Multiple sequence alignment - TraesCS4A01G266100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G266100 chr4A 100.000 3005 0 0 1 3005 578232584 578235588 0.000000e+00 5550.0
1 TraesCS4A01G266100 chr4A 89.961 1036 93 8 983 2008 578176207 578175173 0.000000e+00 1327.0
2 TraesCS4A01G266100 chr4A 88.207 1026 111 7 983 1998 578006996 578008021 0.000000e+00 1216.0
3 TraesCS4A01G266100 chr4D 92.981 2479 137 15 545 3005 25194951 25192492 0.000000e+00 3579.0
4 TraesCS4A01G266100 chr4D 89.952 1035 94 7 983 2008 25364013 25362980 0.000000e+00 1327.0
5 TraesCS4A01G266100 chr4D 85.152 1017 130 10 983 1989 25321271 25320266 0.000000e+00 1022.0
6 TraesCS4A01G266100 chr4B 92.089 1618 116 7 615 2222 37174849 37173234 0.000000e+00 2268.0
7 TraesCS4A01G266100 chr4B 90.145 1035 92 8 983 2008 37297448 37296415 0.000000e+00 1338.0
8 TraesCS4A01G266100 chr4B 91.656 803 50 10 2216 3005 37150617 37149819 0.000000e+00 1096.0
9 TraesCS4A01G266100 chr4B 86.301 365 44 5 5 365 89355033 89355395 2.810000e-105 392.0
10 TraesCS4A01G266100 chr3B 89.179 1035 102 8 983 2008 39545166 39546199 0.000000e+00 1282.0
11 TraesCS4A01G266100 chrUn 86.376 367 44 6 3 365 87970709 87970345 2.170000e-106 396.0
12 TraesCS4A01G266100 chrUn 84.932 365 49 6 1 361 208769512 208769874 6.120000e-97 364.0
13 TraesCS4A01G266100 chr2A 85.519 366 47 5 5 365 68226287 68226651 7.860000e-101 377.0
14 TraesCS4A01G266100 chr1A 86.269 335 41 5 31 361 592073965 592073632 2.850000e-95 359.0
15 TraesCS4A01G266100 chr1A 79.834 362 67 6 1 359 64411966 64411608 2.970000e-65 259.0
16 TraesCS4A01G266100 chr5A 84.573 363 53 3 2 361 551437490 551437852 1.020000e-94 357.0
17 TraesCS4A01G266100 chr5B 85.294 306 41 4 59 361 586474215 586473911 2.250000e-81 313.0
18 TraesCS4A01G266100 chr5D 80.495 364 64 7 1 361 412240852 412241211 3.820000e-69 272.0
19 TraesCS4A01G266100 chr6D 74.713 174 34 10 1774 1945 433408989 433409154 5.380000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G266100 chr4A 578232584 578235588 3004 False 5550 5550 100.000 1 3005 1 chr4A.!!$F2 3004
1 TraesCS4A01G266100 chr4A 578175173 578176207 1034 True 1327 1327 89.961 983 2008 1 chr4A.!!$R1 1025
2 TraesCS4A01G266100 chr4A 578006996 578008021 1025 False 1216 1216 88.207 983 1998 1 chr4A.!!$F1 1015
3 TraesCS4A01G266100 chr4D 25192492 25194951 2459 True 3579 3579 92.981 545 3005 1 chr4D.!!$R1 2460
4 TraesCS4A01G266100 chr4D 25362980 25364013 1033 True 1327 1327 89.952 983 2008 1 chr4D.!!$R3 1025
5 TraesCS4A01G266100 chr4D 25320266 25321271 1005 True 1022 1022 85.152 983 1989 1 chr4D.!!$R2 1006
6 TraesCS4A01G266100 chr4B 37173234 37174849 1615 True 2268 2268 92.089 615 2222 1 chr4B.!!$R2 1607
7 TraesCS4A01G266100 chr4B 37296415 37297448 1033 True 1338 1338 90.145 983 2008 1 chr4B.!!$R3 1025
8 TraesCS4A01G266100 chr4B 37149819 37150617 798 True 1096 1096 91.656 2216 3005 1 chr4B.!!$R1 789
9 TraesCS4A01G266100 chr3B 39545166 39546199 1033 False 1282 1282 89.179 983 2008 1 chr3B.!!$F1 1025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.034896 GAGTCCACCCGAAGCAGAAA 59.965 55.0 0.0 0.0 0.0 2.52 F
332 333 0.034896 GTCCACCCGAAGCAGAAAGA 59.965 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 1754 1.203288 CCCCATGAGGAGCTCTAGGAT 60.203 57.143 14.64 0.0 38.24 3.24 R
2263 2304 1.365699 CAGAAAATTGCCCATGCTGC 58.634 50.000 0.00 0.0 38.71 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.268720 TGGGCCACCAAGAAACAC 57.731 55.556 0.00 0.00 45.87 3.32
19 20 1.307986 TGGGCCACCAAGAAACACA 59.692 52.632 0.00 0.00 45.87 3.72
20 21 0.324738 TGGGCCACCAAGAAACACAA 60.325 50.000 0.00 0.00 45.87 3.33
21 22 0.104120 GGGCCACCAAGAAACACAAC 59.896 55.000 4.39 0.00 36.50 3.32
22 23 0.104120 GGCCACCAAGAAACACAACC 59.896 55.000 0.00 0.00 0.00 3.77
23 24 0.820871 GCCACCAAGAAACACAACCA 59.179 50.000 0.00 0.00 0.00 3.67
24 25 1.412343 GCCACCAAGAAACACAACCAT 59.588 47.619 0.00 0.00 0.00 3.55
25 26 2.802774 GCCACCAAGAAACACAACCATG 60.803 50.000 0.00 0.00 0.00 3.66
26 27 2.430332 CCACCAAGAAACACAACCATGT 59.570 45.455 0.00 0.00 41.61 3.21
27 28 3.490761 CCACCAAGAAACACAACCATGTC 60.491 47.826 0.00 0.00 37.82 3.06
28 29 3.130164 CACCAAGAAACACAACCATGTCA 59.870 43.478 0.00 0.00 37.82 3.58
29 30 3.960102 ACCAAGAAACACAACCATGTCAT 59.040 39.130 0.00 0.00 37.82 3.06
30 31 5.009510 CACCAAGAAACACAACCATGTCATA 59.990 40.000 0.00 0.00 37.82 2.15
31 32 5.596361 ACCAAGAAACACAACCATGTCATAA 59.404 36.000 0.00 0.00 37.82 1.90
32 33 6.097554 ACCAAGAAACACAACCATGTCATAAA 59.902 34.615 0.00 0.00 37.82 1.40
33 34 6.642131 CCAAGAAACACAACCATGTCATAAAG 59.358 38.462 0.00 0.00 37.82 1.85
34 35 7.424803 CAAGAAACACAACCATGTCATAAAGA 58.575 34.615 0.00 0.00 37.82 2.52
35 36 7.206981 AGAAACACAACCATGTCATAAAGAG 57.793 36.000 0.00 0.00 37.82 2.85
36 37 6.998074 AGAAACACAACCATGTCATAAAGAGA 59.002 34.615 0.00 0.00 37.82 3.10
37 38 6.560253 AACACAACCATGTCATAAAGAGAC 57.440 37.500 0.00 0.00 37.82 3.36
47 48 6.516739 TGTCATAAAGAGACACCAGAGTAG 57.483 41.667 0.00 0.00 40.80 2.57
48 49 6.246163 TGTCATAAAGAGACACCAGAGTAGA 58.754 40.000 0.00 0.00 40.80 2.59
49 50 6.375736 TGTCATAAAGAGACACCAGAGTAGAG 59.624 42.308 0.00 0.00 40.80 2.43
50 51 5.888724 TCATAAAGAGACACCAGAGTAGAGG 59.111 44.000 0.00 0.00 0.00 3.69
51 52 2.137810 AGAGACACCAGAGTAGAGGC 57.862 55.000 0.00 0.00 0.00 4.70
52 53 1.356059 AGAGACACCAGAGTAGAGGCA 59.644 52.381 0.00 0.00 0.00 4.75
53 54 2.024464 AGAGACACCAGAGTAGAGGCAT 60.024 50.000 0.00 0.00 0.00 4.40
54 55 3.203263 AGAGACACCAGAGTAGAGGCATA 59.797 47.826 0.00 0.00 0.00 3.14
55 56 3.292460 AGACACCAGAGTAGAGGCATAC 58.708 50.000 0.00 0.00 0.00 2.39
56 57 2.362717 GACACCAGAGTAGAGGCATACC 59.637 54.545 0.00 0.00 0.00 2.73
57 58 2.292257 ACACCAGAGTAGAGGCATACCA 60.292 50.000 0.00 0.00 39.06 3.25
58 59 2.766263 CACCAGAGTAGAGGCATACCAA 59.234 50.000 0.00 0.00 39.06 3.67
59 60 3.034635 ACCAGAGTAGAGGCATACCAAG 58.965 50.000 0.00 0.00 39.06 3.61
60 61 3.300388 CCAGAGTAGAGGCATACCAAGA 58.700 50.000 0.00 0.00 39.06 3.02
61 62 3.706594 CCAGAGTAGAGGCATACCAAGAA 59.293 47.826 0.00 0.00 39.06 2.52
62 63 4.202202 CCAGAGTAGAGGCATACCAAGAAG 60.202 50.000 0.00 0.00 39.06 2.85
63 64 3.386402 AGAGTAGAGGCATACCAAGAAGC 59.614 47.826 0.00 0.00 39.06 3.86
64 65 3.107601 AGTAGAGGCATACCAAGAAGCA 58.892 45.455 0.00 0.00 39.06 3.91
65 66 3.713764 AGTAGAGGCATACCAAGAAGCAT 59.286 43.478 0.00 0.00 39.06 3.79
66 67 3.205784 AGAGGCATACCAAGAAGCATC 57.794 47.619 0.00 0.00 39.06 3.91
67 68 2.507058 AGAGGCATACCAAGAAGCATCA 59.493 45.455 0.00 0.00 39.95 3.07
68 69 3.054139 AGAGGCATACCAAGAAGCATCAA 60.054 43.478 0.00 0.00 39.95 2.57
69 70 3.887716 GAGGCATACCAAGAAGCATCAAT 59.112 43.478 0.00 0.00 37.69 2.57
70 71 3.635373 AGGCATACCAAGAAGCATCAATG 59.365 43.478 0.00 0.00 39.06 2.82
71 72 3.243636 GGCATACCAAGAAGCATCAATGG 60.244 47.826 11.01 11.01 39.46 3.16
72 73 3.797865 GCATACCAAGAAGCATCAATGGC 60.798 47.826 12.15 0.00 37.98 4.40
