 0.00 3.41
2519 2906 0.460987 GCCGAAGTAGCAGCAGTCAT 60.461 55.000 0.00 0.00 0.00 3.06
2520 2907 1.202417 GCCGAAGTAGCAGCAGTCATA 60.202 52.381 0.00 0.00 0.00 2.15
2522 2909 2.099921 CCGAAGTAGCAGCAGTCATACT 59.900 50.000 0.00 0.00 0.00 2.12
2523 2910 3.367607 CGAAGTAGCAGCAGTCATACTC 58.632 50.000 0.00 0.00 0.00 2.59
2524 2911 3.712187 GAAGTAGCAGCAGTCATACTCC 58.288 50.000 0.00 0.00 0.00 3.85
2525 2912 3.025322 AGTAGCAGCAGTCATACTCCT 57.975 47.619 0.00 0.00 0.00 3.69
2526 2913 4.171878 AGTAGCAGCAGTCATACTCCTA 57.828 45.455 0.00 0.00 0.00 2.94
2527 2914 4.141287 AGTAGCAGCAGTCATACTCCTAG 58.859 47.826 0.00 0.00 0.00 3.02
2528 2915 2.315176 AGCAGCAGTCATACTCCTAGG 58.685 52.381 0.82 0.82 0.00 3.02
2529 2916 2.035632 GCAGCAGTCATACTCCTAGGT 58.964 52.381 9.08 0.00 0.00 3.08
2530 2917 2.432510 GCAGCAGTCATACTCCTAGGTT 59.567 50.000 9.08 0.00 0.00 3.50
2531 2918 3.739519 GCAGCAGTCATACTCCTAGGTTG 60.740 52.174 9.08 5.84 0.00 3.77
2532 2919 3.449018 CAGCAGTCATACTCCTAGGTTGT 59.551 47.826 9.08 11.57 0.00 3.32
2533 2920 4.081420 CAGCAGTCATACTCCTAGGTTGTT 60.081 45.833 9.08 0.00 0.00 2.83
2581 2977 0.464870 CAGGTGGAGAGAGATGGCTG 59.535 60.000 0.00 0.00 0.00 4.85
2582 2978 0.337773 AGGTGGAGAGAGATGGCTGA 59.662 55.000 0.00 0.00 0.00 4.26
2583 2979 0.752054 GGTGGAGAGAGATGGCTGAG 59.248 60.000 0.00 0.00 0.00 3.35
2617 3013 1.971505 CTGGGCTCCGGTGCTTATCA 61.972 60.000 26.25 17.57 0.00 2.15
2629 3030 3.629398 GGTGCTTATCATCTGGTCAAAGG 59.371 47.826 0.00 0.00 0.00 3.11
2642 3043 2.490902 GGTCAAAGGGTGGTTCAATCCT 60.491 50.000 0.00 0.00 0.00 3.24
2643 3044 2.820197 GTCAAAGGGTGGTTCAATCCTC 59.180 50.000 0.00 0.00 0.00 3.71
2647 3048 2.348472 AGGGTGGTTCAATCCTCTTCA 58.652 47.619 0.00 0.00 0.00 3.02
2685 3092 3.184683 GCTGAGTTCGAGCTGCCG 61.185 66.667 6.48 0.00 33.37 5.69
2731 3138 1.949847 ATCCGGTGCTGAGTTCGAGG 61.950 60.000 0.00 0.00 0.00 4.63
2737 3144 1.515304 GCTGAGTTCGAGGCGAGTC 60.515 63.158 0.00 0.00 37.14 3.36
2761 3168 0.793853 GCGTCGTCTTCTTCCTCGTC 60.794 60.000 0.00 0.00 0.00 4.20
2763 3170 0.879765 GTCGTCTTCTTCCTCGTCCA 59.120 55.000 0.00 0.00 0.00 4.02
2775 3182 1.426041 CTCGTCCATTTAACCGGCGG 61.426 60.000 27.06 27.06 0.00 6.13
2795 3206 1.079543 CCTGTCCGGCTTGAGAGTG 60.080 63.158 0.00 0.00 0.00 3.51
2796 3207 1.079543 CTGTCCGGCTTGAGAGTGG 60.080 63.158 0.00 0.00 0.00 4.00
2797 3208 1.533033 TGTCCGGCTTGAGAGTGGA 60.533 57.895 0.00 0.00 0.00 4.02
2798 3209 1.216710 GTCCGGCTTGAGAGTGGAG 59.783 63.158 0.00 0.00 32.54 3.86
2799 3210 1.076727 TCCGGCTTGAGAGTGGAGA 59.923 57.895 0.00 0.00 0.00 3.71
2800 3211 0.967887 TCCGGCTTGAGAGTGGAGAG 60.968 60.000 0.00 0.00 0.00 3.20
2801 3212 0.967887 CCGGCTTGAGAGTGGAGAGA 60.968 60.000 0.00 0.00 0.00 3.10
2802 3213 1.110442 CGGCTTGAGAGTGGAGAGAT 58.890 55.000 0.00 0.00 0.00 2.75
2803 3214 1.066908 CGGCTTGAGAGTGGAGAGATC 59.933 57.143 0.00 0.00 0.00 2.75
2804 3215 1.066908 GGCTTGAGAGTGGAGAGATCG 59.933 57.143 0.00 0.00 0.00 3.69
2805 3216 1.535860 GCTTGAGAGTGGAGAGATCGC 60.536 57.143 0.00 0.00 0.00 4.58
2806 3217 2.023673 CTTGAGAGTGGAGAGATCGCT 58.976 52.381 0.00 0.00 0.00 4.93
2807 3218 1.387539 TGAGAGTGGAGAGATCGCTG 58.612 55.000 2.76 0.00 0.00 5.18
2808 3219 0.667993 GAGAGTGGAGAGATCGCTGG 59.332 60.000 2.76 0.00 0.00 4.85
2809 3220 1.067250 GAGTGGAGAGATCGCTGGC 59.933 63.158 2.76 0.00 0.00 4.85
2810 3221 2.107953 GTGGAGAGATCGCTGGCC 59.892 66.667 2.76 0.00 0.00 5.36
2811 3222 2.042537 TGGAGAGATCGCTGGCCT 60.043 61.111 2.76 0.00 0.00 5.19
