Multiple sequence alignment - TraesCS4A01G267900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G267900 chr4A 100.000 3134 0 0 1 3134 580305107 580301974 0.000000e+00 5788.0
1 TraesCS4A01G267900 chr4D 90.540 1649 109 13 965 2578 21152291 21150655 0.000000e+00 2137.0
2 TraesCS4A01G267900 chr4D 94.714 227 7 2 2908 3134 21150187 21149966 6.430000e-92 348.0
3 TraesCS4A01G267900 chr4D 93.714 175 10 1 459 632 21152794 21152620 8.620000e-66 261.0
4 TraesCS4A01G267900 chr4D 86.082 194 8 6 721 913 21152473 21152298 1.150000e-44 191.0
5 TraesCS4A01G267900 chr4D 93.750 96 4 1 2689 2782 21150415 21150320 3.260000e-30 143.0
6 TraesCS4A01G267900 chr4D 89.412 85 5 4 382 466 21165664 21165584 1.540000e-18 104.0
7 TraesCS4A01G267900 chr5B 93.260 638 33 5 1615 2246 86129649 86130282 0.000000e+00 931.0
8 TraesCS4A01G267900 chr4B 92.368 642 35 6 1619 2246 299459040 299459681 0.000000e+00 902.0
9 TraesCS4A01G267900 chr4B 88.700 646 48 5 1855 2484 33623048 33623684 0.000000e+00 765.0
10 TraesCS4A01G267900 chr4B 86.192 717 53 17 1169 1856 33622235 33622934 0.000000e+00 734.0
11 TraesCS4A01G267900 chr4B 95.017 301 11 2 2835 3134 33624121 33624418 1.320000e-128 470.0
12 TraesCS4A01G267900 chr4B 91.039 279 18 4 357 632 33621538 33621812 1.370000e-98 370.0
13 TraesCS4A01G267900 chr4B 95.376 173 5 2 956 1125 33622058 33622230 3.980000e-69 272.0
14 TraesCS4A01G267900 chr4B 90.541 148 10 1 792 939 33621929 33622072 3.190000e-45 193.0
15 TraesCS4A01G267900 chr4B 80.000 245 32 10 2437 2676 33623692 33623924 6.950000e-37 165.0
16 TraesCS4A01G267900 chr4B 94.253 87 2 1 401 487 33621336 33621419 2.540000e-26 130.0
17 TraesCS4A01G267900 chr4B 93.617 47 3 0 725 771 33621885 33621931 1.560000e-08 71.3
18 TraesCS4A01G267900 chr3B 82.700 237 29 11 399 632 114881368 114881141 1.910000e-47 200.0
19 TraesCS4A01G267900 chr3B 87.324 71 2 5 380 448 114881445 114881380 1.210000e-09 75.0
20 TraesCS4A01G267900 chr3D 81.557 244 35 9 393 632 67540996 67541233 3.190000e-45 193.0
21 TraesCS4A01G267900 chr3A 92.857 126 8 1 947 1071 555428674 555428549 6.900000e-42 182.0
22 TraesCS4A01G267900 chr3A 80.081 246 34 10 395 632 78899264 78899502 5.380000e-38 169.0
23 TraesCS4A01G267900 chr7A 91.339 127 9 2 945 1071 643761353 643761477 4.160000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G267900 chr4A 580301974 580305107 3133 True 5788.000000 5788 100.000000 1 3134 1 chr4A.!!$R1 3133
1 TraesCS4A01G267900 chr4D 21149966 21152794 2828 True 616.000000 2137 91.760000 459 3134 5 chr4D.!!$R2 2675
2 TraesCS4A01G267900 chr5B 86129649 86130282 633 False 931.000000 931 93.260000 1615 2246 1 chr5B.!!$F1 631
3 TraesCS4A01G267900 chr4B 299459040 299459681 641 False 902.000000 902 92.368000 1619 2246 1 chr4B.!!$F1 627
4 TraesCS4A01G267900 chr4B 33621336 33624418 3082 False 352.255556 765 90.526111 357 3134 9 chr4B.!!$F2 2777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 875 0.036952 ACACACTTCTCCGCCTGATG 60.037 55.0 0.00 0.0 0.00 3.07 F
1241 1332 0.664761 CAATCCCGTGGCTAATGCAG 59.335 55.0 0.00 0.0 41.91 4.41 F
2103 2350 0.609957 TCTTCTACGAGTGCCCGGAA 60.610 55.0 0.73 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 2350 0.173935 CATTGAATGCGTGGCCACAT 59.826 50.000 34.16 19.27 0.00 3.21 R
2106 2353 0.322366 TCTCATTGAATGCGTGGCCA 60.322 50.000 0.00 0.00 0.00 5.36 R
3053 3562 4.104102 TCAGAATACAACCCCTGAAAGTGT 59.896 41.667 0.00 0.00 33.26 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.910267 GGGGGAAATAAAGTACTTAGAAATGTA 57.090 33.333 8.92 0.00 0.00 2.29
48 49 9.283768 AGAAATGTAATGAAAAACCAAATTCCC 57.716 29.630 0.00 0.00 0.00 3.97
49 50 8.986929 AAATGTAATGAAAAACCAAATTCCCA 57.013 26.923 0.00 0.00 0.00 4.37
50 51 9.585369 AAATGTAATGAAAAACCAAATTCCCAT 57.415 25.926 0.00 0.00 0.00 4.00
97 98 4.473477 AGAAAGTATTAGACAAGCCGCT 57.527 40.909 0.00 0.00 0.00 5.52
98 99 4.434520 AGAAAGTATTAGACAAGCCGCTC 58.565 43.478 0.00 0.00 0.00 5.03
100 101 3.444703 AGTATTAGACAAGCCGCTCAG 57.555 47.619 0.00 0.00 0.00 3.35
101 102 3.024547 AGTATTAGACAAGCCGCTCAGA 58.975 45.455 0.00 0.00 0.00 3.27
106 107 3.104843 AGACAAGCCGCTCAGAATATC 57.895 47.619 0.00 0.00 0.00 1.63
109 110 3.609853 ACAAGCCGCTCAGAATATCAAA 58.390 40.909 0.00 0.00 0.00 2.69
110 111 3.624861 ACAAGCCGCTCAGAATATCAAAG 59.375 43.478 0.00 0.00 0.00 2.77
112 113 4.348863 AGCCGCTCAGAATATCAAAGAT 57.651 40.909 0.00 0.00 0.00 2.40
114 115 4.514441 AGCCGCTCAGAATATCAAAGATTG 59.486 41.667 0.00 0.00 0.00 2.67
116 117 5.333952 GCCGCTCAGAATATCAAAGATTGAG 60.334 44.000 0.00 0.00 43.98 3.02
123 124 9.617523 TCAGAATATCAAAGATTGAGCAATACA 57.382 29.630 0.00 0.00 43.98 2.29
138 139 8.888332 TGAGCAATACATATTAAACAACAACG 57.112 30.769 0.00 0.00 0.00 4.10
139 140 7.483375 TGAGCAATACATATTAAACAACAACGC 59.517 33.333 0.00 0.00 0.00 4.84
141 142 8.670135 AGCAATACATATTAAACAACAACGCTA 58.330 29.630 0.00 0.00 0.00 4.26
180 181 6.399639 AAACATACTACAACCCTTGGTTTG 57.600 37.500 0.00 0.00 44.33 2.93
181 182 5.313280 ACATACTACAACCCTTGGTTTGA 57.687 39.130 3.96 0.00 44.33 2.69
183 184 5.944007 ACATACTACAACCCTTGGTTTGATC 59.056 40.000 3.96 0.00 44.33 2.92
185 186 1.616159 ACAACCCTTGGTTTGATCCG 58.384 50.000 3.96 0.00 44.33 4.18
186 187 0.243636 CAACCCTTGGTTTGATCCGC 59.756 55.000 0.00 0.00 44.33 5.54
187 188 0.112412 AACCCTTGGTTTGATCCGCT 59.888 50.000 0.00 0.00 44.33 5.52
188 189 0.609131 ACCCTTGGTTTGATCCGCTG 60.609 55.000 0.00 0.00 27.29 5.18
191 192 0.109597 CTTGGTTTGATCCGCTGTGC 60.110 55.000 0.00 0.00 0.00 4.57
192 193 0.821301 TTGGTTTGATCCGCTGTGCA 60.821 50.000 0.00 0.00 0.00 4.57
193 194 0.821301 TGGTTTGATCCGCTGTGCAA 60.821 50.000 0.00 0.00 0.00 4.08
195 196 1.408422 GTTTGATCCGCTGTGCAAAC 58.592 50.000 0.00 0.00 0.00 2.93
196 197 0.313672 TTTGATCCGCTGTGCAAACC 59.686 50.000 0.00 0.00 0.00 3.27
