Multiple sequence alignment - TraesCS4A01G265500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G265500 chr4A 100.000 7074 0 0 1 7074 577726666 577733739 0.000000e+00 13064.0
1 TraesCS4A01G265500 chr4A 89.495 495 40 3 2554 3043 353126976 353126489 3.630000e-172 616.0
2 TraesCS4A01G265500 chr4A 97.842 278 6 0 101 378 703765002 703764725 1.380000e-131 481.0
3 TraesCS4A01G265500 chr4A 97.842 278 6 0 101 378 729868843 729869120 1.380000e-131 481.0
4 TraesCS4A01G265500 chr4D 96.810 2069 55 7 4435 6497 467142827 467144890 0.000000e+00 3445.0
5 TraesCS4A01G265500 chr4D 95.633 893 30 5 3550 4440 467131167 467132052 0.000000e+00 1424.0
6 TraesCS4A01G265500 chr4D 93.565 575 35 2 6496 7069 25466804 25466231 0.000000e+00 856.0
7 TraesCS4A01G265500 chr4D 83.902 205 28 5 6489 6691 14630503 14630704 2.600000e-44 191.0
8 TraesCS4A01G265500 chr4B 94.281 1801 64 15 4705 6496 483086011 483084241 0.000000e+00 2719.0
9 TraesCS4A01G265500 chr4B 95.655 1680 58 7 1368 3043 483094554 483092886 0.000000e+00 2684.0
10 TraesCS4A01G265500 chr4B 96.128 1033 29 3 3682 4713 483092228 483091206 0.000000e+00 1676.0
11 TraesCS4A01G265500 chr4B 96.066 610 22 2 3048 3657 483092829 483092222 0.000000e+00 992.0
12 TraesCS4A01G265500 chr4B 93.836 584 30 5 6496 7074 37733420 37732838 0.000000e+00 874.0
13 TraesCS4A01G265500 chr4B 90.084 595 35 11 799 1375 483096750 483096162 0.000000e+00 750.0
14 TraesCS4A01G265500 chr4B 92.757 428 23 5 375 802 483098443 483098024 4.690000e-171 612.0
15 TraesCS4A01G265500 chr2A 91.030 1650 106 17 925 2548 733419061 733417428 0.000000e+00 2189.0
16 TraesCS4A01G265500 chr2A 86.874 419 51 2 3539 3953 427513846 427514264 3.860000e-127 466.0
17 TraesCS4A01G265500 chr5A 90.981 1652 105 19 925 2549 688481350 688482984 0.000000e+00 2185.0
18 TraesCS4A01G265500 chr5A 82.733 1222 133 34 5012 6222 590449246 590450400 0.000000e+00 1016.0
19 TraesCS4A01G265500 chr5A 97.842 278 6 0 101 378 139481468 139481191 1.380000e-131 481.0
20 TraesCS4A01G265500 chr5A 88.934 244 26 1 2554 2796 707711862 707712105 4.150000e-77 300.0
21 TraesCS4A01G265500 chr5A 85.629 167 23 1 6330 6496 353157375 353157210 2.620000e-39 174.0
22 TraesCS4A01G265500 chr6B 89.245 1655 103 38 925 2548 14635885 14634275 0.000000e+00 2001.0
23 TraesCS4A01G265500 chr6B 83.361 1208 126 35 5024 6222 662532 661391 0.000000e+00 1048.0
24 TraesCS4A01G265500 chr6B 81.323 862 121 28 1686 2511 552242858 552243715 0.000000e+00 664.0
25 TraesCS4A01G265500 chr6B 97.857 280 6 0 101 380 551770192 551769913 1.070000e-132 484.0
26 TraesCS4A01G265500 chr3A 89.021 1430 93 30 927 2333 538852868 538851480 0.000000e+00 1712.0
27 TraesCS4A01G265500 chr3A 87.402 254 29 2 6243 6496 137588722 137588972 8.980000e-74 289.0
28 TraesCS4A01G265500 chr3A 86.957 115 13 2 6335 6449 723441694 723441806 2.070000e-25 128.0
29 TraesCS4A01G265500 chr7D 83.265 1219 130 33 5012 6222 84431301 84432453 0.000000e+00 1053.0
30 TraesCS4A01G265500 chr7A 82.947 1208 129 36 5025 6222 437227450 437226310 0.000000e+00 1018.0
31 TraesCS4A01G265500 chr7A 86.509 593 54 10 4095 4685 284431368 284430800 4.660000e-176 628.0
32 TraesCS4A01G265500 chr7A 89.495 495 38 4 2554 3043 269093628 269093143 1.300000e-171 614.0
33 TraesCS4A01G265500 chr7A 97.842 278 6 0 101 378 4785041 4784764 1.380000e-131 481.0
34 TraesCS4A01G265500 chr7A 95.690 116 5 0 2747 2862 603588420 603588535 3.370000e-43 187.0
35 TraesCS4A01G265500 chr5B 87.863 791 70 15 4801 5585 702515181 702514411 0.000000e+00 905.0
36 TraesCS4A01G265500 chr5B 85.859 396 51 5 5575 5967 702514343 702513950 3.950000e-112 416.0
37 TraesCS4A01G265500 chr5B 94.915 59 3 0 4708 4766 702515242 702515184 7.560000e-15 93.5
38 TraesCS4A01G265500 chr6A 81.573 852 119 23 1686 2503 507091460 507092307 0.000000e+00 669.0
39 TraesCS4A01G265500 chr6A 80.636 346 40 15 5882 6222 18596714 18597037 7.090000e-60 243.0
40 TraesCS4A01G265500 chr6A 81.143 175 20 8 2722 2888 397207124 397207293 2.070000e-25 128.0
41 TraesCS4A01G265500 chr6D 79.774 885 112 35 1686 2511 366537438 366538314 1.320000e-161 580.0
42 TraesCS4A01G265500 chr6D 85.030 167 23 1 6331 6497 470744326 470744490 1.220000e-37 169.0
43 TraesCS4A01G265500 chr1A 87.727 440 45 4 3524 3955 465279199 465278761 8.190000e-139 505.0
44 TraesCS4A01G265500 chr1A 95.690 116 5 0 2747 2862 9591377 9591492 3.370000e-43 187.0
45 TraesCS4A01G265500 chr1A 82.320 181 22 5 5777 5950 477054985 477055162 1.590000e-31 148.0
46 TraesCS4A01G265500 chr3B 97.842 278 6 0 101 378 536901273 536900996 1.380000e-131 481.0
47 TraesCS4A01G265500 chr2B 97.842 278 6 0 101 378 24865943 24866220 1.380000e-131 481.0
48 TraesCS4A01G265500 chr1B 97.509 281 7 0 101 381 12757123 12756843 1.380000e-131 481.0
49 TraesCS4A01G265500 chr1B 96.259 294 9 2 101 393 588322691 588322399 1.380000e-131 481.0
50 TraesCS4A01G265500 chr2D 78.322 286 48 10 6215 6493 104912841 104913119 9.430000e-39 172.0
51 TraesCS4A01G265500 chr2D 78.113 265 43 11 6215 6472 89204023 89203767 3.420000e-33 154.0
52 TraesCS4A01G265500 chr2D 83.784 74 10 2 6423 6496 463923063 463923134 1.270000e-07 69.4
53 TraesCS4A01G265500 chr3D 93.103 116 8 0 2747 2862 458606055 458605940 3.390000e-38 171.0
54 TraesCS4A01G265500 chr5D 80.571 175 21 8 2722 2888 123804731 123804562 9.640000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G265500 chr4A 577726666 577733739 7073 False 13064.0 13064 100.000000 1 7074 1 chr4A.!!$F1 7073
1 TraesCS4A01G265500 chr4D 467142827 467144890 2063 False 3445.0 3445 96.810000 4435 6497 1 chr4D.!!$F3 2062
2 TraesCS4A01G265500 chr4D 467131167 467132052 885 False 1424.0 1424 95.633000 3550 4440 1 chr4D.!!$F2 890
3 TraesCS4A01G265500 chr4D 25466231 25466804 573 True 856.0 856 93.565000 6496 7069 1 chr4D.!!$R1 573
4 TraesCS4A01G265500 chr4B 483084241 483086011 1770 True 2719.0 2719 94.281000 4705 6496 1 chr4B.!!$R2 1791
5 TraesCS4A01G265500 chr4B 483091206 483098443 7237 True 1342.8 2684 94.138000 375 4713 5 chr4B.!!$R3 4338
6 TraesCS4A01G265500 chr4B 37732838 37733420 582 True 874.0 874 93.836000 6496 7074 1 chr4B.!!$R1 578
7 TraesCS4A01G265500 chr2A 733417428 733419061 1633 True 2189.0 2189 91.030000 925 2548 1 chr2A.!!$R1 1623
8 TraesCS4A01G265500 chr5A 688481350 688482984 1634 False 2185.0 2185 90.981000 925 2549 1 chr5A.!!$F2 1624
9 TraesCS4A01G265500 chr5A 590449246 590450400 1154 False 1016.0 1016 82.733000 5012 6222 1 chr5A.!!$F1 1210
10 TraesCS4A01G265500 chr6B 14634275 14635885 1610 True 2001.0 2001 89.245000 925 2548 1 chr6B.!!$R2 1623
11 TraesCS4A01G265500 chr6B 661391 662532 1141 True 1048.0 1048 83.361000 5024 6222 1 chr6B.!!$R1 1198
12 TraesCS4A01G265500 chr6B 552242858 552243715 857 False 664.0 664 81.323000 1686 2511 1 chr6B.!!$F1 825
13 TraesCS4A01G265500 chr3A 538851480 538852868 1388 True 1712.0 1712 89.021000 927 2333 1 chr3A.!!$R1 1406
14 TraesCS4A01G265500 chr7D 84431301 84432453 1152 False 1053.0 1053 83.265000 5012 6222 1 chr7D.!!$F1 1210
15 TraesCS4A01G265500 chr7A 437226310 437227450 1140 True 1018.0 1018 82.947000 5025 6222 1 chr7A.!!$R4 1197