2812 3223 2.130426 TGGAGAGATCGCTGGCCTC 61.130 63.158 2.76 0.00 0.00 4.70
2813 3224 2.334653 GAGAGATCGCTGGCCTCG 59.665 66.667 2.76 8.08 32.52 4.63
2814 3225 2.124109 AGAGATCGCTGGCCTCGA 60.124 61.111 19.81 19.81 40.45 4.04
2815 3226 2.128853 GAGAGATCGCTGGCCTCGAG 62.129 65.000 21.44 5.13 39.47 4.04
2816 3227 2.124109 AGATCGCTGGCCTCGAGA 60.124 61.111 15.71 12.70 39.47 4.04
2817 3228 1.523154 GAGATCGCTGGCCTCGAGAT 61.523 60.000 15.71 16.25 39.47 2.75
2818 3229 0.250945 AGATCGCTGGCCTCGAGATA 60.251 55.000 15.71 0.00 39.47 1.98
2819 3230 0.170116 GATCGCTGGCCTCGAGATAG 59.830 60.000 15.71 9.90 39.47 2.08
2820 3231 1.872197 ATCGCTGGCCTCGAGATAGC 61.872 60.000 15.71 17.96 39.47 2.97
2821 3232 2.560119 CGCTGGCCTCGAGATAGCT 61.560 63.158 23.44 0.00 32.43 3.32
2822 3233 1.745264 GCTGGCCTCGAGATAGCTT 59.255 57.895 15.71 0.00 0.00 3.74
2823 3234 0.319469 GCTGGCCTCGAGATAGCTTC 60.319 60.000 15.71 0.00 0.00 3.86
2824 3235 0.039617 CTGGCCTCGAGATAGCTTCG 60.040 60.000 15.71 0.00 0.00 3.79
2825 3236 1.287503 GGCCTCGAGATAGCTTCGG 59.712 63.158 15.71 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.686438 TTACATACTACAGTGTTCGAACCTA 57.314 36.000 24.78 4.95 0.00 3.08
1 2 6.579666 TTACATACTACAGTGTTCGAACCT 57.420 37.500 24.78 17.73 0.00 3.50
2 3 8.400947 TCTATTACATACTACAGTGTTCGAACC 58.599 37.037 24.78 15.84 0.00 3.62
3 4 9.435802 CTCTATTACATACTACAGTGTTCGAAC 57.564 37.037 21.42 21.42 0.00 3.95
4 5 9.387257 TCTCTATTACATACTACAGTGTTCGAA 57.613 33.333 0.00 0.00 0.00 3.71
5 6 8.953368 TCTCTATTACATACTACAGTGTTCGA 57.047 34.615 0.00 0.00 0.00 3.71
6 7 9.653067 CTTCTCTATTACATACTACAGTGTTCG 57.347 37.037 0.00 0.00 0.00 3.95
7 8 9.453325 GCTTCTCTATTACATACTACAGTGTTC 57.547 37.037 0.00 0.00 0.00 3.18
8 9 8.967918 TGCTTCTCTATTACATACTACAGTGTT 58.032 33.333 0.00 0.00 0.00 3.32
9 10 8.521170 TGCTTCTCTATTACATACTACAGTGT 57.479 34.615 0.00 0.00 0.00 3.55
10 11 9.803315 TTTGCTTCTCTATTACATACTACAGTG 57.197 33.333 0.00 0.00 0.00 3.66
33 34 2.253603 GCTCGCCAGCAACTTTATTTG 58.746 47.619 0.00 0.00 46.06 2.32
34 35 2.636768 GCTCGCCAGCAACTTTATTT 57.363 45.000 0.00 0.00 46.06 1.40
45 46 1.543802 CTAATCTAGGGAGCTCGCCAG 59.456 57.143 25.68 21.80 0.00 4.85
46 47 1.621992 CTAATCTAGGGAGCTCGCCA 58.378 55.000 25.68 12.94 0.00 5.69
47 48 0.245266 GCTAATCTAGGGAGCTCGCC 59.755 60.000 25.68 18.48 33.28 5.54
48 49 1.253100 AGCTAATCTAGGGAGCTCGC 58.747 55.000 22.44 22.44 42.97 5.03
49 50 3.945346 TCTAGCTAATCTAGGGAGCTCG 58.055 50.000 14.68 10.43 42.97 5.03
50 51 6.850752 AAATCTAGCTAATCTAGGGAGCTC 57.149 41.667 14.68 4.71 42.97 4.09
52 53 7.445945 TGAAAAATCTAGCTAATCTAGGGAGC 58.554 38.462 0.00 3.95 43.93 4.70
53 54 9.434420 CATGAAAAATCTAGCTAATCTAGGGAG 57.566 37.037 0.00 0.00 43.93 4.30
54 55 9.159254 TCATGAAAAATCTAGCTAATCTAGGGA 57.841 33.333 0.00 0.00 43.93 4.20
55 56 9.213799 GTCATGAAAAATCTAGCTAATCTAGGG 57.786 37.037 0.00 0.00 43.93 3.53
56 57 9.995003 AGTCATGAAAAATCTAGCTAATCTAGG 57.005 33.333 0.00 0.00 43.93 3.02
58 59 9.988815 GGAGTCATGAAAAATCTAGCTAATCTA 57.011 33.333 0.00 0.00 0.00 1.98
59 60 8.713036 AGGAGTCATGAAAAATCTAGCTAATCT 58.287 33.333 0.00 0.00 0.00 2.40
60 61 8.772705 CAGGAGTCATGAAAAATCTAGCTAATC 58.227 37.037 0.00 0.00 0.00 1.75
61 62 8.489489 TCAGGAGTCATGAAAAATCTAGCTAAT 58.511 33.333 4.72 0.00 0.00 1.73
62 63 7.851228 TCAGGAGTCATGAAAAATCTAGCTAA 58.149 34.615 4.72 0.00 0.00 3.09
63 64 7.124901 ACTCAGGAGTCATGAAAAATCTAGCTA 59.875 37.037 9.06 0.00 36.92 3.32