73 74 0.813184 ACCAAGAAGCATCAATGGCG 59.187 50.000 12.15 0.00 37.98 5.69
74 75 0.526954 CCAAGAAGCATCAATGGCGC 60.527 55.000 0.00 0.00 36.08 6.53
75 76 0.864377 CAAGAAGCATCAATGGCGCG 60.864 55.000 0.00 0.00 36.08 6.86
76 77 1.026182 AAGAAGCATCAATGGCGCGA 61.026 50.000 12.10 0.00 36.08 5.87
77 78 1.026182 AGAAGCATCAATGGCGCGAA 61.026 50.000 12.10 0.00 36.08 4.70
78 79 0.863119 GAAGCATCAATGGCGCGAAC 60.863 55.000 12.10 1.21 36.08 3.95
79 80 2.582202 AAGCATCAATGGCGCGAACG 62.582 55.000 12.10 0.00 44.07 3.95
80 81 3.088914 CATCAATGGCGCGAACGA 58.911 55.556 12.10 0.00 43.93 3.85
81 82 1.423450 CATCAATGGCGCGAACGAA 59.577 52.632 12.10 0.00 43.93 3.85
82 83 0.587242 CATCAATGGCGCGAACGAAG 60.587 55.000 12.10 0.00 43.93 3.79
83 84 1.705337 ATCAATGGCGCGAACGAAGG 61.705 55.000 12.10 0.00 43.93 3.46
84 85 3.124921 AATGGCGCGAACGAAGGG 61.125 61.111 12.10 0.00 43.93 3.95
95 96 2.354773 CGAAGGGCGTCGGATAGC 60.355 66.667 0.00 0.60 37.37 2.97
106 107 4.637873 GGATAGCCGAGTTCGAGC 57.362 61.111 2.59 5.13 43.02 5.03
107 108 1.370657 GGATAGCCGAGTTCGAGCG 60.371 63.158 2.59 0.00 43.02 5.03
133 134 3.041940 GGTGTGCCGTCGGTGAAG 61.042 66.667 13.94 0.00 0.00 3.02
134 135 3.712881 GTGTGCCGTCGGTGAAGC 61.713 66.667 13.94 0.00 0.00 3.86
135 136 4.980805 TGTGCCGTCGGTGAAGCC 62.981 66.667 13.94 0.00 0.00 4.35
159 160 1.878775 GCAACATGCCACTGAGACC 59.121 57.895 0.00 0.00 37.42 3.85
160 161 1.915614 GCAACATGCCACTGAGACCG 61.916 60.000 0.00 0.00 37.42 4.79
161 162 0.320683 CAACATGCCACTGAGACCGA 60.321 55.000 0.00 0.00 0.00 4.69
162 163 0.396435 AACATGCCACTGAGACCGAA 59.604 50.000 0.00 0.00 0.00 4.30
163 164 0.036952 ACATGCCACTGAGACCGAAG 60.037 55.000 0.00 0.00 0.00 3.79
180 181 2.203153 GGGCGCAATACCCGATGT 60.203 61.111 10.83 0.00 37.67 3.06
181 182 1.070105 GGGCGCAATACCCGATGTA 59.930 57.895 10.83 0.00 37.67 2.29
182 183 1.226030 GGGCGCAATACCCGATGTAC 61.226 60.000 10.83 0.00 37.67 2.90
183 184 0.249741 GGCGCAATACCCGATGTACT 60.250 55.000 10.83 0.00 30.62 2.73
184 185 1.000060 GGCGCAATACCCGATGTACTA 60.000 52.381 10.83 0.00 30.62 1.82
185 186 2.056577 GCGCAATACCCGATGTACTAC 58.943 52.381 0.30 0.00 30.62 2.73
186 187 2.669364 CGCAATACCCGATGTACTACC 58.331 52.381 0.00 0.00 30.62 3.18
187 188 2.034939 CGCAATACCCGATGTACTACCA 59.965 50.000 0.00 0.00 30.62 3.25
188 189 3.387397 GCAATACCCGATGTACTACCAC 58.613 50.000 0.00 0.00 30.62 4.16
189 190 3.801293 GCAATACCCGATGTACTACCACC 60.801 52.174 0.00 0.00 30.62 4.61
190 191 1.679139 TACCCGATGTACTACCACCG 58.321 55.000 0.00 0.00 0.00 4.94
191 192 1.039233 ACCCGATGTACTACCACCGG 61.039 60.000 0.00 0.00 36.98 5.28
192 193 1.737816 CCGATGTACTACCACCGGG 59.262 63.158 6.32 0.00 41.29 5.73
193 194 1.737816 CGATGTACTACCACCGGGG 59.262 63.158 6.32 0.00 44.81 5.73
203 204 4.278513 CACCGGGGTCAAAGGGCA 62.279 66.667 6.32 0.00 0.00 5.36
204 205 3.966543 ACCGGGGTCAAAGGGCAG 61.967 66.667 6.32 0.00 0.00 4.85
206 207 4.659172 CGGGGTCAAAGGGCAGCA 62.659 66.667 0.00 0.00 0.00 4.41
207 208 2.037847 GGGGTCAAAGGGCAGCAT 59.962 61.111 0.00 0.00 0.00 3.79
208 209 2.353610 GGGGTCAAAGGGCAGCATG 61.354 63.158 0.00 0.00 40.87 4.06
230 231 4.181010 CGAGGCCACCCCAGGATG 62.181 72.222 5.01 0.00 35.39 3.51
231 232 4.512914 GAGGCCACCCCAGGATGC 62.513 72.222 5.01 0.00 35.39 3.91
235 236 4.133373 CCACCCCAGGATGCCCAG 62.133 72.222 0.00 0.00 33.88 4.45
236 237 4.133373 CACCCCAGGATGCCCAGG 62.133 72.222 0.00 0.00 38.74 4.45
248 249 4.748144 CCCAGGCAAGCTCCACCC 62.748 72.222 0.00 0.00 0.00 4.61
249 250 3.970410 CCAGGCAAGCTCCACCCA 61.970 66.667 0.00 0.00 0.00 4.51
250 251 2.115910 CAGGCAAGCTCCACCCAA 59.884 61.111 0.00 0.00 0.00 4.12
251 252 1.975407 CAGGCAAGCTCCACCCAAG 60.975 63.158 0.00 0.00 0.00 3.61
252 253 2.116125 GGCAAGCTCCACCCAAGT 59.884 61.111 0.00 0.00 0.00 3.16
253 254 1.973812 GGCAAGCTCCACCCAAGTC 60.974 63.158 0.00 0.00 0.00 3.01
254 255 2.328099 GCAAGCTCCACCCAAGTCG 61.328 63.158 0.00 0.00 0.00 4.18
255 256 2.032681 AAGCTCCACCCAAGTCGC 59.967 61.111 0.00 0.00 0.00 5.19
256 257 3.553095 AAGCTCCACCCAAGTCGCC 62.553 63.158 0.00 0.00 0.00 5.54
257 258 4.329545 GCTCCACCCAAGTCGCCA 62.330 66.667 0.00 0.00 0.00 5.69
258 259 2.429930 CTCCACCCAAGTCGCCAA 59.570 61.111 0.00 0.00 0.00 4.52
259 260 1.672356 CTCCACCCAAGTCGCCAAG 60.672 63.158 0.00 0.00 0.00 3.61
260 261 2.111999 CTCCACCCAAGTCGCCAAGA 62.112 60.000 0.00 0.00 0.00 3.02
271 272 2.653115 GCCAAGACAAAGGCCTGC 59.347 61.111 5.69 0.00 45.18 4.85
272 273 2.935740 GCCAAGACAAAGGCCTGCC 61.936 63.158 5.69 0.00 45.18 4.85
273 274 1.531365 CCAAGACAAAGGCCTGCCA 60.531 57.895 5.69 0.00 38.92 4.92
274 275 1.530013 CCAAGACAAAGGCCTGCCAG 61.530 60.000 5.69 0.00 38.92 4.85
275 276 1.228675 AAGACAAAGGCCTGCCAGG 60.229 57.895 5.69 6.32 38.92 4.45
276 277 2.677875 GACAAAGGCCTGCCAGGG 60.678 66.667 13.78 0.00 38.92 4.45
277 278 3.511610 ACAAAGGCCTGCCAGGGT 61.512 61.111 13.78 0.00 38.92 4.34
278 279 2.677875 CAAAGGCCTGCCAGGGTC 60.678 66.667 13.78 0.00 38.92 4.46
279 280 3.185203 AAAGGCCTGCCAGGGTCA 61.185 61.111 13.78 0.00 38.92 4.02
280 281 2.777960 AAAGGCCTGCCAGGGTCAA 61.778 57.895 13.78 0.00 38.92 3.18
281 282 2.310930 AAAGGCCTGCCAGGGTCAAA 62.311 55.000 13.78 0.00 38.92 2.69
282 283 2.677875 GGCCTGCCAGGGTCAAAG 60.678 66.667 13.78 0.00 35.37 2.77
283 284 3.376918 GCCTGCCAGGGTCAAAGC 61.377 66.667 13.78 0.00 35.37 3.51
284 285 2.677875 CCTGCCAGGGTCAAAGCC 60.678 66.667 1.63 0.00 35.59 4.35
285 286 2.115910 CTGCCAGGGTCAAAGCCA 59.884 61.111 0.00 0.00 38.48 4.75
286 287 1.531365 CTGCCAGGGTCAAAGCCAA 60.531 57.895 0.00 0.00 38.48 4.52
287 288 0.901580 CTGCCAGGGTCAAAGCCAAT 60.902 55.000 0.00 0.00 38.48 3.16
288 289 1.186917 TGCCAGGGTCAAAGCCAATG 61.187 55.000 0.00 0.00 38.48 2.82
289 290 1.187567 GCCAGGGTCAAAGCCAATGT 61.188 55.000 0.00 0.00 38.48 2.71
290 291 0.604578 CCAGGGTCAAAGCCAATGTG 59.395 55.000 0.00 0.00 38.48 3.21
291 292 0.604578 CAGGGTCAAAGCCAATGTGG 59.395 55.000 0.00 0.00 38.48 4.17
292 293 0.482446 AGGGTCAAAGCCAATGTGGA 59.518 50.000 0.00 0.00 40.96 4.02
293 294 0.890683 GGGTCAAAGCCAATGTGGAG 59.109 55.000 0.00 0.00 40.96 3.86
294 295 1.547675 GGGTCAAAGCCAATGTGGAGA 60.548 52.381 0.00 0.00 40.96 3.71
295 296 2.238521 GGTCAAAGCCAATGTGGAGAA 58.761 47.619 0.00 0.00 40.96 2.87
296 297 2.229784 GGTCAAAGCCAATGTGGAGAAG 59.770 50.000 0.00 0.00 40.96 2.85
297 298 3.149196 GTCAAAGCCAATGTGGAGAAGA 58.851 45.455 0.00 0.00 40.96 2.87
298 299 3.569701 GTCAAAGCCAATGTGGAGAAGAA 59.430 43.478 0.00 0.00 40.96 2.52
299 300 3.822735 TCAAAGCCAATGTGGAGAAGAAG 59.177 43.478 0.00 0.00 40.96 2.85
300 301 1.831580 AGCCAATGTGGAGAAGAAGC 58.168 50.000 0.00 0.00 40.96 3.86
301 302 1.074405 AGCCAATGTGGAGAAGAAGCA 59.926 47.619 0.00 0.00 40.96 3.91
302 303 1.471684 GCCAATGTGGAGAAGAAGCAG 59.528 52.381 0.00 0.00 40.96 4.24
303 304 1.471684 CCAATGTGGAGAAGAAGCAGC 59.528 52.381 0.00 0.00 40.96 5.25
304 305 2.156917 CAATGTGGAGAAGAAGCAGCA 58.843 47.619 0.00 0.00 0.00 4.41