16 TraesCS4A01G265500 chr7A 284430800 284431368 568 True 628.0 628 86.509000 4095 4685 1 chr7A.!!$R3 590
17 TraesCS4A01G265500 chr5B 702513950 702515242 1292 True 471.5 905 89.545667 4708 5967 3 chr5B.!!$R1 1259
18 TraesCS4A01G265500 chr6A 507091460 507092307 847 False 669.0 669 81.573000 1686 2503 1 chr6A.!!$F3 817
19 TraesCS4A01G265500 chr6D 366537438 366538314 876 False 580.0 580 79.774000 1686 2511 1 chr6D.!!$F1 825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.0 4.96 0.00 31.08 2.90 F
765 766 0.034089 GCCCTAAGGTTGATGGTGCT 60.034 55.0 0.00 0.00 34.57 4.40 F
1000 2296 0.260230 AGGGCGAGATGAAGAGAGGA 59.740 55.0 0.00 0.00 0.00 3.71 F
1514 4442 0.661187 TTTCGAGGTTCGTCCGTTCG 60.661 55.0 0.00 5.33 41.35 3.95 F
2571 5559 0.909610 TGCCATCTTCCTTCTCCCGT 60.910 55.0 0.00 0.00 0.00 5.28 F
3980 7020 0.254178 TGGAATGGAGCTTCCTCTGC 59.746 55.0 3.88 0.00 44.27 4.26 F
4051 7091 0.046242 ATCCCATTCCCAGTCCCAGA 59.954 55.0 0.00 0.00 0.00 3.86 F
4355 7398 1.059098 AGAACTGATGGCCACTGACA 58.941 50.0 8.16 5.53 0.00 3.58 F
4356 7399 1.160137 GAACTGATGGCCACTGACAC 58.840 55.0 8.16 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2118 5097 0.104671 GCAGCCAAAAGTTTCTGCCA 59.895 50.000 14.02 0.00 44.35 4.92 R
2746 5735 0.105778 GGGATAGGACTGCTGAGCAC 59.894 60.000 1.40 0.00 33.79 4.40 R
2753 5742 1.559682 TGAAGTTGGGGATAGGACTGC 59.440 52.381 0.00 0.00 0.00 4.40 R
3132 6172 1.747355 GCAAACCTCCATGACATCAGG 59.253 52.381 8.03 8.03 0.00 3.86 R
4032 7072 0.046242 TCTGGGACTGGGAATGGGAT 59.954 55.000 0.00 0.00 0.00 3.85 R
4811 7856 1.423541 ACTTGGGTCATGTGCCTGTTA 59.576 47.619 8.51 0.00 0.00 2.41 R
5835 8971 1.444672 CTCGATCAGCATGGAGGCA 59.555 57.895 0.00 0.00 36.16 4.75 R
5957 9094 2.993220 CAACATAGAACTACAGTGCGCA 59.007 45.455 5.66 5.66 0.00 6.09 R
6283 9423 4.196193 TGCTTAGGTGGTGGATTATTTCG 58.804 43.478 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.946784 ACGAGGATAACACTTTGATTGC 57.053 40.909 0.00 0.00 0.00 3.56
26 27 3.689649 ACGAGGATAACACTTTGATTGCC 59.310 43.478 0.00 0.00 0.00 4.52
27 28 3.689161 CGAGGATAACACTTTGATTGCCA 59.311 43.478 0.00 0.00 0.00 4.92
28 29 4.336433 CGAGGATAACACTTTGATTGCCAT 59.664 41.667 0.00 0.00 0.00 4.40
29 30 5.504665 CGAGGATAACACTTTGATTGCCATC 60.505 44.000 0.00 0.00 0.00 3.51
30 31 5.263599 AGGATAACACTTTGATTGCCATCA 58.736 37.500 0.00 0.00 37.67 3.07
31 32 5.126061 AGGATAACACTTTGATTGCCATCAC 59.874 40.000 0.00 0.00 39.28 3.06
32 33 2.995466 ACACTTTGATTGCCATCACG 57.005 45.000 0.00 0.00 39.28 4.35
33 34 1.541147 ACACTTTGATTGCCATCACGG 59.459 47.619 0.00 0.00 39.28 4.94
34 35 1.811965 CACTTTGATTGCCATCACGGA 59.188 47.619 0.00 0.00 39.28 4.69
35 36 2.424601 CACTTTGATTGCCATCACGGAT 59.575 45.455 0.00 0.00 39.28 4.18
36 37 2.684881 ACTTTGATTGCCATCACGGATC 59.315 45.455 0.00 0.00 39.28 3.36
37 38 2.715749 TTGATTGCCATCACGGATCT 57.284 45.000 0.00 0.00 39.28 2.75
38 39 2.715749 TGATTGCCATCACGGATCTT 57.284 45.000 0.00 0.00 34.22 2.40
39 40 3.003394 TGATTGCCATCACGGATCTTT 57.997 42.857 0.00 0.00 34.22 2.52
40 41 2.945008 TGATTGCCATCACGGATCTTTC 59.055 45.455 0.00 0.00 34.22 2.62
41 42 2.787473 TTGCCATCACGGATCTTTCT 57.213 45.000 0.00 0.00 36.56 2.52
42 43 2.028420 TGCCATCACGGATCTTTCTG 57.972 50.000 0.00 0.00 36.56 3.02
43 44 1.303309 GCCATCACGGATCTTTCTGG 58.697 55.000 0.00 0.00 36.56 3.86
44 45 1.959042 CCATCACGGATCTTTCTGGG 58.041 55.000 0.00 0.00 36.56 4.45
45 46 1.486310 CCATCACGGATCTTTCTGGGA 59.514 52.381 0.00 0.00 44.74 4.37
46 47 2.555199 CATCACGGATCTTTCTGGGAC 58.445 52.381 0.00 0.00 43.45 4.46
47 48 1.938585 TCACGGATCTTTCTGGGACT 58.061 50.000 0.00 0.00 35.67 3.85
48 49 1.550524 TCACGGATCTTTCTGGGACTG 59.449 52.381 0.00 0.00 35.67 3.51
49 50 0.250513 ACGGATCTTTCTGGGACTGC 59.749 55.000 0.00 0.00 32.05 4.40
50 51 0.250234 CGGATCTTTCTGGGACTGCA 59.750 55.000 0.00 0.00 0.00 4.41
51 52 1.743996 GGATCTTTCTGGGACTGCAC 58.256 55.000 0.00 0.00 0.00 4.57
52 53 1.680249 GGATCTTTCTGGGACTGCACC 60.680 57.143 0.00 0.00 0.00 5.01
60 61 3.307379 GGGACTGCACCCGAATATC 57.693 57.895 0.00 0.00 40.49 1.63
61 62 0.468226 GGGACTGCACCCGAATATCA 59.532 55.000 0.00 0.00 40.49 2.15
62 63 1.583054 GGACTGCACCCGAATATCAC 58.417 55.000 0.00 0.00 0.00 3.06
63 64 1.209128 GACTGCACCCGAATATCACG 58.791 55.000 0.00 0.00 0.00 4.35
74 75 4.533222 CCGAATATCACGGTTAATTTGCC 58.467 43.478 11.55 0.00 44.57 4.52
75 76 4.274950 CCGAATATCACGGTTAATTTGCCT 59.725 41.667 11.55 0.00 44.57 4.75
76 77 5.440685 CGAATATCACGGTTAATTTGCCTC 58.559 41.667 0.00 0.00 0.00 4.70
77 78 5.560183 CGAATATCACGGTTAATTTGCCTCC 60.560 44.000 0.00 0.00 0.00 4.30
78 79 2.871096 TCACGGTTAATTTGCCTCCT 57.129 45.000 0.00 0.00 0.00 3.69
79 80 3.149005 TCACGGTTAATTTGCCTCCTT 57.851 42.857 0.00 0.00 0.00 3.36
80 81 3.492337 TCACGGTTAATTTGCCTCCTTT 58.508 40.909 0.00 0.00 0.00 3.11
81 82 3.504520 TCACGGTTAATTTGCCTCCTTTC 59.495 43.478 0.00 0.00 0.00 2.62
82 83 2.823747 ACGGTTAATTTGCCTCCTTTCC 59.176 45.455 0.00 0.00 0.00 3.13
83 84 3.089284 CGGTTAATTTGCCTCCTTTCCT 58.911 45.455 0.00 0.00 0.00 3.36
84 85 4.263594 ACGGTTAATTTGCCTCCTTTCCTA 60.264 41.667 0.00 0.00 0.00 2.94
85 86 4.095932 CGGTTAATTTGCCTCCTTTCCTAC 59.904 45.833 0.00 0.00 0.00 3.18
86 87 4.401519 GGTTAATTTGCCTCCTTTCCTACC 59.598 45.833 0.00 0.00 0.00 3.18
87 88 3.825908 AATTTGCCTCCTTTCCTACCA 57.174 42.857 0.00 0.00 0.00 3.25
88 89 4.337264 AATTTGCCTCCTTTCCTACCAT 57.663 40.909 0.00 0.00 0.00 3.55
89 90 3.366052 TTTGCCTCCTTTCCTACCATC 57.634 47.619 0.00 0.00 0.00 3.51
90 91 1.213296 TGCCTCCTTTCCTACCATCC 58.787 55.000 0.00 0.00 0.00 3.51
91 92 1.213296 GCCTCCTTTCCTACCATCCA 58.787 55.000 0.00 0.00 0.00 3.41
92 93 1.564348 GCCTCCTTTCCTACCATCCAA 59.436 52.381 0.00 0.00 0.00 3.53
93 94 2.025321 GCCTCCTTTCCTACCATCCAAA 60.025 50.000 0.00 0.00 0.00 3.28
94 95 3.563479 GCCTCCTTTCCTACCATCCAAAA 60.563 47.826 0.00 0.00 0.00 2.44
95 96 4.017126 CCTCCTTTCCTACCATCCAAAAC 58.983 47.826 0.00 0.00 0.00 2.43
96 97 4.508405 CCTCCTTTCCTACCATCCAAAACA 60.508 45.833 0.00 0.00 0.00 2.83
97 98 5.068215 TCCTTTCCTACCATCCAAAACAA 57.932 39.130 0.00 0.00 0.00 2.83
98 99 5.650283 TCCTTTCCTACCATCCAAAACAAT 58.350 37.500 0.00 0.00 0.00 2.71
99 100 6.795590 TCCTTTCCTACCATCCAAAACAATA 58.204 36.000 0.00 0.00 0.00 1.90
100 101 7.242359 TCCTTTCCTACCATCCAAAACAATAA 58.758 34.615 0.00 0.00 0.00 1.40
101 102 7.396055 TCCTTTCCTACCATCCAAAACAATAAG 59.604 37.037 0.00 0.00 0.00 1.73
102 103 7.363793 CCTTTCCTACCATCCAAAACAATAAGG 60.364 40.741 0.00 0.00 0.00 2.69
103 104 6.147437 TCCTACCATCCAAAACAATAAGGT 57.853 37.500 0.00 0.00 0.00 3.50
104 105 5.949354 TCCTACCATCCAAAACAATAAGGTG 59.051 40.000 0.00 0.00 0.00 4.00
105 106 5.714806 CCTACCATCCAAAACAATAAGGTGT 59.285 40.000 0.00 0.00 0.00 4.16
106 107 5.467035 ACCATCCAAAACAATAAGGTGTG 57.533 39.130 0.00 0.00 0.00 3.82
107 108 4.244862 CCATCCAAAACAATAAGGTGTGC 58.755 43.478 0.00 0.00 0.00 4.57
108 109 4.262377 CCATCCAAAACAATAAGGTGTGCA 60.262 41.667 0.00 0.00 0.00 4.57
109 110 4.582701 TCCAAAACAATAAGGTGTGCAG 57.417 40.909 0.00 0.00 0.00 4.41
110 111 3.957497 TCCAAAACAATAAGGTGTGCAGT 59.043 39.130 0.00 0.00 0.00 4.40
111 112 4.050553 CCAAAACAATAAGGTGTGCAGTG 58.949 43.478 0.00 0.00 0.00 3.66
