Multiple sequence alignment - TraesCS4A01G267100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G267100 chr4A 100.000 6824 0 0 1 6824 579524895 579518072 0.000000e+00 12602.0
1 TraesCS4A01G267100 chr4A 82.733 1749 214 50 2370 4074 579520822 579522526 0.000000e+00 1476.0
2 TraesCS4A01G267100 chr4A 88.931 786 73 7 2372 3149 246689545 246690324 0.000000e+00 957.0
3 TraesCS4A01G267100 chr4A 86.830 858 73 13 3315 4141 246690324 246689476 0.000000e+00 922.0
4 TraesCS4A01G267100 chr4A 95.833 168 6 1 4776 4943 641380663 641380497 3.140000e-68 270.0
5 TraesCS4A01G267100 chr4A 82.979 94 12 3 251 342 661829397 661829306 1.580000e-11 82.4
6 TraesCS4A01G267100 chr4D 91.646 1580 94 14 2066 3621 22586132 22587697 0.000000e+00 2152.0
7 TraesCS4A01G267100 chr4D 96.187 1049 35 4 3716 4763 22588017 22589061 0.000000e+00 1711.0
8 TraesCS4A01G267100 chr4D 93.076 881 31 9 659 1531 22584667 22585525 0.000000e+00 1262.0
9 TraesCS4A01G267100 chr4D 90.089 787 64 7 2372 3149 123677386 123678167 0.000000e+00 1009.0
10 TraesCS4A01G267100 chr4D 81.642 1291 162 34 2835 4074 22587696 22586430 0.000000e+00 1002.0
11 TraesCS4A01G267100 chr4D 87.879 858 66 10 3315 4141 123678167 123677317 0.000000e+00 974.0
12 TraesCS4A01G267100 chr4D 94.796 538 25 3 1527 2063 22585558 22586093 0.000000e+00 835.0
13 TraesCS4A01G267100 chr4D 89.278 457 35 7 5689 6144 22590181 22590624 1.660000e-155 560.0
14 TraesCS4A01G267100 chr4D 85.792 549 30 17 138 643 22582808 22583351 7.790000e-149 538.0
15 TraesCS4A01G267100 chr4D 89.189 444 28 8 5240 5681 22589541 22589966 2.800000e-148 536.0
16 TraesCS4A01G267100 chr4D 94.760 229 10 2 4944 5171 22589056 22589283 8.420000e-94 355.0
17 TraesCS4A01G267100 chr4D 93.897 213 12 1 4137 4349 398052134 398052345 3.070000e-83 320.0
18 TraesCS4A01G267100 chr4D 87.273 275 25 6 6542 6809 22591674 22591945 8.600000e-79 305.0
19 TraesCS4A01G267100 chr4D 90.187 214 21 0 1850 2063 212399958 212399745 5.210000e-71 279.0
20 TraesCS4A01G267100 chr4D 90.278 72 3 1 5170 5241 22589508 22589575 2.620000e-14 91.6
21 TraesCS4A01G267100 chr4B 91.675 997 66 8 2064 3057 34573248 34574230 0.000000e+00 1365.0
22 TraesCS4A01G267100 chr4B 93.230 901 48 6 3244 4141 34574560 34575450 0.000000e+00 1314.0
23 TraesCS4A01G267100 chr4B 92.157 714 30 9 659 1369 34571316 34572006 0.000000e+00 985.0
24 TraesCS4A01G267100 chr4B 93.403 667 35 6 4138 4802 34579404 34580063 0.000000e+00 979.0
25 TraesCS4A01G267100 chr4B 93.494 538 30 5 1527 2063 34572676 34573209 0.000000e+00 795.0
26 TraesCS4A01G267100 chr4B 82.440 877 119 17 2372 3244 34575381 34574536 0.000000e+00 734.0
27 TraesCS4A01G267100 chr4B 94.266 436 18 6 5170 5604 34580449 34580878 0.000000e+00 660.0
28 TraesCS4A01G267100 chr4B 89.514 391 38 3 5689 6076 34581275 34581665 6.150000e-135 492.0
29 TraesCS4A01G267100 chr4B 92.366 262 17 2 4913 5171 34580126 34580387 3.010000e-98 370.0
30 TraesCS4A01G267100 chr4B 89.759 166 13 2 6653 6814 34582987 34583152 6.940000e-50 209.0
31 TraesCS4A01G267100 chr4B 84.328 134 18 3 6297 6429 34581877 34582008 2.000000e-25 128.0
32 TraesCS4A01G267100 chr4B 81.818 77 8 5 248 319 10784395 10784320 7.390000e-05 60.2
33 TraesCS4A01G267100 chrUn 89.962 787 65 7 2372 3149 189385007 189384226 0.000000e+00 1003.0
34 TraesCS4A01G267100 chrUn 87.879 858 66 13 3315 4141 189384226 189385076 0.000000e+00 974.0
35 TraesCS4A01G267100 chrUn 93.548 217 12 2 4137 4352 182440566 182440351 8.540000e-84 322.0
36 TraesCS4A01G267100 chrUn 95.882 170 6 1 4776 4944 74119615 74119446 2.420000e-69 274.0
37 TraesCS4A01G267100 chrUn 75.352 142 24 11 310 446 48727557 48727692 2.660000e-04 58.4
38 TraesCS4A01G267100 chr1A 89.581 787 68 7 2372 3149 94621807 94622588 0.000000e+00 987.0
39 TraesCS4A01G267100 chr1A 87.646 858 68 9 3315 4141 94622588 94621738 0.000000e+00 963.0
40 TraesCS4A01G267100 chr1A 96.364 165 6 0 4776 4940 49976743 49976907 8.720000e-69 272.0
41 TraesCS4A01G267100 chr5A 89.327 787 69 8 2372 3149 492870633 492871413 0.000000e+00 974.0
42 TraesCS4A01G267100 chr5A 87.529 858 68 9 3315 4141 492871413 492870564 0.000000e+00 955.0
43 TraesCS4A01G267100 chr5A 93.548 217 12 2 4137 4352 420171839 420171624 8.540000e-84 322.0
44 TraesCS4A01G267100 chr5A 89.302 215 21 2 1850 2063 708835263 708835050 1.130000e-67 268.0
45 TraesCS4A01G267100 chr5A 84.694 196 28 2 1850 2045 379041605 379041412 1.940000e-45 195.0
46 TraesCS4A01G267100 chr3A 89.072 787 69 9 2372 3149 725811667 725812445 0.000000e+00 961.0
47 TraesCS4A01G267100 chr3A 87.515 857 68 11 3315 4141 725812445 725811598 0.000000e+00 953.0
48 TraesCS4A01G267100 chr3A 86.592 537 51 9 1003 1520 128086486 128085952 2.130000e-159 573.0
49 TraesCS4A01G267100 chr3A 94.009 217 11 2 4137 4352 717313264 717313049 1.840000e-85 327.0
50 TraesCS4A01G267100 chr3A 84.305 223 25 8 5240 5458 128083000 128082784 6.940000e-50 209.0
51 TraesCS4A01G267100 chr3A 85.350 157 17 3 1697 1852 128085488 128085337 2.550000e-34 158.0
52 TraesCS4A01G267100 chr3A 83.621 116 17 2 2147 2262 465018167 465018280 2.600000e-19 108.0
53 TraesCS4A01G267100 chr3A 79.699 133 14 11 294 415 78713105 78713235 4.390000e-12 84.2
54 TraesCS4A01G267100 chr3B 85.064 549 60 13 1003 1534 173324294 173323751 2.170000e-149 540.0
55 TraesCS4A01G267100 chr3B 90.116 172 14 3 5689 5859 173320372 173320203 3.200000e-53 220.0
56 TraesCS4A01G267100 chr3B 86.957 115 11 1 1738 1852 173323249 173323139 7.180000e-25 126.0
57 TraesCS4A01G267100 chr3B 93.590 78 3 2 2255 2330 730109764 730109841 1.560000e-21 115.0
58 TraesCS4A01G267100 chr3D 84.673 535 63 12 1003 1520 121880872 121880340 3.650000e-142 516.0
59 TraesCS4A01G267100 chr3D 85.312 497 51 4 3667 4141 353224189 353223693 1.710000e-135 494.0
60 TraesCS4A01G267100 chr3D 86.374 433 48 3 2372 2797 353223762 353224190 4.820000e-126 462.0
61 TraesCS4A01G267100 chr3D 86.525 282 25 7 1003 1273 121735397 121735118 1.440000e-76 298.0
62 TraesCS4A01G267100 chr3D 84.064 251 34 5 1276 1520 121734986 121734736 3.180000e-58 237.0
63 TraesCS4A01G267100 chr3D 84.064 251 34 5 1276 1520 121802372 121802122 3.180000e-58 237.0
64 TraesCS4A01G267100 chr3D 86.538 104 12 2 2159 2260 440701088 440701191 5.590000e-21 113.0
65 TraesCS4A01G267100 chr3D 75.000 192 32 14 251 432 514003661 514003476 2.640000e-09 75.0
66 TraesCS4A01G267100 chr3D 79.545 88 12 2 321 402 374070296 374070209 2.660000e-04 58.4
67 TraesCS4A01G267100 chr6D 79.886 527 82 17 999 1520 16601687 16602194 1.400000e-96 364.0
68 TraesCS4A01G267100 chr6D 82.243 214 37 1 1850 2063 439772911 439772699 4.200000e-42 183.0
69 TraesCS4A01G267100 chr6D 85.714 168 19 4 2726 2892 159978104 159977941 9.100000e-39 172.0
70 TraesCS4A01G267100 chr7B 93.548 217 12 2 4137 4352 327258024 327257809 8.540000e-84 322.0
71 TraesCS4A01G267100 chr7B 94.798 173 8 1 4772 4943 705489050 705489222 1.130000e-67 268.0
72 TraesCS4A01G267100 chr7B 85.542 166 21 2 2097 2260 216117884 216117720 3.270000e-38 171.0
73 TraesCS4A01G267100 chr5B 93.925 214 11 2 4137 4349 130585674 130585886 8.540000e-84 322.0
74 TraesCS4A01G267100 chr5B 79.104 134 17 10 252 377 626352828 626352958 1.580000e-11 82.4
75 TraesCS4A01G267100 chr2D 93.519 216 13 1 4137 4352 306144002 306143788 3.070000e-83 320.0
76 TraesCS4A01G267100 chr6B 77.989 527 92 19 999 1520 29268214 29268721 6.650000e-80 309.0
77 TraesCS4A01G267100 chr6B 81.250 256 44 4 999 1252 29558215 29558468 3.230000e-48 204.0
78 TraesCS4A01G267100 chr6B 94.253 87 5 0 5736 5822 29559321 29559407 4.290000e-27 134.0
79 TraesCS4A01G267100 chr6B 76.687 163 26 10 251 403 20093926 20093766 5.670000e-11 80.5
80 TraesCS4A01G267100 chr6A 90.654 214 20 0 1850 2063 54981600 54981387 1.120000e-72 285.0
81 TraesCS4A01G267100 chr6A 96.951 164 5 0 4776 4939 98747562 98747399 6.740000e-70 276.0
82 TraesCS4A01G267100 chr6A 85.646 209 25 5 1850 2055 77111920 77111714 1.490000e-51 215.0
83 TraesCS4A01G267100 chr6A 82.243 214 35 3 1850 2063 10136282 10136492 1.510000e-41 182.0
84 TraesCS4A01G267100 chr6A 100.000 28 0 0 248 275 5347750 5347777 1.200000e-02 52.8
85 TraesCS4A01G267100 chr2A 97.576 165 4 0 4776 4940 683721488 683721324 4.030000e-72 283.0
86 TraesCS4A01G267100 chr1D 95.322 171 7 1 4774 4944 490423318 490423149 3.140000e-68 270.0
87 TraesCS4A01G267100 chr7A 92.513 187 12 2 4773 4958 97887582 97887397 4.060000e-67 267.0
88 TraesCS4A01G267100 chr7A 85.976 164 20 3 2099 2260 258367234 258367396 9.100000e-39 172.0
89 TraesCS4A01G267100 chr7A 87.255 102 13 0 2159 2260 114107306 114107407 4.320000e-22 117.0
90 TraesCS4A01G267100 chr7A 82.759 116 17 3 2157 2271 102290990 102290877 4.350000e-17 100.0
91 TraesCS4A01G267100 chr5D 92.228 193 7 8 4773 4961 92111716 92111528 4.060000e-67 267.0
92 TraesCS4A01G267100 chr5D 89.677 155 16 0 3720 3874 352855204 352855358 1.500000e-46 198.0