197 198 1.523154 TTGATCCGCTGTGCAAACCC 61.523 55.000 0.00 0.00 0.00 4.11
198 199 2.676471 ATCCGCTGTGCAAACCCC 60.676 61.111 0.00 0.00 0.00 4.95
199 200 3.210012 ATCCGCTGTGCAAACCCCT 62.210 57.895 0.00 0.00 0.00 4.79
200 201 1.847798 ATCCGCTGTGCAAACCCCTA 61.848 55.000 0.00 0.00 0.00 3.53
201 202 2.040544 CCGCTGTGCAAACCCCTAG 61.041 63.158 0.00 0.00 0.00 3.02
202 203 2.040544 CGCTGTGCAAACCCCTAGG 61.041 63.158 0.06 0.06 40.04 3.02
217 218 3.225940 CCCTAGGGATGCCAAAGATTTC 58.774 50.000 24.99 0.00 37.50 2.17
218 219 3.373001 CCCTAGGGATGCCAAAGATTTCA 60.373 47.826 24.99 0.00 37.50 2.69
219 220 4.280819 CCTAGGGATGCCAAAGATTTCAA 58.719 43.478 5.86 0.00 0.00 2.69
220 221 4.711355 CCTAGGGATGCCAAAGATTTCAAA 59.289 41.667 5.86 0.00 0.00 2.69
221 222 4.813750 AGGGATGCCAAAGATTTCAAAG 57.186 40.909 5.86 0.00 0.00 2.77
222 223 4.419282 AGGGATGCCAAAGATTTCAAAGA 58.581 39.130 5.86 0.00 0.00 2.52
223 224 5.028131 AGGGATGCCAAAGATTTCAAAGAT 58.972 37.500 5.86 0.00 0.00 2.40
224 225 5.486419 AGGGATGCCAAAGATTTCAAAGATT 59.514 36.000 5.86 0.00 0.00 2.40
225 226 5.583457 GGGATGCCAAAGATTTCAAAGATTG 59.417 40.000 0.00 0.00 0.00 2.67
226 227 6.168389 GGATGCCAAAGATTTCAAAGATTGT 58.832 36.000 0.00 0.00 0.00 2.71
227 228 6.091713 GGATGCCAAAGATTTCAAAGATTGTG 59.908 38.462 0.00 0.00 0.00 3.33
228 229 4.751098 TGCCAAAGATTTCAAAGATTGTGC 59.249 37.500 0.00 0.00 0.00 4.57
229 230 4.751098 GCCAAAGATTTCAAAGATTGTGCA 59.249 37.500 0.00 0.00 0.00 4.57
230 231 5.236911 GCCAAAGATTTCAAAGATTGTGCAA 59.763 36.000 0.00 0.00 0.00 4.08
231 232 6.238429 GCCAAAGATTTCAAAGATTGTGCAAA 60.238 34.615 0.00 0.00 0.00 3.68
232 233 7.520937 GCCAAAGATTTCAAAGATTGTGCAAAT 60.521 33.333 0.00 0.00 0.00 2.32
233 234 8.991026 CCAAAGATTTCAAAGATTGTGCAAATA 58.009 29.630 0.00 0.00 0.00 1.40
242 243 9.656040 TCAAAGATTGTGCAAATAAATAATGCT 57.344 25.926 0.00 0.00 40.66 3.79
249 250 8.909708 TGTGCAAATAAATAATGCTAAGACAC 57.090 30.769 0.00 0.00 40.66 3.67
250 251 8.518702 TGTGCAAATAAATAATGCTAAGACACA 58.481 29.630 0.00 0.00 40.66 3.72
251 252 9.352784 GTGCAAATAAATAATGCTAAGACACAA 57.647 29.630 0.00 0.00 40.66 3.33
261 262 6.903883 ATGCTAAGACACAATAAAGGTACG 57.096 37.500 0.00 0.00 0.00 3.67
262 263 5.786311 TGCTAAGACACAATAAAGGTACGT 58.214 37.500 0.00 0.00 0.00 3.57
263 264 5.865552 TGCTAAGACACAATAAAGGTACGTC 59.134 40.000 0.00 0.00 0.00 4.34
264 265 5.865552 GCTAAGACACAATAAAGGTACGTCA 59.134 40.000 0.00 0.00 0.00 4.35
265 266 6.034683 GCTAAGACACAATAAAGGTACGTCAG 59.965 42.308 0.00 0.00 0.00 3.51
266 267 5.717078 AGACACAATAAAGGTACGTCAGA 57.283 39.130 0.00 0.00 0.00 3.27
267 268 5.467705 AGACACAATAAAGGTACGTCAGAC 58.532 41.667 0.00 0.00 0.00 3.51
268 269 5.010314 AGACACAATAAAGGTACGTCAGACA 59.990 40.000 0.41 0.00 0.00 3.41
269 270 5.603596 ACACAATAAAGGTACGTCAGACAA 58.396 37.500 0.41 0.00 0.00 3.18
270 271 5.694910 ACACAATAAAGGTACGTCAGACAAG 59.305 40.000 0.41 0.00 0.00 3.16
271 272 5.120208 CACAATAAAGGTACGTCAGACAAGG 59.880 44.000 0.41 0.00 0.00 3.61
272 273 5.011329 ACAATAAAGGTACGTCAGACAAGGA 59.989 40.000 0.41 0.00 0.00 3.36
273 274 5.934402 ATAAAGGTACGTCAGACAAGGAT 57.066 39.130 0.41 0.00 0.00 3.24
274 275 4.618920 AAAGGTACGTCAGACAAGGATT 57.381 40.909 0.41 0.00 0.00 3.01
275 276 4.618920 AAGGTACGTCAGACAAGGATTT 57.381 40.909 0.41 0.00 0.00 2.17
276 277 4.618920 AGGTACGTCAGACAAGGATTTT 57.381 40.909 0.41 0.00 0.00 1.82
277 278 4.566987 AGGTACGTCAGACAAGGATTTTC 58.433 43.478 0.41 0.00 0.00 2.29
278 279 4.039973 AGGTACGTCAGACAAGGATTTTCA 59.960 41.667 0.41 0.00 0.00 2.69
279 280 4.753107 GGTACGTCAGACAAGGATTTTCAA 59.247 41.667 0.41 0.00 0.00 2.69
280 281 5.237779 GGTACGTCAGACAAGGATTTTCAAA 59.762 40.000 0.41 0.00 0.00 2.69
281 282 5.828299 ACGTCAGACAAGGATTTTCAAAA 57.172 34.783 0.41 0.00 0.00 2.44
282 283 5.578776 ACGTCAGACAAGGATTTTCAAAAC 58.421 37.500 0.41 0.00 0.00 2.43
283 284 5.357032 ACGTCAGACAAGGATTTTCAAAACT 59.643 36.000 0.41 0.00 0.00 2.66
284 285 6.127730 ACGTCAGACAAGGATTTTCAAAACTT 60.128 34.615 0.41 0.00 0.00 2.66
285 286 6.197096 CGTCAGACAAGGATTTTCAAAACTTG 59.803 38.462 10.31 10.31 40.12 3.16
286 287 6.476706 GTCAGACAAGGATTTTCAAAACTTGG 59.523 38.462 14.51 1.94 39.34 3.61
287 288 5.234972 CAGACAAGGATTTTCAAAACTTGGC 59.765 40.000 14.51 12.38 41.44 4.52
288 289 4.119136 ACAAGGATTTTCAAAACTTGGCG 58.881 39.130 14.51 0.00 39.34 5.69
289 290 2.754472 AGGATTTTCAAAACTTGGCGC 58.246 42.857 0.00 0.00 0.00 6.53
290 291 1.798223 GGATTTTCAAAACTTGGCGCC 59.202 47.619 22.73 22.73 0.00 6.53
291 292 2.478831 GATTTTCAAAACTTGGCGCCA 58.521 42.857 29.03 29.03 0.00 5.69
292 293 2.611225 TTTTCAAAACTTGGCGCCAT 57.389 40.000 33.25 14.69 0.00 4.40
293 294 2.147436 TTTCAAAACTTGGCGCCATC 57.853 45.000 33.25 1.54 0.00 3.51
294 295 0.316841 TTCAAAACTTGGCGCCATCC 59.683 50.000 33.25 1.08 0.00 3.51
295 296 1.444212 CAAAACTTGGCGCCATCCG 60.444 57.895 33.25 23.27 40.75 4.18
296 297 1.901464 AAAACTTGGCGCCATCCGT 60.901 52.632 33.25 23.96 39.71 4.69
297 298 2.141122 AAAACTTGGCGCCATCCGTG 62.141 55.000 33.25 19.49 39.71 4.94
298 299 3.545124 AACTTGGCGCCATCCGTGA 62.545 57.895 33.25 13.76 39.71 4.35
299 300 2.514592 CTTGGCGCCATCCGTGAT 60.515 61.111 33.25 0.00 39.71 3.06
300 301 1.227527 CTTGGCGCCATCCGTGATA 60.228 57.895 33.25 12.02 39.71 2.15
301 302 0.603707 CTTGGCGCCATCCGTGATAT 60.604 55.000 33.25 0.00 39.71 1.63
302 303 0.179032 TTGGCGCCATCCGTGATATT 60.179 50.000 33.25 0.00 39.71 1.28
303 304 0.682292 TGGCGCCATCCGTGATATTA 59.318 50.000 29.03 0.00 39.71 0.98
304 305 1.070914 TGGCGCCATCCGTGATATTAA 59.929 47.619 29.03 0.00 39.71 1.40
305 306 1.463444 GGCGCCATCCGTGATATTAAC 59.537 52.381 24.80 0.00 39.71 2.01
306 307 2.413837 GCGCCATCCGTGATATTAACT 58.586 47.619 0.00 0.00 39.71 2.24
307 308 2.157668 GCGCCATCCGTGATATTAACTG 59.842 50.000 0.00 0.00 39.71 3.16