64 65 6.070309 ACTCAGGAGTCATGAAAAATCTAGCT 60.070 38.462 9.06 0.00 36.92 3.32
65 66 6.112058 ACTCAGGAGTCATGAAAAATCTAGC 58.888 40.000 9.06 0.00 36.92 3.42
80 81 0.820871 GGCTTGATCGACTCAGGAGT 59.179 55.000 0.70 0.70 45.84 3.85
81 82 1.066908 GAGGCTTGATCGACTCAGGAG 59.933 57.143 9.89 0.00 38.95 3.69
82 83 1.107114 GAGGCTTGATCGACTCAGGA 58.893 55.000 9.89 0.00 38.95 3.86
83 84 0.820226 TGAGGCTTGATCGACTCAGG 59.180 55.000 2.28 0.00 43.90 3.86
85 86 1.474478 GACTGAGGCTTGATCGACTCA 59.526 52.381 6.07 6.07 46.46 3.41
86 87 1.474478 TGACTGAGGCTTGATCGACTC 59.526 52.381 0.00 0.00 39.58 3.36
87 88 1.550327 TGACTGAGGCTTGATCGACT 58.450 50.000 0.00 0.00 0.00 4.18
88 89 2.370281 TTGACTGAGGCTTGATCGAC 57.630 50.000 0.00 0.00 0.00 4.20
89 90 2.897436 CATTGACTGAGGCTTGATCGA 58.103 47.619 0.00 0.00 0.00 3.59
90 91 1.329906 GCATTGACTGAGGCTTGATCG 59.670 52.381 0.00 0.00 0.00 3.69
91 92 2.641305 AGCATTGACTGAGGCTTGATC 58.359 47.619 0.00 0.00 31.34 2.92
92 93 2.803030 AGCATTGACTGAGGCTTGAT 57.197 45.000 0.00 0.00 31.34 2.57
93 94 2.302733 TGTAGCATTGACTGAGGCTTGA 59.697 45.455 0.00 0.00 37.79 3.02
94 95 2.703416 TGTAGCATTGACTGAGGCTTG 58.297 47.619 0.00 0.00 37.79 4.01
95 96 3.641434 ATGTAGCATTGACTGAGGCTT 57.359 42.857 0.00 0.00 37.79 4.35
96 97 3.054875 TGAATGTAGCATTGACTGAGGCT 60.055 43.478 0.00 0.00 40.26 4.58
97 98 3.273434 TGAATGTAGCATTGACTGAGGC 58.727 45.455 0.00 0.00 0.00 4.70
98 99 5.121105 TCATGAATGTAGCATTGACTGAGG 58.879 41.667 0.00 0.00 0.00 3.86
99 100 5.816258 ACTCATGAATGTAGCATTGACTGAG 59.184 40.000 15.59 15.59 0.00 3.35
100 101 5.737860 ACTCATGAATGTAGCATTGACTGA 58.262 37.500 0.00 0.00 0.00 3.41
101 102 5.816258 AGACTCATGAATGTAGCATTGACTG 59.184 40.000 0.00 0.00 0.00 3.51
102 103 5.987098 AGACTCATGAATGTAGCATTGACT 58.013 37.500 0.00 0.00 0.00 3.41
103 104 6.674694 AAGACTCATGAATGTAGCATTGAC 57.325 37.500 0.00 0.00 0.00 3.18
104 105 7.330262 TGTAAGACTCATGAATGTAGCATTGA 58.670 34.615 0.00 0.00 0.00 2.57
105 106 7.543947 TGTAAGACTCATGAATGTAGCATTG 57.456 36.000 0.00 0.00 0.00 2.82
106 107 7.989170 TCATGTAAGACTCATGAATGTAGCATT 59.011 33.333 4.73 0.00 45.40 3.56
107 108 7.503549 TCATGTAAGACTCATGAATGTAGCAT 58.496 34.615 4.73 0.00 45.40 3.79
108 109 6.877236 TCATGTAAGACTCATGAATGTAGCA 58.123 36.000 4.73 0.00 45.40 3.49
116 117 7.147976 CGTGGATATTCATGTAAGACTCATGA 58.852 38.462 3.34 3.34 46.28 3.07
117 118 6.128715 GCGTGGATATTCATGTAAGACTCATG 60.129 42.308 5.10 0.00 42.53 3.07
118 119 5.928839 GCGTGGATATTCATGTAAGACTCAT 59.071 40.000 5.10 0.00 0.00 2.90
119 120 5.163457 TGCGTGGATATTCATGTAAGACTCA 60.163 40.000 5.10 0.00 0.00 3.41
120 121 5.289595 TGCGTGGATATTCATGTAAGACTC 58.710 41.667 5.10 0.00 0.00 3.36
121 122 5.276461 TGCGTGGATATTCATGTAAGACT 57.724 39.130 5.10 0.00 0.00 3.24
122 123 5.984233 TTGCGTGGATATTCATGTAAGAC 57.016 39.130 2.81 0.00 0.00 3.01
123 124 6.993786 TTTTGCGTGGATATTCATGTAAGA 57.006 33.333 6.80 0.73 31.79 2.10
124 125 8.633075 AAATTTTGCGTGGATATTCATGTAAG 57.367 30.769 6.80 0.00 31.79 2.34
125 126 8.994429 AAAATTTTGCGTGGATATTCATGTAA 57.006 26.923 1.75 2.81 0.00 2.41
126 127 8.465999 AGAAAATTTTGCGTGGATATTCATGTA 58.534 29.630 8.47 0.00 0.00 2.29
127 128 7.322664 AGAAAATTTTGCGTGGATATTCATGT 58.677 30.769 8.47 0.00 0.00 3.21
128 129 7.760131 AGAAAATTTTGCGTGGATATTCATG 57.240 32.000 8.47 0.00 0.00 3.07
129 130 8.776376 AAAGAAAATTTTGCGTGGATATTCAT 57.224 26.923 8.47 0.00 0.00 2.57
130 131 9.698309 TTAAAGAAAATTTTGCGTGGATATTCA 57.302 25.926 8.47 0.00 0.00 2.57