305 306 2.555325 CAATGTGGAGAAGAAGCAGCAA 59.445 45.455 0.00 0.00 0.00 3.91
306 307 1.888215 TGTGGAGAAGAAGCAGCAAG 58.112 50.000 0.00 0.00 0.00 4.01
307 308 1.417517 TGTGGAGAAGAAGCAGCAAGA 59.582 47.619 0.00 0.00 0.00 3.02
308 309 1.803555 GTGGAGAAGAAGCAGCAAGAC 59.196 52.381 0.00 0.00 0.00 3.01
309 310 1.417517 TGGAGAAGAAGCAGCAAGACA 59.582 47.619 0.00 0.00 0.00 3.41
310 311 1.803555 GGAGAAGAAGCAGCAAGACAC 59.196 52.381 0.00 0.00 0.00 3.67
311 312 1.458827 GAGAAGAAGCAGCAAGACACG 59.541 52.381 0.00 0.00 0.00 4.49
312 313 1.069204 AGAAGAAGCAGCAAGACACGA 59.931 47.619 0.00 0.00 0.00 4.35
313 314 1.458827 GAAGAAGCAGCAAGACACGAG 59.541 52.381 0.00 0.00 0.00 4.18
314 315 0.390860 AGAAGCAGCAAGACACGAGT 59.609 50.000 0.00 0.00 0.00 4.18
315 316 0.787183 GAAGCAGCAAGACACGAGTC 59.213 55.000 4.68 4.68 45.31 3.36
316 317 0.601311 AAGCAGCAAGACACGAGTCC 60.601 55.000 9.50 0.00 46.15 3.85
317 318 1.300931 GCAGCAAGACACGAGTCCA 60.301 57.895 9.50 0.00 46.15 4.02
318 319 1.560860 GCAGCAAGACACGAGTCCAC 61.561 60.000 9.50 0.00 46.15 4.02
319 320 0.946221 CAGCAAGACACGAGTCCACC 60.946 60.000 9.50 0.00 46.15 4.61
320 321 1.668151 GCAAGACACGAGTCCACCC 60.668 63.158 9.50 0.00 46.15 4.61
321 322 1.372997 CAAGACACGAGTCCACCCG 60.373 63.158 9.50 0.00 46.15 5.28
322 323 1.529948 AAGACACGAGTCCACCCGA 60.530 57.895 9.50 0.00 46.15 5.14
323 324 1.111116 AAGACACGAGTCCACCCGAA 61.111 55.000 9.50 0.00 46.15 4.30
324 325 1.080705 GACACGAGTCCACCCGAAG 60.081 63.158 1.01 0.00 38.89 3.79
325 326 2.432628 CACGAGTCCACCCGAAGC 60.433 66.667 0.00 0.00 0.00 3.86
326 327 2.915659 ACGAGTCCACCCGAAGCA 60.916 61.111 0.00 0.00 0.00 3.91
327 328 2.125912 CGAGTCCACCCGAAGCAG 60.126 66.667 0.00 0.00 0.00 4.24
328 329 2.636412 CGAGTCCACCCGAAGCAGA 61.636 63.158 0.00 0.00 0.00 4.26
329 330 1.671742 GAGTCCACCCGAAGCAGAA 59.328 57.895 0.00 0.00 0.00 3.02
330 331 0.034896 GAGTCCACCCGAAGCAGAAA 59.965 55.000 0.00 0.00 0.00 2.52
331 332 0.035458 AGTCCACCCGAAGCAGAAAG 59.965 55.000 0.00 0.00 0.00 2.62
332 333 0.034896 GTCCACCCGAAGCAGAAAGA 59.965 55.000 0.00 0.00 0.00 2.52
333 334 0.762418 TCCACCCGAAGCAGAAAGAA 59.238 50.000 0.00 0.00 0.00 2.52
334 335 1.351017 TCCACCCGAAGCAGAAAGAAT 59.649 47.619 0.00 0.00 0.00 2.40
335 336 1.740025 CCACCCGAAGCAGAAAGAATC 59.260 52.381 0.00 0.00 0.00 2.52
336 337 1.740025 CACCCGAAGCAGAAAGAATCC 59.260 52.381 0.00 0.00 0.00 3.01
337 338 1.351017 ACCCGAAGCAGAAAGAATCCA 59.649 47.619 0.00 0.00 0.00 3.41
338 339 2.224769 ACCCGAAGCAGAAAGAATCCAA 60.225 45.455 0.00 0.00 0.00 3.53
339 340 2.421424 CCCGAAGCAGAAAGAATCCAAG 59.579 50.000 0.00 0.00 0.00 3.61
340 341 3.338249 CCGAAGCAGAAAGAATCCAAGA 58.662 45.455 0.00 0.00 0.00 3.02
341 342 3.126000 CCGAAGCAGAAAGAATCCAAGAC 59.874 47.826 0.00 0.00 0.00 3.01
342 343 3.181526 CGAAGCAGAAAGAATCCAAGACG 60.182 47.826 0.00 0.00 0.00 4.18
343 344 3.685139 AGCAGAAAGAATCCAAGACGA 57.315 42.857 0.00 0.00 0.00 4.20
344 345 4.213564 AGCAGAAAGAATCCAAGACGAT 57.786 40.909 0.00 0.00 0.00 3.73
345 346 3.937706 AGCAGAAAGAATCCAAGACGATG 59.062 43.478 0.00 0.00 0.00 3.84
346 347 3.486542 GCAGAAAGAATCCAAGACGATGC 60.487 47.826 0.00 0.00 0.00 3.91
347 348 3.064545 CAGAAAGAATCCAAGACGATGCC 59.935 47.826 0.00 0.00 0.00 4.40
348 349 2.044123 AAGAATCCAAGACGATGCCC 57.956 50.000 0.00 0.00 0.00 5.36
349 350 0.181350 AGAATCCAAGACGATGCCCC 59.819 55.000 0.00 0.00 0.00 5.80
350 351 0.107214 GAATCCAAGACGATGCCCCA 60.107 55.000 0.00 0.00 0.00 4.96
351 352 0.331278 AATCCAAGACGATGCCCCAA 59.669 50.000 0.00 0.00 0.00 4.12
352 353 0.107017 ATCCAAGACGATGCCCCAAG 60.107 55.000 0.00 0.00 0.00 3.61
353 354 1.750399 CCAAGACGATGCCCCAAGG 60.750 63.158 0.00 0.00 0.00 3.61
354 355 1.299648 CAAGACGATGCCCCAAGGA 59.700 57.895 0.00 0.00 33.47 3.36
355 356 0.745845 CAAGACGATGCCCCAAGGAG 60.746 60.000 0.00 0.00 33.47 3.69
356 357 1.915078 AAGACGATGCCCCAAGGAGG 61.915 60.000 0.00 0.00 33.47 4.30
357 358 2.285368 ACGATGCCCCAAGGAGGA 60.285 61.111 0.00 0.00 41.22 3.71
358 359 1.910580 GACGATGCCCCAAGGAGGAA 61.911 60.000 0.00 0.00 41.22 3.36
359 360 1.302949 CGATGCCCCAAGGAGGAAA 59.697 57.895 0.00 0.00 41.22 3.13
360 361 1.032114 CGATGCCCCAAGGAGGAAAC 61.032 60.000 0.00 0.00 41.22 2.78
362 363 0.040204 ATGCCCCAAGGAGGAAACTG 59.960 55.000 0.00 0.00 44.43 3.16
363 364 1.304464 GCCCCAAGGAGGAAACTGG 60.304 63.158 0.00 0.00 44.43 4.00
364 365 1.304464 CCCCAAGGAGGAAACTGGC 60.304 63.158 0.00 0.00 44.43 4.85
365 366 1.460255 CCCAAGGAGGAAACTGGCA 59.540 57.895 0.00 0.00 44.43 4.92
366 367 0.895559 CCCAAGGAGGAAACTGGCAC 60.896 60.000 0.00 0.00 44.43 5.01
367 368 0.895559 CCAAGGAGGAAACTGGCACC 60.896 60.000 0.00 0.00 44.43 5.01
368 369 0.895559 CAAGGAGGAAACTGGCACCC 60.896 60.000 0.00 0.00 44.43 4.61
369 370 2.359975 GGAGGAAACTGGCACCCG 60.360 66.667 0.00 0.00 44.43 5.28
370 371 3.056328 GAGGAAACTGGCACCCGC 61.056 66.667 0.00 0.00 44.43 6.13
394 395 2.351726 GTGTCATCACCTTACAATCGGC 59.648 50.000 0.00 0.00 38.51 5.54
395 396 2.027653 TGTCATCACCTTACAATCGGCA 60.028 45.455 0.00 0.00 0.00 5.69
396 397 2.351726 GTCATCACCTTACAATCGGCAC 59.648 50.000 0.00 0.00 0.00 5.01
397 398 2.236146 TCATCACCTTACAATCGGCACT 59.764 45.455 0.00 0.00 0.00 4.40
398 399 2.851263 TCACCTTACAATCGGCACTT 57.149 45.000 0.00 0.00 0.00 3.16
399 400 3.134574 TCACCTTACAATCGGCACTTT 57.865 42.857 0.00 0.00 0.00 2.66
400 401 3.482436 TCACCTTACAATCGGCACTTTT 58.518 40.909 0.00 0.00 0.00 2.27
401 402 3.252215 TCACCTTACAATCGGCACTTTTG 59.748 43.478 0.00 0.00 0.00 2.44
402 403 2.556622 ACCTTACAATCGGCACTTTTGG 59.443 45.455 0.00 0.00 0.00 3.28
403 404 2.556622 CCTTACAATCGGCACTTTTGGT 59.443 45.455 0.00 0.00 0.00 3.67
404 405 3.005367 CCTTACAATCGGCACTTTTGGTT 59.995 43.478 0.00 0.00 0.00 3.67
405 406 4.500716 CCTTACAATCGGCACTTTTGGTTT 60.501 41.667 0.00 0.00 0.00 3.27
406 407 5.278561 CCTTACAATCGGCACTTTTGGTTTA 60.279 40.000 0.00 0.00 0.00 2.01
407 408 3.972403 ACAATCGGCACTTTTGGTTTAC 58.028 40.909 0.00 0.00 0.00 2.01
408 409 3.381908 ACAATCGGCACTTTTGGTTTACA 59.618 39.130 0.00 0.00 0.00 2.41
409 410 4.142138 ACAATCGGCACTTTTGGTTTACAA 60.142 37.500 0.00 0.00 37.28 2.41
410 411 4.657436 ATCGGCACTTTTGGTTTACAAA 57.343 36.364 0.00 0.00 46.82 2.83
424 425 9.582431 TTTGGTTTACAAATATGTTTCGAACAA 57.418 25.926 0.00 0.00 43.40 2.83
425 426 9.582431 TTGGTTTACAAATATGTTTCGAACAAA 57.418 25.926 0.00 0.00 39.61 2.83
426 427 9.582431 TGGTTTACAAATATGTTTCGAACAAAA 57.418 25.926 0.00 0.00 45.86 2.44
432 433 9.959749 ACAAATATGTTTCGAACAAAATACAGT 57.040 25.926 0.00 0.00 45.86 3.55
434 435 9.620660 AAATATGTTTCGAACAAAATACAGTCC 57.379 29.630 0.00 0.00 45.86 3.85
435 436 5.427036 TGTTTCGAACAAAATACAGTCCC 57.573 39.130 0.00 0.00 38.72 4.46
436 437 5.127491 TGTTTCGAACAAAATACAGTCCCT 58.873 37.500 0.00 0.00 38.72 4.20
437 438 5.008217 TGTTTCGAACAAAATACAGTCCCTG 59.992 40.000 0.00 0.00 38.72 4.45
438 439 3.071479 TCGAACAAAATACAGTCCCTGC 58.929 45.455 0.00 0.00 34.37 4.85
439 440 2.159707 CGAACAAAATACAGTCCCTGCG 60.160 50.000 0.00 0.00 34.37 5.18