112 113 4.050553 CAAAACAATAAGGTGTGCAGTGG 58.949 43.478 0.00 0.00 0.00 4.00
113 114 2.656947 ACAATAAGGTGTGCAGTGGT 57.343 45.000 0.00 0.00 0.00 4.16
114 115 3.780804 ACAATAAGGTGTGCAGTGGTA 57.219 42.857 0.00 0.00 0.00 3.25
115 116 4.301072 ACAATAAGGTGTGCAGTGGTAT 57.699 40.909 0.00 0.00 0.00 2.73
116 117 4.261801 ACAATAAGGTGTGCAGTGGTATC 58.738 43.478 0.00 0.00 0.00 2.24
117 118 3.560636 ATAAGGTGTGCAGTGGTATCC 57.439 47.619 0.00 0.00 0.00 2.59
118 119 0.328258 AAGGTGTGCAGTGGTATCCC 59.672 55.000 0.00 0.00 0.00 3.85
119 120 1.077716 GGTGTGCAGTGGTATCCCC 60.078 63.158 0.00 0.00 0.00 4.81
120 121 1.682849 GTGTGCAGTGGTATCCCCA 59.317 57.895 0.00 0.00 42.51 4.96
127 128 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
128 129 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
129 130 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
130 131 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
146 147 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
147 148 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
148 149 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
149 150 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
150 151 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
151 152 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
152 153 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
153 154 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
154 155 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
155 156 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
156 157 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
157 158 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
158 159 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
159 160 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
160 161 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
161 162 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
162 163 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
163 164 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
164 165 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
165 166 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
166 167 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
167 168 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
168 169 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
169 170 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
170 171 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
171 172 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
172 173 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
173 174 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
181 182 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
182 183 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
183 184 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
184 185 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
185 186 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
186 187 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
187 188 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
188 189 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
199 200 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
200 201 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
201 202 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
202 203 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
203 204 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
204 205 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
205 206 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
206 207 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
207 208 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
208 209 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
209 210 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
210 211 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
233 234 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
236 237 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
238 239 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
241 242 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
242 243 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
243 244 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
244 245 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
245 246 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
246 247 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
247 248 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
248 249 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
249 250 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
250 251 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
251 252 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
252 253 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
253 254 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
254 255 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
255 256 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
256 257 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
257 258 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
258 259 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
259 260 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
260 261 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
261 262 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
262 263 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
263 264 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
264 265 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
265 266 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
266 267 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
267 268 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
268 269 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
269 270 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
270 271 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
271 272 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
272 273 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
273 274 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
274 275 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
275 276 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
276 277 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
277 278 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
278 279 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
279 280 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
280 281 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
281 282 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
282 283 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
283 284 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
284 285 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
285 286 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
286 287 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
287 288 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