93 TraesCS4A01G267100 chr5D 82.222 90 12 3 252 339 509438258 509438345 2.640000e-09 75.0
94 TraesCS4A01G267100 chr7D 86.538 104 10 3 2159 2260 619451284 619451183 2.010000e-20 111.0
95 TraesCS4A01G267100 chr7D 77.885 104 14 8 321 416 366618227 366618125 1.000000e-03 56.5
96 TraesCS4A01G267100 chr2B 78.358 134 19 8 252 377 159843768 159843899 2.040000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G267100 chr4A 579518072 579524895 6823 True 12602.000000 12602 100.000000 1 6824 1 chr4A.!!$R2 6823
1 TraesCS4A01G267100 chr4A 579520822 579522526 1704 False 1476.000000 1476 82.733000 2370 4074 1 chr4A.!!$F2 1704
2 TraesCS4A01G267100 chr4A 246689545 246690324 779 False 957.000000 957 88.931000 2372 3149 1 chr4A.!!$F1 777
3 TraesCS4A01G267100 chr4A 246689476 246690324 848 True 922.000000 922 86.830000 3315 4141 1 chr4A.!!$R1 826
4 TraesCS4A01G267100 chr4D 123677386 123678167 781 False 1009.000000 1009 90.089000 2372 3149 1 chr4D.!!$F1 777
5 TraesCS4A01G267100 chr4D 22586430 22587696 1266 True 1002.000000 1002 81.642000 2835 4074 1 chr4D.!!$R1 1239
6 TraesCS4A01G267100 chr4D 123677317 123678167 850 True 974.000000 974 87.879000 3315 4141 1 chr4D.!!$R2 826
7 TraesCS4A01G267100 chr4D 22582808 22591945 9137 False 834.560000 2152 91.227500 138 6809 10 chr4D.!!$F3 6671
8 TraesCS4A01G267100 chr4B 34574536 34575381 845 True 734.000000 734 82.440000 2372 3244 1 chr4B.!!$R2 872
9 TraesCS4A01G267100 chr4B 34571316 34583152 11836 False 729.700000 1365 91.419200 659 6814 10 chr4B.!!$F1 6155
10 TraesCS4A01G267100 chrUn 189384226 189385007 781 True 1003.000000 1003 89.962000 2372 3149 1 chrUn.!!$R3 777
11 TraesCS4A01G267100 chrUn 189384226 189385076 850 False 974.000000 974 87.879000 3315 4141 1 chrUn.!!$F2 826
12 TraesCS4A01G267100 chr1A 94621807 94622588 781 False 987.000000 987 89.581000 2372 3149 1 chr1A.!!$F2 777
13 TraesCS4A01G267100 chr1A 94621738 94622588 850 True 963.000000 963 87.646000 3315 4141 1 chr1A.!!$R1 826
14 TraesCS4A01G267100 chr5A 492870633 492871413 780 False 974.000000 974 89.327000 2372 3149 1 chr5A.!!$F1 777
15 TraesCS4A01G267100 chr5A 492870564 492871413 849 True 955.000000 955 87.529000 3315 4141 1 chr5A.!!$R3 826
16 TraesCS4A01G267100 chr3A 725811667 725812445 778 False 961.000000 961 89.072000 2372 3149 1 chr3A.!!$F3 777
17 TraesCS4A01G267100 chr3A 725811598 725812445 847 True 953.000000 953 87.515000 3315 4141 1 chr3A.!!$R2 826
18 TraesCS4A01G267100 chr3A 128082784 128086486 3702 True 313.333333 573 85.415667 1003 5458 3 chr3A.!!$R3 4455
19 TraesCS4A01G267100 chr3B 173320203 173324294 4091 True 295.333333 540 87.379000 1003 5859 3 chr3B.!!$R1 4856
20 TraesCS4A01G267100 chr3D 121880340 121880872 532 True 516.000000 516 84.673000 1003 1520 1 chr3D.!!$R2 517
21 TraesCS4A01G267100 chr3D 121734736 121735397 661 True 267.500000 298 85.294500 1003 1520 2 chr3D.!!$R6 517
22 TraesCS4A01G267100 chr6D 16601687 16602194 507 False 364.000000 364 79.886000 999 1520 1 chr6D.!!$F1 521
23 TraesCS4A01G267100 chr6B 29268214 29268721 507 False 309.000000 309 77.989000 999 1520 1 chr6B.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.041312 CTTTTTCGGTGGTGCTCACG 60.041 55.000 5.05 0.0 46.96 4.35 F
717 2060 0.258774 AGGCATCCGTGGGCTTTATT 59.741 50.000 0.00 0.0 38.04 1.40 F
1955 4310 0.721718 CGACGCAATCTCAACCTTCC 59.278 55.000 0.00 0.0 0.00 3.46 F
2741 6674 0.254178 TCAATCCTCTGGCCTTCTGC 59.746 55.000 3.32 0.0 40.16 4.26 F
2870 6811 1.067821 CCGCTGGATCTGGTAGAACTC 59.932 57.143 0.00 0.0 0.00 3.01 F
4237 13099 1.136695 GCTGCATAGAGTCTGAGCTGT 59.863 52.381 19.30 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 4315 1.475213 CCTCCCTCAATCTTAACCGGC 60.475 57.143 0.00 0.0 0.00 6.13 R
2246 4640 0.041684 AGGCATTAGCAAAAGGGCCT 59.958 50.000 0.00 0.0 46.33 5.19 R
3204 7251 1.760029 TGGGATCGATGTCGGAAATGA 59.240 47.619 0.54 0.0 40.29 2.57 R
4046 8950 0.178831 AGATCCAGGGTCCCCAAGTT 60.179 55.000 3.51 0.0 38.92 2.66 R
4518 13381 0.658897 GAACTGACCGGTTTTCGCAA 59.341 50.000 9.42 0.0 37.59 4.85 R
6089 15770 0.179056 CAACCTCTGACGGGTGTTGT 60.179 55.000 8.04 0.0 36.99 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.611613 ATTAATCTCTCAAGTCACCTGTCA 57.388 37.500 0.00 0.00 0.00 3.58
24 25 6.611613 TTAATCTCTCAAGTCACCTGTCAT 57.388 37.500 0.00 0.00 0.00 3.06
25 26 4.734398 ATCTCTCAAGTCACCTGTCATC 57.266 45.455 0.00 0.00 0.00 2.92
26 27 2.489722 TCTCTCAAGTCACCTGTCATCG 59.510 50.000 0.00 0.00 0.00 3.84
27 28 1.546029 TCTCAAGTCACCTGTCATCGG 59.454 52.381 0.00 0.00 0.00 4.18
28 29 1.273606 CTCAAGTCACCTGTCATCGGT 59.726 52.381 0.00 0.00 34.38 4.69
32 33 2.347114 CACCTGTCATCGGTGCCA 59.653 61.111 0.00 0.00 44.70 4.92
33 34 1.302431 CACCTGTCATCGGTGCCAA 60.302 57.895 0.00 0.00 44.70 4.52
34 35 0.888736 CACCTGTCATCGGTGCCAAA 60.889 55.000 0.00 0.00 44.70 3.28
35 36 0.179004 ACCTGTCATCGGTGCCAAAA 60.179 50.000 0.00 0.00 32.41 2.44
36 37 0.240945 CCTGTCATCGGTGCCAAAAC 59.759 55.000 0.00 0.00 0.00 2.43
37 38 0.240945 CTGTCATCGGTGCCAAAACC 59.759 55.000 0.00 0.00 36.82 3.27
38 39 1.175983 TGTCATCGGTGCCAAAACCC 61.176 55.000 0.00 0.00 36.84 4.11
39 40 1.151679 TCATCGGTGCCAAAACCCA 59.848 52.632 0.00 0.00 36.84 4.51
40 41 0.468214 TCATCGGTGCCAAAACCCAA 60.468 50.000 0.00 0.00 36.84 4.12
41 42 0.607620 CATCGGTGCCAAAACCCAAT 59.392 50.000 0.00 0.00 36.84 3.16
42 43 1.001860 CATCGGTGCCAAAACCCAATT 59.998 47.619 0.00 0.00 36.84 2.32
43 44 1.996798 TCGGTGCCAAAACCCAATTA 58.003 45.000 0.00 0.00 36.84 1.40
44 45 2.317040 TCGGTGCCAAAACCCAATTAA 58.683 42.857 0.00 0.00 36.84 1.40
45 46 2.297597 TCGGTGCCAAAACCCAATTAAG 59.702 45.455 0.00 0.00 36.84 1.85
46 47 2.611722 CGGTGCCAAAACCCAATTAAGG 60.612 50.000 0.00 0.00 36.84 2.69
58 59 5.053978 CCCAATTAAGGGCTTAGATGTCT 57.946 43.478 0.00 0.00 43.10 3.41
59 60 5.449553 CCCAATTAAGGGCTTAGATGTCTT 58.550 41.667 0.00 0.00 43.10 3.01
60 61 5.893824 CCCAATTAAGGGCTTAGATGTCTTT 59.106 40.000 0.00 0.00 43.10 2.52
61 62 6.381133 CCCAATTAAGGGCTTAGATGTCTTTT 59.619 38.462 0.00 0.00 43.10 2.27
62 63 7.093333 CCCAATTAAGGGCTTAGATGTCTTTTT 60.093 37.037 0.00 0.00 43.10 1.94
63 64 7.976175 CCAATTAAGGGCTTAGATGTCTTTTTC 59.024 37.037 0.00 0.00 0.00 2.29
64 65 6.737254 TTAAGGGCTTAGATGTCTTTTTCG 57.263 37.500 0.00 0.00 0.00 3.46
65 66 3.610911 AGGGCTTAGATGTCTTTTTCGG 58.389 45.455 0.00 0.00 0.00 4.30
66 67 3.009143 AGGGCTTAGATGTCTTTTTCGGT 59.991 43.478 0.00 0.00 0.00 4.69
67 68 3.127030 GGGCTTAGATGTCTTTTTCGGTG 59.873 47.826 0.00 0.00 0.00 4.94
68 69 3.127030 GGCTTAGATGTCTTTTTCGGTGG 59.873 47.826 0.00 0.00 0.00 4.61
69 70 3.751698 GCTTAGATGTCTTTTTCGGTGGT 59.248 43.478 0.00 0.00 0.00 4.16
70 71 4.378459 GCTTAGATGTCTTTTTCGGTGGTG 60.378 45.833 0.00 0.00 0.00 4.17
71 72 1.880027 AGATGTCTTTTTCGGTGGTGC 59.120 47.619 0.00 0.00 0.00 5.01
72 73 1.880027 GATGTCTTTTTCGGTGGTGCT 59.120 47.619 0.00 0.00 0.00 4.40
73 74 1.305201 TGTCTTTTTCGGTGGTGCTC 58.695 50.000 0.00 0.00 0.00 4.26
74 75 1.305201 GTCTTTTTCGGTGGTGCTCA 58.695 50.000 0.00 0.00 0.00 4.26
75 76 1.002792 GTCTTTTTCGGTGGTGCTCAC 60.003 52.381 2.79 2.79 45.34 3.51
76 77 0.041312 CTTTTTCGGTGGTGCTCACG 60.041 55.000 5.05 0.00 46.96 4.35
77 78 0.462225 TTTTTCGGTGGTGCTCACGA 60.462 50.000 0.00 0.00 46.96 4.35
78 79 1.155424 TTTTCGGTGGTGCTCACGAC 61.155 55.000 6.61 6.61 46.96 4.34
79 80 2.023414 TTTCGGTGGTGCTCACGACT 62.023 55.000 13.38 0.00 46.96 4.18
80 81 2.693250 TTCGGTGGTGCTCACGACTG 62.693 60.000 15.09 15.09 46.96 3.51
81 82 2.357517 GGTGGTGCTCACGACTGG 60.358 66.667 13.38 0.00 46.96 4.00
82 83 2.357517 GTGGTGCTCACGACTGGG 60.358 66.667 7.73 0.00 37.13 4.45
83 84 4.314440 TGGTGCTCACGACTGGGC 62.314 66.667 0.00 0.00 45.24 5.36
84 85 4.008933 GGTGCTCACGACTGGGCT 62.009 66.667 0.00 0.00 45.25 5.19
85 86 2.031163 GTGCTCACGACTGGGCTT 59.969 61.111 0.00 0.00 45.25 4.35
86 87 1.598130 GTGCTCACGACTGGGCTTT 60.598 57.895 0.00 0.00 45.25 3.51
87 88 1.597854 TGCTCACGACTGGGCTTTG 60.598 57.895 0.00 0.00 45.25 2.77
88 89 1.301716 GCTCACGACTGGGCTTTGA 60.302 57.895 0.00 0.00 41.23 2.69
89 90 0.884704 GCTCACGACTGGGCTTTGAA 60.885 55.000 0.00 0.00 41.23 2.69
90 91 1.151668 CTCACGACTGGGCTTTGAAG 58.848 55.000 0.00 0.00 0.00 3.02
91 92 0.756294 TCACGACTGGGCTTTGAAGA 59.244 50.000 0.00 0.00 0.00 2.87
92 93 1.347707 TCACGACTGGGCTTTGAAGAT 59.652 47.619 0.00 0.00 0.00 2.40
93 94 1.466167 CACGACTGGGCTTTGAAGATG 59.534 52.381 0.00 0.00 0.00 2.90
94 95 0.449388 CGACTGGGCTTTGAAGATGC 59.551 55.000 0.00 0.00 0.00 3.91
95 96 0.813821 GACTGGGCTTTGAAGATGCC 59.186 55.000 0.00 0.00 45.47 4.40
96 97 0.407139 ACTGGGCTTTGAAGATGCCT 59.593 50.000 0.00 0.00 45.49 4.75
97 98 1.203100 ACTGGGCTTTGAAGATGCCTT 60.203 47.619 0.00 0.00 45.49 4.35
98 99 2.041620 ACTGGGCTTTGAAGATGCCTTA 59.958 45.455 0.00 0.00 45.49 2.69
99 100 2.424956 CTGGGCTTTGAAGATGCCTTAC 59.575 50.000 0.00 0.00 45.49 2.34