440 441 2.561478 ACAAAATACAGTCCCTGCGT 57.439 45.000 0.00 0.00 34.37 5.24
441 442 2.858745 ACAAAATACAGTCCCTGCGTT 58.141 42.857 0.00 0.00 34.37 4.84
442 443 3.219281 ACAAAATACAGTCCCTGCGTTT 58.781 40.909 0.00 0.00 34.37 3.60
443 444 4.391155 ACAAAATACAGTCCCTGCGTTTA 58.609 39.130 0.00 0.00 34.37 2.01
444 445 4.822896 ACAAAATACAGTCCCTGCGTTTAA 59.177 37.500 0.00 0.00 34.37 1.52
445 446 5.475564 ACAAAATACAGTCCCTGCGTTTAAT 59.524 36.000 0.00 0.00 34.37 1.40
446 447 6.655848 ACAAAATACAGTCCCTGCGTTTAATA 59.344 34.615 0.00 0.00 34.37 0.98
447 448 7.175293 ACAAAATACAGTCCCTGCGTTTAATAA 59.825 33.333 0.00 0.00 34.37 1.40
448 449 6.920569 AATACAGTCCCTGCGTTTAATAAG 57.079 37.500 0.00 0.00 34.37 1.73
449 450 4.546829 ACAGTCCCTGCGTTTAATAAGA 57.453 40.909 0.00 0.00 34.37 2.10
450 451 5.099042 ACAGTCCCTGCGTTTAATAAGAT 57.901 39.130 0.00 0.00 34.37 2.40
451 452 5.116882 ACAGTCCCTGCGTTTAATAAGATC 58.883 41.667 0.00 0.00 34.37 2.75
452 453 5.104900 ACAGTCCCTGCGTTTAATAAGATCT 60.105 40.000 0.00 0.00 34.37 2.75
453 454 6.097839 ACAGTCCCTGCGTTTAATAAGATCTA 59.902 38.462 0.00 0.00 34.37 1.98
454 455 7.155328 CAGTCCCTGCGTTTAATAAGATCTAT 58.845 38.462 0.00 0.00 0.00 1.98
455 456 8.304596 CAGTCCCTGCGTTTAATAAGATCTATA 58.695 37.037 0.00 0.00 0.00 1.31
456 457 9.036980 AGTCCCTGCGTTTAATAAGATCTATAT 57.963 33.333 0.00 0.00 0.00 0.86
488 489 9.689501 AAAAATATATTTCTCCGGGTTCTGTAA 57.310 29.630 11.08 0.00 0.00 2.41
489 490 9.689501 AAAATATATTTCTCCGGGTTCTGTAAA 57.310 29.630 11.08 0.00 0.00 2.01
490 491 8.672823 AATATATTTCTCCGGGTTCTGTAAAC 57.327 34.615 0.00 0.00 0.00 2.01
491 492 3.842007 TTTCTCCGGGTTCTGTAAACA 57.158 42.857 0.00 0.00 0.00 2.83
492 493 3.842007 TTCTCCGGGTTCTGTAAACAA 57.158 42.857 0.00 0.00 0.00 2.83
493 494 3.842007 TCTCCGGGTTCTGTAAACAAA 57.158 42.857 0.00 0.00 0.00 2.83
494 495 4.153673 TCTCCGGGTTCTGTAAACAAAA 57.846 40.909 0.00 0.00 0.00 2.44
495 496 4.525024 TCTCCGGGTTCTGTAAACAAAAA 58.475 39.130 0.00 0.00 0.00 1.94
514 515 3.874392 AAAAATCTCAAATGCCCCGAG 57.126 42.857 0.00 0.00 0.00 4.63
515 516 2.514458 AAATCTCAAATGCCCCGAGT 57.486 45.000 0.00 0.00 0.00 4.18
516 517 3.644966 AAATCTCAAATGCCCCGAGTA 57.355 42.857 0.00 0.00 0.00 2.59
517 518 2.918712 ATCTCAAATGCCCCGAGTAG 57.081 50.000 0.00 0.00 0.00 2.57
518 519 0.830648 TCTCAAATGCCCCGAGTAGG 59.169 55.000 0.00 0.00 40.63 3.18
519 520 0.830648 CTCAAATGCCCCGAGTAGGA 59.169 55.000 0.00 0.00 45.00 2.94
520 521 0.830648 TCAAATGCCCCGAGTAGGAG 59.169 55.000 0.00 0.00 45.00 3.69
521 522 0.815615 CAAATGCCCCGAGTAGGAGC 60.816 60.000 0.00 0.00 45.00 4.70
522 523 0.983378 AAATGCCCCGAGTAGGAGCT 60.983 55.000 0.00 0.00 45.00 4.09
523 524 1.403687 AATGCCCCGAGTAGGAGCTC 61.404 60.000 4.71 4.71 45.00 4.09
524 525 2.442272 GCCCCGAGTAGGAGCTCA 60.442 66.667 17.19 0.00 45.00 4.26
525 526 1.834822 GCCCCGAGTAGGAGCTCAT 60.835 63.158 17.19 11.85 45.00 2.90
526 527 0.539901 GCCCCGAGTAGGAGCTCATA 60.540 60.000 17.19 10.57 45.00 2.15
527 528 1.893210 GCCCCGAGTAGGAGCTCATAT 60.893 57.143 17.19 3.17 45.00 1.78
528 529 2.530701 CCCCGAGTAGGAGCTCATATT 58.469 52.381 17.19 9.90 45.00 1.28
529 530 3.698289 CCCCGAGTAGGAGCTCATATTA 58.302 50.000 17.19 0.00 45.00 0.98
530 531 4.087182 CCCCGAGTAGGAGCTCATATTAA 58.913 47.826 17.19 0.00 45.00 1.40
531 532 4.712337 CCCCGAGTAGGAGCTCATATTAAT 59.288 45.833 17.19 1.34 45.00 1.40
532 533 5.187967 CCCCGAGTAGGAGCTCATATTAATT 59.812 44.000 17.19 0.00 45.00 1.40
533 534 6.295916 CCCCGAGTAGGAGCTCATATTAATTT 60.296 42.308 17.19 0.00 45.00 1.82
534 535 6.814146 CCCGAGTAGGAGCTCATATTAATTTC 59.186 42.308 17.19 0.00 45.00 2.17
535 536 7.310113 CCCGAGTAGGAGCTCATATTAATTTCT 60.310 40.741 17.19 4.06 45.00 2.52
536 537 8.091449 CCGAGTAGGAGCTCATATTAATTTCTT 58.909 37.037 17.19 0.00 45.00 2.52
537 538 9.482627 CGAGTAGGAGCTCATATTAATTTCTTT 57.517 33.333 17.19 0.00 35.33 2.52
604 606 2.775490 AATTCCCAAAGATAGCCCCC 57.225 50.000 0.00 0.00 0.00 5.40
606 608 1.693799 TTCCCAAAGATAGCCCCCTT 58.306 50.000 0.00 0.00 0.00 3.95
607 609 1.222567 TCCCAAAGATAGCCCCCTTC 58.777 55.000 0.00 0.00 0.00 3.46
610 612 2.423517 CCCAAAGATAGCCCCCTTCTTC 60.424 54.545 0.00 0.00 0.00 2.87
611 613 2.242196 CCAAAGATAGCCCCCTTCTTCA 59.758 50.000 0.00 0.00 0.00 3.02
612 614 3.117360 CCAAAGATAGCCCCCTTCTTCAT 60.117 47.826 0.00 0.00 0.00 2.57
613 615 3.872459 AAGATAGCCCCCTTCTTCATG 57.128 47.619 0.00 0.00 0.00 3.07
644 646 6.118170 TCTGAAATCATCATTCTCCAGGTTC 58.882 40.000 0.00 0.00 37.44 3.62
645 647 5.818887 TGAAATCATCATTCTCCAGGTTCA 58.181 37.500 0.00 0.00 31.50 3.18
649 651 5.032327 TCATCATTCTCCAGGTTCATGAG 57.968 43.478 0.00 0.00 0.00 2.90
650 652 4.718276 TCATCATTCTCCAGGTTCATGAGA 59.282 41.667 0.00 0.00 33.50 3.27
652 654 5.032327 TCATTCTCCAGGTTCATGAGATG 57.968 43.478 0.00 0.00 35.24 2.90
674 676 4.168760 GCTGTCAATTTCAACATGTAGGC 58.831 43.478 0.00 0.00 0.00 3.93
765 767 2.846193 TCTCGCATAAGGTAATTGGCC 58.154 47.619 0.00 0.00 0.00 5.36
787 789 5.693555 GCCAAGCTAATTAAGAATTGCCATC 59.306 40.000 0.00 0.00 32.38 3.51
844 846 0.997196 GCCGTTACTCGTCACAATCC 59.003 55.000 0.00 0.00 37.94 3.01
909 924 1.064017 TCCATCATTCCCCCGAAAAGG 60.064 52.381 0.00 0.00 40.63 3.11
928 943 4.891992 AGGAAACCTCTGAATTCGAAGA 57.108 40.909 3.35 2.56 0.00 2.87
955 970 7.420002 TCGATCCAAAATAATCAATCAGCTTG 58.580 34.615 0.00 0.00 36.09 4.01
959 974 6.814644 TCCAAAATAATCAATCAGCTTGCAAG 59.185 34.615 22.44 22.44 34.66 4.01
968 983 2.341257 TCAGCTTGCAAGTTCGATCTC 58.659 47.619 26.55 8.21 0.00 2.75
975 990 3.579709 TGCAAGTTCGATCTCAAGAGTC 58.420 45.455 0.00 0.00 0.00 3.36
1668 1693 3.414700 GACACGGAGCGGTTGCAG 61.415 66.667 0.00 0.00 46.23 4.41
1734 1759 2.731571 GCTGGGCGTGACCATCCTA 61.732 63.158 0.00 0.00 40.36 2.94
1914 1940 3.197790 CGGAAGCGGGCATCAGTG 61.198 66.667 0.00 0.00 0.00 3.66
2094 2120 7.061752 AGAACTCTGGAATTTTAAATCGACG 57.938 36.000 0.00 0.00 0.00 5.12
2100 2141 8.575565 TCTGGAATTTTAAATCGACGAGATAG 57.424 34.615 3.01 0.00 38.98 2.08
2101 2142 8.195436 TCTGGAATTTTAAATCGACGAGATAGT 58.805 33.333 3.01 0.00 38.98 2.12
2102 2143 8.712285 TGGAATTTTAAATCGACGAGATAGTT 57.288 30.769 3.01 0.00 38.98 2.24
2103 2144 9.158233 TGGAATTTTAAATCGACGAGATAGTTT 57.842 29.630 3.01 1.10 38.98 2.66
2144 2185 4.944962 TCTGTTGCATTATTTCTGTCGG 57.055 40.909 0.00 0.00 0.00 4.79
2184 2225 2.162338 TTGACGTCGCTAACCAGGGG 62.162 60.000 11.62 0.00 35.48 4.79
2188 2229 2.036098 TCGCTAACCAGGGGACGA 59.964 61.111 0.00 0.00 35.48 4.20
2237 2278 2.500098 CTCTTAGGACCGTCAAATCCCA 59.500 50.000 0.00 0.00 35.38 4.37
2263 2304 2.201732 ACGTATGGCAATTACTCTGCG 58.798 47.619 0.00 0.00 40.88 5.18
2478 2520 2.031682 GCAACTGCTCAACTTTCATCGT 60.032 45.455 0.00 0.00 38.21 3.73
2616 2659 5.010282 ACAACAAGTCCAATAATCACCCTC 58.990 41.667 0.00 0.00 0.00 4.30
2683 2726 5.604650 TCCACACCCCAATAAACTTTTGAAT 59.395 36.000 0.00 0.00 0.00 2.57
2844 2897 9.146984 CATAAATACGGACAACAAAGACTCTTA 57.853 33.333 0.00 0.00 0.00 2.10