308 309 3.390135 CGCCATCCGTGATATTAACTGT 58.610 45.455 0.00 0.00 0.00 3.55
309 310 3.184379 CGCCATCCGTGATATTAACTGTG 59.816 47.826 0.00 0.00 0.00 3.66
310 311 3.058914 GCCATCCGTGATATTAACTGTGC 60.059 47.826 0.00 0.00 0.00 4.57
311 312 4.126437 CCATCCGTGATATTAACTGTGCA 58.874 43.478 0.00 0.00 0.00 4.57
312 313 4.756642 CCATCCGTGATATTAACTGTGCAT 59.243 41.667 0.00 0.00 0.00 3.96
313 314 5.931724 CCATCCGTGATATTAACTGTGCATA 59.068 40.000 0.00 0.00 0.00 3.14
314 315 6.426633 CCATCCGTGATATTAACTGTGCATAA 59.573 38.462 0.00 0.00 0.00 1.90
315 316 7.119699 CCATCCGTGATATTAACTGTGCATAAT 59.880 37.037 0.00 0.00 0.00 1.28
316 317 7.420184 TCCGTGATATTAACTGTGCATAATG 57.580 36.000 0.00 0.00 0.00 1.90
317 318 6.073276 TCCGTGATATTAACTGTGCATAATGC 60.073 38.462 0.00 0.00 45.29 3.56
318 319 6.073058 CCGTGATATTAACTGTGCATAATGCT 60.073 38.462 0.00 0.00 45.31 3.79
319 320 6.793680 CGTGATATTAACTGTGCATAATGCTG 59.206 38.462 0.00 0.00 45.31 4.41
320 321 7.307337 CGTGATATTAACTGTGCATAATGCTGA 60.307 37.037 0.00 0.00 45.31 4.26
321 322 8.509690 GTGATATTAACTGTGCATAATGCTGAT 58.490 33.333 0.00 0.00 45.31 2.90
322 323 8.508875 TGATATTAACTGTGCATAATGCTGATG 58.491 33.333 0.00 0.00 45.31 3.07
323 324 6.947644 ATTAACTGTGCATAATGCTGATGA 57.052 33.333 0.00 0.00 45.31 2.92
324 325 6.947644 TTAACTGTGCATAATGCTGATGAT 57.052 33.333 0.00 0.00 45.31 2.45
325 326 5.847111 AACTGTGCATAATGCTGATGATT 57.153 34.783 0.00 0.00 45.31 2.57
326 327 5.847111 ACTGTGCATAATGCTGATGATTT 57.153 34.783 0.00 0.00 45.31 2.17
327 328 6.216801 ACTGTGCATAATGCTGATGATTTT 57.783 33.333 0.00 0.00 45.31 1.82
328 329 6.270815 ACTGTGCATAATGCTGATGATTTTC 58.729 36.000 0.00 0.00 45.31 2.29
329 330 6.127563 ACTGTGCATAATGCTGATGATTTTCA 60.128 34.615 0.00 0.00 45.31 2.69
330 331 6.631962 TGTGCATAATGCTGATGATTTTCAA 58.368 32.000 0.00 0.00 45.31 2.69
331 332 7.097834 TGTGCATAATGCTGATGATTTTCAAA 58.902 30.769 0.00 0.00 45.31 2.69
332 333 7.603024 TGTGCATAATGCTGATGATTTTCAAAA 59.397 29.630 0.00 0.00 45.31 2.44
333 334 8.609176 GTGCATAATGCTGATGATTTTCAAAAT 58.391 29.630 0.00 0.00 45.31 1.82
334 335 9.819267 TGCATAATGCTGATGATTTTCAAAATA 57.181 25.926 0.00 0.00 45.31 1.40
451 452 3.687698 TCCGCTTGCTTAAATCCAGTTAC 59.312 43.478 0.00 0.00 0.00 2.50
452 453 3.689649 CCGCTTGCTTAAATCCAGTTACT 59.310 43.478 0.00 0.00 0.00 2.24
453 454 4.201822 CCGCTTGCTTAAATCCAGTTACTC 60.202 45.833 0.00 0.00 0.00 2.59
504 505 3.770933 ACCATGTGAGGCTTGCATAATTT 59.229 39.130 4.77 0.00 0.00 1.82
575 576 2.667969 CGATGAGCAACGATTGAAGTGA 59.332 45.455 0.00 0.00 0.00 3.41
594 595 6.300354 AGTGATGTTTTAAAGTGGTCGAAG 57.700 37.500 0.00 0.00 0.00 3.79
623 624 3.630769 TCGTATAGCTGTGTGGGACTAAG 59.369 47.826 0.00 0.00 0.00 2.18
624 625 3.243434 CGTATAGCTGTGTGGGACTAAGG 60.243 52.174 0.00 0.00 0.00 2.69
626 627 1.958288 AGCTGTGTGGGACTAAGGAT 58.042 50.000 0.00 0.00 0.00 3.24
628 629 2.766828 AGCTGTGTGGGACTAAGGATAC 59.233 50.000 0.00 0.00 0.00 2.24
637 724 6.911993 TGGGACTAAGGATACCCATTTAAA 57.088 37.500 0.00 0.00 46.04 1.52
681 768 3.767673 TGAGTGCCGACTAAAAGATACCT 59.232 43.478 0.00 0.00 30.16 3.08
686 773 3.554544 GCCGACTAAAAGATACCTAGCCC 60.555 52.174 0.00 0.00 0.00 5.19
711 798 4.307908 GTGCACGCGGTGACCAAC 62.308 66.667 12.47 0.00 35.23 3.77
712 799 4.840005 TGCACGCGGTGACCAACA 62.840 61.111 12.47 0.00 35.23 3.33
771 858 2.759973 CTAGGGCCCGCAGAGACA 60.760 66.667 18.44 0.00 0.00 3.41
775 862 4.008933 GGCCCGCAGAGACACACT 62.009 66.667 0.00 0.00 0.00 3.55
776 863 2.031163 GCCCGCAGAGACACACTT 59.969 61.111 0.00 0.00 0.00 3.16
777 864 2.029844 GCCCGCAGAGACACACTTC 61.030 63.158 0.00 0.00 0.00 3.01
778 865 1.668294 CCCGCAGAGACACACTTCT 59.332 57.895 0.00 0.00 0.00 2.85
779 866 0.389166 CCCGCAGAGACACACTTCTC 60.389 60.000 0.00 0.00 42.22 2.87
780 867 0.389166 CCGCAGAGACACACTTCTCC 60.389 60.000 0.00 0.00 42.81 3.71
781 868 0.730834 CGCAGAGACACACTTCTCCG 60.731 60.000 0.00 0.00 42.81 4.63
782 869 1.011451 GCAGAGACACACTTCTCCGC 61.011 60.000 0.00 0.00 42.81 5.54
783 870 0.389166 CAGAGACACACTTCTCCGCC 60.389 60.000 0.00 0.00 42.81 6.13
784 871 0.540830 AGAGACACACTTCTCCGCCT 60.541 55.000 0.00 0.00 42.81 5.52
785 872 0.389166 GAGACACACTTCTCCGCCTG 60.389 60.000 0.00 0.00 36.74 4.85
786 873 0.827925 AGACACACTTCTCCGCCTGA 60.828 55.000 0.00 0.00 0.00 3.86
787 874 0.247736 GACACACTTCTCCGCCTGAT 59.752 55.000 0.00 0.00 0.00 2.90
788 875 0.036952 ACACACTTCTCCGCCTGATG 60.037 55.000 0.00 0.00 0.00 3.07
789 876 0.742281 CACACTTCTCCGCCTGATGG 60.742 60.000 0.00 0.00 0.00 3.51
790 877 1.194781 ACACTTCTCCGCCTGATGGT 61.195 55.000 0.00 0.00 35.27 3.55
835 923 2.885644 CGGACTGCGAATCCACGG 60.886 66.667 0.00 0.00 35.83 4.94
909 997 2.172679 GAGGTCGGAAGAAGAGGAAGT 58.827 52.381 0.00 0.00 45.01 3.01
913 1001 4.021280 AGGTCGGAAGAAGAGGAAGTAAAC 60.021 45.833 0.00 0.00 45.01 2.01
915 1003 3.822735 TCGGAAGAAGAGGAAGTAAACGA 59.177 43.478 0.00 0.00 37.03 3.85
916 1004 4.279169 TCGGAAGAAGAGGAAGTAAACGAA 59.721 41.667 0.00 0.00 37.03 3.85
917 1005 4.986659 CGGAAGAAGAGGAAGTAAACGAAA 59.013 41.667 0.00 0.00 0.00 3.46
918 1006 5.118817 CGGAAGAAGAGGAAGTAAACGAAAG 59.881 44.000 0.00 0.00 0.00 2.62
919 1007 5.408909 GGAAGAAGAGGAAGTAAACGAAAGG 59.591 44.000 0.00 0.00 0.00 3.11
921 1009 3.055209 AGAGGAAGTAAACGAAAGGCC 57.945 47.619 0.00 0.00 0.00 5.19
923 1011 1.171308 GGAAGTAAACGAAAGGCCCC 58.829 55.000 0.00 0.00 0.00 5.80
924 1012 1.171308 GAAGTAAACGAAAGGCCCCC 58.829 55.000 0.00 0.00 0.00 5.40
941 1029 1.522900 CCCCCTCTCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
942 1030 1.421646 CCCCCTCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
943 1031 2.412591 CCCCTCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
944 1032 2.370189 CCCCTCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