100 101 2.224992 TGGGCTTTGAAGATGCCTTACA 60.225 45.455 0.00 0.00 45.49 2.41
101 102 2.825532 GGGCTTTGAAGATGCCTTACAA 59.174 45.455 0.00 0.00 45.49 2.41
102 103 3.119352 GGGCTTTGAAGATGCCTTACAAG 60.119 47.826 0.00 0.00 45.49 3.16
103 104 3.505836 GCTTTGAAGATGCCTTACAAGC 58.494 45.455 0.00 0.00 38.89 4.01
104 105 3.751621 CTTTGAAGATGCCTTACAAGCG 58.248 45.455 0.00 0.00 31.62 4.68
105 106 2.472695 TGAAGATGCCTTACAAGCGT 57.527 45.000 0.00 0.00 31.62 5.07
106 107 3.603158 TGAAGATGCCTTACAAGCGTA 57.397 42.857 0.00 0.00 31.62 4.42
107 108 3.932822 TGAAGATGCCTTACAAGCGTAA 58.067 40.909 0.00 0.00 36.20 3.18
108 109 4.320023 TGAAGATGCCTTACAAGCGTAAA 58.680 39.130 0.00 0.00 37.16 2.01
109 110 4.757657 TGAAGATGCCTTACAAGCGTAAAA 59.242 37.500 0.00 0.00 37.16 1.52
110 111 4.946784 AGATGCCTTACAAGCGTAAAAG 57.053 40.909 0.00 0.00 37.16 2.27
111 112 3.689649 AGATGCCTTACAAGCGTAAAAGG 59.310 43.478 7.54 7.54 37.16 3.11
112 113 3.128852 TGCCTTACAAGCGTAAAAGGA 57.871 42.857 13.94 0.58 37.16 3.36
113 114 3.681593 TGCCTTACAAGCGTAAAAGGAT 58.318 40.909 13.94 0.00 37.16 3.24
114 115 3.438781 TGCCTTACAAGCGTAAAAGGATG 59.561 43.478 13.94 0.00 37.16 3.51
115 116 3.687698 GCCTTACAAGCGTAAAAGGATGA 59.312 43.478 13.94 0.00 37.16 2.92
116 117 4.155280 GCCTTACAAGCGTAAAAGGATGAA 59.845 41.667 13.94 0.00 37.16 2.57
117 118 5.163652 GCCTTACAAGCGTAAAAGGATGAAT 60.164 40.000 13.94 0.00 37.16 2.57
118 119 6.258160 CCTTACAAGCGTAAAAGGATGAATG 58.742 40.000 6.39 0.00 37.16 2.67
119 120 4.096732 ACAAGCGTAAAAGGATGAATGC 57.903 40.909 0.00 0.00 0.00 3.56
120 121 3.505680 ACAAGCGTAAAAGGATGAATGCA 59.494 39.130 0.00 0.00 0.00 3.96
121 122 3.764885 AGCGTAAAAGGATGAATGCAC 57.235 42.857 0.00 0.00 0.00 4.57
122 123 3.347216 AGCGTAAAAGGATGAATGCACT 58.653 40.909 0.00 0.00 0.00 4.40
123 124 3.375299 AGCGTAAAAGGATGAATGCACTC 59.625 43.478 0.00 0.00 0.00 3.51
124 125 3.126858 GCGTAAAAGGATGAATGCACTCA 59.873 43.478 0.00 0.00 0.00 3.41
125 126 4.201950 GCGTAAAAGGATGAATGCACTCAT 60.202 41.667 11.02 11.02 38.79 2.90
126 127 5.677091 GCGTAAAAGGATGAATGCACTCATT 60.677 40.000 12.58 0.00 45.04 2.57
127 128 5.740569 CGTAAAAGGATGAATGCACTCATTG 59.259 40.000 12.58 0.00 42.60 2.82
128 129 5.988310 AAAAGGATGAATGCACTCATTGA 57.012 34.783 12.58 0.00 42.60 2.57
129 130 6.540438 AAAAGGATGAATGCACTCATTGAT 57.460 33.333 12.58 0.00 42.60 2.57
130 131 5.515797 AAGGATGAATGCACTCATTGATG 57.484 39.130 12.58 0.00 42.60 3.07
131 132 3.318275 AGGATGAATGCACTCATTGATGC 59.682 43.478 12.58 0.00 42.05 3.91
132 133 2.836479 TGAATGCACTCATTGATGCG 57.164 45.000 0.00 0.00 45.13 4.73
133 134 2.086094 TGAATGCACTCATTGATGCGT 58.914 42.857 0.00 10.99 45.13 5.24
134 135 2.159490 TGAATGCACTCATTGATGCGTG 60.159 45.455 9.19 9.19 45.13 5.34
135 136 1.741528 ATGCACTCATTGATGCGTGA 58.258 45.000 15.98 4.25 44.03 4.35
136 137 1.081094 TGCACTCATTGATGCGTGAG 58.919 50.000 15.98 4.23 44.03 3.51
161 162 2.348888 CGTAGGGGCGTGGAAGACT 61.349 63.158 0.00 0.00 0.00 3.24
166 167 1.671742 GGGCGTGGAAGACTTGAGA 59.328 57.895 0.00 0.00 0.00 3.27
170 171 1.269831 GCGTGGAAGACTTGAGAGTGT 60.270 52.381 0.00 0.00 35.88 3.55
204 205 4.802051 AGGATGCATGGCCGCGTT 62.802 61.111 2.46 0.00 33.35 4.84
207 208 4.118995 ATGCATGGCCGCGTTGTG 62.119 61.111 4.92 0.00 33.35 3.33
231 232 0.908910 TCGATGGTTGCCAGGTATGT 59.091 50.000 0.00 0.00 36.75 2.29
242 243 0.914417 CAGGTATGTCTGGTGGGGGT 60.914 60.000 0.00 0.00 0.00 4.95
243 244 0.720232 AGGTATGTCTGGTGGGGGTA 59.280 55.000 0.00 0.00 0.00 3.69
244 245 1.129058 GGTATGTCTGGTGGGGGTAG 58.871 60.000 0.00 0.00 0.00 3.18
246 247 1.020462 TATGTCTGGTGGGGGTAGGA 58.980 55.000 0.00 0.00 0.00 2.94
247 248 0.346932 ATGTCTGGTGGGGGTAGGAT 59.653 55.000 0.00 0.00 0.00 3.24
250 251 1.064685 GTCTGGTGGGGGTAGGATTTG 60.065 57.143 0.00 0.00 0.00 2.32
260 264 4.086457 GGGGTAGGATTTGAAAAAGCTCA 58.914 43.478 0.00 0.00 0.00 4.26
421 444 7.145985 GGAAAAGTTCAGGTATTTGAGGAAAC 58.854 38.462 0.00 0.00 0.00 2.78
430 453 6.039270 CAGGTATTTGAGGAAACAAGTTCACA 59.961 38.462 0.00 0.00 38.06 3.58
438 461 7.035004 TGAGGAAACAAGTTCACAAATTTGAG 58.965 34.615 24.64 16.73 38.06 3.02
440 463 7.035612 AGGAAACAAGTTCACAAATTTGAGAC 58.964 34.615 24.64 17.24 38.06 3.36
525 568 7.935520 AGAAGTTCAAGAATCTGGAAAAGTTC 58.064 34.615 0.92 6.08 0.00 3.01
566 609 9.894439 ACACGATTTTGAAAAAGTAAAAATTCG 57.106 25.926 0.00 0.00 34.51 3.34
631 675 1.528161 GTTGGTTACTCCGGTTTGACG 59.472 52.381 0.00 0.00 39.52 4.35
636 694 1.950828 TACTCCGGTTTGACGCAAAA 58.049 45.000 0.00 0.00 35.03 2.44
715 2058 1.223487 GAGGCATCCGTGGGCTTTA 59.777 57.895 0.00 0.00 41.74 1.85
717 2060 0.258774 AGGCATCCGTGGGCTTTATT 59.741 50.000 0.00 0.00 38.04 1.40
809 2152 4.109675 CCCCATCCCACCACGTCC 62.110 72.222 0.00 0.00 0.00 4.79
904 2248 4.400961 GCCAAGGACAGCGCCTCT 62.401 66.667 2.29 0.00 37.26 3.69
1250 2615 3.726517 CACGCCGCCAAGTTGGAG 61.727 66.667 26.52 22.08 40.96 3.86
1251 2616 3.936203 ACGCCGCCAAGTTGGAGA 61.936 61.111 26.52 0.00 39.92 3.71
1273 2638 2.659897 GCTGTAGGCGGCGATCTG 60.660 66.667 12.98 2.45 37.24 2.90
1364 2870 1.351017 TCCCTGTTCCACACATTCCTC 59.649 52.381 0.00 0.00 33.76 3.71
1374 3355 5.734720 TCCACACATTCCTCTGATTTAGTC 58.265 41.667 0.00 0.00 0.00 2.59
1399 3385 2.367567 TCTTTGTAGTTCCGCTGAAGGT 59.632 45.455 0.00 0.00 0.00 3.50
1407 3393 1.808411 TCCGCTGAAGGTTTGATGTC 58.192 50.000 0.00 0.00 0.00 3.06
1492 3482 5.850557 TTTGTTCTCCAATGTTGTGATGT 57.149 34.783 0.00 0.00 31.81 3.06
1629 3685 4.742438 TCAAAACCTCTCGATTTTTCCG 57.258 40.909 0.00 0.00 0.00 4.30
1718 4073 7.300556 TCCTGGAAAATGATGATTGAAACAA 57.699 32.000 0.00 0.00 0.00 2.83
1725 4080 6.923199 AATGATGATTGAAACAAGACCCTT 57.077 33.333 0.00 0.00 0.00 3.95
1726 4081 6.923199 ATGATGATTGAAACAAGACCCTTT 57.077 33.333 0.00 0.00 0.00 3.11
1918 4273 3.741476 CCAAGCCGCTGCCACTTC 61.741 66.667 0.00 0.00 38.69 3.01
1930 4285 2.430332 CTGCCACTTCCCTTGTTTGAAA 59.570 45.455 0.00 0.00 0.00 2.69
1955 4310 0.721718 CGACGCAATCTCAACCTTCC 59.278 55.000 0.00 0.00 0.00 3.46
1960 4315 1.734465 GCAATCTCAACCTTCCTGACG 59.266 52.381 0.00 0.00 0.00 4.35
2003 4358 8.045720 AGGGTGTTAGAATCCATGTTGTATAT 57.954 34.615 0.00 0.00 0.00 0.86
2099 4492 3.735591 GTACAACCACAGCTTACAAGGA 58.264 45.455 0.00 0.00 0.00 3.36
2219 4612 3.284617 GTTATTGGATTAGGGGCGTGTT 58.715 45.455 0.00 0.00 0.00 3.32
2250 4644 4.980903 CGTTGCAACGCACAGGCC 62.981 66.667 35.89 3.35 46.06 5.19
2288 4682 6.995091 CCTACCAAAGGGAGAAGATTATTGAG 59.005 42.308 0.00 0.00 42.32 3.02
2335 4732 6.293698 TCTAAAATATTTAGGGAACGGGCTC 58.706 40.000 0.01 0.00 0.00 4.70
2391 4788 2.258109 GCCGATAAATCTAGGGTCCCT 58.742 52.381 16.73 16.73 37.71 4.20
2400 4797 3.930035 ATCTAGGGTCCCTAGGTCAAAG 58.070 50.000 35.34 17.98 43.46 2.77
2456 5109 4.734398 TTTTCGGGGCTACTATTCGTAA 57.266 40.909 0.00 0.00 0.00 3.18
2738 6671 2.016096 GCACTCAATCCTCTGGCCTTC 61.016 57.143 3.32 0.00 0.00 3.46
2739 6672 1.558756 CACTCAATCCTCTGGCCTTCT 59.441 52.381 3.32 0.00 0.00 2.85
2740 6673 1.558756 ACTCAATCCTCTGGCCTTCTG 59.441 52.381 3.32 0.00 0.00 3.02
2741 6674 0.254178 TCAATCCTCTGGCCTTCTGC 59.746 55.000 3.32 0.00 40.16 4.26
2800 6733 3.509442 TCAAAATGGCAGGGACTTCAAT 58.491 40.909 0.00 0.00 34.60 2.57
2863 6804 3.721172 ATCCCCCGCTGGATCTGGT 62.721 63.158 0.00 0.00 41.38 4.00
2870 6811 1.067821 CCGCTGGATCTGGTAGAACTC 59.932 57.143 0.00 0.00 0.00 3.01
2974 6915 8.435982 TCAAAAAGAAATCCATGGGTAAACAAT 58.564 29.630 13.02 0.00 0.00 2.71
3102 7125 3.268072 AGAAGGAAAGGCAATTCTAGGCT 59.732 43.478 0.00 0.00 44.54 4.58
3204 7251 5.105392 TCAACACATTCTTTGTCAAGGCTTT 60.105 36.000 0.00 0.00 36.00 3.51
3223 7270 2.526304 TCATTTCCGACATCGATCCC 57.474 50.000 2.09 0.00 43.02 3.85
3443 8060 8.235855 TCTTAATAGGGGGATGATTCATCATT 57.764 34.615 24.26 17.29 46.84 2.57
3518 8136 4.083696 CCATGGATTTTGCTTTGAAACTGC 60.084 41.667 5.56 0.00 0.00 4.40
3560 8185 7.664318 GGAGAAAGTTTACCAAATCCTGTAGAA 59.336 37.037 6.48 0.00 0.00 2.10
3588 8213 2.546494 GCAGACGCACAGCCAGTTT 61.546 57.895 0.00 0.00 38.36 2.66
3630 8255 2.789917 CTCAACCTGCAGATGCGC 59.210 61.111 17.39 0.00 45.83 6.09
3631 8256 2.747460 TCAACCTGCAGATGCGCC 60.747 61.111 17.39 0.00 45.83 6.53
3632 8257 3.818787 CAACCTGCAGATGCGCCC 61.819 66.667 17.39 0.00 45.83 6.13
3714 8352 3.784763 AGGTTCAGTCATCCTTGGATCAT 59.215 43.478 0.00 0.00 0.00 2.45
4148 13009 4.202243 TGCTTGCCTATTTTTCAACTGCTT 60.202 37.500 0.00 0.00 0.00 3.91
4237 13099 1.136695 GCTGCATAGAGTCTGAGCTGT 59.863 52.381 19.30 0.00 0.00 4.40
4252 13114 3.953612 TGAGCTGTGTGGAATTGAAGTTT 59.046 39.130 0.00 0.00 0.00 2.66
4413 13276 4.283467 GGGCCAAATTCAAGTCTTTAACCT 59.717 41.667 4.39 0.00 0.00 3.50
4478 13341 8.561738 TGTTATCTTTCTATTTCACAGGGTTC 57.438 34.615 0.00 0.00 0.00 3.62
4582 13445 3.556365 GTCCATAGAGCTTAAGAAACCGC 59.444 47.826 6.67 0.00 0.00 5.68
4583 13446 3.196901 TCCATAGAGCTTAAGAAACCGCA 59.803 43.478 6.67 0.00 0.00 5.69