135 136 9.877137 GAAAATTAAAGAAAATTTTGCGTGGAT 57.123 25.926 8.47 0.00 44.84 3.41
136 137 9.103861 AGAAAATTAAAGAAAATTTTGCGTGGA 57.896 25.926 8.47 0.00 44.84 4.02
137 138 9.715123 AAGAAAATTAAAGAAAATTTTGCGTGG 57.285 25.926 8.47 0.00 44.84 4.94
163 164 9.988815 GGAGTGAGAGAGCATATTATAAAAGAA 57.011 33.333 0.00 0.00 0.00 2.52
164 165 9.147732 TGGAGTGAGAGAGCATATTATAAAAGA 57.852 33.333 0.00 0.00 0.00 2.52
165 166 9.941325 ATGGAGTGAGAGAGCATATTATAAAAG 57.059 33.333 0.00 0.00 0.00 2.27
167 168 9.716531 CAATGGAGTGAGAGAGCATATTATAAA 57.283 33.333 0.00 0.00 0.00 1.40
168 169 9.093458 TCAATGGAGTGAGAGAGCATATTATAA 57.907 33.333 0.00 0.00 0.00 0.98
169 170 8.655935 TCAATGGAGTGAGAGAGCATATTATA 57.344 34.615 0.00 0.00 0.00 0.98
170 171 7.550597 TCAATGGAGTGAGAGAGCATATTAT 57.449 36.000 0.00 0.00 0.00 1.28
171 172 6.983906 TCAATGGAGTGAGAGAGCATATTA 57.016 37.500 0.00 0.00 0.00 0.98
172 173 5.856156 CTCAATGGAGTGAGAGAGCATATT 58.144 41.667 0.00 0.00 46.76 1.28
173 174 5.471556 CTCAATGGAGTGAGAGAGCATAT 57.528 43.478 0.00 0.00 46.76 1.78
174 175 4.933505 CTCAATGGAGTGAGAGAGCATA 57.066 45.455 0.00 0.00 46.76 3.14
175 176 3.823281 CTCAATGGAGTGAGAGAGCAT 57.177 47.619 0.00 0.00 46.76 3.79
182 183 5.827267 TGATCTAGAGTCTCAATGGAGTGAG 59.173 44.000 0.00 0.00 45.44 3.51
183 184 5.760131 TGATCTAGAGTCTCAATGGAGTGA 58.240 41.667 0.00 0.00 42.05 3.41
184 185 6.653526 ATGATCTAGAGTCTCAATGGAGTG 57.346 41.667 0.00 0.00 42.05 3.51
185 186 6.719370 GGTATGATCTAGAGTCTCAATGGAGT 59.281 42.308 0.00 0.00 42.05 3.85
186 187 6.947733 AGGTATGATCTAGAGTCTCAATGGAG 59.052 42.308 0.00 0.00 42.80 3.86
187 188 6.718912 CAGGTATGATCTAGAGTCTCAATGGA 59.281 42.308 0.00 0.00 0.00 3.41
188 189 6.071447 CCAGGTATGATCTAGAGTCTCAATGG 60.071 46.154 0.00 2.33 0.00 3.16
189 190 6.572119 GCCAGGTATGATCTAGAGTCTCAATG 60.572 46.154 0.00 0.00 0.00 2.82
190 191 5.480073 GCCAGGTATGATCTAGAGTCTCAAT 59.520 44.000 0.00 0.00 0.00 2.57
191 192 4.830046 GCCAGGTATGATCTAGAGTCTCAA 59.170 45.833 0.00 0.00 0.00 3.02
192 193 4.402829 GCCAGGTATGATCTAGAGTCTCA 58.597 47.826 0.00 0.00 0.00 3.27
193 194 3.761752 GGCCAGGTATGATCTAGAGTCTC 59.238 52.174 0.00 0.00 0.00 3.36
194 195 3.141083 TGGCCAGGTATGATCTAGAGTCT 59.859 47.826 0.00 0.00 0.00 3.24
195 196 3.501349 TGGCCAGGTATGATCTAGAGTC 58.499 50.000 0.00 0.00 0.00 3.36
196 197 3.619900 TGGCCAGGTATGATCTAGAGT 57.380 47.619 0.00 0.00 0.00 3.24
197 198 4.636249 GTTTGGCCAGGTATGATCTAGAG 58.364 47.826 5.11 0.00 0.00 2.43
198 199 3.069586 CGTTTGGCCAGGTATGATCTAGA 59.930 47.826 5.11 0.00 0.00 2.43
199 200 3.393800 CGTTTGGCCAGGTATGATCTAG 58.606 50.000 5.11 0.00 0.00 2.43
200 201 2.104111 CCGTTTGGCCAGGTATGATCTA 59.896 50.000 5.11 0.00 0.00 1.98
201 202 1.134098 CCGTTTGGCCAGGTATGATCT 60.134 52.381 5.11 0.00 0.00 2.75
202 203 1.308998 CCGTTTGGCCAGGTATGATC 58.691 55.000 5.11 0.00 0.00 2.92
203 204 0.106719 CCCGTTTGGCCAGGTATGAT 60.107 55.000 5.11 0.00 0.00 2.45
204 205 1.301623 CCCGTTTGGCCAGGTATGA 59.698 57.895 5.11 0.00 0.00 2.15
205 206 3.918544 CCCGTTTGGCCAGGTATG 58.081 61.111 5.11 0.95 0.00 2.39
243 244 2.023414 TAGTAATCGTGCCCTGGCGG 62.023 60.000 3.32 0.00 45.51 6.13
244 245 0.033504 ATAGTAATCGTGCCCTGGCG 59.966 55.000 3.32 0.00 45.51 5.69
245 246 3.262420 CATATAGTAATCGTGCCCTGGC 58.738 50.000 0.00 0.00 42.35 4.85
246 247 3.369471 CCCATATAGTAATCGTGCCCTGG 60.369 52.174 0.00 0.00 0.00 4.45
247 248 3.260884 ACCCATATAGTAATCGTGCCCTG 59.739 47.826 0.00 0.00 0.00 4.45