945 1033 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
946 1034 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
947 1035 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
948 1036 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
949 1037 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
950 1038 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
951 1039 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
952 1040 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
953 1041 2.370189 CTCTCTCTCTCTCTCTCTCCCC 59.630 59.091 0.00 0.00 0.00 4.81
954 1042 1.421646 CTCTCTCTCTCTCTCTCCCCC 59.578 61.905 0.00 0.00 0.00 5.40
1146 1237 1.066071 CCTCCCTTCCTTCGTTCCTTC 60.066 57.143 0.00 0.00 0.00 3.46
1152 1243 1.267121 TCCTTCGTTCCTTCCTCCAG 58.733 55.000 0.00 0.00 0.00 3.86
1160 1251 2.044551 CTTCCTCCAGGCCCAAGC 60.045 66.667 0.00 0.00 38.76 4.01
1199 1290 2.028112 TCCCGAATCACAGAACTCTTGG 60.028 50.000 0.00 0.00 0.00 3.61
1241 1332 0.664761 CAATCCCGTGGCTAATGCAG 59.335 55.000 0.00 0.00 41.91 4.41
1249 1340 0.680921 TGGCTAATGCAGAACTGGCC 60.681 55.000 0.00 0.00 41.91 5.36
1254 1345 0.704076 AATGCAGAACTGGCCCCTTA 59.296 50.000 0.00 0.00 0.00 2.69
1336 1433 5.353678 CCATCTCTCTCTGTCAAAATCAACC 59.646 44.000 0.00 0.00 0.00 3.77
1348 1445 4.898265 TCAAAATCAACCAATGGTTCCAGA 59.102 37.500 15.79 10.34 43.05 3.86
1383 1481 4.444720 GTGTGCAGAACGGCTTATATACTC 59.555 45.833 0.00 0.00 34.04 2.59
1467 1581 5.218139 GCTGGACTTGAGAAAATTGTTCAG 58.782 41.667 0.00 0.00 37.33 3.02
1483 1600 4.873817 TGTTCAGTCTTTTGGAATGCATG 58.126 39.130 0.00 0.00 39.56 4.06
1493 1610 7.975616 GTCTTTTGGAATGCATGAATTAGCTTA 59.024 33.333 0.00 0.00 0.00 3.09
1496 1613 9.669887 TTTTGGAATGCATGAATTAGCTTAATT 57.330 25.926 0.00 0.00 40.84 1.40
1549 1666 5.762218 AGAATTGATGATTTTCTAGCTCGGG 59.238 40.000 0.00 0.00 0.00 5.14
1608 1726 7.920151 TGACAATTTTGATTTTGTGGTCTAGTG 59.080 33.333 0.00 0.00 36.25 2.74
1689 1809 1.750778 ACCAGGCAACACAAGTTTCTG 59.249 47.619 0.00 0.00 35.28 3.02
1698 1818 2.943033 ACACAAGTTTCTGTTTCCGGAG 59.057 45.455 3.34 0.00 0.00 4.63
1724 1844 7.461416 GCACGTGCTTGATTTTGAATTACATAC 60.461 37.037 32.55 0.00 38.21 2.39
1759 1881 9.859427 CAGGATATTAGAAGAGAGCTAAAGATG 57.141 37.037 0.00 0.00 32.16 2.90
1856 1979 3.096092 TGCTTTTGCCCCTGGTTATTAG 58.904 45.455 0.00 0.00 46.87 1.73
1904 2147 4.546570 TGAGCGTTTCACATATATCCTCG 58.453 43.478 0.00 0.00 0.00 4.63
2103 2350 0.609957 TCTTCTACGAGTGCCCGGAA 60.610 55.000 0.73 0.00 0.00 4.30
2106 2353 0.968901 TCTACGAGTGCCCGGAATGT 60.969 55.000 0.73 0.00 0.00 2.71
2179 2426 5.316987 GGTATGGATATGGGTGGAAGAAAG 58.683 45.833 0.00 0.00 0.00 2.62
2211 2458 3.804518 TTGGTTGACAATCGATGTTCG 57.195 42.857 0.00 0.00 44.12 3.95
2271 2518 3.669557 GCATCGTTTTGGCGTGTATTCTT 60.670 43.478 0.00 0.00 0.00 2.52
2279 2526 6.662414 TTTGGCGTGTATTCTTATCTTGAG 57.338 37.500 0.00 0.00 0.00 3.02
2306 2553 3.391296 ACCTGGGATATGTTAATGCTCGT 59.609 43.478 0.00 0.00 0.00 4.18
2307 2554 4.141482 ACCTGGGATATGTTAATGCTCGTT 60.141 41.667 0.00 0.00 0.00 3.85
2308 2555 4.821805 CCTGGGATATGTTAATGCTCGTTT 59.178 41.667 0.00 0.00 0.00 3.60
2355 2612 6.612306 GGAACCTTGTATTTGACTGAATGTC 58.388 40.000 0.00 0.00 45.54 3.06
2372 2629 1.824852 TGTCGCCATAGAAAGAGCAGA 59.175 47.619 0.00 0.00 0.00 4.26
2374 2631 2.605366 GTCGCCATAGAAAGAGCAGAAC 59.395 50.000 0.00 0.00 0.00 3.01
2398 2655 5.334879 CGTCTTGTTTCTAAAGGTGATTGGG 60.335 44.000 0.00 0.00 0.00 4.12
2426 2683 2.866198 CTGCATTTTTGTAGCGCATCA 58.134 42.857 11.47 5.12 31.10 3.07
2492 2796 5.712217 TTGTGATAGTTAATACAGTGCGC 57.288 39.130 0.00 0.00 0.00 6.09
2502 2807 4.775058 AATACAGTGCGCATTGGTTTTA 57.225 36.364 32.39 18.24 0.00 1.52
2513 2818 5.460646 CGCATTGGTTTTATCTCAAGTTGT 58.539 37.500 2.11 0.00 0.00 3.32
2520 2825 8.918202 TGGTTTTATCTCAAGTTGTACTTCAT 57.082 30.769 2.11 0.00 36.03 2.57
2521 2826 8.783093 TGGTTTTATCTCAAGTTGTACTTCATG 58.217 33.333 2.11 0.00 36.03 3.07
2527 2832 6.223852 TCTCAAGTTGTACTTCATGGACTTC 58.776 40.000 2.11 0.00 36.03 3.01
2529 2834 3.926616 AGTTGTACTTCATGGACTTCGG 58.073 45.455 0.00 0.00 0.00 4.30
2664 3079 3.926058 TTAGGAATCTTAGGTGGTGCC 57.074 47.619 0.00 0.00 37.58 5.01
2682 3123 1.705337 CCTTGGGCATCTTGTACGCG 61.705 60.000 3.53 3.53 0.00 6.01
2716 3159 2.111384 GGCAGAGTGAGTAGATTCCCA 58.889 52.381 0.00 0.00 0.00 4.37
2731 3174 2.198827 TCCCAAGGCACATGTACTTG 57.801 50.000 24.77 24.77 40.85 3.16
2746 3189 7.703621 CACATGTACTTGGATCCAATCATTTTC 59.296 37.037 27.20 13.39 35.20 2.29
2784 3227 4.497966 GCACGGTTCTGTTACAAAAACTTC 59.502 41.667 9.22 0.00 0.00 3.01
2785 3228 5.632959 CACGGTTCTGTTACAAAAACTTCA 58.367 37.500 9.22 0.00 0.00 3.02
2789 3232 6.250527 CGGTTCTGTTACAAAAACTTCAACTG 59.749 38.462 9.22 0.00 0.00 3.16
2797 3240 9.233232 GTTACAAAAACTTCAACTGTTCTATGG 57.767 33.333 0.00 0.00 0.00 2.74
2810 3253 5.178096 TGTTCTATGGAATCAAGCCAGAA 57.822 39.130 0.00 0.00 39.11 3.02
2822 3301 4.765273 TCAAGCCAGAATTATGCTTCGTA 58.235 39.130 6.74 0.00 43.10 3.43
2823 3302 5.182487 TCAAGCCAGAATTATGCTTCGTAA 58.818 37.500 6.74 0.00 43.10 3.18
2826 3305 7.661437 TCAAGCCAGAATTATGCTTCGTAATAT 59.339 33.333 6.74 0.00 43.10 1.28
2827 3306 7.986085 AGCCAGAATTATGCTTCGTAATATT 57.014 32.000 0.00 0.00 29.17 1.28
2828 3307 8.396272 AGCCAGAATTATGCTTCGTAATATTT 57.604 30.769 0.00 0.00 29.17 1.40
2829 3308 8.292448 AGCCAGAATTATGCTTCGTAATATTTG 58.708 33.333 0.00 0.00 29.17 2.32
2830 3309 7.061094 GCCAGAATTATGCTTCGTAATATTTGC 59.939 37.037 0.00 0.00 0.00 3.68
2832 3311 9.110617 CAGAATTATGCTTCGTAATATTTGCTG 57.889 33.333 0.00 0.00 0.00 4.41
2833 3312 8.292448 AGAATTATGCTTCGTAATATTTGCTGG 58.708 33.333 0.00 0.00 0.00 4.85
2847 3352 4.935352 TTTGCTGGCATTTAAGTCAACT 57.065 36.364 0.00 0.00 0.00 3.16
2867 3372 6.975197 TCAACTGATCTCGAGCTAATTAGTTG 59.025 38.462 27.21 27.21 43.17 3.16