288 289 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
289 290 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
290 291 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
291 292 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
292 293 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
293 294 0.468214 CTCGGAGGTGCTCATAGGGA 60.468 60.000 0.00 0.00 31.08 4.20
294 295 0.188587 TCGGAGGTGCTCATAGGGAT 59.811 55.000 0.00 0.00 31.08 3.85
295 296 1.427753 TCGGAGGTGCTCATAGGGATA 59.572 52.381 0.00 0.00 31.08 2.59
296 297 1.821753 CGGAGGTGCTCATAGGGATAG 59.178 57.143 0.00 0.00 31.08 2.08
297 298 2.183679 GGAGGTGCTCATAGGGATAGG 58.816 57.143 0.00 0.00 31.08 2.57
298 299 2.183679 GAGGTGCTCATAGGGATAGGG 58.816 57.143 0.00 0.00 0.00 3.53
299 300 1.509961 AGGTGCTCATAGGGATAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
300 301 1.625818 GGTGCTCATAGGGATAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
301 302 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
302 303 2.037772 GTGCTCATAGGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
303 304 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
304 305 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
305 306 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
306 307 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
307 308 1.682451 TAGGGATAGGGTGTGCGTGC 61.682 60.000 0.00 0.00 0.00 5.34
308 309 2.890474 GGATAGGGTGTGCGTGCG 60.890 66.667 0.00 0.00 0.00 5.34
309 310 2.125673 GATAGGGTGTGCGTGCGT 60.126 61.111 0.00 0.00 0.00 5.24
310 311 2.434185 ATAGGGTGTGCGTGCGTG 60.434 61.111 0.00 0.00 0.00 5.34
317 318 4.368808 GTGCGTGCGTGCGTTCAT 62.369 61.111 3.11 0.00 37.81 2.57
318 319 2.735100 TGCGTGCGTGCGTTCATA 60.735 55.556 3.11 0.00 37.81 2.15
319 320 2.020016 GCGTGCGTGCGTTCATAG 59.980 61.111 3.11 0.00 0.00 2.23
320 321 2.695055 CGTGCGTGCGTTCATAGG 59.305 61.111 0.00 0.00 0.00 2.57
321 322 2.798501 CGTGCGTGCGTTCATAGGG 61.799 63.158 0.00 0.00 0.00 3.53
322 323 1.447140 GTGCGTGCGTTCATAGGGA 60.447 57.895 0.00 0.00 0.00 4.20
323 324 0.810031 GTGCGTGCGTTCATAGGGAT 60.810 55.000 0.00 0.00 0.00 3.85
324 325 0.809636 TGCGTGCGTTCATAGGGATG 60.810 55.000 0.00 0.00 0.00 3.51
325 326 0.529773 GCGTGCGTTCATAGGGATGA 60.530 55.000 0.00 0.00 40.45 2.92
326 327 1.491670 CGTGCGTTCATAGGGATGAG 58.508 55.000 0.00 0.00 43.03 2.90
327 328 1.202417 CGTGCGTTCATAGGGATGAGT 60.202 52.381 0.00 0.00 43.03 3.41
328 329 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
329 330 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
330 331 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
331 332 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
332 333 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
333 334 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
334 335 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
335 336 2.029020 TCATAGGGATGAGTGTATGCGC 60.029 50.000 0.00 0.00 37.15 6.09
336 337 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
337 338 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
338 339 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
339 340 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
340 341 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
341 342 2.394708 GATGAGTGTATGCGCGTGTAT 58.605 47.619 13.61 4.63 0.00 2.29
342 343 3.561503 GATGAGTGTATGCGCGTGTATA 58.438 45.455 13.61 2.40 0.00 1.47
343 344 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
344 345 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
345 346 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
346 347 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
347 348 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
350 351 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
351 352 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
352 353 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
353 354 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
354 355 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
355 356 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
356 357 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
357 358 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
358 359 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
359 360 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
360 361 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
361 362 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
362 363 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
363 364 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
364 365 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
365 366 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
366 367 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
367 368 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
368 369 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
369 370 2.670414 GCTTGTGTCTGTACTGATGCTC 59.330 50.000 5.69 0.00 0.00 4.26
370 371 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
371 372 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
372 373 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
373 374 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
398 399 3.091545 ACAATAAGGTGTGCATCAAGGG 58.908 45.455 0.00 0.00 0.00 3.95
400 401 0.403655 TAAGGTGTGCATCAAGGGCA 59.596 50.000 0.00 0.00 39.32 5.36
408 409 0.322816 GCATCAAGGGCACTTCCTCA 60.323 55.000 0.00 0.00 35.80 3.86
410 411 2.022195 CATCAAGGGCACTTCCTCATG 58.978 52.381 0.00 0.00 35.80 3.07
468 469 0.531532 AATGGCGAGAGAGATTGGCG 60.532 55.000 0.00 0.00 31.79 5.69
491 492 1.747924 GGCCAATTGGAAAGAGCTCTC 59.252 52.381 29.02 5.46 37.39 3.20
535 536 1.595794 GACAAAACCTCGTTCGCTTCA 59.404 47.619 0.00 0.00 0.00 3.02
537 538 2.223377 ACAAAACCTCGTTCGCTTCATC 59.777 45.455 0.00 0.00 0.00 2.92
538 539 1.068474 AAACCTCGTTCGCTTCATCG 58.932 50.000 0.00 0.00 0.00 3.84
569 570 9.097257 GAGATAGGAAGAGAAATTTGACTTCAG 57.903 37.037 23.33 0.00 39.99 3.02
586 587 2.361737 GCCCCACCTCCTTTGCTC 60.362 66.667 0.00 0.00 0.00 4.26
635 636 1.280457 ATCCCACACAACCTCCTCTC 58.720 55.000 0.00 0.00 0.00 3.20
653 654 2.041265 CCCACTCCCCAGCTAGGT 59.959 66.667 0.00 0.00 34.66 3.08
654 655 1.616628 CCCACTCCCCAGCTAGGTT 60.617 63.158 0.00 0.00 34.66 3.50
655 656 1.604378 CCACTCCCCAGCTAGGTTG 59.396 63.158 0.00 0.00 34.66 3.77
656 657 1.078143 CACTCCCCAGCTAGGTTGC 60.078 63.158 0.00 0.00 34.66 4.17
657 658 1.229658 ACTCCCCAGCTAGGTTGCT 60.230 57.895 0.00 0.00 45.18 3.91
663 664 3.710722 AGCTAGGTTGCTGCCGCT 61.711 61.111 0.70 0.00 42.33 5.52
664 665 3.198489 GCTAGGTTGCTGCCGCTC 61.198 66.667 0.70 0.00 36.97 5.03
665 666 2.512515 CTAGGTTGCTGCCGCTCC 60.513 66.667 0.70 4.36 36.97 4.70
666 667 3.003173 TAGGTTGCTGCCGCTCCT 61.003 61.111 17.43 17.43 41.38 3.69
667 668 2.914777 CTAGGTTGCTGCCGCTCCTC 62.915 65.000 16.99 0.00 40.01 3.71
709 710 0.107752 CCTTTCCTCTCTCTGCCTGC 60.108 60.000 0.00 0.00 0.00 4.85
714 715 4.074526 TCTCTCTGCCTGCGGTGC 62.075 66.667 0.00 0.00 0.00 5.01