248 249 3.514309 GACCCATATAGTAATCGTGCCCT 59.486 47.826 0.00 0.00 0.00 5.19
249 250 3.675228 CGACCCATATAGTAATCGTGCCC 60.675 52.174 0.00 0.00 0.00 5.36
250 251 3.057033 ACGACCCATATAGTAATCGTGCC 60.057 47.826 0.00 0.00 40.95 5.01
251 252 4.170292 ACGACCCATATAGTAATCGTGC 57.830 45.455 0.00 0.00 40.95 5.34
253 254 3.057033 GGCACGACCCATATAGTAATCGT 60.057 47.826 0.00 0.00 43.08 3.73
254 255 3.508762 GGCACGACCCATATAGTAATCG 58.491 50.000 0.00 0.00 35.74 3.34
309 310 1.202098 CGTTTACTAATTGGGCCGTGC 60.202 52.381 0.00 0.00 0.00 5.34
310 311 1.399089 CCGTTTACTAATTGGGCCGTG 59.601 52.381 0.00 0.00 0.00 4.94
311 312 1.679640 CCCGTTTACTAATTGGGCCGT 60.680 52.381 0.00 0.00 32.09 5.68
312 313 1.018910 CCCGTTTACTAATTGGGCCG 58.981 55.000 0.00 0.00 32.09 6.13
315 316 1.018910 CGGCCCGTTTACTAATTGGG 58.981 55.000 0.00 0.00 43.02 4.12
316 317 1.018910 CCGGCCCGTTTACTAATTGG 58.981 55.000 0.85 0.00 0.00 3.16
317 318 0.379316 GCCGGCCCGTTTACTAATTG 59.621 55.000 18.11 0.00 0.00 2.32
318 319 0.035247 TGCCGGCCCGTTTACTAATT 60.035 50.000 26.77 0.00 0.00 1.40
319 320 0.745486 GTGCCGGCCCGTTTACTAAT 60.745 55.000 26.77 0.00 0.00 1.73
320 321 1.375780 GTGCCGGCCCGTTTACTAA 60.376 57.895 26.77 0.00 0.00 2.24
321 322 2.265424 GTGCCGGCCCGTTTACTA 59.735 61.111 26.77 0.00 0.00 1.82
324 325 4.622650 AACGTGCCGGCCCGTTTA 62.623 61.111 38.23 11.19 44.16 2.01
338 339 1.136565 CATGCTAAACGGGCCAACG 59.863 57.895 4.39 1.48 40.31 4.10
339 340 1.248101 ACCATGCTAAACGGGCCAAC 61.248 55.000 4.39 0.00 0.00 3.77
340 341 1.075836 ACCATGCTAAACGGGCCAA 59.924 52.632 4.39 0.00 0.00 4.52
341 342 1.677300 CACCATGCTAAACGGGCCA 60.677 57.895 4.39 0.00 0.00 5.36
342 343 2.414785 CCACCATGCTAAACGGGCC 61.415 63.158 0.00 0.00 0.00 5.80
343 344 2.414785 CCCACCATGCTAAACGGGC 61.415 63.158 0.00 0.00 0.00 6.13
344 345 2.414785 GCCCACCATGCTAAACGGG 61.415 63.158 0.00 0.00 36.71 5.28
345 346 2.414785 GGCCCACCATGCTAAACGG 61.415 63.158 0.00 0.00 35.26 4.44
346 347 2.760159 CGGCCCACCATGCTAAACG 61.760 63.158 0.00 0.00 34.57 3.60
347 348 3.063743 GCGGCCCACCATGCTAAAC 62.064 63.158 0.00 0.00 34.57 2.01
348 349 2.753849 GCGGCCCACCATGCTAAA 60.754 61.111 0.00 0.00 34.57 1.85
349 350 1.988982 TATGCGGCCCACCATGCTAA 61.989 55.000 0.00 0.00 34.57 3.09
350 351 1.778017 ATATGCGGCCCACCATGCTA 61.778 55.000 0.00 0.00 34.57 3.49
351 352 2.645394 AATATGCGGCCCACCATGCT 62.645 55.000 0.00 0.00 34.57 3.79
352 353 1.747325 AAATATGCGGCCCACCATGC 61.747 55.000 0.00 0.00 34.57 4.06
353 354 0.752054 AAAATATGCGGCCCACCATG 59.248 50.000 0.00 0.00 34.57 3.66
354 355 1.039856 GAAAATATGCGGCCCACCAT 58.960 50.000 0.00 0.00 34.57 3.55
355 356 0.323816 TGAAAATATGCGGCCCACCA 60.324 50.000 0.00 0.00 34.57 4.17
356 357 0.385390 CTGAAAATATGCGGCCCACC 59.615 55.000 0.00 0.00 0.00 4.61
357 358 1.065551 GACTGAAAATATGCGGCCCAC 59.934 52.381 0.00 0.00 0.00 4.61
358 359 1.064758 AGACTGAAAATATGCGGCCCA 60.065 47.619 0.00 0.00 0.00 5.36
359 360 1.680338 AGACTGAAAATATGCGGCCC 58.320 50.000 0.00 0.00 0.00 5.80
360 361 6.743575 ATAATAGACTGAAAATATGCGGCC 57.256 37.500 0.00 0.00 0.00 6.13
361 362 8.289618 TCAAATAATAGACTGAAAATATGCGGC 58.710 33.333 0.00 0.00 0.00 6.53
362 363 9.599322 GTCAAATAATAGACTGAAAATATGCGG 57.401 33.333 0.00 0.00 0.00 5.69
363 364 9.306280 CGTCAAATAATAGACTGAAAATATGCG 57.694 33.333 0.00 0.00 32.68 4.73
364 365 9.107367 GCGTCAAATAATAGACTGAAAATATGC 57.893 33.333 0.00 0.00 32.68 3.14
367 368 9.378551 AGTGCGTCAAATAATAGACTGAAAATA 57.621 29.630 0.00 0.00 32.68 1.40