2895 3403 9.765795 GTAAAAATATACTCTAGATGCACCAGT 57.234 33.333 0.00 0.00 0.00 4.00
2900 3408 4.399004 ACTCTAGATGCACCAGTCAATC 57.601 45.455 0.00 0.00 0.00 2.67
2901 3409 3.771479 ACTCTAGATGCACCAGTCAATCA 59.229 43.478 0.00 0.00 0.00 2.57
2903 3411 4.763073 TCTAGATGCACCAGTCAATCAAG 58.237 43.478 0.00 0.00 0.00 3.02
2917 3426 6.875726 CAGTCAATCAAGGAAACTGATACTGA 59.124 38.462 8.89 0.00 42.68 3.41
2939 3448 4.964593 ACAGCAAGAAATTTGGAGCATTT 58.035 34.783 0.00 0.00 0.00 2.32
2952 3461 2.429610 GGAGCATTTGCATTGACCAGAT 59.570 45.455 5.20 0.00 45.16 2.90
2953 3462 3.118884 GGAGCATTTGCATTGACCAGATT 60.119 43.478 5.20 0.00 45.16 2.40
2954 3463 4.501071 GAGCATTTGCATTGACCAGATTT 58.499 39.130 5.20 0.00 45.16 2.17
3028 3537 2.556840 ATCCCCAATGACCTGCCACG 62.557 60.000 0.00 0.00 0.00 4.94
3053 3562 6.769134 TTACGACAATTCTGAGACCATCTA 57.231 37.500 0.00 0.00 0.00 1.98
3098 3607 7.942341 TCTGAATACAGTAAACCTTGACCAATT 59.058 33.333 0.00 0.00 43.81 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.283768 GGGAATTTGGTTTTTCATTACATTTCT 57.716 29.630 0.00 0.00 0.00 2.52
23 24 9.061435 TGGGAATTTGGTTTTTCATTACATTTC 57.939 29.630 0.00 0.00 0.00 2.17
69 70 8.932791 CGGCTTGTCTAATACTTTCTTCTTTTA 58.067 33.333 0.00 0.00 0.00 1.52
71 72 6.128254 GCGGCTTGTCTAATACTTTCTTCTTT 60.128 38.462 0.00 0.00 0.00 2.52
73 74 4.870991 GCGGCTTGTCTAATACTTTCTTCT 59.129 41.667 0.00 0.00 0.00 2.85
75 76 4.833390 AGCGGCTTGTCTAATACTTTCTT 58.167 39.130 0.00 0.00 0.00 2.52
76 77 4.081642 TGAGCGGCTTGTCTAATACTTTCT 60.082 41.667 2.97 0.00 0.00 2.52
78 79 4.081642 TCTGAGCGGCTTGTCTAATACTTT 60.082 41.667 2.97 0.00 0.00 2.66
80 81 3.024547 TCTGAGCGGCTTGTCTAATACT 58.975 45.455 2.97 0.00 0.00 2.12
81 82 3.438297 TCTGAGCGGCTTGTCTAATAC 57.562 47.619 2.97 0.00 0.00 1.89
82 83 4.672587 ATTCTGAGCGGCTTGTCTAATA 57.327 40.909 2.97 0.00 0.00 0.98
83 84 3.550437 ATTCTGAGCGGCTTGTCTAAT 57.450 42.857 2.97 0.00 0.00 1.73
84 85 4.099419 TGATATTCTGAGCGGCTTGTCTAA 59.901 41.667 2.97 0.00 0.00 2.10
86 87 2.432146 TGATATTCTGAGCGGCTTGTCT 59.568 45.455 2.97 0.00 0.00 3.41
87 88 2.826428 TGATATTCTGAGCGGCTTGTC 58.174 47.619 2.97 0.00 0.00 3.18
88 89 2.988010 TGATATTCTGAGCGGCTTGT 57.012 45.000 2.97 0.00 0.00 3.16
89 90 3.873361 TCTTTGATATTCTGAGCGGCTTG 59.127 43.478 2.97 0.32 0.00 4.01
93 94 5.333952 GCTCAATCTTTGATATTCTGAGCGG 60.334 44.000 12.93 0.00 39.30 5.52
94 95 5.235831 TGCTCAATCTTTGATATTCTGAGCG 59.764 40.000 18.71 0.00 46.23 5.03
97 98 9.617523 TGTATTGCTCAATCTTTGATATTCTGA 57.382 29.630 0.00 0.00 39.30 3.27
112 113 9.335891 CGTTGTTGTTTAATATGTATTGCTCAA 57.664 29.630 0.00 0.00 0.00 3.02
114 115 7.696453 AGCGTTGTTGTTTAATATGTATTGCTC 59.304 33.333 0.00 0.00 0.00 4.26
116 117 7.734538 AGCGTTGTTGTTTAATATGTATTGC 57.265 32.000 0.00 0.00 0.00 3.56
155 156 7.124448 TCAAACCAAGGGTTGTAGTATGTTTTT 59.876 33.333 15.96 0.00 46.20 1.94
156 157 6.608002 TCAAACCAAGGGTTGTAGTATGTTTT 59.392 34.615 15.96 0.00 46.20 2.43
157 158 6.130569 TCAAACCAAGGGTTGTAGTATGTTT 58.869 36.000 15.96 0.00 46.20 2.83
158 159 5.697067 TCAAACCAAGGGTTGTAGTATGTT 58.303 37.500 15.96 0.00 46.20 2.71
159 160 5.313280 TCAAACCAAGGGTTGTAGTATGT 57.687 39.130 15.96 0.00 46.20 2.29
160 161 5.357032 GGATCAAACCAAGGGTTGTAGTATG 59.643 44.000 15.96 2.25 46.20 2.39
161 162 5.506708 GGATCAAACCAAGGGTTGTAGTAT 58.493 41.667 15.96 2.90 46.20 2.12
162 163 4.563993 CGGATCAAACCAAGGGTTGTAGTA 60.564 45.833 15.96 0.00 46.20 1.82
163 164 3.763057 GGATCAAACCAAGGGTTGTAGT 58.237 45.455 15.96 4.63 46.20 2.73
165 166 2.785562 CGGATCAAACCAAGGGTTGTA 58.214 47.619 15.96 4.43 46.20 2.41
166 167 1.616159 CGGATCAAACCAAGGGTTGT 58.384 50.000 15.96 4.47 46.20 3.32
169 170 0.609131 CAGCGGATCAAACCAAGGGT 60.609 55.000 0.00 0.00 37.65 4.34
171 172 0.523072 CACAGCGGATCAAACCAAGG 59.477 55.000 0.00 0.00 0.00 3.61
172 173 0.109597 GCACAGCGGATCAAACCAAG 60.110 55.000 0.00 0.00 0.00 3.61
174 175 0.821301 TTGCACAGCGGATCAAACCA 60.821 50.000 0.00 0.00 0.00 3.67
175 176 0.313672 TTTGCACAGCGGATCAAACC 59.686 50.000 0.00 0.00 0.00 3.27
176 177 1.408422 GTTTGCACAGCGGATCAAAC 58.592 50.000 16.76 16.76 40.64 2.93
177 178 0.313672 GGTTTGCACAGCGGATCAAA 59.686 50.000 0.00 0.00 0.00 2.69
178 179 1.523154 GGGTTTGCACAGCGGATCAA 61.523 55.000 0.00 0.00 0.00 2.57
180 181 2.700773 GGGGTTTGCACAGCGGATC 61.701 63.158 0.00 0.00 0.00 3.36
181 182 1.847798 TAGGGGTTTGCACAGCGGAT 61.848 55.000 0.00 0.00 0.00 4.18
183 184 2.033448 TAGGGGTTTGCACAGCGG 59.967 61.111 0.00 0.00 0.00 5.52
185 186 1.678970 CCCTAGGGGTTTGCACAGC 60.679 63.158 21.44 0.00 38.25 4.40
186 187 0.625849 ATCCCTAGGGGTTTGCACAG 59.374 55.000 28.19 0.00 44.74 3.66
187 188 0.331278 CATCCCTAGGGGTTTGCACA 59.669 55.000 28.19 5.95 44.74 4.57
188 189 1.037579 GCATCCCTAGGGGTTTGCAC 61.038 60.000 30.56 13.44 45.35 4.57
191 192 0.334676 TTGGCATCCCTAGGGGTTTG 59.665 55.000 28.19 21.78 44.74 2.93
192 193 1.007118 CTTTGGCATCCCTAGGGGTTT 59.993 52.381 28.19 10.41 44.74 3.27
193 194 0.631212 CTTTGGCATCCCTAGGGGTT 59.369 55.000 28.19 13.08 44.74 4.11
195 196 1.152649 ATCTTTGGCATCCCTAGGGG 58.847 55.000 28.19 13.85 46.11 4.79
196 197 3.225940 GAAATCTTTGGCATCCCTAGGG 58.774 50.000 23.22 23.22 0.00 3.53
197 198 3.902218 TGAAATCTTTGGCATCCCTAGG 58.098 45.455 0.06 0.06 0.00 3.02
198 199 5.653769 TCTTTGAAATCTTTGGCATCCCTAG 59.346 40.000 0.00 0.00 0.00 3.02
199 200 5.579047 TCTTTGAAATCTTTGGCATCCCTA 58.421 37.500 0.00 0.00 0.00 3.53
200 201 4.419282 TCTTTGAAATCTTTGGCATCCCT 58.581 39.130 0.00 0.00 0.00 4.20
201 202 4.806640 TCTTTGAAATCTTTGGCATCCC 57.193 40.909 0.00 0.00 0.00 3.85
202 203 6.091713 CACAATCTTTGAAATCTTTGGCATCC 59.908 38.462 0.00 0.00 0.00 3.51
203 204 6.401796 GCACAATCTTTGAAATCTTTGGCATC 60.402 38.462 0.00 0.00 0.00 3.91