765 766 0.034089 GCCCTAAGGTTGATGGTGCT 60.034 55.000 0.00 0.00 34.57 4.40
766 767 1.755179 CCCTAAGGTTGATGGTGCTG 58.245 55.000 0.00 0.00 0.00 4.41
877 2155 3.986116 GAGAAGGGGAGGGGAGCGT 62.986 68.421 0.00 0.00 0.00 5.07
878 2156 3.787001 GAAGGGGAGGGGAGCGTG 61.787 72.222 0.00 0.00 0.00 5.34
892 2170 1.216710 GCGTGAGGTGAAGAGGAGG 59.783 63.158 0.00 0.00 0.00 4.30
950 2242 2.893215 CCATGGATATGGCCATCTGT 57.107 50.000 24.80 9.94 45.36 3.41
999 2295 0.673437 GAGGGCGAGATGAAGAGAGG 59.327 60.000 0.00 0.00 0.00 3.69
1000 2296 0.260230 AGGGCGAGATGAAGAGAGGA 59.740 55.000 0.00 0.00 0.00 3.71
1001 2297 1.133199 AGGGCGAGATGAAGAGAGGAT 60.133 52.381 0.00 0.00 0.00 3.24
1002 2298 1.000731 GGGCGAGATGAAGAGAGGATG 59.999 57.143 0.00 0.00 0.00 3.51
1003 2299 1.000731 GGCGAGATGAAGAGAGGATGG 59.999 57.143 0.00 0.00 0.00 3.51
1004 2300 1.959985 GCGAGATGAAGAGAGGATGGA 59.040 52.381 0.00 0.00 0.00 3.41
1007 2303 3.253188 CGAGATGAAGAGAGGATGGAGAC 59.747 52.174 0.00 0.00 0.00 3.36
1170 2476 8.739039 TGCTAATTTATTGTACATTGCTCTGTT 58.261 29.630 0.00 0.00 0.00 3.16
1508 4436 5.744490 TCATTTTTCTTTTCGAGGTTCGTC 58.256 37.500 0.00 0.00 41.35 4.20
1509 4437 4.541085 TTTTTCTTTTCGAGGTTCGTCC 57.459 40.909 0.00 0.00 41.35 4.79
1510 4438 1.774639 TTCTTTTCGAGGTTCGTCCG 58.225 50.000 0.00 0.00 41.35 4.79
1511 4439 0.670162 TCTTTTCGAGGTTCGTCCGT 59.330 50.000 0.00 0.00 41.35 4.69
1512 4440 1.067516 TCTTTTCGAGGTTCGTCCGTT 59.932 47.619 0.00 0.00 41.35 4.44
1513 4441 1.454653 CTTTTCGAGGTTCGTCCGTTC 59.545 52.381 0.00 0.00 41.35 3.95
1514 4442 0.661187 TTTCGAGGTTCGTCCGTTCG 60.661 55.000 0.00 5.33 41.35 3.95
1515 4443 1.785041 TTCGAGGTTCGTCCGTTCGT 61.785 55.000 0.00 0.00 41.35 3.85
1596 4524 6.799512 AGCTGCAATTTATTAATGTCACTCC 58.200 36.000 1.02 0.00 0.00 3.85
1701 4630 2.496899 ATTCTGAAGGGCGTCATGTT 57.503 45.000 0.00 0.00 0.00 2.71
1862 4819 7.595819 ATTCAAATTTTACCTGAGTCCACAA 57.404 32.000 0.00 0.00 0.00 3.33
1870 4827 3.878778 ACCTGAGTCCACAATTGATAGC 58.121 45.455 13.59 0.00 0.00 2.97
1915 4872 6.415702 TGTAAAGTTGAGACGTTCAATTTCG 58.584 36.000 15.79 0.00 46.85 3.46
2178 5157 2.371841 ACTGCCCATGTCACTCAAACTA 59.628 45.455 0.00 0.00 0.00 2.24
2185 5164 5.248640 CCATGTCACTCAAACTATGTTCCT 58.751 41.667 0.00 0.00 0.00 3.36
2201 5181 3.513912 TGTTCCTGGTCAGTCGTATGAAT 59.486 43.478 0.00 0.00 0.00 2.57
2241 5221 5.255397 TCTGGTAATTGGTGGTTTCTCAT 57.745 39.130 0.00 0.00 0.00 2.90
2417 5403 3.671702 GCCTTGCTAGCTCAATTGTTGAC 60.672 47.826 17.23 0.00 35.46 3.18
2503 5491 5.048782 AGCTCGAGCAAAACAAATAATGTGA 60.049 36.000 36.87 0.00 42.38 3.58
2545 5533 5.754406 TGTTGAATCTTTGCTCCATGTTTTG 59.246 36.000 0.00 0.00 0.00 2.44
2571 5559 0.909610 TGCCATCTTCCTTCTCCCGT 60.910 55.000 0.00 0.00 0.00 5.28
2592 5580 4.143639 CGTTATGCATCCGTTGTTTGTTTG 60.144 41.667 0.19 0.00 0.00 2.93
2648 5636 1.064825 AAGGAGGTTGTGTAGTGGGG 58.935 55.000 0.00 0.00 0.00 4.96
2654 5642 1.564348 GGTTGTGTAGTGGGGATGGAT 59.436 52.381 0.00 0.00 0.00 3.41
2673 5662 4.782691 TGGATATCTGGTGTTGGAAGAAGA 59.217 41.667 2.05 0.00 0.00 2.87
2718 5707 7.051623 TCTAGGTATTATCGTTTGGCATGTTT 58.948 34.615 0.00 0.00 0.00 2.83
2753 5742 5.515270 CACATTTGCAAATAGATGTGCTCAG 59.485 40.000 23.69 9.79 41.75 3.35
2766 5755 1.050988 TGCTCAGCAGTCCTATCCCC 61.051 60.000 0.00 0.00 33.32 4.81
2807 5796 3.963665 TGTTAAGTTCATGCAGCAACAC 58.036 40.909 0.00 0.00 0.00 3.32
2816 5805 4.496360 TCATGCAGCAACACAAATATTGG 58.504 39.130 0.00 0.00 34.12 3.16
2878 5867 6.408035 TGGTTGGTATATTTCTCGCAGTTTA 58.592 36.000 0.00 0.00 0.00 2.01
2890 5879 2.101750 TCGCAGTTTAGGAACACAGTGA 59.898 45.455 7.81 0.00 38.26 3.41
3043 6032 5.477510 TGAATGGTTCATTGTAATTGTGCC 58.522 37.500 0.00 0.00 33.90 5.01
3044 6033 5.245751 TGAATGGTTCATTGTAATTGTGCCT 59.754 36.000 0.00 0.00 33.90 4.75
3045 6034 4.517952 TGGTTCATTGTAATTGTGCCTG 57.482 40.909 0.00 0.00 0.00 4.85
3046 6035 3.253230 GGTTCATTGTAATTGTGCCTGC 58.747 45.455 0.00 0.00 0.00 4.85
3048 6037 3.853831 TCATTGTAATTGTGCCTGCTG 57.146 42.857 0.00 0.00 0.00 4.41
3050 6039 3.191162 TCATTGTAATTGTGCCTGCTGTC 59.809 43.478 0.00 0.00 0.00 3.51
3051 6040 2.268762 TGTAATTGTGCCTGCTGTCA 57.731 45.000 0.00 0.00 0.00 3.58
3086 6126 5.069781 ACAACCTTTTGTATTTTGCCTGCTA 59.930 36.000 0.00 0.00 44.53 3.49
3132 6172 2.428530 GGGAGATGAATTGGGCAGAAAC 59.571 50.000 0.00 0.00 0.00 2.78
3161 6201 0.321564 TGGAGGTTTGCTCATGACCG 60.322 55.000 0.00 0.00 38.48 4.79
3218 6258 6.732531 TCTTGAGCATGAGTCTGTATTTTG 57.267 37.500 0.00 0.00 0.00 2.44
3238 6278 8.687824 ATTTTGTTTCCTTATTCAACATAGCG 57.312 30.769 0.00 0.00 30.64 4.26
3239 6279 5.811399 TGTTTCCTTATTCAACATAGCGG 57.189 39.130 0.00 0.00 0.00 5.52
3242 6282 4.746535 TCCTTATTCAACATAGCGGTGA 57.253 40.909 0.00 0.00 0.00 4.02
3344 6384 5.655488 ACTGCATATCTATTCCATACTCGC 58.345 41.667 0.00 0.00 0.00 5.03
3348 6388 2.991434 TCTATTCCATACTCGCGAGC 57.009 50.000 34.83 0.00 0.00 5.03
3361 6401 1.845809 CGCGAGCAAAAGCTCTGGTT 61.846 55.000 14.67 0.00 34.91 3.67
3455 6495 4.468153 TGCTGGTGTGGTATATAACTGTGA 59.532 41.667 0.00 0.00 0.00 3.58
3460 6500 6.612049 TGGTGTGGTATATAACTGTGATGGTA 59.388 38.462 0.00 0.00 0.00 3.25
3533 6573 1.459450 TTTATTTGCTGGAGGCGACC 58.541 50.000 0.00 0.00 45.43 4.79
3609 6649 1.103803 CGGATTCAGACGAGGAAGGA 58.896 55.000 0.00 0.00 0.00 3.36
3613 6653 1.166129 TTCAGACGAGGAAGGAGACG 58.834 55.000 0.00 0.00 0.00 4.18
3617 6657 3.441290 CGAGGAAGGAGACGCCGT 61.441 66.667 0.00 0.00 43.43 5.68
3627 6667 3.857854 GACGCCGTCGACGAGCTA 61.858 66.667 37.65 0.00 43.02 3.32
3705 6745 0.742505 TTCAGGTACTATGGTCCGCG 59.257 55.000 0.00 0.00 36.02 6.46
3800 6840 1.661463 ATGAGCTTTGGGAGAGTCCA 58.339 50.000 0.00 0.00 38.64 4.02
3839 6879 6.642430 AGATGATCAAAAAGAGTCCAGAGAG 58.358 40.000 0.00 0.00 0.00 3.20
3840 6880 5.815233 TGATCAAAAAGAGTCCAGAGAGT 57.185 39.130 0.00 0.00 0.00 3.24
3965 7005 4.805140 TCCCATAATTAGCACCATGGAA 57.195 40.909 21.47 1.63 40.37 3.53
3980 7020 0.254178 TGGAATGGAGCTTCCTCTGC 59.746 55.000 3.88 0.00 44.27 4.26
3981 7021 0.545646 GGAATGGAGCTTCCTCTGCT 59.454 55.000 0.00 0.00 41.32 4.24
4032 7072 0.392998 GCTGATCCTTTCGCCTCCAA 60.393 55.000 0.00 0.00 0.00 3.53
4051 7091 0.046242 ATCCCATTCCCAGTCCCAGA 59.954 55.000 0.00 0.00 0.00 3.86
4059 7099 1.839994 TCCCAGTCCCAGAATAAGCAG 59.160 52.381 0.00 0.00 0.00 4.24
4062 7102 2.286872 CAGTCCCAGAATAAGCAGCAG 58.713 52.381 0.00 0.00 0.00 4.24
4109 7149 8.475639 TCTTTTTATCCTGGTACTGTATCTCAC 58.524 37.037 0.00 0.00 0.00 3.51
4351 7394 1.279271 GTGGTAGAACTGATGGCCACT 59.721 52.381 8.16 1.00 42.04 4.00
4352 7395 1.278985 TGGTAGAACTGATGGCCACTG 59.721 52.381 8.16 9.11 0.00 3.66
4353 7396 1.555075 GGTAGAACTGATGGCCACTGA 59.445 52.381 8.16 0.00 0.00 3.41
4354 7397 2.622436 GTAGAACTGATGGCCACTGAC 58.378 52.381 8.16 0.08 0.00 3.51
4355 7398 1.059098 AGAACTGATGGCCACTGACA 58.941 50.000 8.16 5.53 0.00 3.58
4356 7399 1.160137 GAACTGATGGCCACTGACAC 58.840 55.000 8.16 0.00 0.00 3.67
4535 7578 2.378038 ACTGTTTCTTTTGCAGCCAGA 58.622 42.857 0.00 0.00 33.87 3.86
4986 8032 7.176165 TCTCCTACATAACCATACTACATTCCG 59.824 40.741 0.00 0.00 0.00 4.30
5089 8136 6.127925 CCGAGAATTTCATTTTCATCCACTGA 60.128 38.462 0.00 0.00 0.00 3.41