368 369 8.177663 CAGTGCGTCAAATAATAGACTGAAAAT 58.822 33.333 0.00 0.00 32.98 1.82
369 370 7.386573 TCAGTGCGTCAAATAATAGACTGAAAA 59.613 33.333 0.00 0.00 36.53 2.29
370 371 6.871492 TCAGTGCGTCAAATAATAGACTGAAA 59.129 34.615 0.00 0.00 36.53 2.69
371 372 6.394809 TCAGTGCGTCAAATAATAGACTGAA 58.605 36.000 0.00 0.00 36.53 3.02
372 373 5.961272 TCAGTGCGTCAAATAATAGACTGA 58.039 37.500 0.00 0.00 36.98 3.41
373 374 5.276584 GCTCAGTGCGTCAAATAATAGACTG 60.277 44.000 0.00 0.00 32.68 3.51
374 375 4.806247 GCTCAGTGCGTCAAATAATAGACT 59.194 41.667 0.00 0.00 32.68 3.24
375 376 5.071955 GCTCAGTGCGTCAAATAATAGAC 57.928 43.478 0.00 0.00 0.00 2.59
449 450 9.581099 CACGGCCTGATTAAGTTTTATTTTTAT 57.419 29.630 0.00 0.00 0.00 1.40
450 451 8.578151 ACACGGCCTGATTAAGTTTTATTTTTA 58.422 29.630 0.00 0.00 0.00 1.52
451 452 7.438564 ACACGGCCTGATTAAGTTTTATTTTT 58.561 30.769 0.00 0.00 0.00 1.94
452 453 6.988522 ACACGGCCTGATTAAGTTTTATTTT 58.011 32.000 0.00 0.00 0.00 1.82
453 454 6.584185 ACACGGCCTGATTAAGTTTTATTT 57.416 33.333 0.00 0.00 0.00 1.40
454 455 5.163794 CGACACGGCCTGATTAAGTTTTATT 60.164 40.000 0.00 0.00 0.00 1.40
455 456 4.331717 CGACACGGCCTGATTAAGTTTTAT 59.668 41.667 0.00 0.00 0.00 1.40
456 457 3.680937 CGACACGGCCTGATTAAGTTTTA 59.319 43.478 0.00 0.00 0.00 1.52
457 458 2.482721 CGACACGGCCTGATTAAGTTTT 59.517 45.455 0.00 0.00 0.00 2.43
458 459 2.073816 CGACACGGCCTGATTAAGTTT 58.926 47.619 0.00 0.00 0.00 2.66
459 460 1.001633 ACGACACGGCCTGATTAAGTT 59.998 47.619 0.00 0.00 0.00 2.66
460 461 0.606604 ACGACACGGCCTGATTAAGT 59.393 50.000 0.00 0.00 0.00 2.24
461 462 0.999406 CACGACACGGCCTGATTAAG 59.001 55.000 0.00 0.00 0.00 1.85
462 463 1.017177 GCACGACACGGCCTGATTAA 61.017 55.000 0.00 0.00 0.00 1.40
463 464 1.447140 GCACGACACGGCCTGATTA 60.447 57.895 0.00 0.00 0.00 1.75
464 465 2.742372 GCACGACACGGCCTGATT 60.742 61.111 0.00 0.00 0.00 2.57
465 466 4.760047 GGCACGACACGGCCTGAT 62.760 66.667 0.00 0.00 46.74 2.90
541 542 4.404098 ACGGGCTAAACGGGCTGG 62.404 66.667 0.00 0.00 41.63 4.85
542 543 3.124921 CACGGGCTAAACGGGCTG 61.125 66.667 0.00 0.00 42.78 4.85
620 621 2.107204 AGAGTATAGCTGGCCAAATGGG 59.893 50.000 7.01 0.00 40.85 4.00
621 622 3.498774 AGAGTATAGCTGGCCAAATGG 57.501 47.619 7.01 0.00 38.53 3.16
622 623 5.474578 TCTAGAGTATAGCTGGCCAAATG 57.525 43.478 7.01 0.00 0.00 2.32
623 624 5.545723 ACATCTAGAGTATAGCTGGCCAAAT 59.454 40.000 7.01 3.30 0.00 2.32
624 625 4.901849 ACATCTAGAGTATAGCTGGCCAAA 59.098 41.667 7.01 0.00 0.00 3.28
625 626 4.483950 ACATCTAGAGTATAGCTGGCCAA 58.516 43.478 7.01 0.00 0.00 4.52
626 627 4.119556 ACATCTAGAGTATAGCTGGCCA 57.880 45.455 4.71 4.71 0.00 5.36
627 628 4.097286 GCTACATCTAGAGTATAGCTGGCC 59.903 50.000 18.66 0.00 36.23 5.36
628 629 4.097286 GGCTACATCTAGAGTATAGCTGGC 59.903 50.000 22.35 12.59 38.63 4.85
629 630 5.124776 GTGGCTACATCTAGAGTATAGCTGG 59.875 48.000 22.35 6.32 38.63 4.85
630 631 5.707764 TGTGGCTACATCTAGAGTATAGCTG 59.292 44.000 22.35 8.56 38.63 4.24
631 632 5.708230 GTGTGGCTACATCTAGAGTATAGCT 59.292 44.000 22.35 0.00 39.39 3.32
632 633 5.106078 GGTGTGGCTACATCTAGAGTATAGC 60.106 48.000 18.09 18.09 39.39 2.97
633 634 5.416326 GGGTGTGGCTACATCTAGAGTATAG 59.584 48.000 13.62 1.25 38.04 1.31
634 635 5.074652 AGGGTGTGGCTACATCTAGAGTATA 59.925 44.000 13.62 0.00 38.04 1.47
635 636 4.140900 AGGGTGTGGCTACATCTAGAGTAT 60.141 45.833 13.62 0.00 38.04 2.12
636 637 3.204606 AGGGTGTGGCTACATCTAGAGTA 59.795 47.826 13.62 0.65 38.04 2.59
637 638 2.023888 AGGGTGTGGCTACATCTAGAGT 60.024 50.000 13.62 0.00 38.04 3.24