205 206 4.751098 GCACAATCTTTGAAATCTTTGGCA 59.249 37.500 0.00 0.00 0.00 4.92
206 207 4.751098 TGCACAATCTTTGAAATCTTTGGC 59.249 37.500 0.00 0.00 0.00 4.52
207 208 6.847956 TTGCACAATCTTTGAAATCTTTGG 57.152 33.333 0.00 0.00 0.00 3.28
223 224 9.352784 GTGTCTTAGCATTATTTATTTGCACAA 57.647 29.630 0.00 0.00 38.84 3.33
224 225 8.518702 TGTGTCTTAGCATTATTTATTTGCACA 58.481 29.630 0.00 0.00 38.84 4.57
225 226 8.909708 TGTGTCTTAGCATTATTTATTTGCAC 57.090 30.769 0.00 0.00 38.84 4.57
235 236 9.042008 CGTACCTTTATTGTGTCTTAGCATTAT 57.958 33.333 0.00 0.00 0.00 1.28
236 237 8.036575 ACGTACCTTTATTGTGTCTTAGCATTA 58.963 33.333 0.00 0.00 0.00 1.90
237 238 6.877322 ACGTACCTTTATTGTGTCTTAGCATT 59.123 34.615 0.00 0.00 0.00 3.56
238 239 6.403878 ACGTACCTTTATTGTGTCTTAGCAT 58.596 36.000 0.00 0.00 0.00 3.79
239 240 5.786311 ACGTACCTTTATTGTGTCTTAGCA 58.214 37.500 0.00 0.00 0.00 3.49
240 241 5.865552 TGACGTACCTTTATTGTGTCTTAGC 59.134 40.000 0.00 0.00 0.00 3.09
241 242 7.272948 GTCTGACGTACCTTTATTGTGTCTTAG 59.727 40.741 0.00 0.00 0.00 2.18
242 243 7.086376 GTCTGACGTACCTTTATTGTGTCTTA 58.914 38.462 0.00 0.00 0.00 2.10
243 244 5.924825 GTCTGACGTACCTTTATTGTGTCTT 59.075 40.000 0.00 0.00 0.00 3.01
244 245 5.010314 TGTCTGACGTACCTTTATTGTGTCT 59.990 40.000 2.98 0.00 0.00 3.41
245 246 5.224888 TGTCTGACGTACCTTTATTGTGTC 58.775 41.667 2.98 0.00 0.00 3.67
246 247 5.204409 TGTCTGACGTACCTTTATTGTGT 57.796 39.130 2.98 0.00 0.00 3.72
247 248 5.120208 CCTTGTCTGACGTACCTTTATTGTG 59.880 44.000 2.98 0.00 0.00 3.33
248 249 5.011329 TCCTTGTCTGACGTACCTTTATTGT 59.989 40.000 2.98 0.00 0.00 2.71
249 250 5.475719 TCCTTGTCTGACGTACCTTTATTG 58.524 41.667 2.98 0.00 0.00 1.90
250 251 5.733620 TCCTTGTCTGACGTACCTTTATT 57.266 39.130 2.98 0.00 0.00 1.40
251 252 5.934402 ATCCTTGTCTGACGTACCTTTAT 57.066 39.130 2.98 0.00 0.00 1.40
252 253 5.733620 AATCCTTGTCTGACGTACCTTTA 57.266 39.130 2.98 0.00 0.00 1.85
253 254 4.618920 AATCCTTGTCTGACGTACCTTT 57.381 40.909 2.98 0.00 0.00 3.11
254 255 4.618920 AAATCCTTGTCTGACGTACCTT 57.381 40.909 2.98 0.00 0.00 3.50
255 256 4.039973 TGAAAATCCTTGTCTGACGTACCT 59.960 41.667 2.98 0.00 0.00 3.08
256 257 4.312443 TGAAAATCCTTGTCTGACGTACC 58.688 43.478 2.98 0.00 0.00 3.34
257 258 5.917541 TTGAAAATCCTTGTCTGACGTAC 57.082 39.130 2.98 0.00 0.00 3.67
258 259 6.540914 AGTTTTGAAAATCCTTGTCTGACGTA 59.459 34.615 2.98 0.00 0.00 3.57
259 260 5.357032 AGTTTTGAAAATCCTTGTCTGACGT 59.643 36.000 2.98 0.00 0.00 4.34
260 261 5.821204 AGTTTTGAAAATCCTTGTCTGACG 58.179 37.500 2.98 0.00 0.00 4.35
261 262 6.476706 CCAAGTTTTGAAAATCCTTGTCTGAC 59.523 38.462 15.42 0.00 0.00 3.51
262 263 6.572519 CCAAGTTTTGAAAATCCTTGTCTGA 58.427 36.000 15.42 0.00 0.00 3.27
263 264 5.234972 GCCAAGTTTTGAAAATCCTTGTCTG 59.765 40.000 15.42 6.10 0.00 3.51
264 265 5.359756 GCCAAGTTTTGAAAATCCTTGTCT 58.640 37.500 15.42 0.00 0.00 3.41
265 266 4.209080 CGCCAAGTTTTGAAAATCCTTGTC 59.791 41.667 15.42 6.26 0.00 3.18
266 267 4.119136 CGCCAAGTTTTGAAAATCCTTGT 58.881 39.130 15.42 0.00 0.00 3.16
267 268 3.059665 GCGCCAAGTTTTGAAAATCCTTG 60.060 43.478 11.77 11.77 0.00 3.61
268 269 3.130633 GCGCCAAGTTTTGAAAATCCTT 58.869 40.909 0.00 0.00 0.00 3.36
269 270 2.547855 GGCGCCAAGTTTTGAAAATCCT 60.548 45.455 24.80 0.00 0.00 3.24
270 271 1.798223 GGCGCCAAGTTTTGAAAATCC 59.202 47.619 24.80 0.00 0.00 3.01
271 272 2.478831 TGGCGCCAAGTTTTGAAAATC 58.521 42.857 30.74 0.00 0.00 2.17
272 273 2.611225 TGGCGCCAAGTTTTGAAAAT 57.389 40.000 30.74 0.00 0.00 1.82
273 274 2.478831 GATGGCGCCAAGTTTTGAAAA 58.521 42.857 36.33 4.88 0.00 2.29
274 275 1.270041 GGATGGCGCCAAGTTTTGAAA 60.270 47.619 36.33 5.54 0.00 2.69
275 276 0.316841 GGATGGCGCCAAGTTTTGAA 59.683 50.000 36.33 6.47 0.00 2.69
276 277 1.861542 CGGATGGCGCCAAGTTTTGA 61.862 55.000 36.33 7.40 0.00 2.69
277 278 1.444212 CGGATGGCGCCAAGTTTTG 60.444 57.895 36.33 16.25 0.00 2.44
278 279 1.901464 ACGGATGGCGCCAAGTTTT 60.901 52.632 36.33 17.84 0.00 2.43
279 280 2.282180 ACGGATGGCGCCAAGTTT 60.282 55.556 36.33 18.31 0.00 2.66
280 281 2.819984 ATCACGGATGGCGCCAAGTT 62.820 55.000 36.33 18.78 0.00 2.66
281 282 1.966901 TATCACGGATGGCGCCAAGT 61.967 55.000 36.33 28.92 0.00 3.16
282 283 0.603707 ATATCACGGATGGCGCCAAG 60.604 55.000 36.33 28.23 0.00 3.61
283 284 0.179032 AATATCACGGATGGCGCCAA 60.179 50.000 36.33 17.20 0.00 4.52
284 285 0.682292 TAATATCACGGATGGCGCCA 59.318 50.000 34.80 34.80 0.00 5.69
285 286 1.463444 GTTAATATCACGGATGGCGCC 59.537 52.381 22.73 22.73 0.00 6.53
286 287 2.157668 CAGTTAATATCACGGATGGCGC 59.842 50.000 0.00 0.00 0.00 6.53
287 288 3.184379 CACAGTTAATATCACGGATGGCG 59.816 47.826 0.00 0.00 0.00 5.69
288 289 3.058914 GCACAGTTAATATCACGGATGGC 60.059 47.826 0.00 0.00 0.00 4.40
289 290 4.126437 TGCACAGTTAATATCACGGATGG 58.874 43.478 0.00 0.00 0.00 3.51
290 291 5.929697 ATGCACAGTTAATATCACGGATG 57.070 39.130 0.00 0.00 0.00 3.51
291 292 7.361201 GCATTATGCACAGTTAATATCACGGAT 60.361 37.037 12.80 0.00 44.26 4.18
292 293 6.073276 GCATTATGCACAGTTAATATCACGGA 60.073 38.462 12.80 0.00 44.26 4.69
293 294 6.079763 GCATTATGCACAGTTAATATCACGG 58.920 40.000 12.80 0.00 44.26 4.94
393 394 2.579201 GCTCCCGCAGCTTGTCTA 59.421 61.111 0.00 0.00 45.83 2.59
451 452 2.941720 GAGTGCAGCATTTCCCTAAGAG 59.058 50.000 0.00 0.00 0.00 2.85
452 453 2.305635 TGAGTGCAGCATTTCCCTAAGA 59.694 45.455 0.00 0.00 0.00 2.10
453 454 2.421424 GTGAGTGCAGCATTTCCCTAAG 59.579 50.000 0.00 0.00 0.00 2.18
504 505 1.673009 GATGAACGGGGCAAACGGA 60.673 57.895 0.00 0.00 35.23 4.69
566 567 7.012894 TCGACCACTTTAAAACATCACTTCAAT 59.987 33.333 0.00 0.00 0.00 2.57
575 576 6.937436 AGAACTTCGACCACTTTAAAACAT 57.063 33.333 0.00 0.00 0.00 2.71
594 595 4.106197 CCACACAGCTATACGAGAAGAAC 58.894 47.826 0.00 0.00 0.00 3.01
657 744 4.933400 GGTATCTTTTAGTCGGCACTCAAA 59.067 41.667 0.00 0.00 33.62 2.69
658 745 4.222145 AGGTATCTTTTAGTCGGCACTCAA 59.778 41.667 0.00 0.00 33.62 3.02