5099 8146 7.550551 TCATTTTCATCCACTGAACTGTATCTC 59.449 37.037 0.00 0.00 43.54 2.75
5234 8282 5.710984 ACAGTAGATCCACGAACTTTGTAG 58.289 41.667 0.00 0.00 0.00 2.74
5235 8283 4.563184 CAGTAGATCCACGAACTTTGTAGC 59.437 45.833 0.00 0.00 0.00 3.58
5252 8300 7.872483 ACTTTGTAGCCCTTAAAAATGTGAATG 59.128 33.333 0.00 0.00 0.00 2.67
5683 8817 7.282332 AGTGCAATCTTCTTTTCTTTAGCTT 57.718 32.000 0.00 0.00 0.00 3.74
5705 8840 6.257630 GCTTTGCTTTTCCATTTAACTTCACA 59.742 34.615 0.00 0.00 0.00 3.58
5756 8891 2.843113 AGCATCCTCCTCTGTTTAGCTT 59.157 45.455 0.00 0.00 0.00 3.74
5957 9094 9.618890 AGTGTAGCTACATGATCAAATTTGTAT 57.381 29.630 28.37 9.89 38.63 2.29
6084 9222 9.956720 CAGAAAAGAGAAGTGAAAATGTGTATT 57.043 29.630 0.00 0.00 0.00 1.89
6183 9323 3.068590 CCTGACCACAAAAGCAAGTGAAT 59.931 43.478 0.00 0.00 37.97 2.57
6222 9362 2.202623 CCGCCGAAGTTCCTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
6241 9381 9.331282 TCCTCTCGGTACTACTATAAAACTTAC 57.669 37.037 0.00 0.00 0.00 2.34
6285 9425 7.100409 TGTTGAATGTGTATAATCTGGTTCGA 58.900 34.615 0.00 0.00 0.00 3.71
6310 9450 1.951209 TCCACCACCTAAGCAGATCA 58.049 50.000 0.00 0.00 0.00 2.92
6311 9451 2.265367 TCCACCACCTAAGCAGATCAA 58.735 47.619 0.00 0.00 0.00 2.57
6349 9489 9.979578 AATATTGTTGCTTGTTTTGTTATCAGA 57.020 25.926 0.00 0.00 0.00 3.27
6420 9560 9.996554 AAACAATTAAAGAATAAAAGGGGTGAG 57.003 29.630 0.00 0.00 0.00 3.51
6428 9568 2.125766 AAAAGGGGTGAGAGGGTCGC 62.126 60.000 0.00 0.00 34.63 5.19
6448 9588 1.514678 TTGTCAATCTGGCACCGCAC 61.515 55.000 0.00 0.00 28.02 5.34
6455 9595 0.749649 TCTGGCACCGCACAAAATTT 59.250 45.000 0.00 0.00 0.00 1.82
6463 9603 4.320202 GCACCGCACAAAATTTCTCTTAGA 60.320 41.667 0.00 0.00 0.00 2.10
6527 9667 1.893808 CACCGCAACAAGCTCTGGT 60.894 57.895 0.00 0.00 42.61 4.00
6616 9756 2.567169 TGTCCTGGACGATGAACAAGAT 59.433 45.455 21.15 0.00 34.95 2.40
6619 9759 5.175859 GTCCTGGACGATGAACAAGATAAA 58.824 41.667 11.71 0.00 0.00 1.40
6649 9790 7.727578 TCAAATAAGTCATGAGTACCCAGTA 57.272 36.000 2.79 0.00 0.00 2.74
6660 9801 3.446968 AGTACCCAGTACTTGCCATACA 58.553 45.455 1.56 0.00 45.68 2.29
6692 9833 4.319177 GGCTACACTTGAACAGAAGATGT 58.681 43.478 0.00 0.00 46.97 3.06
6745 9886 2.237143 TGTCTTGCTTCTATCAGGGTGG 59.763 50.000 0.00 0.00 0.00 4.61
6792 9933 1.607148 CACCCGATCACGATACTAGCA 59.393 52.381 0.00 0.00 42.66 3.49
6808 9949 1.289160 AGCACCCTCATAGAAAGCCA 58.711 50.000 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.527582 GGCAATCAAAGTGTTATCCTCGTAT 59.472 40.000 0.00 0.00 0.00 3.06
3 4 4.873827 GGCAATCAAAGTGTTATCCTCGTA 59.126 41.667 0.00 0.00 0.00 3.43
4 5 3.689649 GGCAATCAAAGTGTTATCCTCGT 59.310 43.478 0.00 0.00 0.00 4.18
5 6 3.689161 TGGCAATCAAAGTGTTATCCTCG 59.311 43.478 0.00 0.00 0.00 4.63
6 7 5.357878 TGATGGCAATCAAAGTGTTATCCTC 59.642 40.000 0.00 0.00 39.92 3.71
7 8 5.126061 GTGATGGCAATCAAAGTGTTATCCT 59.874 40.000 5.02 0.00 44.40 3.24
8 9 5.343249 GTGATGGCAATCAAAGTGTTATCC 58.657 41.667 5.02 0.00 44.40 2.59
9 10 5.030295 CGTGATGGCAATCAAAGTGTTATC 58.970 41.667 5.02 0.00 44.40 1.75
10 11 4.142403 CCGTGATGGCAATCAAAGTGTTAT 60.142 41.667 5.02 0.00 44.40 1.89
11 12 3.190327 CCGTGATGGCAATCAAAGTGTTA 59.810 43.478 5.02 0.00 44.40 2.41
12 13 2.030007 CCGTGATGGCAATCAAAGTGTT 60.030 45.455 5.02 0.00 44.40 3.32
13 14 1.541147 CCGTGATGGCAATCAAAGTGT 59.459 47.619 5.02 0.00 44.40 3.55
14 15 1.811965 TCCGTGATGGCAATCAAAGTG 59.188 47.619 5.02 0.00 44.40 3.16
15 16 2.198827 TCCGTGATGGCAATCAAAGT 57.801 45.000 5.02 0.00 44.40 2.66
16 17 2.947652 AGATCCGTGATGGCAATCAAAG 59.052 45.455 5.02 3.07 44.40 2.77
17 18 3.003394 AGATCCGTGATGGCAATCAAA 57.997 42.857 5.02 0.00 44.40 2.69
18 19 2.715749 AGATCCGTGATGGCAATCAA 57.284 45.000 5.02 0.00 44.40 2.57
19 20 2.715749 AAGATCCGTGATGGCAATCA 57.284 45.000 0.00 0.00 40.61 2.57
20 21 3.003068 CAGAAAGATCCGTGATGGCAATC 59.997 47.826 0.00 0.00 37.80 2.67
21 22 2.947652 CAGAAAGATCCGTGATGGCAAT 59.052 45.455 0.00 0.00 37.80 3.56
22 23 2.358957 CAGAAAGATCCGTGATGGCAA 58.641 47.619 0.00 0.00 37.80 4.52
23 24 1.407299 CCAGAAAGATCCGTGATGGCA 60.407 52.381 0.00 0.00 37.80 4.92
24 25 1.303309 CCAGAAAGATCCGTGATGGC 58.697 55.000 0.00 0.00 37.80 4.40
25 26 1.486310 TCCCAGAAAGATCCGTGATGG 59.514 52.381 0.00 0.00 40.09 3.51
26 27 2.169352 AGTCCCAGAAAGATCCGTGATG 59.831 50.000 0.00 0.00 0.00 3.07
27 28 2.169352 CAGTCCCAGAAAGATCCGTGAT 59.831 50.000 0.00 0.00 0.00 3.06
28 29 1.550524 CAGTCCCAGAAAGATCCGTGA 59.449 52.381 0.00 0.00 0.00 4.35
29 30 2.009042 GCAGTCCCAGAAAGATCCGTG 61.009 57.143 0.00 0.00 0.00 4.94
30 31 0.250513 GCAGTCCCAGAAAGATCCGT 59.749 55.000 0.00 0.00 0.00 4.69
31 32 0.250234 TGCAGTCCCAGAAAGATCCG 59.750 55.000 0.00 0.00 0.00 4.18
32 33 1.680249 GGTGCAGTCCCAGAAAGATCC 60.680 57.143 0.00 0.00 0.00 3.36
33 34 1.680249 GGGTGCAGTCCCAGAAAGATC 60.680 57.143 7.52 0.00 46.30 2.75
34 35 0.329596 GGGTGCAGTCCCAGAAAGAT 59.670 55.000 7.52 0.00 46.30 2.40
35 36 1.761174 GGGTGCAGTCCCAGAAAGA 59.239 57.895 7.52 0.00 46.30 2.52
36 37 4.404691 GGGTGCAGTCCCAGAAAG 57.595 61.111 7.52 0.00 46.30 2.62
42 43 0.468226 TGATATTCGGGTGCAGTCCC 59.532 55.000 2.13 2.13 43.78 4.46
43 44 1.583054 GTGATATTCGGGTGCAGTCC 58.417 55.000 0.00 0.00 0.00 3.85
44 45 1.209128 CGTGATATTCGGGTGCAGTC 58.791 55.000 0.00 0.00 0.00 3.51
45 46 0.179084 CCGTGATATTCGGGTGCAGT 60.179 55.000 11.00 0.00 43.68 4.40
46 47 2.605094 CCGTGATATTCGGGTGCAG 58.395 57.895 11.00 0.00 43.68 4.41
47 48 4.846551 CCGTGATATTCGGGTGCA 57.153 55.556 11.00 0.00 43.68 4.57
53 54 5.418310 AGGCAAATTAACCGTGATATTCG 57.582 39.130 0.00 0.00 0.00 3.34
54 55 5.531287 AGGAGGCAAATTAACCGTGATATTC 59.469 40.000 0.00 0.00 0.00 1.75
55 56 5.445964 AGGAGGCAAATTAACCGTGATATT 58.554 37.500 0.00 0.00 0.00 1.28
56 57 5.048846 AGGAGGCAAATTAACCGTGATAT 57.951 39.130 0.00 0.00 0.00 1.63
57 58 4.497291 AGGAGGCAAATTAACCGTGATA 57.503 40.909 0.00 0.00 0.00 2.15
58 59 3.366052 AGGAGGCAAATTAACCGTGAT 57.634 42.857 0.00 0.00 0.00 3.06
59 60 2.871096 AGGAGGCAAATTAACCGTGA 57.129 45.000 0.00 0.00 0.00 4.35
60 61 3.366985 GGAAAGGAGGCAAATTAACCGTG 60.367 47.826 0.00 0.00 0.00 4.94
61 62 2.823747 GGAAAGGAGGCAAATTAACCGT 59.176 45.455 0.00 0.00 0.00 4.83
62 63 3.089284 AGGAAAGGAGGCAAATTAACCG 58.911 45.455 0.00 0.00 0.00 4.44
63 64 4.401519 GGTAGGAAAGGAGGCAAATTAACC 59.598 45.833 0.00 0.00 0.00 2.85
64 65 5.014202 TGGTAGGAAAGGAGGCAAATTAAC 58.986 41.667 0.00 0.00 0.00 2.01
65 66 5.263872 TGGTAGGAAAGGAGGCAAATTAA 57.736 39.130 0.00 0.00 0.00 1.40
66 67 4.938575 TGGTAGGAAAGGAGGCAAATTA 57.061 40.909 0.00 0.00 0.00 1.40
67 68 3.825908 TGGTAGGAAAGGAGGCAAATT 57.174 42.857 0.00 0.00 0.00 1.82
68 69 3.373110 GGATGGTAGGAAAGGAGGCAAAT 60.373 47.826 0.00 0.00 0.00 2.32
69 70 2.025321 GGATGGTAGGAAAGGAGGCAAA 60.025 50.000 0.00 0.00 0.00 3.68
70 71 1.564348 GGATGGTAGGAAAGGAGGCAA 59.436 52.381 0.00 0.00 0.00 4.52
71 72 1.213296 GGATGGTAGGAAAGGAGGCA 58.787 55.000 0.00 0.00 0.00 4.75
72 73 1.213296 TGGATGGTAGGAAAGGAGGC 58.787 55.000 0.00 0.00 0.00 4.70
73 74 4.017126 GTTTTGGATGGTAGGAAAGGAGG 58.983 47.826 0.00 0.00 0.00 4.30
74 75 4.662278 TGTTTTGGATGGTAGGAAAGGAG 58.338 43.478 0.00 0.00 0.00 3.69
75 76 4.733077 TGTTTTGGATGGTAGGAAAGGA 57.267 40.909 0.00 0.00 0.00 3.36