638 639 2.672098 AGGGTGTGGCTACATCTAGAG 58.328 52.381 13.62 0.00 38.04 2.43
639 640 2.766263 CAAGGGTGTGGCTACATCTAGA 59.234 50.000 13.62 0.00 38.04 2.43
745 750 0.033991 GCTTCCCTTCCCTTCCCTTC 60.034 60.000 0.00 0.00 0.00 3.46
905 926 3.003763 GTGAGCGAGGGAAGGGGT 61.004 66.667 0.00 0.00 0.00 4.95
910 931 2.119611 TGGGAGTGAGCGAGGGAA 59.880 61.111 0.00 0.00 0.00 3.97
911 932 2.680352 GTGGGAGTGAGCGAGGGA 60.680 66.667 0.00 0.00 0.00 4.20
1085 1397 0.389757 GCGGAGGCTAGGGTTTAGAG 59.610 60.000 0.00 0.00 35.83 2.43
1454 1779 1.220236 CTCCTCTTCCTCCTCCTCCAT 59.780 57.143 0.00 0.00 0.00 3.41
1468 1793 0.256464 AGGATTCGTCGTCCTCCTCT 59.744 55.000 0.00 0.00 42.38 3.69
1469 1794 2.796500 AGGATTCGTCGTCCTCCTC 58.204 57.895 0.00 0.00 42.38 3.71
1474 1799 1.063811 GTCGGAGGATTCGTCGTCC 59.936 63.158 7.01 7.01 39.02 4.79
1857 2191 0.673437 CGGGCACAAAGTGGAAATGT 59.327 50.000 0.00 0.00 33.64 2.71
1858 2192 0.038343 CCGGGCACAAAGTGGAAATG 60.038 55.000 0.00 0.00 33.64 2.32
1859 2193 0.469144 ACCGGGCACAAAGTGGAAAT 60.469 50.000 6.32 0.00 33.64 2.17
1887 2225 1.544724 AATGACCCCCACATTGAACG 58.455 50.000 0.00 0.00 36.74 3.95
1893 2231 0.255890 CGGAGAAATGACCCCCACAT 59.744 55.000 0.00 0.00 0.00 3.21
1916 2254 4.084013 CCACCTCGAATTAGAACAACACAC 60.084 45.833 0.00 0.00 0.00 3.82
1917 2255 4.062293 CCACCTCGAATTAGAACAACACA 58.938 43.478 0.00 0.00 0.00 3.72
1950 2288 2.047465 CTGCTGCTGCCTCGTCTT 60.047 61.111 13.47 0.00 38.71 3.01
1955 2293 3.360340 AAACGCTGCTGCTGCCTC 61.360 61.111 23.04 3.76 38.71 4.70
1956 2294 3.667282 CAAACGCTGCTGCTGCCT 61.667 61.111 23.04 11.04 38.71 4.75
1957 2295 3.886329 GACAAACGCTGCTGCTGCC 62.886 63.158 23.04 6.68 38.71 4.85
2001 2339 1.450669 GACCAACACCACACCACGT 60.451 57.895 0.00 0.00 0.00 4.49
2098 2442 1.627297 ATCCTCCTGGCGGAAGGAAC 61.627 60.000 5.02 0.00 45.81 3.62
2107 2451 1.742768 CTCGTGGTATCCTCCTGGC 59.257 63.158 0.00 0.00 0.00 4.85
2206 2552 4.324099 CCATGGGAGATTGAAGTCAGAAGT 60.324 45.833 2.85 0.00 0.00 3.01
2210 2556 3.641434 ACCATGGGAGATTGAAGTCAG 57.359 47.619 18.09 0.00 0.00 3.51
2218 2564 3.169512 ACCGAAAAACCATGGGAGATT 57.830 42.857 18.09 5.35 0.00 2.40
2241 2587 2.669924 CAGTGTTCACATCACAGATCGG 59.330 50.000 5.74 0.00 38.16 4.18
2385 2741 4.988598 AACACCACAGCGGAGGCG 62.989 66.667 0.00 0.00 46.35 5.52
2409 2765 2.630317 CAGCATCTCATTCGCGGC 59.370 61.111 6.13 0.00 0.00 6.53
2468 2824 1.905843 CTGATCGCCTCTCCGGGAT 60.906 63.158 0.00 0.00 0.00 3.85
2485 2860 3.121030 GGCGTCGCAACAGCATCT 61.121 61.111 20.50 0.00 0.00 2.90
2502 2889 3.367607 GAGTATGACTGCTGCTACTTCG 58.632 50.000 0.00 0.00 0.00 3.79
2509 2896 2.035632 ACCTAGGAGTATGACTGCTGC 58.964 52.381 17.98 0.00 46.65 5.25
2510 2897 3.449018 ACAACCTAGGAGTATGACTGCTG 59.551 47.826 17.98 0.00 46.65 4.41
2513 2900 5.407407 ACAACAACCTAGGAGTATGACTG 57.593 43.478 17.98 10.37 0.00 3.51
2514 2901 6.952358 TCTTACAACAACCTAGGAGTATGACT 59.048 38.462 17.98 0.00 0.00 3.41
2516 2903 7.786046 TTCTTACAACAACCTAGGAGTATGA 57.214 36.000 17.98 13.15 0.00 2.15
2517 2904 8.041323 ACATTCTTACAACAACCTAGGAGTATG 58.959 37.037 17.98 11.20 0.00 2.39
2518 2905 8.147244 ACATTCTTACAACAACCTAGGAGTAT 57.853 34.615 17.98 8.17 0.00 2.12
2519 2906 7.549147 ACATTCTTACAACAACCTAGGAGTA 57.451 36.000 17.98 7.18 0.00 2.59
2520 2907 6.435292 ACATTCTTACAACAACCTAGGAGT 57.565 37.500 17.98 10.89 0.00 3.85
2522 2909 6.833041 TGAACATTCTTACAACAACCTAGGA 58.167 36.000 17.98 0.00 0.00 2.94