659 746 3.767673 AGGTATCTTTTAGTCGGCACTCA 59.232 43.478 0.00 0.00 33.62 3.41
660 747 4.388378 AGGTATCTTTTAGTCGGCACTC 57.612 45.455 0.00 0.00 33.62 3.51
661 748 4.202131 GCTAGGTATCTTTTAGTCGGCACT 60.202 45.833 0.00 0.00 36.55 4.40
662 749 4.049869 GCTAGGTATCTTTTAGTCGGCAC 58.950 47.826 0.00 0.00 0.00 5.01
663 750 3.069158 GGCTAGGTATCTTTTAGTCGGCA 59.931 47.826 0.00 0.00 0.00 5.69
664 751 3.554544 GGGCTAGGTATCTTTTAGTCGGC 60.555 52.174 0.00 0.00 0.00 5.54
665 752 3.006644 GGGGCTAGGTATCTTTTAGTCGG 59.993 52.174 0.00 0.00 0.00 4.79
666 753 3.896272 AGGGGCTAGGTATCTTTTAGTCG 59.104 47.826 0.00 0.00 0.00 4.18
667 754 4.040584 CCAGGGGCTAGGTATCTTTTAGTC 59.959 50.000 0.00 0.00 0.00 2.59
668 755 3.974642 CCAGGGGCTAGGTATCTTTTAGT 59.025 47.826 0.00 0.00 0.00 2.24
669 756 3.244596 GCCAGGGGCTAGGTATCTTTTAG 60.245 52.174 0.00 0.00 46.69 1.85
696 783 4.307908 GTGTTGGTCACCGCGTGC 62.308 66.667 4.92 0.50 40.84 5.34
709 796 1.228337 GGCCCGGTAAAGGTGTGTT 60.228 57.895 0.00 0.00 0.00 3.32
710 797 2.120737 GAGGCCCGGTAAAGGTGTGT 62.121 60.000 0.00 0.00 0.00 3.72
711 798 1.376812 GAGGCCCGGTAAAGGTGTG 60.377 63.158 0.00 0.00 0.00 3.82
712 799 1.131928 AAGAGGCCCGGTAAAGGTGT 61.132 55.000 0.00 0.00 0.00 4.16
713 800 0.676782 CAAGAGGCCCGGTAAAGGTG 60.677 60.000 0.00 0.00 0.00 4.00
714 801 1.683441 CAAGAGGCCCGGTAAAGGT 59.317 57.895 0.00 0.00 0.00 3.50
715 802 1.077716 CCAAGAGGCCCGGTAAAGG 60.078 63.158 0.00 0.00 0.00 3.11
716 803 1.077716 CCCAAGAGGCCCGGTAAAG 60.078 63.158 0.00 0.00 0.00 1.85
717 804 3.083386 CCCAAGAGGCCCGGTAAA 58.917 61.111 0.00 0.00 0.00 2.01
737 824 2.500504 CCTAGGGAAAACTCTAACGCCT 59.499 50.000 0.00 0.00 0.00 5.52
771 858 1.194781 ACCATCAGGCGGAGAAGTGT 61.195 55.000 0.00 0.00 39.06 3.55
774 861 0.460987 GTCACCATCAGGCGGAGAAG 60.461 60.000 0.00 0.00 39.06 2.85
775 862 1.596934 GTCACCATCAGGCGGAGAA 59.403 57.895 0.00 0.00 39.06 2.87
776 863 2.359169 GGTCACCATCAGGCGGAGA 61.359 63.158 0.00 0.00 39.06 3.71
777 864 2.187946 GGTCACCATCAGGCGGAG 59.812 66.667 0.00 0.00 39.06 4.63
778 865 3.770040 CGGTCACCATCAGGCGGA 61.770 66.667 0.00 0.00 39.06 5.54
779 866 4.838152 CCGGTCACCATCAGGCGG 62.838 72.222 0.00 0.00 39.06 6.13
780 867 4.082523 ACCGGTCACCATCAGGCG 62.083 66.667 0.00 0.00 39.06 5.52
781 868 2.125106 GACCGGTCACCATCAGGC 60.125 66.667 29.75 0.00 39.06 4.85
782 869 2.290287 TGGACCGGTCACCATCAGG 61.290 63.158 34.40 0.00 42.21 3.86
783 870 1.079127 GTGGACCGGTCACCATCAG 60.079 63.158 34.40 0.00 38.48 2.90
784 871 1.198094 ATGTGGACCGGTCACCATCA 61.198 55.000 34.40 23.04 38.48 3.07
785 872 0.462047 GATGTGGACCGGTCACCATC 60.462 60.000 32.41 32.41 38.48 3.51
786 873 1.602237 GATGTGGACCGGTCACCAT 59.398 57.895 34.40 30.95 38.48 3.55
787 874 2.589157 GGATGTGGACCGGTCACCA 61.589 63.158 34.40 28.06 34.46 4.17
788 875 1.910580 ATGGATGTGGACCGGTCACC 61.911 60.000 34.40 25.61 34.46 4.02
789 876 0.462047 GATGGATGTGGACCGGTCAC 60.462 60.000 34.40 27.60 35.82 3.67
790 877 1.622607 GGATGGATGTGGACCGGTCA 61.623 60.000 34.40 16.97 0.00 4.02
821 909 0.250124 TTTCACCGTGGATTCGCAGT 60.250 50.000 0.00 0.00 0.00 4.40
835 923 0.517316 CTGCGCACTTAGGGTTTCAC 59.483 55.000 5.66 0.00 0.00 3.18
923 1011 2.370189 GAGAGAGAGAGAGAGAGAGGGG 59.630 59.091 0.00 0.00 0.00 4.79
924 1012 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
925 1013 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
926 1014 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
927 1015 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
928 1016 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
929 1017 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
930 1018 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
931 1019 3.309296 GGGAGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
932 1020 2.370189 GGGGAGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
933 1021 2.408565 GGGGAGAGAGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
934 1022 1.421646 GGGGGAGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
935 1023 1.518367 GGGGGAGAGAGAGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
951 1039 1.710816 GGAGATACAGAGACAGGGGG 58.289 60.000 0.00 0.00 0.00 5.40
952 1040 1.710816 GGGAGATACAGAGACAGGGG 58.289 60.000 0.00 0.00 0.00 4.79
953 1041 1.323412 CGGGAGATACAGAGACAGGG 58.677 60.000 0.00 0.00 0.00 4.45
954 1042 0.671251 GCGGGAGATACAGAGACAGG 59.329 60.000 0.00 0.00 0.00 4.00
955 1043 1.066303 GTGCGGGAGATACAGAGACAG 59.934 57.143 0.00 0.00 0.00 3.51
956 1044 1.103803 GTGCGGGAGATACAGAGACA 58.896 55.000 0.00 0.00 0.00 3.41
957 1045 0.029567 CGTGCGGGAGATACAGAGAC 59.970 60.000 0.00 0.00 0.00 3.36
1137 1228 2.291043 GGCCTGGAGGAAGGAACGA 61.291 63.158 0.00 0.00 40.02 3.85
1139 1230 1.789576 TTGGGCCTGGAGGAAGGAAC 61.790 60.000 4.53 0.00 40.02 3.62
1146 1237 1.077429 GTAAGCTTGGGCCTGGAGG 60.077 63.158 9.86 0.00 39.73 4.30
1152 1243 0.179234 GAGAGGAGTAAGCTTGGGCC 59.821 60.000 9.86 7.20 39.73 5.80
1160 1251 1.611491 GGATCCGCAGAGAGGAGTAAG 59.389 57.143 0.00 0.00 41.66 2.34
1199 1290 3.650647 TCACAAGGATGCTTGGGAC 57.349 52.632 26.17 0.00 41.30 4.46
1241 1332 2.166459 GCAGAAAATAAGGGGCCAGTTC 59.834 50.000 4.39 0.00 0.00 3.01
1249 1340 6.148480 CCTTCGATATCTGCAGAAAATAAGGG 59.852 42.308 22.50 14.25 0.00 3.95
1254 1345 5.296151 TCCCTTCGATATCTGCAGAAAAT 57.704 39.130 22.50 17.11 0.00 1.82
1313 1404 5.936372 TGGTTGATTTTGACAGAGAGAGATG 59.064 40.000 0.00 0.00 0.00 2.90
1314 1405 6.119240 TGGTTGATTTTGACAGAGAGAGAT 57.881 37.500 0.00 0.00 0.00 2.75
1336 1433 3.403038 AGTTCTTCGTCTGGAACCATTG 58.597 45.455 0.00 0.00 41.69 2.82
1348 1445 1.961394 TCTGCACACCTAGTTCTTCGT 59.039 47.619 0.00 0.00 0.00 3.85
1383 1481 3.060272 CGACACTGCAATCTAATTAGCCG 60.060 47.826 7.67 0.02 0.00 5.52