76 77 7.363793 CCTTATTGTTTTGGATGGTAGGAAAGG 60.364 40.741 0.00 0.00 0.00 3.11
77 78 7.178451 ACCTTATTGTTTTGGATGGTAGGAAAG 59.822 37.037 0.00 0.00 0.00 2.62
78 79 7.013834 ACCTTATTGTTTTGGATGGTAGGAAA 58.986 34.615 0.00 0.00 0.00 3.13
79 80 6.435904 CACCTTATTGTTTTGGATGGTAGGAA 59.564 38.462 0.00 0.00 0.00 3.36
80 81 5.949354 CACCTTATTGTTTTGGATGGTAGGA 59.051 40.000 0.00 0.00 0.00 2.94
81 82 5.714806 ACACCTTATTGTTTTGGATGGTAGG 59.285 40.000 0.00 0.00 0.00 3.18
82 83 6.620678 CACACCTTATTGTTTTGGATGGTAG 58.379 40.000 0.00 0.00 0.00 3.18
83 84 5.047660 GCACACCTTATTGTTTTGGATGGTA 60.048 40.000 0.00 0.00 0.00 3.25
84 85 4.262420 GCACACCTTATTGTTTTGGATGGT 60.262 41.667 0.00 0.00 0.00 3.55
85 86 4.244862 GCACACCTTATTGTTTTGGATGG 58.755 43.478 0.00 0.00 0.00 3.51
86 87 4.880759 TGCACACCTTATTGTTTTGGATG 58.119 39.130 0.00 0.00 0.00 3.51
87 88 4.588528 ACTGCACACCTTATTGTTTTGGAT 59.411 37.500 0.00 0.00 0.00 3.41
88 89 3.957497 ACTGCACACCTTATTGTTTTGGA 59.043 39.130 0.00 0.00 0.00 3.53
89 90 4.050553 CACTGCACACCTTATTGTTTTGG 58.949 43.478 0.00 0.00 0.00 3.28
90 91 4.050553 CCACTGCACACCTTATTGTTTTG 58.949 43.478 0.00 0.00 0.00 2.44
91 92 3.704061 ACCACTGCACACCTTATTGTTTT 59.296 39.130 0.00 0.00 0.00 2.43
92 93 3.295973 ACCACTGCACACCTTATTGTTT 58.704 40.909 0.00 0.00 0.00 2.83
93 94 2.944129 ACCACTGCACACCTTATTGTT 58.056 42.857 0.00 0.00 0.00 2.83
94 95 2.656947 ACCACTGCACACCTTATTGT 57.343 45.000 0.00 0.00 0.00 2.71
95 96 3.627577 GGATACCACTGCACACCTTATTG 59.372 47.826 0.00 0.00 0.00 1.90
96 97 3.886123 GGATACCACTGCACACCTTATT 58.114 45.455 0.00 0.00 0.00 1.40
97 98 3.560636 GGATACCACTGCACACCTTAT 57.439 47.619 0.00 0.00 0.00 1.73
99 100 3.957288 GGATACCACTGCACACCTT 57.043 52.632 0.00 0.00 0.00 3.50
112 113 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
113 114 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
123 124 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
128 129 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
129 130 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
130 131 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
131 132 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
132 133 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
133 134 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
134 135 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
135 136 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
136 137 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
137 138 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
138 139 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
139 140 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
140 141 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
141 142 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
142 143 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
143 144 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
144 145 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
145 146 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
146 147 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
147 148 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
157 158 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
158 159 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
159 160 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
160 161 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
161 162 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
162 163 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
163 164 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
164 165 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
165 166 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
166 167 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
167 168 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
168 169 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
169 170 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
170 171 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
171 172 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
182 183 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
183 184 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
184 185 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
185 186 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
186 187 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
187 188 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
188 189 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
189 190 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
190 191 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
191 192 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
192 193 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
193 194 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
194 195 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
215 216 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
216 217 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
229 230 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
230 231 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
231 232 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
232 233 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
233 234 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
234 235 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
235 236 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
236 237 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
237 238 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
238 239 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
239 240 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
240 241 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
241 242 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
242 243 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
243 244 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
244 245 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
245 246 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
246 247 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
247 248 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
248 249 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
249 250 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
250 251 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
251 252 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
252 253 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
253 254 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
254 255 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
255 256 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
256 257 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
257 258 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
258 259 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
259 260 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