4589 13452 0.865769 CTTAAGAAACCGCACGTGCT 59.134 50.000 35.27 19.22 39.32 4.40
4601 13464 2.281070 CGTGCTGCCAGTTCCTGT 60.281 61.111 0.00 0.00 0.00 4.00
4602 13465 1.893808 CGTGCTGCCAGTTCCTGTT 60.894 57.895 0.00 0.00 0.00 3.16
4632 13495 1.071471 CTGACCAGCAGTCCGGTTT 59.929 57.895 0.00 0.00 45.68 3.27
4763 13830 5.593010 GTGGACTAATAGCCTACAGAGTTG 58.407 45.833 3.23 0.00 0.00 3.16
4784 13851 6.439058 AGTTGCATATCTCTTATACTCCCTCC 59.561 42.308 0.00 0.00 0.00 4.30
4787 13854 5.419471 GCATATCTCTTATACTCCCTCCGTT 59.581 44.000 0.00 0.00 0.00 4.44
4789 13856 3.830121 TCTCTTATACTCCCTCCGTTCC 58.170 50.000 0.00 0.00 0.00 3.62
4790 13857 3.462579 TCTCTTATACTCCCTCCGTTCCT 59.537 47.826 0.00 0.00 0.00 3.36
4796 13863 8.175431 TCTTATACTCCCTCCGTTCCTAAATAT 58.825 37.037 0.00 0.00 0.00 1.28
4802 13869 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4804 13871 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4805 13872 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4806 13873 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4808 13875 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4809 13876 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4824 13891 9.996554 TGTCTTTCTAGATATTTCAACAAGTGA 57.003 29.630 0.00 0.00 31.86 3.41
4833 13900 9.302345 AGATATTTCAACAAGTGACTACATACG 57.698 33.333 0.00 0.00 35.39 3.06
4834 13901 6.721571 ATTTCAACAAGTGACTACATACGG 57.278 37.500 0.00 0.00 35.39 4.02
4835 13902 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
4836 13903 5.456548 TCAACAAGTGACTACATACGGAA 57.543 39.130 0.00 0.00 0.00 4.30
4837 13904 5.224888 TCAACAAGTGACTACATACGGAAC 58.775 41.667 0.00 0.00 0.00 3.62
4838 13905 4.859304 ACAAGTGACTACATACGGAACA 57.141 40.909 0.00 0.00 0.00 3.18
4839 13906 5.204409 ACAAGTGACTACATACGGAACAA 57.796 39.130 0.00 0.00 0.00 2.83
4840 13907 5.603596 ACAAGTGACTACATACGGAACAAA 58.396 37.500 0.00 0.00 0.00 2.83
4841 13908 6.050432 ACAAGTGACTACATACGGAACAAAA 58.950 36.000 0.00 0.00 0.00 2.44
4842 13909 6.708949 ACAAGTGACTACATACGGAACAAAAT 59.291 34.615 0.00 0.00 0.00 1.82
4843 13910 6.721571 AGTGACTACATACGGAACAAAATG 57.278 37.500 0.00 0.00 0.00 2.32
4844 13911 6.460781 AGTGACTACATACGGAACAAAATGA 58.539 36.000 0.00 0.00 0.00 2.57
4845 13912 6.590292 AGTGACTACATACGGAACAAAATGAG 59.410 38.462 0.00 0.00 0.00 2.90
4846 13913 6.367969 GTGACTACATACGGAACAAAATGAGT 59.632 38.462 0.00 0.00 0.00 3.41
4847 13914 6.367695 TGACTACATACGGAACAAAATGAGTG 59.632 38.462 0.00 0.00 0.00 3.51
4848 13915 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
4849 13916 6.932400 ACTACATACGGAACAAAATGAGTGAA 59.068 34.615 0.00 0.00 0.00 3.18
4850 13917 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
4851 13918 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
4852 13919 6.655003 ACATACGGAACAAAATGAGTGAATCT 59.345 34.615 0.00 0.00 0.00 2.40
4853 13920 7.822334 ACATACGGAACAAAATGAGTGAATCTA 59.178 33.333 0.00 0.00 0.00 1.98
4854 13921 6.481954 ACGGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
4855 13922 5.995282 ACGGAACAAAATGAGTGAATCTACA 59.005 36.000 0.00 0.00 0.00 2.74
4856 13923 6.073222 ACGGAACAAAATGAGTGAATCTACAC 60.073 38.462 0.00 0.00 40.60 2.90
4889 13956 7.956328 ATGTCTACATACATCCGTATATGGT 57.044 36.000 10.85 0.00 35.08 3.55
4891 13958 8.502105 TGTCTACATACATCCGTATATGGTAG 57.498 38.462 10.85 7.27 36.11 3.18
4892 13959 7.066645 TGTCTACATACATCCGTATATGGTAGC 59.933 40.741 10.85 1.98 36.11 3.58
4893 13960 5.593679 ACATACATCCGTATATGGTAGCC 57.406 43.478 10.85 0.00 36.11 3.93
4894 13961 5.020795 ACATACATCCGTATATGGTAGCCA 58.979 41.667 10.85 0.00 36.11 4.75
4895 13962 5.661312 ACATACATCCGTATATGGTAGCCAT 59.339 40.000 10.85 5.92 46.99 4.40
4896 13963 6.156256 ACATACATCCGTATATGGTAGCCATT 59.844 38.462 10.85 0.00 44.61 3.16
4897 13964 5.499004 ACATCCGTATATGGTAGCCATTT 57.501 39.130 10.85 1.41 42.23 2.32
4898 13965 5.245531 ACATCCGTATATGGTAGCCATTTG 58.754 41.667 10.85 1.21 42.23 2.32
4899 13966 5.012664 ACATCCGTATATGGTAGCCATTTGA 59.987 40.000 10.85 0.00 42.23 2.69
4900 13967 5.554437 TCCGTATATGGTAGCCATTTGAA 57.446 39.130 10.85 0.00 42.23 2.69
4901 13968 5.931294 TCCGTATATGGTAGCCATTTGAAA 58.069 37.500 10.85 0.00 42.23 2.69
4902 13969 6.539173 TCCGTATATGGTAGCCATTTGAAAT 58.461 36.000 10.85 0.00 42.23 2.17
4903 13970 6.429692 TCCGTATATGGTAGCCATTTGAAATG 59.570 38.462 10.84 10.84 42.23 2.32
4904 13971 6.206634 CCGTATATGGTAGCCATTTGAAATGT 59.793 38.462 15.93 2.12 42.23 2.71
4905 13972 7.298122 CGTATATGGTAGCCATTTGAAATGTC 58.702 38.462 15.93 3.96 42.23 3.06
4906 13973 7.173218 CGTATATGGTAGCCATTTGAAATGTCT 59.827 37.037 15.93 11.47 42.23 3.41
4907 13974 9.502091 GTATATGGTAGCCATTTGAAATGTCTA 57.498 33.333 15.93 10.48 42.23 2.59
4908 13975 6.949352 ATGGTAGCCATTTGAAATGTCTAG 57.051 37.500 15.93 2.82 42.23 2.43
4909 13976 6.061022 TGGTAGCCATTTGAAATGTCTAGA 57.939 37.500 15.93 1.26 0.00 2.43
4910 13977 6.480763 TGGTAGCCATTTGAAATGTCTAGAA 58.519 36.000 15.93 2.55 0.00 2.10
4911 13978 6.945435 TGGTAGCCATTTGAAATGTCTAGAAA 59.055 34.615 15.93 0.00 0.00 2.52
4932 13999 8.265165 AGAAAGACAATTATTTAGGAACGGAC 57.735 34.615 0.00 0.00 0.00 4.79
4994 14063 5.163794 GGTGTACCGTGGACTGATAAAATTG 60.164 44.000 0.00 0.00 0.00 2.32
5024 14093 6.070656 TCACTTCATTGGGTTTCATTTCTCT 58.929 36.000 0.00 0.00 0.00 3.10
5035 14104 7.878127 TGGGTTTCATTTCTCTACTTCTAACAG 59.122 37.037 0.00 0.00 0.00 3.16
5152 14221 6.710744 CCAATACAGAGAACACTACCAAGTTT 59.289 38.462 0.00 0.00 31.97 2.66
5155 14224 5.116882 ACAGAGAACACTACCAAGTTTCAC 58.883 41.667 0.00 0.00 31.97 3.18
5156 14225 5.116180 CAGAGAACACTACCAAGTTTCACA 58.884 41.667 0.00 0.00 31.97 3.58
5157 14226 5.235186 CAGAGAACACTACCAAGTTTCACAG 59.765 44.000 0.00 0.00 31.97 3.66
5158 14227 5.128827 AGAGAACACTACCAAGTTTCACAGA 59.871 40.000 0.00 0.00 31.97 3.41
5159 14228 5.930135 AGAACACTACCAAGTTTCACAGAT 58.070 37.500 0.00 0.00 31.97 2.90
5162 14231 7.990886 AGAACACTACCAAGTTTCACAGATTTA 59.009 33.333 0.00 0.00 31.97 1.40
5163 14232 8.691661 AACACTACCAAGTTTCACAGATTTAT 57.308 30.769 0.00 0.00 31.97 1.40
5164 14233 8.324163 ACACTACCAAGTTTCACAGATTTATC 57.676 34.615 0.00 0.00 31.97 1.75
5168 14466 6.899114 ACCAAGTTTCACAGATTTATCGAAC 58.101 36.000 0.00 0.00 0.00 3.95
5223 14521 6.376018 AGTTTGTACTTGCTTGTTTCACCTAA 59.624 34.615 0.00 0.00 0.00 2.69
5286 14584 5.230942 ACTACAGTCAACATGAAGTAGCAC 58.769 41.667 0.00 0.00 39.16 4.40
5287 14585 4.342862 ACAGTCAACATGAAGTAGCACT 57.657 40.909 0.00 0.00 0.00 4.40
5288 14586 4.708177 ACAGTCAACATGAAGTAGCACTT 58.292 39.130 0.00 1.82 41.95 3.16
5289 14587 5.853936 ACAGTCAACATGAAGTAGCACTTA 58.146 37.500 0.00 0.00 38.80 2.24
5290 14588 6.467677 ACAGTCAACATGAAGTAGCACTTAT 58.532 36.000 0.00 0.00 38.80 1.73
5338 14636 2.710724 GAACGCGTGGTTGGAGGACT 62.711 60.000 14.98 0.00 39.50 3.85
5346 14645 2.105993 GTGGTTGGAGGACTTTACACCT 59.894 50.000 0.00 0.00 39.41 4.00
5357 14656 6.628185 AGGACTTTACACCTACAAAGTATCG 58.372 40.000 0.05 0.00 43.27 2.92
5358 14657 5.290400 GGACTTTACACCTACAAAGTATCGC 59.710 44.000 0.05 0.00 43.27 4.58
5436 14737 1.544314 GGAGGAGGCTGGCAATATGTC 60.544 57.143 3.38 0.00 0.00 3.06
5576 14915 5.106038 ACTGACATGCATGGAGTGTTATTTG 60.106 40.000 29.41 2.46 0.00 2.32
5681 15127 0.675083 TCGGACGTTCCAGTTGCTAA 59.325 50.000 0.00 0.00 35.91 3.09
5682 15128 1.068895 TCGGACGTTCCAGTTGCTAAA 59.931 47.619 0.00 0.00 35.91 1.85
5684 15130 2.096417 CGGACGTTCCAGTTGCTAAAAG 60.096 50.000 0.00 0.00 35.91 2.27
5686 15132 3.186613 GGACGTTCCAGTTGCTAAAAGAG 59.813 47.826 0.00 0.00 36.28 2.85
5687 15133 6.371681 GGACGTTCCAGTTGCTAAAAGAGC 62.372 50.000 0.00 0.00 43.58 4.09
5850 15530 4.728534 TGGTTTGTTTTTGAAGTGTCGAG 58.271 39.130 0.00 0.00 0.00 4.04
5859 15539 3.371102 TGAAGTGTCGAGTTGGAGAAG 57.629 47.619 0.00 0.00 0.00 2.85
5878 15559 2.654863 AGTATGTGCTGTTATTGGGCC 58.345 47.619 0.00 0.00 0.00 5.80
5903 15584 5.587388 AGCATGTTTGGGACATTGAATAG 57.413 39.130 0.00 0.00 46.80 1.73
5906 15587 6.663093 AGCATGTTTGGGACATTGAATAGTTA 59.337 34.615 0.00 0.00 46.80 2.24
5929 15610 3.574396 TGTTGTAATTTGGATCCCGCAAA 59.426 39.130 9.90 3.55 0.00 3.68
5943 15624 1.535462 CCGCAAACCGAATGTTCTTCT 59.465 47.619 0.00 0.00 40.02 2.85
5945 15626 3.424433 CCGCAAACCGAATGTTCTTCTAC 60.424 47.826 0.00 0.00 40.02 2.59
5952 15633 4.283722 ACCGAATGTTCTTCTACTCCAACT 59.716 41.667 0.00 0.00 0.00 3.16
5953 15634 5.479375 ACCGAATGTTCTTCTACTCCAACTA 59.521 40.000 0.00 0.00 0.00 2.24
5967 15648 2.241176 TCCAACTAATAACTGGCCCTGG 59.759 50.000 0.00 0.00 0.00 4.45
5973 15654 0.552848 ATAACTGGCCCTGGTGATGG 59.447 55.000 0.00 0.00 0.00 3.51
5975 15656 2.044650 CTGGCCCTGGTGATGGTG 60.045 66.667 0.00 0.00 0.00 4.17
5990 15671 3.118482 TGATGGTGCTCAGGATTTCTCTC 60.118 47.826 0.00 0.00 0.00 3.20
5994 15675 3.520569 GTGCTCAGGATTTCTCTCTGTC 58.479 50.000 0.00 0.00 0.00 3.51
6028 15709 7.379797 GGCAAGTGTCTAGAAATTTTCTTTGTC 59.620 37.037 16.39 11.26 41.14 3.18