2523 2910 7.362056 CCATGAACATTCTTACAACAACCTAGG 60.362 40.741 7.41 7.41 0.00 3.02
2524 2911 7.530010 CCATGAACATTCTTACAACAACCTAG 58.470 38.462 0.00 0.00 0.00 3.02
2525 2912 6.072175 GCCATGAACATTCTTACAACAACCTA 60.072 38.462 0.00 0.00 0.00 3.08
2526 2913 5.278957 GCCATGAACATTCTTACAACAACCT 60.279 40.000 0.00 0.00 0.00 3.50
2527 2914 4.923281 GCCATGAACATTCTTACAACAACC 59.077 41.667 0.00 0.00 0.00 3.77
2528 2915 5.630680 CAGCCATGAACATTCTTACAACAAC 59.369 40.000 0.00 0.00 0.00 3.32
2529 2916 5.278907 CCAGCCATGAACATTCTTACAACAA 60.279 40.000 0.00 0.00 0.00 2.83
2530 2917 4.218200 CCAGCCATGAACATTCTTACAACA 59.782 41.667 0.00 0.00 0.00 3.33
2531 2918 4.737054 CCAGCCATGAACATTCTTACAAC 58.263 43.478 0.00 0.00 0.00 3.32
2532 2919 3.193267 GCCAGCCATGAACATTCTTACAA 59.807 43.478 0.00 0.00 0.00 2.41
2533 2920 2.754552 GCCAGCCATGAACATTCTTACA 59.245 45.455 0.00 0.00 0.00 2.41
2567 2956 1.331214 CTCCTCAGCCATCTCTCTCC 58.669 60.000 0.00 0.00 0.00 3.71
2581 2977 2.126424 GACCACGTCGTGCTCCTC 60.126 66.667 20.01 7.25 31.34 3.71
2582 2978 2.597805 AGACCACGTCGTGCTCCT 60.598 61.111 20.01 12.29 37.67 3.69
2583 2979 2.430921 CAGACCACGTCGTGCTCC 60.431 66.667 20.01 10.29 37.67 4.70
2593 2989 4.394712 CACCGGAGCCCAGACCAC 62.395 72.222 9.46 0.00 0.00 4.16
2617 3013 1.780309 TGAACCACCCTTTGACCAGAT 59.220 47.619 0.00 0.00 0.00 2.90
2629 3030 4.158579 GGAATTGAAGAGGATTGAACCACC 59.841 45.833 0.00 0.00 0.00 4.61
2642 3043 4.891168 CACATGGGATGATGGAATTGAAGA 59.109 41.667 0.00 0.00 0.00 2.87
2643 3044 4.038763 CCACATGGGATGATGGAATTGAAG 59.961 45.833 0.00 0.00 40.01 3.02
2647 3048 3.302161 CACCACATGGGATGATGGAATT 58.698 45.455 0.00 0.00 41.15 2.17
2685 3092 3.747976 GTTGCCATCACCACCGCC 61.748 66.667 0.00 0.00 0.00 6.13
2696 3103 1.380246 GATGGAGCCATGGTTGCCA 60.380 57.895 17.32 18.79 36.70 4.92
2701 3108 2.692368 ACCGGATGGAGCCATGGT 60.692 61.111 14.67 6.23 39.21 3.55
2714 3121 2.125912 CCTCGAACTCAGCACCGG 60.126 66.667 0.00 0.00 0.00 5.28
2737 3144 2.489617 GAAGAAGACGACGCGAGCG 61.490 63.158 15.93 18.95 46.03 5.03
2761 3168 1.078001 AGGACCGCCGGTTAAATGG 60.078 57.895 11.54 0.00 35.25 3.16
2763 3170 0.392060 GACAGGACCGCCGGTTAAAT 60.392 55.000 11.54 0.00 42.94 1.40
2775 3182 1.216710 CTCTCAAGCCGGACAGGAC 59.783 63.158 5.05 0.00 45.00 3.85
2784 3191 1.066908 CGATCTCTCCACTCTCAAGCC 59.933 57.143 0.00 0.00 0.00 4.35
2795 3206 2.733945 GAGGCCAGCGATCTCTCC 59.266 66.667 5.01 0.00 0.00 3.71
2796 3207 2.128853 CTCGAGGCCAGCGATCTCTC 62.129 65.000 19.08 0.00 37.13 3.20
2797 3208 2.124109 TCGAGGCCAGCGATCTCT 60.124 61.111 15.60 0.00 32.09 3.10
2798 3209 1.523154 ATCTCGAGGCCAGCGATCTC 61.523 60.000 19.08 0.00 37.13 2.75
2799 3210 0.250945 TATCTCGAGGCCAGCGATCT 60.251 55.000 19.08 12.50 37.13 2.75
2800 3211 0.170116 CTATCTCGAGGCCAGCGATC 59.830 60.000 19.08 0.00 37.13 3.69
2801 3212 1.872197 GCTATCTCGAGGCCAGCGAT 61.872 60.000 19.08 13.53 37.13 4.58
2802 3213 2.556459 GCTATCTCGAGGCCAGCGA 61.556 63.158 17.99 17.99 36.23 4.93
2803 3214 2.049618 GCTATCTCGAGGCCAGCG 60.050 66.667 13.56 8.88 0.00 5.18
2804 3215 0.319469 GAAGCTATCTCGAGGCCAGC 60.319 60.000 19.69 19.69 0.00 4.85
2805 3216 0.039617 CGAAGCTATCTCGAGGCCAG 60.040 60.000 13.56 8.41 0.00 4.85
2806 3217 1.456196 CCGAAGCTATCTCGAGGCCA 61.456 60.000 13.56 0.00 0.00 5.36
2807 3218 1.287503 CCGAAGCTATCTCGAGGCC 59.712 63.158 13.56 0.00 0.00 5.19
2808 3219 4.955089 CCGAAGCTATCTCGAGGC 57.045 61.111 13.56 8.39 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.