1467 1581 6.335777 AGCTAATTCATGCATTCCAAAAGAC 58.664 36.000 0.00 0.00 0.00 3.01
1549 1666 6.043411 CAGTTCTAGGGTAAGCTTACACATC 58.957 44.000 34.30 20.74 39.52 3.06
1595 1713 6.468333 TGTACAGTTACACTAGACCACAAA 57.532 37.500 0.00 0.00 32.98 2.83
1608 1726 7.891183 ATCAACAGATGTCTTGTACAGTTAC 57.109 36.000 0.00 0.00 42.70 2.50
1617 1735 8.396390 CAGGATCTAAAATCAACAGATGTCTTG 58.604 37.037 0.00 0.00 0.00 3.02
1624 1742 6.051717 GCTAGCAGGATCTAAAATCAACAGA 58.948 40.000 10.63 0.00 0.00 3.41
1665 1785 4.464597 AGAAACTTGTGTTGCCTGGTAAAA 59.535 37.500 0.00 0.00 36.39 1.52
1698 1818 4.679197 TGTAATTCAAAATCAAGCACGTGC 59.321 37.500 32.79 32.79 42.49 5.34
1724 1844 7.258441 TCTCTTCTAATATCCTGTCAACAACG 58.742 38.462 0.00 0.00 0.00 4.10
1802 1924 0.620556 ACCAGGGATCTTTGCACGAT 59.379 50.000 0.00 0.00 0.00 3.73
1842 1964 4.090819 TCCAAAAACTAATAACCAGGGGC 58.909 43.478 0.00 0.00 0.00 5.80
1856 1979 5.011023 GGTATCCATCCATCCATCCAAAAAC 59.989 44.000 0.00 0.00 0.00 2.43
1904 2147 1.202582 TCGCTCTGTCTAAAGGCAGAC 59.797 52.381 10.17 7.04 44.37 3.51
2029 2272 1.300697 GCACGTCAAGAAGGTCGGT 60.301 57.895 0.00 0.00 0.00 4.69
2103 2350 0.173935 CATTGAATGCGTGGCCACAT 59.826 50.000 34.16 19.27 0.00 3.21
2106 2353 0.322366 TCTCATTGAATGCGTGGCCA 60.322 50.000 0.00 0.00 0.00 5.36
2179 2426 0.895100 TCAACCAATGGCAGGAGCAC 60.895 55.000 0.00 0.00 44.61 4.40
2211 2458 3.069158 CCCATGGCAGGAGAAATTTCATC 59.931 47.826 19.99 13.35 0.00 2.92
2213 2460 2.225343 ACCCATGGCAGGAGAAATTTCA 60.225 45.455 19.99 0.00 0.00 2.69
2271 2518 6.844388 ACATATCCCAGGTAACACTCAAGATA 59.156 38.462 0.00 0.00 41.41 1.98
2279 2526 6.062095 AGCATTAACATATCCCAGGTAACAC 58.938 40.000 0.00 0.00 41.41 3.32
2307 2554 6.347888 CCGTCAAAAGGCGTTAGATAGAAAAA 60.348 38.462 0.00 0.00 0.00 1.94
2308 2555 5.121142 CCGTCAAAAGGCGTTAGATAGAAAA 59.879 40.000 0.00 0.00 0.00 2.29
2323 2570 5.912955 GTCAAATACAAGGTTCCGTCAAAAG 59.087 40.000 0.00 0.00 0.00 2.27
2330 2577 5.181245 ACATTCAGTCAAATACAAGGTTCCG 59.819 40.000 0.00 0.00 0.00 4.30
2355 2612 1.590238 CGTTCTGCTCTTTCTATGGCG 59.410 52.381 0.00 0.00 0.00 5.69
2372 2629 6.238648 CCAATCACCTTTAGAAACAAGACGTT 60.239 38.462 0.00 0.00 40.50 3.99
2374 2631 5.334879 CCCAATCACCTTTAGAAACAAGACG 60.335 44.000 0.00 0.00 0.00 4.18
2398 2655 1.585297 ACAAAAATGCAGCAACCAGC 58.415 45.000 0.00 0.00 46.19 4.85
2487 2791 3.485947 TGAGATAAAACCAATGCGCAC 57.514 42.857 14.90 0.00 0.00 5.34
2492 2796 9.612620 GAAGTACAACTTGAGATAAAACCAATG 57.387 33.333 0.00 0.00 38.80 2.82
2502 2807 6.365970 AGTCCATGAAGTACAACTTGAGAT 57.634 37.500 0.00 0.00 38.80 2.75
2513 2818 2.166459 CTCAGCCGAAGTCCATGAAGTA 59.834 50.000 0.00 0.00 0.00 2.24
2520 2825 5.831525 TCTATATAAACTCAGCCGAAGTCCA 59.168 40.000 0.00 0.00 0.00 4.02
2521 2826 6.328641 TCTATATAAACTCAGCCGAAGTCC 57.671 41.667 0.00 0.00 0.00 3.85
2564 2869 8.768957 AGATTCATCACGAGATATATTTGGTG 57.231 34.615 10.92 10.92 31.88 4.17
2596 2901 8.478877 AGAGTCGAACATCCAGAGTATTAAATT 58.521 33.333 0.00 0.00 0.00 1.82
2601 2906 5.923733 AAGAGTCGAACATCCAGAGTATT 57.076 39.130 0.00 0.00 0.00 1.89
2602 2907 5.923733 AAAGAGTCGAACATCCAGAGTAT 57.076 39.130 0.00 0.00 0.00 2.12
2664 3079 1.715585 CGCGTACAAGATGCCCAAG 59.284 57.895 0.00 0.00 36.65 3.61
2667 3082 0.600255 ATAGCGCGTACAAGATGCCC 60.600 55.000 8.43 0.00 36.65 5.36
2676 3091 3.063045 GCCCCAAAATATATAGCGCGTAC 59.937 47.826 8.43 0.00 0.00 3.67
2682 3123 5.560724 TCACTCTGCCCCAAAATATATAGC 58.439 41.667 0.00 0.00 0.00 2.97
2716 3159 2.308570 TGGATCCAAGTACATGTGCCTT 59.691 45.455 13.46 7.67 0.00 4.35
2731 3174 8.953368 AAATTTAGCTGAAAATGATTGGATCC 57.047 30.769 4.20 4.20 0.00 3.36
2746 3189 1.133025 CCGTGCCCTGAAATTTAGCTG 59.867 52.381 0.00 0.00 0.00 4.24
2784 3227 4.701651 TGGCTTGATTCCATAGAACAGTTG 59.298 41.667 0.00 0.00 33.97 3.16
2785 3228 4.922206 TGGCTTGATTCCATAGAACAGTT 58.078 39.130 0.00 0.00 33.97 3.16
2789 3232 6.705863 AATTCTGGCTTGATTCCATAGAAC 57.294 37.500 0.00 0.00 33.97 3.01
2797 3240 5.210715 CGAAGCATAATTCTGGCTTGATTC 58.789 41.667 13.78 3.71 47.00 2.52
2810 3253 6.016360 TGCCAGCAAATATTACGAAGCATAAT 60.016 34.615 0.00 0.00 0.00 1.28
2822 3301 7.546667 CAGTTGACTTAAATGCCAGCAAATATT 59.453 33.333 0.00 0.00 0.00 1.28
2823 3302 7.037438 CAGTTGACTTAAATGCCAGCAAATAT 58.963 34.615 0.00 0.00 0.00 1.28
2826 3305 4.340666 TCAGTTGACTTAAATGCCAGCAAA 59.659 37.500 0.00 0.00 34.50 3.68
2827 3306 3.888323 TCAGTTGACTTAAATGCCAGCAA 59.112 39.130 0.00 0.00 34.50 3.91
2828 3307 3.485394 TCAGTTGACTTAAATGCCAGCA 58.515 40.909 0.00 0.00 34.50 4.41
2829 3308 4.397417 AGATCAGTTGACTTAAATGCCAGC 59.603 41.667 0.00 0.00 34.50 4.85
2830 3309 5.220548 CGAGATCAGTTGACTTAAATGCCAG 60.221 44.000 0.00 0.00 34.50 4.85
2832 3311 4.870426 TCGAGATCAGTTGACTTAAATGCC 59.130 41.667 0.00 0.00 34.50 4.40
2833 3312 5.501574 GCTCGAGATCAGTTGACTTAAATGC 60.502 44.000 18.75 0.00 34.50 3.56
2847 3352 4.649674 ACCCAACTAATTAGCTCGAGATCA 59.350 41.667 18.75 0.35 0.00 2.92
2867 3372 8.154856 TGGTGCATCTAGAGTATATTTTTACCC 58.845 37.037 0.00 0.00 0.00 3.69
2895 3403 6.768483 TGTCAGTATCAGTTTCCTTGATTGA 58.232 36.000 0.00 0.00 36.68 2.57
2900 3408 4.318332 TGCTGTCAGTATCAGTTTCCTTG 58.682 43.478 0.93 0.00 35.60 3.61
2901 3409 4.623932 TGCTGTCAGTATCAGTTTCCTT 57.376 40.909 0.93 0.00 35.60 3.36
2903 3411 4.569943 TCTTGCTGTCAGTATCAGTTTCC 58.430 43.478 0.93 0.00 35.60 3.13
2917 3426 4.612264 AATGCTCCAAATTTCTTGCTGT 57.388 36.364 0.00 0.00 0.00 4.40
2953 3462 6.127952 GCCGTAACATTCACTGGGTATAAAAA 60.128 38.462 0.00 0.00 0.00 1.94
2954 3463 5.354792 GCCGTAACATTCACTGGGTATAAAA 59.645 40.000 0.00 0.00 0.00 1.52
3028 3537 6.276847 AGATGGTCTCAGAATTGTCGTAATC 58.723 40.000 0.00 0.00 0.00 1.75
3053 3562 4.104102 TCAGAATACAACCCCTGAAAGTGT 59.896 41.667 0.00 0.00 33.26 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.