6034 15715 7.012358 GTCTAGAAATTTTCTTTGTCGCAGAG 58.988 38.462 16.39 5.43 41.14 3.35
6061 15742 7.935755 ACCATCATCACTCTATTGGACTAAATG 59.064 37.037 0.00 0.00 0.00 2.32
6086 15767 5.794894 CTGTGGTCTTCCTAACATTGTACT 58.205 41.667 0.00 0.00 34.23 2.73
6087 15768 5.547465 TGTGGTCTTCCTAACATTGTACTG 58.453 41.667 0.00 0.00 34.23 2.74
6088 15769 5.071250 TGTGGTCTTCCTAACATTGTACTGT 59.929 40.000 0.00 0.00 34.23 3.55
6089 15770 6.268158 TGTGGTCTTCCTAACATTGTACTGTA 59.732 38.462 0.00 0.00 34.23 2.74
6091 15772 6.268158 TGGTCTTCCTAACATTGTACTGTACA 59.732 38.462 16.26 16.26 33.93 2.90
6092 15773 7.202020 TGGTCTTCCTAACATTGTACTGTACAA 60.202 37.037 29.30 29.30 42.42 2.41
6100 15781 2.798976 TGTACTGTACAACACCCGTC 57.201 50.000 17.74 0.00 35.38 4.79
6102 15783 2.034939 TGTACTGTACAACACCCGTCAG 59.965 50.000 17.74 0.00 35.38 3.51
6105 15786 0.677288 TGTACAACACCCGTCAGAGG 59.323 55.000 0.00 0.00 0.00 3.69
6106 15787 0.677842 GTACAACACCCGTCAGAGGT 59.322 55.000 0.00 0.00 38.48 3.85
6107 15788 1.069668 GTACAACACCCGTCAGAGGTT 59.930 52.381 0.00 0.00 34.56 3.50
6108 15789 0.179056 ACAACACCCGTCAGAGGTTG 60.179 55.000 0.00 0.00 43.24 3.77
6109 15790 0.105964 CAACACCCGTCAGAGGTTGA 59.894 55.000 0.00 0.00 40.86 3.18
6110 15791 0.834612 AACACCCGTCAGAGGTTGAA 59.165 50.000 0.00 0.00 37.61 2.69
6111 15792 0.393077 ACACCCGTCAGAGGTTGAAG 59.607 55.000 0.00 0.00 37.61 3.02
6112 15793 0.679505 CACCCGTCAGAGGTTGAAGA 59.320 55.000 0.00 0.00 37.46 2.87
6113 15794 1.276421 CACCCGTCAGAGGTTGAAGAT 59.724 52.381 0.00 0.00 37.46 2.40
6114 15795 1.978580 ACCCGTCAGAGGTTGAAGATT 59.021 47.619 0.00 0.00 37.46 2.40
6115 15796 2.289694 ACCCGTCAGAGGTTGAAGATTG 60.290 50.000 0.00 0.00 37.46 2.67
6117 15798 2.416747 CGTCAGAGGTTGAAGATTGCA 58.583 47.619 0.00 0.00 37.46 4.08
6118 15799 2.158449 CGTCAGAGGTTGAAGATTGCAC 59.842 50.000 0.00 0.00 37.46 4.57
6121 15802 3.071457 TCAGAGGTTGAAGATTGCACTGA 59.929 43.478 0.00 0.00 31.34 3.41
6153 15937 5.048782 TGCAATCACACTTGTAATCCTTCAC 60.049 40.000 0.00 0.00 0.00 3.18
6155 15939 4.698201 TCACACTTGTAATCCTTCACCA 57.302 40.909 0.00 0.00 0.00 4.17
6158 15942 4.093408 CACACTTGTAATCCTTCACCATCG 59.907 45.833 0.00 0.00 0.00 3.84
6164 15948 4.341235 TGTAATCCTTCACCATCGGTCTAG 59.659 45.833 0.00 0.00 31.02 2.43
6169 15953 1.481871 TCACCATCGGTCTAGGGTTC 58.518 55.000 0.00 0.00 31.02 3.62
6170 15954 0.102481 CACCATCGGTCTAGGGTTCG 59.898 60.000 0.00 0.00 31.02 3.95
6179 15963 3.490419 CGGTCTAGGGTTCGATAAACTGG 60.490 52.174 0.00 0.00 38.02 4.00
6180 15964 3.181468 GGTCTAGGGTTCGATAAACTGGG 60.181 52.174 0.00 0.00 38.02 4.45
6189 16012 6.914826 GGTTCGATAAACTGGGTCATCCCTA 61.915 48.000 4.88 0.00 43.18 3.53
6205 16028 7.176690 GGTCATCCCTAGAACAAATTGAAAGAA 59.823 37.037 0.00 0.00 0.00 2.52
6208 16031 7.745620 TCCCTAGAACAAATTGAAAGAAGTC 57.254 36.000 0.00 0.00 0.00 3.01
6214 16037 7.710896 AGAACAAATTGAAAGAAGTCAAGAGG 58.289 34.615 0.00 0.00 40.72 3.69
6216 16039 5.360714 ACAAATTGAAAGAAGTCAAGAGGCA 59.639 36.000 0.00 0.00 40.72 4.75
6217 16040 6.127366 ACAAATTGAAAGAAGTCAAGAGGCAA 60.127 34.615 0.00 0.00 40.72 4.52
6220 16043 3.214328 GAAAGAAGTCAAGAGGCAACCA 58.786 45.455 0.00 0.00 37.17 3.67
6221 16044 3.297134 AAGAAGTCAAGAGGCAACCAA 57.703 42.857 0.00 0.00 37.17 3.67
6222 16045 2.576615 AGAAGTCAAGAGGCAACCAAC 58.423 47.619 0.00 0.00 37.17 3.77
6226 16049 2.706190 AGTCAAGAGGCAACCAACTACT 59.294 45.455 0.00 0.00 37.17 2.57
6228 16051 3.883489 GTCAAGAGGCAACCAACTACTTT 59.117 43.478 0.00 0.00 37.17 2.66
6229 16052 4.023963 GTCAAGAGGCAACCAACTACTTTC 60.024 45.833 0.00 0.00 37.17 2.62
6230 16053 3.141767 AGAGGCAACCAACTACTTTCC 57.858 47.619 0.00 0.00 37.17 3.13
6231 16054 2.711547 AGAGGCAACCAACTACTTTCCT 59.288 45.455 0.00 0.00 37.17 3.36
6232 16055 3.138468 AGAGGCAACCAACTACTTTCCTT 59.862 43.478 0.00 0.00 37.17 3.36
6233 16056 3.222603 AGGCAACCAACTACTTTCCTTG 58.777 45.455 0.00 0.00 37.17 3.61
6235 16058 3.826729 GGCAACCAACTACTTTCCTTGAT 59.173 43.478 0.00 0.00 0.00 2.57
6237 16060 5.123979 GGCAACCAACTACTTTCCTTGATAG 59.876 44.000 0.00 0.00 0.00 2.08
6238 16061 5.938125 GCAACCAACTACTTTCCTTGATAGA 59.062 40.000 0.00 0.00 0.00 1.98
6239 16062 6.128254 GCAACCAACTACTTTCCTTGATAGAC 60.128 42.308 0.00 0.00 0.00 2.59
6241 16064 6.465084 ACCAACTACTTTCCTTGATAGACAC 58.535 40.000 0.00 0.00 0.00 3.67
6251 16082 4.836175 TCCTTGATAGACACACCAACTGTA 59.164 41.667 0.00 0.00 0.00 2.74
6253 16084 5.995282 CCTTGATAGACACACCAACTGTAAA 59.005 40.000 0.00 0.00 0.00 2.01
6257 16088 4.755266 AGACACACCAACTGTAAAGACT 57.245 40.909 0.00 0.00 0.00 3.24
6278 16109 9.806448 AAGACTTGAAGAGAGCTATAGATATGA 57.194 33.333 3.21 0.00 0.00 2.15
6300 16135 1.372501 ACATCTACAACTGGCCCCTT 58.627 50.000 0.00 0.00 0.00 3.95
6308 16143 2.123982 CTGGCCCCTTCATCAGCC 60.124 66.667 0.00 0.00 45.96 4.85
6312 16147 2.048603 GCCCCTTCATCAGCCACAC 61.049 63.158 0.00 0.00 0.00 3.82
6314 16149 1.746615 CCCTTCATCAGCCACACGG 60.747 63.158 0.00 0.00 0.00 4.94
6315 16150 1.296392 CCTTCATCAGCCACACGGA 59.704 57.895 0.00 0.00 0.00 4.69
6319 16154 2.309528 TCATCAGCCACACGGAATAC 57.690 50.000 0.00 0.00 0.00 1.89
6350 16186 7.480760 AAGCTTAAATTCTTCCATTGCCTAA 57.519 32.000 0.00 0.00 0.00 2.69
6356 16192 2.930950 TCTTCCATTGCCTAAATCCCG 58.069 47.619 0.00 0.00 0.00 5.14
6390 16226 6.924111 TGCATGAGAAAAGGGTAAAAATCTC 58.076 36.000 0.00 0.00 35.13 2.75
6391 16227 6.721208 TGCATGAGAAAAGGGTAAAAATCTCT 59.279 34.615 0.00 0.00 35.49 3.10
6409 16245 1.134521 TCTCAAAGTCACACTTGCCGT 60.135 47.619 0.00 0.00 38.66 5.68
6415 16251 1.138266 AGTCACACTTGCCGTACAGTT 59.862 47.619 0.00 0.00 0.00 3.16
6425 16261 0.673644 CCGTACAGTTTGGGCCTCTG 60.674 60.000 17.44 17.44 35.60 3.35
6430 16266 1.108727 CAGTTTGGGCCTCTGTTGCA 61.109 55.000 4.53 0.00 0.00 4.08
6431 16267 0.396974 AGTTTGGGCCTCTGTTGCAA 60.397 50.000 4.53 0.00 0.00 4.08
6434 16270 0.396974 TTGGGCCTCTGTTGCAAGTT 60.397 50.000 4.53 0.00 0.00 2.66
6463 16342 2.160813 GGTTGTATACCCACAAACGCAG 59.839 50.000 0.00 0.00 41.43 5.18
6519 16828 9.975218 AAATATCTCCCTAGAAAGCAAAAACTA 57.025 29.630 0.00 0.00 34.73 2.24
6525 16834 7.882179 TCCCTAGAAAGCAAAAACTACAAATC 58.118 34.615 0.00 0.00 0.00 2.17
6527 16836 7.595130 CCCTAGAAAGCAAAAACTACAAATCAC 59.405 37.037 0.00 0.00 0.00 3.06
6530 16839 8.232913 AGAAAGCAAAAACTACAAATCACCTA 57.767 30.769 0.00 0.00 0.00 3.08
6540 16849 6.231211 ACTACAAATCACCTACTTCCACAAG 58.769 40.000 0.00 0.00 35.50 3.16
6546 16945 4.157246 TCACCTACTTCCACAAGCTAAGA 58.843 43.478 0.19 0.00 32.09 2.10
6551 16950 5.652891 CCTACTTCCACAAGCTAAGACTAGA 59.347 44.000 0.00 0.00 32.09 2.43
6557 16956 5.300539 TCCACAAGCTAAGACTAGATAGCAG 59.699 44.000 20.73 16.50 45.48 4.24
6558 16957 5.300539 CCACAAGCTAAGACTAGATAGCAGA 59.699 44.000 20.73 0.00 45.48 4.26
6627 17347 7.148340 GCTAGATGTACAACAAGCAGAGAAATT 60.148 37.037 17.13 0.00 31.63 1.82
6628 17348 7.516198 AGATGTACAACAAGCAGAGAAATTT 57.484 32.000 0.00 0.00 0.00 1.82
6635 17355 6.980397 ACAACAAGCAGAGAAATTTAAAGTGG 59.020 34.615 0.00 0.00 0.00 4.00
6640 17360 7.544804 AGCAGAGAAATTTAAAGTGGGATTT 57.455 32.000 0.00 0.00 0.00 2.17
6648 17368 7.482169 AATTTAAAGTGGGATTTCCTCCTTC 57.518 36.000 0.00 0.00 44.28 3.46
6677 17397 1.945387 AATGCATCTAGTGGTGCTCG 58.055 50.000 0.00 0.00 41.78 5.03
6682 17402 2.005960 ATCTAGTGGTGCTCGACGGC 62.006 60.000 0.00 0.00 0.00 5.68
6814 17542 6.875076 ACCTTGTCATACCAACATACTACTC 58.125 40.000 0.00 0.00 0.00 2.59
6815 17543 6.127140 ACCTTGTCATACCAACATACTACTCC 60.127 42.308 0.00 0.00 0.00 3.85
6816 17544 5.864418 TGTCATACCAACATACTACTCCC 57.136 43.478 0.00 0.00 0.00 4.30
6817 17545 5.525484 TGTCATACCAACATACTACTCCCT 58.475 41.667 0.00 0.00 0.00 4.20
6818 17546 5.597182 TGTCATACCAACATACTACTCCCTC 59.403 44.000 0.00 0.00 0.00 4.30
6819 17547 5.010820 GTCATACCAACATACTACTCCCTCC 59.989 48.000 0.00 0.00 0.00 4.30
6820 17548 2.385803 ACCAACATACTACTCCCTCCG 58.614 52.381 0.00 0.00 0.00 4.63
6821 17549 2.292061 ACCAACATACTACTCCCTCCGT 60.292 50.000 0.00 0.00 0.00 4.69
6822 17550 2.361438 CCAACATACTACTCCCTCCGTC 59.639 54.545 0.00 0.00 0.00 4.79
6823 17551 2.361438 CAACATACTACTCCCTCCGTCC 59.639 54.545 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.611613 TGACAGGTGACTTGAGAGATTAAT 57.388 37.500 0.38 0.00 40.21 1.40
1 2 6.611613 ATGACAGGTGACTTGAGAGATTAA 57.388 37.500 0.38 0.00 40.21 1.40
2 3 5.163612 CGATGACAGGTGACTTGAGAGATTA 60.164 44.000 0.38 0.00 40.21 1.75
3 4 4.381398 CGATGACAGGTGACTTGAGAGATT 60.381 45.833 0.38 0.00 40.21 2.40
4 5 3.130164 CGATGACAGGTGACTTGAGAGAT 59.870 47.826 0.38 0.00 40.21 2.75
5 6 2.489722 CGATGACAGGTGACTTGAGAGA 59.510 50.000 0.38 0.00 40.21 3.10
6 7 2.416566 CCGATGACAGGTGACTTGAGAG 60.417 54.545 0.38 0.00 40.21 3.20
7 8 1.546029 CCGATGACAGGTGACTTGAGA 59.454 52.381 0.38 0.00 40.21 3.27
8 9 1.273606 ACCGATGACAGGTGACTTGAG 59.726 52.381 0.38 0.00 41.10 3.02
9 10 1.338107 ACCGATGACAGGTGACTTGA 58.662 50.000 0.38 0.00 41.10 3.02