2917 2970 8.103924 GCTTTACATTCTGCATTTAAACATTCG 58.896 33.333 0.00 0.00 0.00 3.34
2944 2997 8.783660 ATATACATCTAGTGAACCAAGGAAGA 57.216 34.615 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.754957 TGTGTTTCTTGGTGGCCCAG 60.755 55.000 0.00 0.00 43.15 4.45
1 2 0.324738 TTGTGTTTCTTGGTGGCCCA 60.325 50.000 0.00 0.00 39.65 5.36
2 3 0.104120 GTTGTGTTTCTTGGTGGCCC 59.896 55.000 0.00 0.00 0.00 5.80
3 4 0.104120 GGTTGTGTTTCTTGGTGGCC 59.896 55.000 0.00 0.00 0.00 5.36
4 5 0.820871 TGGTTGTGTTTCTTGGTGGC 59.179 50.000 0.00 0.00 0.00 5.01
5 6 2.430332 ACATGGTTGTGTTTCTTGGTGG 59.570 45.455 0.00 0.00 33.85 4.61
6 7 3.130164 TGACATGGTTGTGTTTCTTGGTG 59.870 43.478 0.00 0.00 35.79 4.17
7 8 3.360867 TGACATGGTTGTGTTTCTTGGT 58.639 40.909 0.00 0.00 35.79 3.67
8 9 4.589216 ATGACATGGTTGTGTTTCTTGG 57.411 40.909 0.00 0.00 35.79 3.61
9 10 7.424803 TCTTTATGACATGGTTGTGTTTCTTG 58.575 34.615 0.00 0.00 35.79 3.02
10 11 7.502226 TCTCTTTATGACATGGTTGTGTTTCTT 59.498 33.333 0.00 0.00 35.79 2.52
11 12 6.998074 TCTCTTTATGACATGGTTGTGTTTCT 59.002 34.615 0.00 0.00 35.79 2.52
12 13 7.078228 GTCTCTTTATGACATGGTTGTGTTTC 58.922 38.462 0.00 0.00 35.79 2.78
13 14 6.545666 TGTCTCTTTATGACATGGTTGTGTTT 59.454 34.615 0.00 0.00 39.23 2.83
14 15 6.017109 GTGTCTCTTTATGACATGGTTGTGTT 60.017 38.462 0.00 0.00 44.74 3.32
15 16 5.470098 GTGTCTCTTTATGACATGGTTGTGT 59.530 40.000 0.00 0.00 44.74 3.72
16 17 5.106555 GGTGTCTCTTTATGACATGGTTGTG 60.107 44.000 0.00 0.00 44.74 3.33
17 18 5.003804 GGTGTCTCTTTATGACATGGTTGT 58.996 41.667 0.00 0.00 44.74 3.32
18 19 5.003160 TGGTGTCTCTTTATGACATGGTTG 58.997 41.667 0.00 0.00 44.74 3.77
19 20 5.013079 TCTGGTGTCTCTTTATGACATGGTT 59.987 40.000 0.00 0.00 44.74 3.67
20 21 4.532126 TCTGGTGTCTCTTTATGACATGGT 59.468 41.667 0.00 0.00 44.74 3.55
21 22 5.089970 TCTGGTGTCTCTTTATGACATGG 57.910 43.478 0.00 0.00 44.74 3.66
22 23 5.728471 ACTCTGGTGTCTCTTTATGACATG 58.272 41.667 0.00 0.00 44.74 3.21
23 24 6.892456 TCTACTCTGGTGTCTCTTTATGACAT 59.108 38.462 0.00 0.00 44.74 3.06
24 25 6.246163 TCTACTCTGGTGTCTCTTTATGACA 58.754 40.000 0.00 0.00 41.48 3.58
25 26 6.183360 CCTCTACTCTGGTGTCTCTTTATGAC 60.183 46.154 0.00 0.00 35.21 3.06
26 27 5.888724 CCTCTACTCTGGTGTCTCTTTATGA 59.111 44.000 0.00 0.00 0.00 2.15
27 28 5.451242 GCCTCTACTCTGGTGTCTCTTTATG 60.451 48.000 0.00 0.00 0.00 1.90
28 29 4.647399 GCCTCTACTCTGGTGTCTCTTTAT 59.353 45.833 0.00 0.00 0.00 1.40
29 30 4.017808 GCCTCTACTCTGGTGTCTCTTTA 58.982 47.826 0.00 0.00 0.00 1.85
30 31 2.829120 GCCTCTACTCTGGTGTCTCTTT 59.171 50.000 0.00 0.00 0.00 2.52
31 32 2.225142 TGCCTCTACTCTGGTGTCTCTT 60.225 50.000 0.00 0.00 0.00 2.85
32 33 1.356059 TGCCTCTACTCTGGTGTCTCT 59.644 52.381 0.00 0.00 0.00 3.10
33 34 1.840737 TGCCTCTACTCTGGTGTCTC 58.159 55.000 0.00 0.00 0.00 3.36
34 35 2.541233 ATGCCTCTACTCTGGTGTCT 57.459 50.000 0.00 0.00 0.00 3.41
35 36 2.362717 GGTATGCCTCTACTCTGGTGTC 59.637 54.545 0.00 0.00 0.00 3.67
36 37 2.292257 TGGTATGCCTCTACTCTGGTGT 60.292 50.000 0.16 0.00 35.27 4.16
37 38 2.388735 TGGTATGCCTCTACTCTGGTG 58.611 52.381 0.16 0.00 35.27 4.17
38 39 2.848678 TGGTATGCCTCTACTCTGGT 57.151 50.000 0.16 0.00 35.27 4.00
39 40 3.300388 TCTTGGTATGCCTCTACTCTGG 58.700 50.000 0.16 0.00 35.27 3.86
40 41 4.739137 GCTTCTTGGTATGCCTCTACTCTG 60.739 50.000 0.16 0.00 35.27 3.35
41 42 3.386402 GCTTCTTGGTATGCCTCTACTCT 59.614 47.826 0.16 0.00 35.27 3.24
42 43 3.133003 TGCTTCTTGGTATGCCTCTACTC 59.867 47.826 0.16 0.00 35.27 2.59
43 44 3.107601 TGCTTCTTGGTATGCCTCTACT 58.892 45.455 0.16 0.00 35.27 2.57
44 45 3.543680 TGCTTCTTGGTATGCCTCTAC 57.456 47.619 0.16 0.00 35.27 2.59
45 46 3.711190 TGATGCTTCTTGGTATGCCTCTA 59.289 43.478 0.16 0.00 35.27 2.43
46 47 2.507058 TGATGCTTCTTGGTATGCCTCT 59.493 45.455 0.16 0.00 35.27 3.69
47 48 2.923121 TGATGCTTCTTGGTATGCCTC 58.077 47.619 0.16 0.00 35.27 4.70
48 49 3.370840 TTGATGCTTCTTGGTATGCCT 57.629 42.857 0.16 0.00 35.27 4.75
49 50 3.243636 CCATTGATGCTTCTTGGTATGCC 60.244 47.826 11.56 0.00 0.00 4.40
50 51 3.797865 GCCATTGATGCTTCTTGGTATGC 60.798 47.826 17.42 5.69 31.95 3.14
51 52 3.549423 CGCCATTGATGCTTCTTGGTATG 60.549 47.826 17.42 8.89 31.95 2.39
52 53 2.620115 CGCCATTGATGCTTCTTGGTAT 59.380 45.455 17.42 0.00 31.95 2.73
53 54 2.016318 CGCCATTGATGCTTCTTGGTA 58.984 47.619 17.42 0.00 31.95 3.25
54 55 0.813184 CGCCATTGATGCTTCTTGGT 59.187 50.000 17.42 0.00 31.95 3.67
55 56 0.526954 GCGCCATTGATGCTTCTTGG 60.527 55.000 14.07 14.07 0.00 3.61
56 57 0.864377 CGCGCCATTGATGCTTCTTG 60.864 55.000 0.00 0.00 0.00 3.02
57 58 1.026182 TCGCGCCATTGATGCTTCTT 61.026 50.000 0.00 0.00 0.00 2.52
58 59 1.026182 TTCGCGCCATTGATGCTTCT 61.026 50.000 0.00 0.00 0.00 2.85
59 60 0.863119 GTTCGCGCCATTGATGCTTC 60.863 55.000 0.00 0.00 0.00 3.86
60 61 1.137404 GTTCGCGCCATTGATGCTT 59.863 52.632 0.00 0.00 0.00 3.91
61 62 2.793946 GTTCGCGCCATTGATGCT 59.206 55.556 0.00 0.00 0.00 3.79
62 63 2.576287 TTCGTTCGCGCCATTGATGC 62.576 55.000 0.00 0.00 41.05 3.91
63 64 0.587242 CTTCGTTCGCGCCATTGATG 60.587 55.000 0.00 0.00 41.05 3.07
64 65 1.705337 CCTTCGTTCGCGCCATTGAT 61.705 55.000 0.00 0.00 41.05 2.57
65 66 2.387445 CCTTCGTTCGCGCCATTGA 61.387 57.895 0.00 0.00 41.05 2.57
66 67 2.098298 CCTTCGTTCGCGCCATTG 59.902 61.111 0.00 0.00 41.05 2.82
67 68 3.124921 CCCTTCGTTCGCGCCATT 61.125 61.111 0.00 0.00 41.05 3.16
78 79 2.354773 GCTATCCGACGCCCTTCG 60.355 66.667 0.00 0.00 45.38 3.79
79 80 2.029221 GGCTATCCGACGCCCTTC 59.971 66.667 0.00 0.00 40.43 3.46
89 90 1.370657 CGCTCGAACTCGGCTATCC 60.371 63.158 0.00 0.00 40.29 2.59
90 91 1.370657 CCGCTCGAACTCGGCTATC 60.371 63.158 7.36 0.00 39.14 2.08
91 92 2.722487 CCGCTCGAACTCGGCTAT 59.278 61.111 7.36 0.00 39.14 2.97
116 117 3.041940 CTTCACCGACGGCACACC 61.042 66.667 15.39 0.00 0.00 4.16
117 118 3.712881 GCTTCACCGACGGCACAC 61.713 66.667 15.39 0.00 0.00 3.82
118 119 4.980805 GGCTTCACCGACGGCACA 62.981 66.667 15.39 0.00 0.00 4.57
141 142 1.878775 GGTCTCAGTGGCATGTTGC 59.121 57.895 0.00 0.00 44.08 4.17
142 143 0.320683 TCGGTCTCAGTGGCATGTTG 60.321 55.000 0.00 0.00 0.00 3.33
143 144 0.396435 TTCGGTCTCAGTGGCATGTT 59.604 50.000 0.00 0.00 0.00 2.71
144 145 0.036952 CTTCGGTCTCAGTGGCATGT 60.037 55.000 0.00 0.00 0.00 3.21
145 146 0.742281 CCTTCGGTCTCAGTGGCATG 60.742 60.000 0.00 0.00 0.00 4.06
146 147 1.599047 CCTTCGGTCTCAGTGGCAT 59.401 57.895 0.00 0.00 0.00 4.40
147 148 2.583441 CCCTTCGGTCTCAGTGGCA 61.583 63.158 0.00 0.00 0.00 4.92
148 149 2.266055 CCCTTCGGTCTCAGTGGC 59.734 66.667 0.00 0.00 0.00 5.01
149 150 2.266055 GCCCTTCGGTCTCAGTGG 59.734 66.667 0.00 0.00 0.00 4.00
150 151 2.125912 CGCCCTTCGGTCTCAGTG 60.126 66.667 0.00 0.00 33.78 3.66
151 152 4.070552 GCGCCCTTCGGTCTCAGT 62.071 66.667 0.00 0.00 38.94 3.41
152 153 2.859273 ATTGCGCCCTTCGGTCTCAG 62.859 60.000 4.18 0.00 38.94 3.35
153 154 1.609635 TATTGCGCCCTTCGGTCTCA 61.610 55.000 4.18 0.00 38.94 3.27
154 155 1.143183 TATTGCGCCCTTCGGTCTC 59.857 57.895 4.18 0.00 38.94 3.36