10 11 3.914984 ACCGATGACAGGTGACTTG 57.085 52.632 0.00 0.00 41.10 3.16
19 20 1.175983 GGGTTTTGGCACCGATGACA 61.176 55.000 0.00 0.00 44.45 3.58
20 21 1.175983 TGGGTTTTGGCACCGATGAC 61.176 55.000 0.00 0.00 37.76 3.06
21 22 0.468214 TTGGGTTTTGGCACCGATGA 60.468 50.000 0.00 0.00 37.76 2.92
22 23 0.607620 ATTGGGTTTTGGCACCGATG 59.392 50.000 0.00 0.00 37.76 3.84
23 24 1.347062 AATTGGGTTTTGGCACCGAT 58.653 45.000 0.00 0.00 37.76 4.18
24 25 1.996798 TAATTGGGTTTTGGCACCGA 58.003 45.000 0.00 0.00 37.76 4.69
25 26 2.611722 CCTTAATTGGGTTTTGGCACCG 60.612 50.000 0.00 0.00 37.76 4.94
26 27 2.290008 CCCTTAATTGGGTTTTGGCACC 60.290 50.000 0.00 0.00 42.25 5.01
27 28 3.052455 CCCTTAATTGGGTTTTGGCAC 57.948 47.619 0.00 0.00 42.25 5.01
28 29 4.526279 AAGCCCTTAATTGGGTTTTGGCA 61.526 43.478 2.96 0.00 46.43 4.92
29 30 2.039746 AAGCCCTTAATTGGGTTTTGGC 59.960 45.455 2.96 0.00 46.43 4.52
30 31 4.775253 TCTAAGCCCTTAATTGGGTTTTGG 59.225 41.667 8.04 3.73 46.43 3.28
31 32 5.993748 TCTAAGCCCTTAATTGGGTTTTG 57.006 39.130 8.04 6.84 46.43 2.44
32 33 6.022958 ACATCTAAGCCCTTAATTGGGTTTT 58.977 36.000 8.04 3.93 46.43 2.43
37 38 7.410120 AAAAGACATCTAAGCCCTTAATTGG 57.590 36.000 0.00 0.00 0.00 3.16
38 39 7.698130 CGAAAAAGACATCTAAGCCCTTAATTG 59.302 37.037 0.00 0.00 0.00 2.32
39 40 7.148069 CCGAAAAAGACATCTAAGCCCTTAATT 60.148 37.037 0.00 0.00 0.00 1.40
40 41 6.318900 CCGAAAAAGACATCTAAGCCCTTAAT 59.681 38.462 0.00 0.00 0.00 1.40
41 42 5.646360 CCGAAAAAGACATCTAAGCCCTTAA 59.354 40.000 0.00 0.00 0.00 1.85
42 43 5.183228 CCGAAAAAGACATCTAAGCCCTTA 58.817 41.667 0.00 0.00 0.00 2.69
43 44 4.010349 CCGAAAAAGACATCTAAGCCCTT 58.990 43.478 0.00 0.00 0.00 3.95
44 45 3.009143 ACCGAAAAAGACATCTAAGCCCT 59.991 43.478 0.00 0.00 0.00 5.19
45 46 3.127030 CACCGAAAAAGACATCTAAGCCC 59.873 47.826 0.00 0.00 0.00 5.19
46 47 3.127030 CCACCGAAAAAGACATCTAAGCC 59.873 47.826 0.00 0.00 0.00 4.35
47 48 3.751698 ACCACCGAAAAAGACATCTAAGC 59.248 43.478 0.00 0.00 0.00 3.09
48 49 4.378459 GCACCACCGAAAAAGACATCTAAG 60.378 45.833 0.00 0.00 0.00 2.18
49 50 3.500680 GCACCACCGAAAAAGACATCTAA 59.499 43.478 0.00 0.00 0.00 2.10
50 51 3.071479 GCACCACCGAAAAAGACATCTA 58.929 45.455 0.00 0.00 0.00 1.98
51 52 1.880027 GCACCACCGAAAAAGACATCT 59.120 47.619 0.00 0.00 0.00 2.90
52 53 1.880027 AGCACCACCGAAAAAGACATC 59.120 47.619 0.00 0.00 0.00 3.06
53 54 1.880027 GAGCACCACCGAAAAAGACAT 59.120 47.619 0.00 0.00 0.00 3.06
54 55 1.305201 GAGCACCACCGAAAAAGACA 58.695 50.000 0.00 0.00 0.00 3.41
55 56 1.002792 GTGAGCACCACCGAAAAAGAC 60.003 52.381 0.00 0.00 39.86 3.01
56 57 1.305201 GTGAGCACCACCGAAAAAGA 58.695 50.000 0.00 0.00 39.86 2.52
57 58 0.041312 CGTGAGCACCACCGAAAAAG 60.041 55.000 4.06 0.00 42.76 2.27
58 59 0.462225 TCGTGAGCACCACCGAAAAA 60.462 50.000 4.06 0.00 42.76 1.94
59 60 1.144276 TCGTGAGCACCACCGAAAA 59.856 52.632 4.06 0.00 42.76 2.29
60 61 1.593209 GTCGTGAGCACCACCGAAA 60.593 57.895 4.06 0.00 42.76 3.46
61 62 2.028484 GTCGTGAGCACCACCGAA 59.972 61.111 4.06 0.00 42.76 4.30
62 63 2.910479 AGTCGTGAGCACCACCGA 60.910 61.111 4.06 2.85 42.76 4.69
63 64 2.734723 CAGTCGTGAGCACCACCG 60.735 66.667 4.06 0.87 42.76 4.94
64 65 2.357517 CCAGTCGTGAGCACCACC 60.358 66.667 4.06 0.00 42.76 4.61
65 66 2.357517 CCCAGTCGTGAGCACCAC 60.358 66.667 0.00 0.00 42.30 4.16
66 67 4.314440 GCCCAGTCGTGAGCACCA 62.314 66.667 0.00 0.00 0.00 4.17
67 68 3.537206 AAGCCCAGTCGTGAGCACC 62.537 63.158 0.00 0.00 0.00 5.01
68 69 1.598130 AAAGCCCAGTCGTGAGCAC 60.598 57.895 0.00 0.00 0.00 4.40
69 70 1.597854 CAAAGCCCAGTCGTGAGCA 60.598 57.895 0.00 0.00 0.00 4.26
70 71 0.884704 TTCAAAGCCCAGTCGTGAGC 60.885 55.000 0.00 0.00 0.00 4.26
71 72 1.151668 CTTCAAAGCCCAGTCGTGAG 58.848 55.000 0.00 0.00 0.00 3.51
72 73 0.756294 TCTTCAAAGCCCAGTCGTGA 59.244 50.000 0.00 0.00 0.00 4.35
73 74 1.466167 CATCTTCAAAGCCCAGTCGTG 59.534 52.381 0.00 0.00 0.00 4.35
74 75 1.813513 CATCTTCAAAGCCCAGTCGT 58.186 50.000 0.00 0.00 0.00 4.34
75 76 0.449388 GCATCTTCAAAGCCCAGTCG 59.551 55.000 0.00 0.00 0.00 4.18
76 77 0.813821 GGCATCTTCAAAGCCCAGTC 59.186 55.000 0.00 0.00 42.58 3.51
77 78 2.967270 GGCATCTTCAAAGCCCAGT 58.033 52.632 0.00 0.00 42.58 4.00
82 83 3.505836 GCTTGTAAGGCATCTTCAAAGC 58.494 45.455 8.76 8.76 40.77 3.51
83 84 3.189287 ACGCTTGTAAGGCATCTTCAAAG 59.811 43.478 0.00 0.00 34.59 2.77
84 85 3.146066 ACGCTTGTAAGGCATCTTCAAA 58.854 40.909 0.00 0.00 34.59 2.69
85 86 2.778299 ACGCTTGTAAGGCATCTTCAA 58.222 42.857 0.00 0.00 34.59 2.69
86 87 2.472695 ACGCTTGTAAGGCATCTTCA 57.527 45.000 0.00 0.00 34.59 3.02
87 88 4.939509 TTTACGCTTGTAAGGCATCTTC 57.060 40.909 0.00 0.00 39.15 2.87
88 89 4.156008 CCTTTTACGCTTGTAAGGCATCTT 59.844 41.667 0.00 0.00 39.15 2.40
89 90 3.689649 CCTTTTACGCTTGTAAGGCATCT 59.310 43.478 0.00 0.00 39.15 2.90
90 91 3.687698 TCCTTTTACGCTTGTAAGGCATC 59.312 43.478 0.00 0.00 39.15 3.91
91 92 3.681593 TCCTTTTACGCTTGTAAGGCAT 58.318 40.909 0.00 0.00 39.15 4.40
92 93 3.128852 TCCTTTTACGCTTGTAAGGCA 57.871 42.857 0.00 0.00 39.15 4.75
93 94 3.687698 TCATCCTTTTACGCTTGTAAGGC 59.312 43.478 0.00 0.00 39.15 4.35
94 95 5.873179 TTCATCCTTTTACGCTTGTAAGG 57.127 39.130 0.00 0.00 39.15 2.69
95 96 5.739161 GCATTCATCCTTTTACGCTTGTAAG 59.261 40.000 0.00 0.00 39.15 2.34
96 97 5.182190 TGCATTCATCCTTTTACGCTTGTAA 59.818 36.000 0.00 0.00 36.30 2.41
97 98 4.697828 TGCATTCATCCTTTTACGCTTGTA 59.302 37.500 0.00 0.00 0.00 2.41
98 99 3.505680 TGCATTCATCCTTTTACGCTTGT 59.494 39.130 0.00 0.00 0.00 3.16
99 100 3.853671 GTGCATTCATCCTTTTACGCTTG 59.146 43.478 0.00 0.00 0.00 4.01
100 101 3.758554 AGTGCATTCATCCTTTTACGCTT 59.241 39.130 0.00 0.00 0.00 4.68
101 102 3.347216 AGTGCATTCATCCTTTTACGCT 58.653 40.909 0.00 0.00 0.00 5.07
102 103 3.126858 TGAGTGCATTCATCCTTTTACGC 59.873 43.478 7.97 0.00 0.00 4.42
103 104 4.944962 TGAGTGCATTCATCCTTTTACG 57.055 40.909 7.97 0.00 0.00 3.18
104 105 6.855836 TCAATGAGTGCATTCATCCTTTTAC 58.144 36.000 23.16 0.00 42.66 2.01
105 106 7.485810 CATCAATGAGTGCATTCATCCTTTTA 58.514 34.615 23.16 7.60 42.66 1.52
106 107 5.988310 TCAATGAGTGCATTCATCCTTTT 57.012 34.783 23.16 7.13 42.66 2.27
107 108 5.681437 GCATCAATGAGTGCATTCATCCTTT 60.681 40.000 23.16 7.49 42.66 3.11
108 109 4.202121 GCATCAATGAGTGCATTCATCCTT 60.202 41.667 23.16 7.84 42.66 3.36
109 110 3.318275 GCATCAATGAGTGCATTCATCCT 59.682 43.478 23.16 7.78 42.66 3.24
110 111 3.639538 GCATCAATGAGTGCATTCATCC 58.360 45.455 23.16 7.77 42.66 3.51
111 112 3.242969 ACGCATCAATGAGTGCATTCATC 60.243 43.478 23.16 10.69 42.66 2.92
112 113 2.686405 ACGCATCAATGAGTGCATTCAT 59.314 40.909 18.17 18.17 42.66 2.57
113 114 2.086094 ACGCATCAATGAGTGCATTCA 58.914 42.857 14.80 14.80 42.66 2.57
114 115 2.838386 ACGCATCAATGAGTGCATTC 57.162 45.000 14.53 1.56 42.66 2.67
121 122 1.662629 GGACACTCACGCATCAATGAG 59.337 52.381 0.00 0.00 46.49 2.90
122 123 1.001860 TGGACACTCACGCATCAATGA 59.998 47.619 0.00 0.00 0.00 2.57
123 124 1.129251 GTGGACACTCACGCATCAATG 59.871 52.381 0.00 0.00 0.00 2.82
124 125 1.442769 GTGGACACTCACGCATCAAT 58.557 50.000 0.00 0.00 0.00 2.57
125 126 2.912986 GTGGACACTCACGCATCAA 58.087 52.632 0.00 0.00 0.00 2.57
126 127 4.673403 GTGGACACTCACGCATCA 57.327 55.556 0.00 0.00 0.00 3.07
132 133 1.590147 CCCCTACGTGGACACTCAC 59.410 63.158 0.00 0.00 38.35 3.51
133 134 2.280552 GCCCCTACGTGGACACTCA 61.281 63.158 0.00 0.00 38.35 3.41
134 135 2.577593 GCCCCTACGTGGACACTC 59.422 66.667 0.00 0.00 38.35 3.51
135 136 3.379445 CGCCCCTACGTGGACACT 61.379 66.667 0.00 0.00 38.35 3.55
136 137 3.688159 ACGCCCCTACGTGGACAC 61.688 66.667 0.00 0.00 46.28 3.67
161 162 2.159448 CCAACGCAAACAACACTCTCAA 60.159 45.455 0.00 0.00 0.00 3.02
166 167 0.681564 TCCCCAACGCAAACAACACT 60.682 50.000 0.00 0.00 0.00 3.55
170 171 0.821711 CCTCTCCCCAACGCAAACAA 60.822 55.000 0.00 0.00 0.00 2.83
204 205 0.605319 GGCAACCATCGACTTCCACA 60.605 55.000 0.00 0.00 0.00 4.17
207 208 1.026718 CCTGGCAACCATCGACTTCC 61.027 60.000 0.00 0.00 30.82 3.46
231 232 1.203505 TCAAATCCTACCCCCACCAGA 60.204 52.381 0.00 0.00 0.00 3.86
242 243 9.426837 CAAATTCATGAGCTTTTTCAAATCCTA 57.573 29.630 0.00 0.00 0.00 2.94
243 244 8.152246 TCAAATTCATGAGCTTTTTCAAATCCT 58.848 29.630 0.00 0.00 0.00 3.24
244 245 8.314143 TCAAATTCATGAGCTTTTTCAAATCC 57.686 30.769 0.00 0.00 0.00 3.01
285 289 9.762933 CTTTTTCCCAAATTCATGAACTTCTTA 57.237 29.630 11.07 0.00 0.00 2.10
288 292 8.437360 AACTTTTTCCCAAATTCATGAACTTC 57.563 30.769 11.07 0.00 0.00 3.01
303 308 7.428282 TTTTCAAACTTGTGAACTTTTTCCC 57.572 32.000 0.00 0.00 37.24 3.97
389 412 8.700051 TCAAATACCTGAACTTTTCCAAATTCA 58.300 29.630 0.00 0.00 0.00 2.57
401 424 6.365520 ACTTGTTTCCTCAAATACCTGAACT 58.634 36.000 0.00 0.00 0.00 3.01
486 529 9.869757 TTCTTGAACTTCTATCATATTCGTGAA 57.130 29.630 0.00 0.00 0.00 3.18
501 544 7.707104 TGAACTTTTCCAGATTCTTGAACTTC 58.293 34.615 0.00 3.43 0.00 3.01
636 694 4.265073 CACCTGCTATGCCTAGTTCTTTT 58.735 43.478 0.00 0.00 0.00 2.27
639 697 1.139853 GCACCTGCTATGCCTAGTTCT 59.860 52.381 0.00 0.00 37.08 3.01
640 698 1.587547 GCACCTGCTATGCCTAGTTC 58.412 55.000 0.00 0.00 37.08 3.01
670 2013 2.094597 CCAGCGAAAATGCAATTCTGGA 60.095 45.455 13.11 0.00 43.54 3.86
672 2015 2.919229 GTCCAGCGAAAATGCAATTCTG 59.081 45.455 12.19 4.82 33.67 3.02
715 2058 1.244019 GGCCTTCCAGTCGCACAAAT 61.244 55.000 0.00 0.00 0.00 2.32
717 2060 2.281484 GGCCTTCCAGTCGCACAA 60.281 61.111 0.00 0.00 0.00 3.33
794 2137 3.009115 AGGGACGTGGTGGGATGG 61.009 66.667 0.00 0.00 0.00 3.51
795 2138 2.584608 GAGGGACGTGGTGGGATG 59.415 66.667 0.00 0.00 0.00 3.51
904 2248 4.373116 GGCTTCACGCACGGGAGA 62.373 66.667 0.00 0.00 41.67 3.71
1146 2510 4.806640 ATTCCAATCCATTTCACCACAC 57.193 40.909 0.00 0.00 0.00 3.82
1250 2615 4.228567 GCCGCCTACAGCCTCCTC 62.229 72.222 0.00 0.00 38.78 3.71
1374 3355 5.356882 TTCAGCGGAACTACAAAGAAATG 57.643 39.130 0.00 0.00 0.00 2.32
1399 3385 4.323417 ACATAGCCAGAAACGACATCAAA 58.677 39.130 0.00 0.00 0.00 2.69
1407 3393 1.806542 AGCACAACATAGCCAGAAACG 59.193 47.619 0.00 0.00 0.00 3.60
1438 3428 7.627340 ACAAACTCTACATTTACACAACGAAG 58.373 34.615 0.00 0.00 0.00 3.79
1492 3482 6.133356 ACTAACCCAATGACTCTTTTCCAAA 58.867 36.000 0.00 0.00 0.00 3.28
1629 3685 9.372369 GATATGCAGTCCTATACCTAAAACATC 57.628 37.037 0.00 0.00 0.00 3.06
1718 4073 9.753674 TCAATTATTATGTTTCTGAAAGGGTCT 57.246 29.630 2.48 0.00 0.00 3.85
1791 4146 9.331282 AGTAAAATGCTAAGTATCTAAAGCTGG 57.669 33.333 0.00 0.00 35.95 4.85
1918 4273 3.363970 CGTCGACAGATTTCAAACAAGGG 60.364 47.826 17.16 0.00 0.00 3.95
1930 4285 2.263077 GTTGAGATTGCGTCGACAGAT 58.737 47.619 17.16 5.69 0.00 2.90
1955 4310 1.927174 CTCAATCTTAACCGGCGTCAG 59.073 52.381 6.01 0.00 0.00 3.51
1960 4315 1.475213 CCTCCCTCAATCTTAACCGGC 60.475 57.143 0.00 0.00 0.00 6.13
2003 4358 8.530311 TGTACGGTATGTTAAAATCCTAAGACA 58.470 33.333 0.00 0.00 0.00 3.41
2099 4492 4.351111 AGGAGAGGAAAAATACCACACACT 59.649 41.667 0.00 0.00 0.00 3.55
2183 4576 5.875224 TCCAATAACAATGACTCAAGACCA 58.125 37.500 0.00 0.00 0.00 4.02
2246 4640 0.041684 AGGCATTAGCAAAAGGGCCT 59.958 50.000 0.00 0.00 46.33 5.19
2295 4689 4.866508 TTTAGAAAGCGGAGAAGACAGA 57.133 40.909 0.00 0.00 0.00 3.41
2296 4690 7.778470 ATATTTTAGAAAGCGGAGAAGACAG 57.222 36.000 0.00 0.00 0.00 3.51
2391 4788 7.060421 ACTTGATTGGAAAGAACTTTGACCTA 58.940 34.615 4.48 0.00 32.11 3.08
2400 4797 6.202188 TGAACTCGTACTTGATTGGAAAGAAC 59.798 38.462 0.00 0.00 0.00 3.01
2587 6520 4.307032 AGGAAGGCTCTTTTGAATAGCA 57.693 40.909 0.00 0.00 38.01 3.49
2738 6671 1.453379 CTTGGATCCAGGCAGGCAG 60.453 63.158 15.53 3.59 37.29 4.85
2739 6672 2.679092 CTTGGATCCAGGCAGGCA 59.321 61.111 15.53 0.00 37.29 4.75
2740 6673 2.004408 ATCCTTGGATCCAGGCAGGC 62.004 60.000 21.85 0.00 37.29 4.85
2741 6674 0.178998 CATCCTTGGATCCAGGCAGG 60.179 60.000 20.95 20.95 39.47 4.85
3204 7251 1.760029 TGGGATCGATGTCGGAAATGA 59.240 47.619 0.54 0.00 40.29 2.57
3443 8060 2.973983 TTCATTGGGGAACGGGTTAA 57.026 45.000 0.00 0.00 0.00 2.01
3489 8107 6.371595 TCAAAGCAAAATCCATGGGTAAAT 57.628 33.333 13.02 0.00 0.00 1.40
3505 8123 8.023128 GTCATCTAATAAAGCAGTTTCAAAGCA 58.977 33.333 0.00 0.00 0.00 3.91
3518 8136 6.583562 ACTTTCTCCCCGTCATCTAATAAAG 58.416 40.000 0.00 0.00 0.00 1.85
3588 8213 2.679092 CCCTGCTGGATCTGGCAA 59.321 61.111 11.88 0.83 38.02 4.52
3714 8352 3.695606 GCACTCGGTCCTCCAGCA 61.696 66.667 0.00 0.00 0.00 4.41
4046 8950 0.178831 AGATCCAGGGTCCCCAAGTT 60.179 55.000 3.51 0.00 38.92 2.66
4148 13009 0.965439 CCGCACCCAAATTCTTTCCA 59.035 50.000 0.00 0.00 0.00 3.53
4237 13099 3.066064 CGACACCAAACTTCAATTCCACA 59.934 43.478 0.00 0.00 0.00 4.17
4413 13276 1.047002 CCATGGTTGGCAGGAAAACA 58.953 50.000 2.57 0.00 35.85 2.83
4508 13371 1.577468 GTTTTCGCAAAAACTGGGGG 58.423 50.000 5.74 0.00 47.00 5.40
4518 13381 0.658897 GAACTGACCGGTTTTCGCAA 59.341 50.000 9.42 0.00 37.59 4.85
4528 13391 1.145803 GAACCGGAAAGAACTGACCG 58.854 55.000 9.46 0.00 44.16 4.79
4582 13445 2.281070 AGGAACTGGCAGCACGTG 60.281 61.111 15.89 12.28 37.18 4.49
4763 13830 4.951094 ACGGAGGGAGTATAAGAGATATGC 59.049 45.833 0.00 0.00 0.00 3.14
4808 13875 8.540492 CCGTATGTAGTCACTTGTTGAAATATC 58.460 37.037 0.00 0.00 35.39 1.63
4809 13876 8.255206 TCCGTATGTAGTCACTTGTTGAAATAT 58.745 33.333 0.00 0.00 35.39 1.28
4810 13877 7.604549 TCCGTATGTAGTCACTTGTTGAAATA 58.395 34.615 0.00 0.00 35.39 1.40
4811 13878 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
4812 13879 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4814 13881 5.221283 TGTTCCGTATGTAGTCACTTGTTGA 60.221 40.000 0.00 0.00 0.00 3.18
4815 13882 4.986034 TGTTCCGTATGTAGTCACTTGTTG 59.014 41.667 0.00 0.00 0.00 3.33
4818 13885 6.533819 TTTTGTTCCGTATGTAGTCACTTG 57.466 37.500 0.00 0.00 0.00 3.16
4819 13886 6.932400 TCATTTTGTTCCGTATGTAGTCACTT 59.068 34.615 0.00 0.00 0.00 3.16
4820 13887 6.460781 TCATTTTGTTCCGTATGTAGTCACT 58.539 36.000 0.00 0.00 0.00 3.41
4821 13888 6.367969 ACTCATTTTGTTCCGTATGTAGTCAC 59.632 38.462 0.00 0.00 0.00 3.67
4824 13891 6.460781 TCACTCATTTTGTTCCGTATGTAGT 58.539 36.000 0.00 0.00 0.00 2.73
4825 13892 6.961359 TCACTCATTTTGTTCCGTATGTAG 57.039 37.500 0.00 0.00 0.00 2.74
4827 13894 6.655003 AGATTCACTCATTTTGTTCCGTATGT 59.345 34.615 0.00 0.00 0.00 2.29
4828 13895 7.076842 AGATTCACTCATTTTGTTCCGTATG 57.923 36.000 0.00 0.00 0.00 2.39
4832 13899 6.147821 AGTGTAGATTCACTCATTTTGTTCCG 59.852 38.462 0.00 0.00 44.07 4.30
4833 13900 7.440523 AGTGTAGATTCACTCATTTTGTTCC 57.559 36.000 0.00 0.00 44.07 3.62
4866 13933 7.066645 GCTACCATATACGGATGTATGTAGACA 59.933 40.741 13.96 0.00 41.37 3.41
4872 13939 5.592104 TGGCTACCATATACGGATGTATG 57.408 43.478 0.00 0.00 41.37 2.39
4878 13945 5.554437 TTCAAATGGCTACCATATACGGA 57.446 39.130 0.00 0.00 44.40 4.69
4881 13948 8.396272 AGACATTTCAAATGGCTACCATATAC 57.604 34.615 17.52 0.00 44.40 1.47
4883 13950 8.439971 TCTAGACATTTCAAATGGCTACCATAT 58.560 33.333 20.19 0.00 44.40 1.78
4886 13953 6.061022 TCTAGACATTTCAAATGGCTACCA 57.939 37.500 20.19 8.41 38.54 3.25
4887 13954 7.336931 TCTTTCTAGACATTTCAAATGGCTACC 59.663 37.037 20.19 1.96 38.54 3.18
4904 13971 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
4905 13972 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
4906 13973 9.374838 GTCCGTTCCTAAATAATTGTCTTTCTA 57.625 33.333 0.00 0.00 0.00 2.10
4907 13974 7.064253 CGTCCGTTCCTAAATAATTGTCTTTCT 59.936 37.037 0.00 0.00 0.00 2.52
4908 13975 7.178074 CGTCCGTTCCTAAATAATTGTCTTTC 58.822 38.462 0.00 0.00 0.00 2.62
4909 13976 6.093082 CCGTCCGTTCCTAAATAATTGTCTTT 59.907 38.462 0.00 0.00 0.00 2.52
4910 13977 5.583457 CCGTCCGTTCCTAAATAATTGTCTT 59.417 40.000 0.00 0.00 0.00 3.01
4911 13978 5.105228 TCCGTCCGTTCCTAAATAATTGTCT 60.105 40.000 0.00 0.00 0.00 3.41
4917 13984 4.949856 ACTACTCCGTCCGTTCCTAAATAA 59.050 41.667 0.00 0.00 0.00 1.40
4923 13990 2.725221 ATACTACTCCGTCCGTTCCT 57.275 50.000 0.00 0.00 0.00 3.36
4924 13991 3.733337 TCTATACTACTCCGTCCGTTCC 58.267 50.000 0.00 0.00 0.00 3.62
4926 13993 4.414337 ACTCTATACTACTCCGTCCGTT 57.586 45.455 0.00 0.00 0.00 4.44
4932 13999 9.486497 TGTCAGTTATTACTCTATACTACTCCG 57.514 37.037 0.00 0.00 30.26 4.63
4994 14063 2.134789 ACCCAATGAAGTGATCCTGC 57.865 50.000 0.00 0.00 0.00 4.85
5062 14131 3.206150 GTGATTCCGGCAGTGACATTAT 58.794 45.455 0.00 0.00 0.00 1.28
5152 14221 6.313658 CACTGGAATGTTCGATAAATCTGTGA 59.686 38.462 0.00 0.00 0.00 3.58
5155 14224 5.065090 TGCACTGGAATGTTCGATAAATCTG 59.935 40.000 0.00 0.00 0.00 2.90
5156 14225 5.065218 GTGCACTGGAATGTTCGATAAATCT 59.935 40.000 10.32 0.00 0.00 2.40
5157 14226 5.065218 AGTGCACTGGAATGTTCGATAAATC 59.935 40.000 20.97 0.00 0.00 2.17
5158 14227 4.943705 AGTGCACTGGAATGTTCGATAAAT 59.056 37.500 20.97 0.00 0.00 1.40
5159 14228 4.323417 AGTGCACTGGAATGTTCGATAAA 58.677 39.130 20.97 0.00 0.00 1.40
5162 14231 2.479566 AGTGCACTGGAATGTTCGAT 57.520 45.000 20.97 0.00 0.00 3.59
5163 14232 3.064207 GTTAGTGCACTGGAATGTTCGA 58.936 45.455 29.57 1.60 0.00 3.71
5164 14233 2.805671 TGTTAGTGCACTGGAATGTTCG 59.194 45.455 29.57 0.00 0.00 3.95
5168 14466 3.758023 TGGAATGTTAGTGCACTGGAATG 59.242 43.478 29.57 0.00 0.00 2.67
5210 14508 8.827177 TGACTGTAGTAATTAGGTGAAACAAG 57.173 34.615 0.00 0.00 39.98 3.16
5223 14521 9.555727 AAACAAGTACATGTTGACTGTAGTAAT 57.444 29.630 16.54 0.00 42.49 1.89
5286 14584 4.939052 ACCTTAGTCCATCGGTGATAAG 57.061 45.455 0.00 2.88 0.00 1.73
5287 14585 6.040166 GTCTAACCTTAGTCCATCGGTGATAA 59.960 42.308 0.00 0.00 32.61 1.75
5288 14586 5.533903 GTCTAACCTTAGTCCATCGGTGATA 59.466 44.000 0.00 0.00 32.61 2.15
5289 14587 4.341520 GTCTAACCTTAGTCCATCGGTGAT 59.658 45.833 0.00 0.00 32.61 3.06
5290 14588 3.698040 GTCTAACCTTAGTCCATCGGTGA 59.302 47.826 0.00 0.00 32.61 4.02
5338 14636 6.146510 CACAAGCGATACTTTGTAGGTGTAAA 59.853 38.462 0.00 0.00 36.04 2.01
5346 14645 3.046968 TGGCACAAGCGATACTTTGTA 57.953 42.857 0.00 0.00 43.41 2.41
5436 14737 4.937620 TCTCCAAGTCCAAATCAGATTTCG 59.062 41.667 5.32 0.00 0.00 3.46