155 156 1.153429 GTATTGCGCCCTTCGGTCT 60.153 57.895 4.18 0.00 38.94 3.85
156 157 2.178235 GGTATTGCGCCCTTCGGTC 61.178 63.158 4.18 0.00 38.94 4.79
157 158 2.124860 GGTATTGCGCCCTTCGGT 60.125 61.111 4.18 0.00 38.94 4.69
158 159 2.900337 GGGTATTGCGCCCTTCGG 60.900 66.667 4.18 0.00 42.81 4.30
159 160 2.989055 ATCGGGTATTGCGCCCTTCG 62.989 60.000 4.18 1.48 43.92 3.79
160 161 1.227853 ATCGGGTATTGCGCCCTTC 60.228 57.895 4.18 0.00 43.92 3.46
161 162 1.525995 CATCGGGTATTGCGCCCTT 60.526 57.895 4.18 0.00 43.92 3.95
162 163 1.404479 TACATCGGGTATTGCGCCCT 61.404 55.000 4.18 0.00 43.92 5.19
163 164 1.070105 TACATCGGGTATTGCGCCC 59.930 57.895 4.18 0.00 42.68 6.13
164 165 0.249741 AGTACATCGGGTATTGCGCC 60.250 55.000 4.18 0.00 33.76 6.53
165 166 2.056577 GTAGTACATCGGGTATTGCGC 58.943 52.381 0.00 0.00 33.76 6.09
166 167 2.034939 TGGTAGTACATCGGGTATTGCG 59.965 50.000 2.06 0.00 33.76 4.85
167 168 3.387397 GTGGTAGTACATCGGGTATTGC 58.613 50.000 2.06 0.00 33.76 3.56
168 169 3.551454 CGGTGGTAGTACATCGGGTATTG 60.551 52.174 2.06 0.00 41.08 1.90
169 170 2.624838 CGGTGGTAGTACATCGGGTATT 59.375 50.000 2.06 0.00 41.08 1.89
170 171 2.233271 CGGTGGTAGTACATCGGGTAT 58.767 52.381 2.06 0.00 41.08 2.73
171 172 1.679139 CGGTGGTAGTACATCGGGTA 58.321 55.000 2.06 0.00 41.08 3.69
172 173 2.496942 CGGTGGTAGTACATCGGGT 58.503 57.895 2.06 0.00 41.08 5.28
175 176 1.737816 CCCCGGTGGTAGTACATCG 59.262 63.158 0.00 2.79 44.21 3.84
186 187 4.278513 TGCCCTTTGACCCCGGTG 62.279 66.667 0.00 0.00 0.00 4.94
187 188 3.966543 CTGCCCTTTGACCCCGGT 61.967 66.667 0.00 0.00 0.00 5.28
189 190 3.944250 ATGCTGCCCTTTGACCCCG 62.944 63.158 0.00 0.00 0.00 5.73
190 191 2.037847 ATGCTGCCCTTTGACCCC 59.962 61.111 0.00 0.00 0.00 4.95
191 192 3.010413 GCATGCTGCCCTTTGACCC 62.010 63.158 11.37 0.00 37.42 4.46
192 193 2.575461 GCATGCTGCCCTTTGACC 59.425 61.111 11.37 0.00 37.42 4.02
213 214 4.181010 CATCCTGGGGTGGCCTCG 62.181 72.222 3.32 0.00 0.00 4.63
214 215 4.512914 GCATCCTGGGGTGGCCTC 62.513 72.222 3.32 0.00 0.00 4.70
218 219 4.133373 CTGGGCATCCTGGGGTGG 62.133 72.222 1.83 0.00 0.00 4.61
219 220 4.133373 CCTGGGCATCCTGGGGTG 62.133 72.222 0.00 0.00 45.34 4.61
231 232 4.748144 GGGTGGAGCTTGCCTGGG 62.748 72.222 0.00 0.00 0.00 4.45
232 233 3.512154 TTGGGTGGAGCTTGCCTGG 62.512 63.158 0.00 0.00 0.00 4.45
233 234 1.975407 CTTGGGTGGAGCTTGCCTG 60.975 63.158 0.00 0.00 0.00 4.85
234 235 2.417558 GACTTGGGTGGAGCTTGCCT 62.418 60.000 0.00 0.00 0.00 4.75
235 236 1.973812 GACTTGGGTGGAGCTTGCC 60.974 63.158 0.00 0.00 0.00 4.52
236 237 2.328099 CGACTTGGGTGGAGCTTGC 61.328 63.158 0.00 0.00 0.00 4.01
237 238 2.328099 GCGACTTGGGTGGAGCTTG 61.328 63.158 0.00 0.00 0.00 4.01
238 239 2.032681 GCGACTTGGGTGGAGCTT 59.967 61.111 0.00 0.00 0.00 3.74
239 240 4.021925 GGCGACTTGGGTGGAGCT 62.022 66.667 0.00 0.00 0.00 4.09
240 241 3.842925 TTGGCGACTTGGGTGGAGC 62.843 63.158 0.00 0.00 0.00 4.70
241 242 1.672356 CTTGGCGACTTGGGTGGAG 60.672 63.158 0.00 0.00 0.00 3.86
242 243 2.144078 TCTTGGCGACTTGGGTGGA 61.144 57.895 0.00 0.00 0.00 4.02
243 244 1.966451 GTCTTGGCGACTTGGGTGG 60.966 63.158 0.00 0.00 39.61 4.61
244 245 0.817634 TTGTCTTGGCGACTTGGGTG 60.818 55.000 0.00 0.00 43.25 4.61
245 246 0.106918 TTTGTCTTGGCGACTTGGGT 60.107 50.000 0.00 0.00 43.25 4.51
246 247 0.593128 CTTTGTCTTGGCGACTTGGG 59.407 55.000 0.00 0.00 43.25 4.12
247 248 0.593128 CCTTTGTCTTGGCGACTTGG 59.407 55.000 0.00 0.00 43.25 3.61
248 249 0.040067 GCCTTTGTCTTGGCGACTTG 60.040 55.000 0.00 0.00 43.25 3.16
249 250 2.331265 GCCTTTGTCTTGGCGACTT 58.669 52.632 0.00 0.00 43.25 3.01
250 251 4.065110 GCCTTTGTCTTGGCGACT 57.935 55.556 0.00 0.00 43.25 4.18
255 256 1.530013 CTGGCAGGCCTTTGTCTTGG 61.530 60.000 0.00 0.00 36.94 3.61
256 257 1.530013 CCTGGCAGGCCTTTGTCTTG 61.530 60.000 22.68 0.00 36.94 3.02
257 258 1.228675 CCTGGCAGGCCTTTGTCTT 60.229 57.895 22.68 0.00 36.94 3.01
258 259 2.437897 CCTGGCAGGCCTTTGTCT 59.562 61.111 22.68 0.00 36.94 3.41
259 260 2.677875 CCCTGGCAGGCCTTTGTC 60.678 66.667 28.51 0.00 32.73 3.18
260 261 3.511610 ACCCTGGCAGGCCTTTGT 61.512 61.111 28.51 16.88 32.73 2.83
261 262 2.677875 GACCCTGGCAGGCCTTTG 60.678 66.667 28.51 16.18 32.73 2.77
262 263 2.310930 TTTGACCCTGGCAGGCCTTT 62.311 55.000 28.51 11.35 32.73 3.11
263 264 2.720144 CTTTGACCCTGGCAGGCCTT 62.720 60.000 28.51 14.03 32.73 4.35
264 265 3.185203 TTTGACCCTGGCAGGCCT 61.185 61.111 28.51 14.85 32.73 5.19
265 266 2.677875 CTTTGACCCTGGCAGGCC 60.678 66.667 28.51 20.70 32.73 5.19
266 267 3.376918 GCTTTGACCCTGGCAGGC 61.377 66.667 28.51 15.89 32.73 4.85
267 268 2.677875 GGCTTTGACCCTGGCAGG 60.678 66.667 27.04 27.04 34.30 4.85
268 269 0.901580 ATTGGCTTTGACCCTGGCAG 60.902 55.000 7.75 7.75 37.55 4.85
269 270 1.155859 ATTGGCTTTGACCCTGGCA 59.844 52.632 0.00 0.00 34.48 4.92
270 271 1.187567 ACATTGGCTTTGACCCTGGC 61.188 55.000 0.00 0.00 0.00 4.85
271 272 0.604578 CACATTGGCTTTGACCCTGG 59.395 55.000 0.00 0.00 0.00 4.45
272 273 0.604578 CCACATTGGCTTTGACCCTG 59.395 55.000 0.00 0.00 0.00 4.45
273 274 0.482446 TCCACATTGGCTTTGACCCT 59.518 50.000 0.00 0.00 37.47 4.34
274 275 0.890683 CTCCACATTGGCTTTGACCC 59.109 55.000 0.00 0.00 37.47 4.46
275 276 1.909700 TCTCCACATTGGCTTTGACC 58.090 50.000 0.00 0.00 37.47 4.02
276 277 3.149196 TCTTCTCCACATTGGCTTTGAC 58.851 45.455 0.00 0.00 37.47 3.18
277 278 3.507162 TCTTCTCCACATTGGCTTTGA 57.493 42.857 0.00 0.00 37.47 2.69
278 279 3.613432 GCTTCTTCTCCACATTGGCTTTG 60.613 47.826 0.00 0.00 37.47 2.77
279 280 2.560105 GCTTCTTCTCCACATTGGCTTT 59.440 45.455 0.00 0.00 37.47 3.51
280 281 2.165998 GCTTCTTCTCCACATTGGCTT 58.834 47.619 0.00 0.00 37.47 4.35
281 282 1.074405 TGCTTCTTCTCCACATTGGCT 59.926 47.619 0.00 0.00 37.47 4.75
282 283 1.471684 CTGCTTCTTCTCCACATTGGC 59.528 52.381 0.00 0.00 37.47 4.52
283 284 1.471684 GCTGCTTCTTCTCCACATTGG 59.528 52.381 0.00 0.00 39.43 3.16
284 285 2.156917 TGCTGCTTCTTCTCCACATTG 58.843 47.619 0.00 0.00 0.00 2.82
285 286 2.574006 TGCTGCTTCTTCTCCACATT 57.426 45.000 0.00 0.00 0.00 2.71
286 287 2.039480 TCTTGCTGCTTCTTCTCCACAT 59.961 45.455 0.00 0.00 0.00 3.21
287 288 1.417517 TCTTGCTGCTTCTTCTCCACA 59.582 47.619 0.00 0.00 0.00 4.17
288 289 1.803555 GTCTTGCTGCTTCTTCTCCAC 59.196 52.381 0.00 0.00 0.00 4.02
289 290 1.417517 TGTCTTGCTGCTTCTTCTCCA 59.582 47.619 0.00 0.00 0.00 3.86
290 291 1.803555 GTGTCTTGCTGCTTCTTCTCC 59.196 52.381 0.00 0.00 0.00 3.71
291 292 1.458827 CGTGTCTTGCTGCTTCTTCTC 59.541 52.381 0.00 0.00 0.00 2.87
292 293 1.069204 TCGTGTCTTGCTGCTTCTTCT 59.931 47.619 0.00 0.00 0.00 2.85
293 294 1.458827 CTCGTGTCTTGCTGCTTCTTC 59.541 52.381 0.00 0.00 0.00 2.87
294 295 1.202580 ACTCGTGTCTTGCTGCTTCTT 60.203 47.619 0.00 0.00 0.00 2.52
295 296 0.390860 ACTCGTGTCTTGCTGCTTCT 59.609 50.000 0.00 0.00 0.00 2.85
296 297 0.787183 GACTCGTGTCTTGCTGCTTC 59.213 55.000 10.29 0.00 39.94 3.86
297 298 0.601311 GGACTCGTGTCTTGCTGCTT 60.601 55.000 16.45 0.00 42.54 3.91
298 299 1.005630 GGACTCGTGTCTTGCTGCT 60.006 57.895 16.45 0.00 42.54 4.24