5466 14767 5.958955 ACTTCTATCAAATTTTGCAGCCTC 58.041 37.500 4.19 0.00 0.00 4.70
5498 14832 7.801547 ACTTCAAATGCATTCAGAAATTACG 57.198 32.000 20.85 14.27 0.00 3.18
5576 14915 6.097915 TCCTAGGAAACATCATAATCGACC 57.902 41.667 9.71 0.00 0.00 4.79
5681 15127 9.985730 TTCAAACAATAATTTCATCAGCTCTTT 57.014 25.926 0.00 0.00 0.00 2.52
5850 15530 6.403636 CCAATAACAGCACATACTTCTCCAAC 60.404 42.308 0.00 0.00 0.00 3.77
5859 15539 1.333619 CGGCCCAATAACAGCACATAC 59.666 52.381 0.00 0.00 0.00 2.39
5903 15584 5.163602 TGCGGGATCCAAATTACAACATAAC 60.164 40.000 15.23 0.00 0.00 1.89
5906 15587 3.360867 TGCGGGATCCAAATTACAACAT 58.639 40.909 15.23 0.00 0.00 2.71
5922 15603 0.596082 AAGAACATTCGGTTTGCGGG 59.404 50.000 0.00 0.00 40.63 6.13
5929 15610 4.283722 AGTTGGAGTAGAAGAACATTCGGT 59.716 41.667 0.00 0.00 0.00 4.69
5943 15624 4.163458 CAGGGCCAGTTATTAGTTGGAGTA 59.837 45.833 6.18 0.00 33.76 2.59
5945 15626 3.545703 CAGGGCCAGTTATTAGTTGGAG 58.454 50.000 6.18 0.00 33.76 3.86
5952 15633 2.174639 CCATCACCAGGGCCAGTTATTA 59.825 50.000 6.18 0.00 0.00 0.98
5953 15634 1.063717 CCATCACCAGGGCCAGTTATT 60.064 52.381 6.18 0.00 0.00 1.40
5967 15648 2.941720 GAGAAATCCTGAGCACCATCAC 59.058 50.000 0.00 0.00 0.00 3.06
5973 15654 3.056250 TGACAGAGAGAAATCCTGAGCAC 60.056 47.826 0.00 0.00 0.00 4.40
5975 15656 3.430651 CCTGACAGAGAGAAATCCTGAGC 60.431 52.174 3.32 0.00 0.00 4.26
5990 15671 0.670162 CACTTGCCCAAACCTGACAG 59.330 55.000 0.00 0.00 0.00 3.51
5994 15675 2.154462 CTAGACACTTGCCCAAACCTG 58.846 52.381 0.00 0.00 0.00 4.00
6028 15709 1.408340 AGAGTGATGATGGTCTCTGCG 59.592 52.381 0.00 0.00 36.17 5.18
6034 15715 5.543507 AGTCCAATAGAGTGATGATGGTC 57.456 43.478 0.00 0.00 0.00 4.02
6061 15742 2.749621 CAATGTTAGGAAGACCACAGCC 59.250 50.000 0.00 0.00 38.94 4.85
6086 15767 0.677288 CCTCTGACGGGTGTTGTACA 59.323 55.000 0.00 0.00 0.00 2.90
6087 15768 0.677842 ACCTCTGACGGGTGTTGTAC 59.322 55.000 0.00 0.00 35.51 2.90
6088 15769 1.069513 CAACCTCTGACGGGTGTTGTA 59.930 52.381 8.04 0.00 36.99 2.41
6089 15770 0.179056 CAACCTCTGACGGGTGTTGT 60.179 55.000 8.04 0.00 36.99 3.32
6091 15772 0.834612 TTCAACCTCTGACGGGTGTT 59.165 50.000 9.87 0.00 42.51 3.32
6092 15773 0.393077 CTTCAACCTCTGACGGGTGT 59.607 55.000 9.87 0.00 42.51 4.16
6093 15774 0.679505 TCTTCAACCTCTGACGGGTG 59.320 55.000 5.22 5.22 43.30 4.61
6094 15775 1.645710 ATCTTCAACCTCTGACGGGT 58.354 50.000 0.00 0.00 38.94 5.28
6096 15777 1.734465 GCAATCTTCAACCTCTGACGG 59.266 52.381 0.00 0.00 32.21 4.79
6097 15778 2.158449 GTGCAATCTTCAACCTCTGACG 59.842 50.000 0.00 0.00 32.21 4.35
6100 15781 3.405831 TCAGTGCAATCTTCAACCTCTG 58.594 45.455 0.00 0.00 0.00 3.35
6102 15783 3.364366 CGTTCAGTGCAATCTTCAACCTC 60.364 47.826 0.00 0.00 0.00 3.85
6105 15786 3.609103 ACGTTCAGTGCAATCTTCAAC 57.391 42.857 0.00 0.00 0.00 3.18
6106 15787 4.123506 TGTACGTTCAGTGCAATCTTCAA 58.876 39.130 0.00 0.00 42.43 2.69
6107 15788 3.723260 TGTACGTTCAGTGCAATCTTCA 58.277 40.909 0.00 0.00 42.43 3.02
6115 15796 2.159430 TGATTGCATGTACGTTCAGTGC 59.841 45.455 16.67 16.67 36.39 4.40
6117 15798 3.186409 GTGTGATTGCATGTACGTTCAGT 59.814 43.478 0.00 0.00 0.00 3.41
6118 15799 3.433274 AGTGTGATTGCATGTACGTTCAG 59.567 43.478 0.00 0.00 0.00 3.02
6121 15802 3.563808 ACAAGTGTGATTGCATGTACGTT 59.436 39.130 0.00 0.00 33.28 3.99
6153 15937 1.329256 ATCGAACCCTAGACCGATGG 58.671 55.000 0.00 0.00 39.84 3.51
6155 15939 4.037684 CAGTTTATCGAACCCTAGACCGAT 59.962 45.833 0.00 0.00 43.17 4.18
6158 15942 3.181468 CCCAGTTTATCGAACCCTAGACC 60.181 52.174 0.00 0.00 39.13 3.85
6164 15948 2.773993 TGACCCAGTTTATCGAACCC 57.226 50.000 0.00 0.00 39.13 4.11
6179 15963 6.659242 TCTTTCAATTTGTTCTAGGGATGACC 59.341 38.462 0.00 0.00 40.67 4.02
6180 15964 7.687941 TCTTTCAATTTGTTCTAGGGATGAC 57.312 36.000 0.00 0.00 0.00 3.06
6189 16012 7.682981 GCCTCTTGACTTCTTTCAATTTGTTCT 60.683 37.037 0.00 0.00 34.96 3.01
6192 16015 5.360714 TGCCTCTTGACTTCTTTCAATTTGT 59.639 36.000 0.00 0.00 34.96 2.83
6198 16021 3.214328 GGTTGCCTCTTGACTTCTTTCA 58.786 45.455 0.00 0.00 0.00 2.69
6205 16028 2.706190 AGTAGTTGGTTGCCTCTTGACT 59.294 45.455 0.00 0.00 0.00 3.41
6208 16031 3.253432 GGAAAGTAGTTGGTTGCCTCTTG 59.747 47.826 0.00 0.00 0.00 3.02
6214 16037 5.938125 TCTATCAAGGAAAGTAGTTGGTTGC 59.062 40.000 0.00 0.00 0.00 4.17
6216 16039 6.935208 GTGTCTATCAAGGAAAGTAGTTGGTT 59.065 38.462 0.00 0.00 0.00 3.67
6217 16040 6.042781 TGTGTCTATCAAGGAAAGTAGTTGGT 59.957 38.462 0.00 0.00 0.00 3.67
6220 16043 6.042781 TGGTGTGTCTATCAAGGAAAGTAGTT 59.957 38.462 0.00 0.00 0.00 2.24
6221 16044 5.542635 TGGTGTGTCTATCAAGGAAAGTAGT 59.457 40.000 0.00 0.00 0.00 2.73
6222 16045 6.037786 TGGTGTGTCTATCAAGGAAAGTAG 57.962 41.667 0.00 0.00 0.00 2.57
6226 16049 5.063204 CAGTTGGTGTGTCTATCAAGGAAA 58.937 41.667 0.00 0.00 0.00 3.13
6228 16051 3.646162 ACAGTTGGTGTGTCTATCAAGGA 59.354 43.478 0.00 0.00 38.28 3.36
6229 16052 4.008074 ACAGTTGGTGTGTCTATCAAGG 57.992 45.455 0.00 0.00 38.28 3.61
6230 16053 6.929049 TCTTTACAGTTGGTGTGTCTATCAAG 59.071 38.462 0.00 0.00 40.69 3.02
6231 16054 6.704493 GTCTTTACAGTTGGTGTGTCTATCAA 59.296 38.462 0.00 0.00 40.69 2.57
6232 16055 6.041637 AGTCTTTACAGTTGGTGTGTCTATCA 59.958 38.462 0.00 0.00 40.69 2.15
6233 16056 6.456501 AGTCTTTACAGTTGGTGTGTCTATC 58.543 40.000 0.00 0.00 40.69 2.08
6235 16058 5.864418 AGTCTTTACAGTTGGTGTGTCTA 57.136 39.130 0.00 0.00 40.69 2.59
6237 16060 4.873827 TCAAGTCTTTACAGTTGGTGTGTC 59.126 41.667 0.00 0.00 40.69 3.67
6238 16061 4.839121 TCAAGTCTTTACAGTTGGTGTGT 58.161 39.130 0.00 0.00 40.69 3.72
6239 16062 5.584649 TCTTCAAGTCTTTACAGTTGGTGTG 59.415 40.000 0.00 0.00 40.69 3.82
6241 16064 6.049149 TCTCTTCAAGTCTTTACAGTTGGTG 58.951 40.000 0.00 0.00 0.00 4.17
6253 16084 9.979897 ATCATATCTATAGCTCTCTTCAAGTCT 57.020 33.333 0.00 0.00 0.00 3.24
6278 16109 3.123273 AGGGGCCAGTTGTAGATGTTAT 58.877 45.455 4.39 0.00 0.00 1.89
6285 16116 1.281867 TGATGAAGGGGCCAGTTGTAG 59.718 52.381 4.39 0.00 0.00 2.74
6287 16118 0.038744 CTGATGAAGGGGCCAGTTGT 59.961 55.000 4.39 0.00 0.00 3.32
6291 16122 2.123982 GGCTGATGAAGGGGCCAG 60.124 66.667 4.39 0.00 43.59 4.85
6293 16124 2.440980 GTGGCTGATGAAGGGGCC 60.441 66.667 0.00 0.00 44.31 5.80
6294 16125 2.048603 GTGTGGCTGATGAAGGGGC 61.049 63.158 0.00 0.00 0.00 5.80
6295 16126 1.746615 CGTGTGGCTGATGAAGGGG 60.747 63.158 0.00 0.00 0.00 4.79
6300 16135 1.831106 AGTATTCCGTGTGGCTGATGA 59.169 47.619 0.00 0.00 34.14 2.92
6350 16186 3.260380 TCATGCATTTTGAAACCGGGATT 59.740 39.130 6.32 0.00 0.00 3.01
6356 16192 5.179929 CCCTTTTCTCATGCATTTTGAAACC 59.820 40.000 14.35 0.00 0.00 3.27
6390 16226 1.299541 ACGGCAAGTGTGACTTTGAG 58.700 50.000 4.93 1.54 36.03 3.02
6391 16227 2.206750 GTACGGCAAGTGTGACTTTGA 58.793 47.619 4.93 0.00 36.03 2.69
6409 16245 1.817740 GCAACAGAGGCCCAAACTGTA 60.818 52.381 18.17 0.00 42.81 2.74
6415 16251 0.396974 AACTTGCAACAGAGGCCCAA 60.397 50.000 0.00 0.00 0.00 4.12
6492 16376 9.975218 AGTTTTTGCTTTCTAGGGAGATATTTA 57.025 29.630 0.00 0.00 0.00 1.40
6495 16379 8.548877 TGTAGTTTTTGCTTTCTAGGGAGATAT 58.451 33.333 0.00 0.00 0.00 1.63
6497 16381 6.779860 TGTAGTTTTTGCTTTCTAGGGAGAT 58.220 36.000 0.00 0.00 0.00 2.75
6498 16382 6.182507 TGTAGTTTTTGCTTTCTAGGGAGA 57.817 37.500 0.00 0.00 0.00 3.71
6499 16383 6.877611 TTGTAGTTTTTGCTTTCTAGGGAG 57.122 37.500 0.00 0.00 0.00 4.30
6501 16385 7.595130 GTGATTTGTAGTTTTTGCTTTCTAGGG 59.405 37.037 0.00 0.00 0.00 3.53
6502 16386 7.595130 GGTGATTTGTAGTTTTTGCTTTCTAGG 59.405 37.037 0.00 0.00 0.00 3.02
6503 16387 8.352942 AGGTGATTTGTAGTTTTTGCTTTCTAG 58.647 33.333 0.00 0.00 0.00 2.43
6506 16390 8.135529 AGTAGGTGATTTGTAGTTTTTGCTTTC 58.864 33.333 0.00 0.00 0.00 2.62
6508 16392 7.582667 AGTAGGTGATTTGTAGTTTTTGCTT 57.417 32.000 0.00 0.00 0.00 3.91
6511 16395 7.860872 GTGGAAGTAGGTGATTTGTAGTTTTTG 59.139 37.037 0.00 0.00 0.00 2.44
6519 16828 3.821033 GCTTGTGGAAGTAGGTGATTTGT 59.179 43.478 0.00 0.00 0.00 2.83
6525 16834 4.021016 AGTCTTAGCTTGTGGAAGTAGGTG 60.021 45.833 0.00 0.00 0.00 4.00
6527 16836 4.810191 AGTCTTAGCTTGTGGAAGTAGG 57.190 45.455 0.00 0.00 0.00 3.18
6530 16839 6.183360 GCTATCTAGTCTTAGCTTGTGGAAGT 60.183 42.308 0.00 0.00 38.22 3.01
6586 17306 2.814269 TCTAGCAAGCTTCGCATACAG 58.186 47.619 18.74 11.67 0.00 2.74
6592 17312 2.540515 TGTACATCTAGCAAGCTTCGC 58.459 47.619 11.48 11.48 0.00 4.70
6601 17321 4.748892 TCTCTGCTTGTTGTACATCTAGC 58.251 43.478 24.52 24.52 34.23 3.42
6610 17330 6.980397 CCACTTTAAATTTCTCTGCTTGTTGT 59.020 34.615 0.00 0.00 0.00 3.32
6611 17331 6.421801 CCCACTTTAAATTTCTCTGCTTGTTG 59.578 38.462 0.00 0.00 0.00 3.33
6612 17332 6.323739 TCCCACTTTAAATTTCTCTGCTTGTT 59.676 34.615 0.00 0.00 0.00 2.83
6640 17360 3.674997 CATTTCGTTTGAGGAAGGAGGA 58.325 45.455 0.00 0.00 34.01 3.71
6648 17368 4.201851 CCACTAGATGCATTTCGTTTGAGG 60.202 45.833 0.00 0.00 0.00 3.86
6795 17523 5.010820 GGAGGGAGTAGTATGTTGGTATGAC 59.989 48.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.