299 300 1.300931 TGGACTCGTGTCTTGCTGC 60.301 57.895 16.45 0.00 42.54 5.25
300 301 0.946221 GGTGGACTCGTGTCTTGCTG 60.946 60.000 16.45 0.00 42.54 4.41
301 302 1.367840 GGTGGACTCGTGTCTTGCT 59.632 57.895 16.45 0.00 42.54 3.91
302 303 1.668151 GGGTGGACTCGTGTCTTGC 60.668 63.158 16.45 7.57 42.54 4.01
303 304 1.372997 CGGGTGGACTCGTGTCTTG 60.373 63.158 16.45 0.39 42.54 3.02
304 305 1.111116 TTCGGGTGGACTCGTGTCTT 61.111 55.000 16.45 0.00 42.54 3.01
305 306 1.524863 CTTCGGGTGGACTCGTGTCT 61.525 60.000 16.45 0.00 42.54 3.41
306 307 1.080705 CTTCGGGTGGACTCGTGTC 60.081 63.158 9.11 9.11 42.22 3.67
307 308 3.048602 CTTCGGGTGGACTCGTGT 58.951 61.111 0.00 0.00 0.00 4.49
308 309 2.432628 GCTTCGGGTGGACTCGTG 60.433 66.667 0.00 0.00 0.00 4.35
309 310 2.915659 TGCTTCGGGTGGACTCGT 60.916 61.111 0.00 0.00 0.00 4.18
310 311 2.125912 CTGCTTCGGGTGGACTCG 60.126 66.667 0.00 0.00 0.00 4.18
311 312 0.034896 TTTCTGCTTCGGGTGGACTC 59.965 55.000 0.00 0.00 0.00 3.36
312 313 0.035458 CTTTCTGCTTCGGGTGGACT 59.965 55.000 0.00 0.00 0.00 3.85
313 314 0.034896 TCTTTCTGCTTCGGGTGGAC 59.965 55.000 0.00 0.00 0.00 4.02
314 315 0.762418 TTCTTTCTGCTTCGGGTGGA 59.238 50.000 0.00 0.00 0.00 4.02
315 316 1.740025 GATTCTTTCTGCTTCGGGTGG 59.260 52.381 0.00 0.00 0.00 4.61
316 317 1.740025 GGATTCTTTCTGCTTCGGGTG 59.260 52.381 0.00 0.00 0.00 4.61
317 318 1.351017 TGGATTCTTTCTGCTTCGGGT 59.649 47.619 0.00 0.00 0.00 5.28
318 319 2.113860 TGGATTCTTTCTGCTTCGGG 57.886 50.000 0.00 0.00 0.00 5.14
319 320 3.126000 GTCTTGGATTCTTTCTGCTTCGG 59.874 47.826 0.00 0.00 0.00 4.30
320 321 3.181526 CGTCTTGGATTCTTTCTGCTTCG 60.182 47.826 0.00 0.00 0.00 3.79
321 322 3.997021 TCGTCTTGGATTCTTTCTGCTTC 59.003 43.478 0.00 0.00 0.00 3.86
322 323 4.008074 TCGTCTTGGATTCTTTCTGCTT 57.992 40.909 0.00 0.00 0.00 3.91
323 324 3.685139 TCGTCTTGGATTCTTTCTGCT 57.315 42.857 0.00 0.00 0.00 4.24
324 325 3.486542 GCATCGTCTTGGATTCTTTCTGC 60.487 47.826 0.00 0.00 0.00 4.26
325 326 3.064545 GGCATCGTCTTGGATTCTTTCTG 59.935 47.826 0.00 0.00 0.00 3.02
326 327 3.274288 GGCATCGTCTTGGATTCTTTCT 58.726 45.455 0.00 0.00 0.00 2.52
327 328 2.356069 GGGCATCGTCTTGGATTCTTTC 59.644 50.000 0.00 0.00 0.00 2.62
328 329 2.369394 GGGCATCGTCTTGGATTCTTT 58.631 47.619 0.00 0.00 0.00 2.52
329 330 1.408822 GGGGCATCGTCTTGGATTCTT 60.409 52.381 0.00 0.00 0.00 2.52
330 331 0.181350 GGGGCATCGTCTTGGATTCT 59.819 55.000 0.00 0.00 0.00 2.40
331 332 0.107214 TGGGGCATCGTCTTGGATTC 60.107 55.000 0.00 0.00 0.00 2.52
332 333 0.331278 TTGGGGCATCGTCTTGGATT 59.669 50.000 0.00 0.00 0.00 3.01
333 334 0.107017 CTTGGGGCATCGTCTTGGAT 60.107 55.000 0.00 0.00 0.00 3.41
334 335 1.299648 CTTGGGGCATCGTCTTGGA 59.700 57.895 0.00 0.00 0.00 3.53
335 336 1.750399 CCTTGGGGCATCGTCTTGG 60.750 63.158 0.00 0.00 0.00 3.61
336 337 0.745845 CTCCTTGGGGCATCGTCTTG 60.746 60.000 0.00 0.00 0.00 3.02
337 338 1.604378 CTCCTTGGGGCATCGTCTT 59.396 57.895 0.00 0.00 0.00 3.01
338 339 2.370445 CCTCCTTGGGGCATCGTCT 61.370 63.158 0.00 0.00 0.00 4.18
339 340 1.910580 TTCCTCCTTGGGGCATCGTC 61.911 60.000 0.00 0.00 36.20 4.20
340 341 1.497309 TTTCCTCCTTGGGGCATCGT 61.497 55.000 0.00 0.00 36.20 3.73
341 342 1.032114 GTTTCCTCCTTGGGGCATCG 61.032 60.000 0.00 0.00 36.20 3.84
342 343 0.332972 AGTTTCCTCCTTGGGGCATC 59.667 55.000 0.00 0.00 36.20 3.91
343 344 0.040204 CAGTTTCCTCCTTGGGGCAT 59.960 55.000 0.00 0.00 36.20 4.40
344 345 1.460255 CAGTTTCCTCCTTGGGGCA 59.540 57.895 0.00 0.00 36.20 5.36
345 346 1.304464 CCAGTTTCCTCCTTGGGGC 60.304 63.158 0.00 0.00 36.20 5.80
346 347 1.304464 GCCAGTTTCCTCCTTGGGG 60.304 63.158 0.00 0.00 36.20 4.96
347 348 0.895559 GTGCCAGTTTCCTCCTTGGG 60.896 60.000 0.00 0.00 36.20 4.12
348 349 0.895559 GGTGCCAGTTTCCTCCTTGG 60.896 60.000 0.00 0.00 37.10 3.61
349 350 0.895559 GGGTGCCAGTTTCCTCCTTG 60.896 60.000 0.00 0.00 0.00 3.61
350 351 1.460699 GGGTGCCAGTTTCCTCCTT 59.539 57.895 0.00 0.00 0.00 3.36
351 352 2.895424 CGGGTGCCAGTTTCCTCCT 61.895 63.158 0.00 0.00 0.00 3.69
352 353 2.359975 CGGGTGCCAGTTTCCTCC 60.360 66.667 0.00 0.00 0.00 4.30
353 354 3.056328 GCGGGTGCCAGTTTCCTC 61.056 66.667 0.00 0.00 33.98 3.71
373 374 2.351726 GCCGATTGTAAGGTGATGACAC 59.648 50.000 0.00 0.00 45.27 3.67
374 375 2.027653 TGCCGATTGTAAGGTGATGACA 60.028 45.455 0.00 0.00 0.00 3.58
375 376 2.351726 GTGCCGATTGTAAGGTGATGAC 59.648 50.000 0.00 0.00 0.00 3.06
376 377 2.236146 AGTGCCGATTGTAAGGTGATGA 59.764 45.455 0.00 0.00 0.00 2.92
377 378 2.632377 AGTGCCGATTGTAAGGTGATG 58.368 47.619 0.00 0.00 0.00 3.07
378 379 3.350219 AAGTGCCGATTGTAAGGTGAT 57.650 42.857 0.00 0.00 0.00 3.06
379 380 2.851263 AAGTGCCGATTGTAAGGTGA 57.149 45.000 0.00 0.00 0.00 4.02
380 381 3.564511 CAAAAGTGCCGATTGTAAGGTG 58.435 45.455 0.00 0.00 0.00 4.00
381 382 2.556622 CCAAAAGTGCCGATTGTAAGGT 59.443 45.455 0.00 0.00 0.00 3.50
382 383 2.556622 ACCAAAAGTGCCGATTGTAAGG 59.443 45.455 0.00 0.00 0.00 2.69
383 384 3.915437 ACCAAAAGTGCCGATTGTAAG 57.085 42.857 0.00 0.00 0.00 2.34
384 385 4.657436 AAACCAAAAGTGCCGATTGTAA 57.343 36.364 0.00 0.00 0.00 2.41
385 386 4.579340 TGTAAACCAAAAGTGCCGATTGTA 59.421 37.500 0.00 0.00 0.00 2.41
386 387 3.381908 TGTAAACCAAAAGTGCCGATTGT 59.618 39.130 0.00 0.00 0.00 2.71
387 388 3.971150 TGTAAACCAAAAGTGCCGATTG 58.029 40.909 0.00 0.00 0.00 2.67
388 389 4.657436 TTGTAAACCAAAAGTGCCGATT 57.343 36.364 0.00 0.00 0.00 3.34
389 390 4.657436 TTTGTAAACCAAAAGTGCCGAT 57.343 36.364 0.00 0.00 40.05 4.18
390 391 4.657436 ATTTGTAAACCAAAAGTGCCGA 57.343 36.364 0.00 0.00 45.72 5.54
391 392 5.923684 ACATATTTGTAAACCAAAAGTGCCG 59.076 36.000 0.00 0.00 45.72 5.69
392 393 7.722795 AACATATTTGTAAACCAAAAGTGCC 57.277 32.000 0.00 0.00 45.72 5.01
393 394 8.001549 CGAAACATATTTGTAAACCAAAAGTGC 58.998 33.333 0.00 0.00 45.72 4.40
394 395 9.239002 TCGAAACATATTTGTAAACCAAAAGTG 57.761 29.630 0.00 0.00 45.72 3.16
395 396 9.804758 TTCGAAACATATTTGTAAACCAAAAGT 57.195 25.926 0.00 0.00 45.72 2.66
397 398 9.582431 TGTTCGAAACATATTTGTAAACCAAAA 57.418 25.926 0.00 0.00 40.39 2.44
398 399 9.582431 TTGTTCGAAACATATTTGTAAACCAAA 57.418 25.926 0.00 0.00 43.12 3.28
399 400 9.582431 TTTGTTCGAAACATATTTGTAAACCAA 57.418 25.926 0.00 0.00 41.79 3.67
400 401 9.582431 TTTTGTTCGAAACATATTTGTAAACCA 57.418 25.926 0.00 0.00 41.79 3.67
406 407 9.959749 ACTGTATTTTGTTCGAAACATATTTGT 57.040 25.926 0.00 0.00 41.79 2.83
408 409 9.620660 GGACTGTATTTTGTTCGAAACATATTT 57.379 29.630 0.00 0.00 41.79 1.40
409 410 8.241367 GGGACTGTATTTTGTTCGAAACATATT 58.759 33.333 0.00 0.00 41.79 1.28
410 411 7.610305 AGGGACTGTATTTTGTTCGAAACATAT 59.390 33.333 0.00 1.25 38.35 1.78
411 412 6.938030 AGGGACTGTATTTTGTTCGAAACATA 59.062 34.615 0.00 0.00 38.35 2.29
412 413 5.768164 AGGGACTGTATTTTGTTCGAAACAT 59.232 36.000 0.00 0.00 38.35 2.71
413 414 5.127491 AGGGACTGTATTTTGTTCGAAACA 58.873 37.500 0.00 0.00 37.18 2.83
414 415 5.684550 AGGGACTGTATTTTGTTCGAAAC 57.315 39.130 0.00 0.00 37.18 2.78
430 431 5.615925 AGATCTTATTAAACGCAGGGACT 57.384 39.130 0.00 0.00 43.88 3.85
462 463 9.689501 TTACAGAACCCGGAGAAATATATTTTT 57.310 29.630 11.92 6.55 0.00 1.94
463 464 9.689501 TTTACAGAACCCGGAGAAATATATTTT 57.310 29.630 11.92 2.96 0.00 1.82
464 465 9.117183 GTTTACAGAACCCGGAGAAATATATTT 57.883 33.333 10.51 10.51 0.00 1.40
465 466 8.269317 TGTTTACAGAACCCGGAGAAATATATT 58.731 33.333 0.73 0.00 0.00 1.28
466 467 7.798071 TGTTTACAGAACCCGGAGAAATATAT 58.202 34.615 0.73 0.00 0.00 0.86
467 468 7.185318 TGTTTACAGAACCCGGAGAAATATA 57.815 36.000 0.73 0.00 0.00 0.86
468 469 6.057321 TGTTTACAGAACCCGGAGAAATAT 57.943 37.500 0.73 0.00 0.00 1.28
469 470 5.486735 TGTTTACAGAACCCGGAGAAATA 57.513 39.130 0.73 0.00 0.00 1.40
470 471 4.360951 TGTTTACAGAACCCGGAGAAAT 57.639 40.909 0.73 0.00 0.00 2.17
471 472 3.842007 TGTTTACAGAACCCGGAGAAA 57.158 42.857 0.73 0.00 0.00 2.52
472 473 3.842007 TTGTTTACAGAACCCGGAGAA 57.158 42.857 0.73 0.00 0.00 2.87
473 474 3.842007 TTTGTTTACAGAACCCGGAGA 57.158 42.857 0.73 0.00 0.00 3.71
474 475 4.904253 TTTTTGTTTACAGAACCCGGAG 57.096 40.909 0.73 0.00 0.00 4.63
494 495 3.165071 ACTCGGGGCATTTGAGATTTTT 58.835 40.909 0.00 0.00 33.93 1.94
495 496 2.807676 ACTCGGGGCATTTGAGATTTT 58.192 42.857 0.00 0.00 33.93 1.82
496 497 2.514458 ACTCGGGGCATTTGAGATTT 57.486 45.000 0.00 0.00 33.93 2.17
497 498 2.158755 CCTACTCGGGGCATTTGAGATT 60.159 50.000 0.00 0.00 33.93 2.40
498 499 1.417890 CCTACTCGGGGCATTTGAGAT 59.582 52.381 0.00 0.00 33.93 2.75
499 500 0.830648 CCTACTCGGGGCATTTGAGA 59.169 55.000 0.00 0.00 33.93 3.27
500 501 0.830648 TCCTACTCGGGGCATTTGAG 59.169 55.000 0.00 0.00 35.85 3.02
501 502 0.830648 CTCCTACTCGGGGCATTTGA 59.169 55.000 0.00 0.00 0.00 2.69
502 503 3.386543 CTCCTACTCGGGGCATTTG 57.613 57.895 0.00 0.00 0.00 2.32
508 509 2.223803 ATATGAGCTCCTACTCGGGG 57.776 55.000 12.15 0.00 39.68 5.73
509 510 5.923733 ATTAATATGAGCTCCTACTCGGG 57.076 43.478 12.15 0.00 39.68 5.14
510 511 7.607250 AGAAATTAATATGAGCTCCTACTCGG 58.393 38.462 12.15 0.00 39.68 4.63
511 512 9.482627 AAAGAAATTAATATGAGCTCCTACTCG 57.517 33.333 12.15 0.00 39.68 4.18
587 589 1.569072 GAAGGGGGCTATCTTTGGGAA 59.431 52.381 0.00 0.00 0.00 3.97
598 600 0.779997 AACACATGAAGAAGGGGGCT 59.220 50.000 0.00 0.00 0.00 5.19
599 601 0.890683 CAACACATGAAGAAGGGGGC 59.109 55.000 0.00 0.00 0.00 5.80
600 602 2.292828 ACAACACATGAAGAAGGGGG 57.707 50.000 0.00 0.00 0.00 5.40
602 604 4.136796 TCAGAACAACACATGAAGAAGGG 58.863 43.478 0.00 0.00 0.00 3.95
603 605 5.756195 TTCAGAACAACACATGAAGAAGG 57.244 39.130 0.00 0.00 0.00 3.46
604 606 7.420002 TGATTTCAGAACAACACATGAAGAAG 58.580 34.615 0.00 0.00 33.53 2.85
606 608 6.940831 TGATTTCAGAACAACACATGAAGA 57.059 33.333 0.00 0.00 33.53 2.87
607 609 7.364970 TGATGATTTCAGAACAACACATGAAG 58.635 34.615 0.00 0.00 33.53 3.02
610 612 8.027189 AGAATGATGATTTCAGAACAACACATG 58.973 33.333 0.00 0.00 37.89 3.21
611 613 8.118976 AGAATGATGATTTCAGAACAACACAT 57.881 30.769 0.00 0.00 37.89 3.21
612 614 7.308770 GGAGAATGATGATTTCAGAACAACACA 60.309 37.037 0.00 0.00 37.89 3.72
613 615 7.025963 GGAGAATGATGATTTCAGAACAACAC 58.974 38.462 0.00 0.00 37.89 3.32
644 646 5.705902 TGTTGAAATTGACAGCATCTCATG 58.294 37.500 0.00 0.00 0.00 3.07
645 647 5.970317 TGTTGAAATTGACAGCATCTCAT 57.030 34.783 0.00 0.00 0.00 2.90
649 651 6.032094 CCTACATGTTGAAATTGACAGCATC 58.968 40.000 2.30 0.00 37.15 3.91
650 652 5.622914 GCCTACATGTTGAAATTGACAGCAT 60.623 40.000 2.30 8.58 39.12 3.79
652 654 4.168760 GCCTACATGTTGAAATTGACAGC 58.831 43.478 2.30 0.00 0.00 4.40
674 676 1.053264 ATACTCAGGCAGGCTGGAGG 61.053 60.000 23.18 15.41 0.00 4.30
683 685 3.780294 AGTTTGGTGGATATACTCAGGCA 59.220 43.478 0.00 0.00 0.00 4.75
686 688 5.878406 AGGAGTTTGGTGGATATACTCAG 57.122 43.478 0.00 0.00 37.54 3.35
765 767 8.192774 TGAAGATGGCAATTCTTAATTAGCTTG 58.807 33.333 14.51 0.00 33.65 4.01
787 789 4.589216 TTCCTTGGAAAGCAATGTGAAG 57.411 40.909 0.00 0.00 44.44 3.02
844 846 0.388907 CTGAAAATTGTGGCGGCTGG 60.389 55.000 11.43 0.00 0.00 4.85
909 924 5.771602 GAGTCTTCGAATTCAGAGGTTTC 57.228 43.478 6.22 4.10 0.00 2.78
928 943 6.769822 AGCTGATTGATTATTTTGGATCGAGT 59.230 34.615 0.00 0.00 0.00 4.18
942 957 3.503363 TCGAACTTGCAAGCTGATTGATT 59.497 39.130 26.27 10.25 41.83 2.57
955 970 2.926838 GGACTCTTGAGATCGAACTTGC 59.073 50.000 4.49 0.00 0.00 4.01
959 974 3.729462 CGTCTGGACTCTTGAGATCGAAC 60.729 52.174 4.49 0.00 0.00 3.95
968 983 1.143305 CTTGTGCGTCTGGACTCTTG 58.857 55.000 0.00 0.00 37.34 3.02
1243 1259 3.799755 GTGGCCGCGGTGAATGAC 61.800 66.667 28.70 7.66 0.00 3.06
1275 1291 1.302431 CCGCACAACATCCACCTCA 60.302 57.895 0.00 0.00 0.00 3.86
1629 1645 3.634448 CGAATCTCTCGGGGCTCATATAT 59.366 47.826 0.00 0.00 44.20 0.86
1632 1648 1.248486 CGAATCTCTCGGGGCTCATA 58.752 55.000 0.00 0.00 44.20 2.15
1729 1754 1.203288 CCCCATGAGGAGCTCTAGGAT 60.203 57.143 14.64 0.00 38.24 3.24
1734 1759 3.160047 CGCCCCATGAGGAGCTCT 61.160 66.667 14.64 0.00 38.24 4.09
1947 1973 4.778143 GCCGATGCCACGTCCCTT 62.778 66.667 0.00 0.00 0.00 3.95
2104 2145 8.082242 GCAACAGATAGACACCAAAACTAAATT 58.918 33.333 0.00 0.00 0.00 1.82
2105 2146 7.230510 TGCAACAGATAGACACCAAAACTAAAT 59.769 33.333 0.00 0.00 0.00 1.40
2106 2147 6.544197 TGCAACAGATAGACACCAAAACTAAA 59.456 34.615 0.00 0.00 0.00 1.85
2107 2148 6.058833 TGCAACAGATAGACACCAAAACTAA 58.941 36.000 0.00 0.00 0.00 2.24
2108 2149 5.616270 TGCAACAGATAGACACCAAAACTA 58.384 37.500 0.00 0.00 0.00 2.24
2125 2166 2.163412 GGCCGACAGAAATAATGCAACA 59.837 45.455 0.00 0.00 0.00 3.33
2144 2185 7.137426 GTCAAATTGATGATCTGTAATCTGGC 58.863 38.462 0.00 0.00 0.00 4.85
2184 2225 4.915667 GGGATTGCTTTAAAAACTGTCGTC 59.084 41.667 0.00 0.00 0.00 4.20
2188 2229 5.453198 CCACTGGGATTGCTTTAAAAACTGT 60.453 40.000 0.00 0.00 35.59 3.55
2237 2278 5.234329 CAGAGTAATTGCCATACGTTCGATT 59.766 40.000 0.00 0.00 0.00 3.34
2263 2304 1.365699 CAGAAAATTGCCCATGCTGC 58.634 50.000 0.00 0.00 38.71 5.25
2338 2379 2.660189 AAATTGGCATGTGCTACTGC 57.340 45.000 4.84 0.00 41.70 4.40
2341 2382 5.894807 ACAGATAAAATTGGCATGTGCTAC 58.105 37.500 4.84 0.00 41.70 3.58
2347 2388 7.830940 TGCTAAAACAGATAAAATTGGCATG 57.169 32.000 0.00 0.00 33.43 4.06
2348 2389 7.496591 CCATGCTAAAACAGATAAAATTGGCAT 59.503 33.333 2.42 2.42 45.24 4.40
2351 2392 9.868277 TTACCATGCTAAAACAGATAAAATTGG 57.132 29.630 0.00 0.00 0.00 3.16
2432 2473 8.349983 GCCTTTCTAAAGTTTGATACAACTTCA 58.650 33.333 0.00 0.00 38.19 3.02
2443 2484 4.936891 AGCAGTTGCCTTTCTAAAGTTTG 58.063 39.130 0.00 0.00 43.38 2.93
2490 2533 5.359576 AGGTTTTGAAATGTGTAGTTGAGCA 59.640 36.000 0.00 0.00 0.00 4.26
2568 2611 7.621428 ACCTCAAGATGTGACATTTAGAATG 57.379 36.000 0.00 0.00 31.13 2.67
2709 2752 4.702131 CCCAAACTGAGACCTATCCAAAAG 59.298 45.833 0.00 0.00 0.00 2.27
2917 2970 9.915629 CTTCCTTGGTTCACTAGATGTATATAC 57.084 37.037 5.89 5.89 0.00 1.47
2920 2973 7.839705 AGTCTTCCTTGGTTCACTAGATGTATA 59.160 37.037 0.00 0.00 0.00 1.47
2925 2978 7.016268 TGTTTAGTCTTCCTTGGTTCACTAGAT 59.984 37.037 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.