260 261 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
261 262 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
262 263 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
263 264 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
264 265 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
265 266 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
266 267 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
267 268 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
268 269 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
269 270 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
270 271 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
271 272 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
272 273 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
273 274 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
274 275 0.468214 TCCCTATGAGCACCTCCGAG 60.468 60.000 0.00 0.00 0.00 4.63
275 276 0.188587 ATCCCTATGAGCACCTCCGA 59.811 55.000 0.00 0.00 0.00 4.55
276 277 1.821753 CTATCCCTATGAGCACCTCCG 59.178 57.143 0.00 0.00 0.00 4.63
277 278 2.183679 CCTATCCCTATGAGCACCTCC 58.816 57.143 0.00 0.00 0.00 4.30
278 279 2.183679 CCCTATCCCTATGAGCACCTC 58.816 57.143 0.00 0.00 0.00 3.85
279 280 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
280 281 1.625818 CACCCTATCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
281 282 2.037772 CACACCCTATCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
282 283 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
283 284 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
284 285 1.273606 CGCACACCCTATCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
285 286 1.338107 CGCACACCCTATCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
286 287 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
287 288 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
288 289 1.682451 GCACGCACACCCTATCCCTA 61.682 60.000 0.00 0.00 0.00 3.53
289 290 3.031417 GCACGCACACCCTATCCCT 62.031 63.158 0.00 0.00 0.00 4.20
290 291 2.513897 GCACGCACACCCTATCCC 60.514 66.667 0.00 0.00 0.00 3.85
291 292 2.890474 CGCACGCACACCCTATCC 60.890 66.667 0.00 0.00 0.00 2.59
292 293 2.125673 ACGCACGCACACCCTATC 60.126 61.111 0.00 0.00 0.00 2.08
293 294 2.434185 CACGCACGCACACCCTAT 60.434 61.111 0.00 0.00 0.00 2.57
300 301 2.863655 CTATGAACGCACGCACGCAC 62.864 60.000 0.00 0.00 36.19 5.34
301 302 2.725699 CTATGAACGCACGCACGCA 61.726 57.895 0.00 0.00 36.19 5.24
302 303 2.020016 CTATGAACGCACGCACGC 59.980 61.111 0.00 0.00 36.19 5.34
303 304 2.695055 CCTATGAACGCACGCACG 59.305 61.111 0.00 0.00 39.50 5.34
304 305 0.810031 ATCCCTATGAACGCACGCAC 60.810 55.000 0.00 0.00 0.00 5.34
305 306 0.809636 CATCCCTATGAACGCACGCA 60.810 55.000 0.00 0.00 34.84 5.24
306 307 0.529773 TCATCCCTATGAACGCACGC 60.530 55.000 0.00 0.00 39.20 5.34
307 308 1.202417 ACTCATCCCTATGAACGCACG 60.202 52.381 0.00 0.00 41.57 5.34
308 309 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
309 310 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
310 311 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
311 312 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
312 313 3.990469 CGCATACACTCATCCCTATGAAC 59.010 47.826 0.00 0.00 41.57 3.18
313 314 3.554960 GCGCATACACTCATCCCTATGAA 60.555 47.826 0.30 0.00 41.57 2.57
314 315 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
315 316 2.341257 GCGCATACACTCATCCCTATG 58.659 52.381 0.30 0.00 0.00 2.23
316 317 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
317 318 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
318 319 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
319 320 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
320 321 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
321 322 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
322 323 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
323 324 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
324 325 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
325 326 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
326 327 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
327 328 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
328 329 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
329 330 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
330 331 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
331 332 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
335 336 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
336 337 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
337 338 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
338 339 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
339 340 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
340 341 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
341 342 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
342 343 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
343 344 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
344 345 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
345 346 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
346 347 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
347 348 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
348 349 2.670414 GAGCATCAGTACAGACACAAGC 59.330 50.000 0.00 0.00 33.17 4.01
349 350 3.917988 TGAGCATCAGTACAGACACAAG 58.082 45.455 0.00 0.00 42.56 3.16
373 374 5.990996 CCTTGATGCACACCTTATTGTTTTT 59.009 36.000 0.00 0.00 0.00 1.94
398 399 1.896220 TGGAACACATGAGGAAGTGC 58.104 50.000 0.00 0.00 39.30 4.40
468 469 0.108472 GCTCTTTCCAATTGGCCAGC 60.108 55.000 20.33 17.83 34.44 4.85
535 536 3.745799 TCTCTTCCTATCTCTTCGCGAT 58.254 45.455 10.88 0.00 0.00 4.58
537 538 3.972950 TTCTCTTCCTATCTCTTCGCG 57.027 47.619 0.00 0.00 0.00 5.87
538 539 6.758886 TCAAATTTCTCTTCCTATCTCTTCGC 59.241 38.462 0.00 0.00 0.00 4.70
569 570 2.361737 GAGCAAAGGAGGTGGGGC 60.362 66.667 0.00 0.00 0.00 5.80
586 587 1.136984 GAGGTACGTGCGTCAGGAG 59.863 63.158 19.37 0.00 0.00 3.69
635 636 2.770048 CCTAGCTGGGGAGTGGGG 60.770 72.222 8.57 0.00 0.00 4.96
680 681 1.450491 GAGGAAAGGCCGAGGAAGC 60.450 63.158 0.00 0.00 43.43 3.86
688 689 1.223211 GGCAGAGAGAGGAAAGGCC 59.777 63.158 0.00 0.00 0.00 5.19
709 710 2.111878 GGATCCAGGGATGCACCG 59.888 66.667 14.15 0.00 41.65 4.94
877 2155 1.613630 GGGCCTCCTCTTCACCTCA 60.614 63.158 0.84 0.00 0.00 3.86
878 2156 0.985490 ATGGGCCTCCTCTTCACCTC 60.985 60.000 4.53 0.00 0.00 3.85
881 2159 1.225704 CCATGGGCCTCCTCTTCAC 59.774 63.158 2.85 0.00 0.00 3.18
892 2170 2.114838 GGATCTGCTCCCATGGGC 59.885 66.667 27.41 16.06 38.19 5.36
999 2295 0.464013 TCTCCGTCTCCGTCTCCATC 60.464 60.000 0.00 0.00 0.00 3.51
1000 2296 0.748729 GTCTCCGTCTCCGTCTCCAT 60.749 60.000 0.00 0.00 0.00 3.41
1001 2297 1.376942 GTCTCCGTCTCCGTCTCCA 60.377 63.158 0.00 0.00 0.00 3.86
1002 2298 2.462782 CGTCTCCGTCTCCGTCTCC 61.463 68.421 0.00 0.00 0.00 3.71
1003 2299 1.018226 TTCGTCTCCGTCTCCGTCTC 61.018 60.000 0.00 0.00 35.01 3.36
1004 2300 1.004080 TTCGTCTCCGTCTCCGTCT 60.004 57.895 0.00 0.00 35.01 4.18
1007 2303 1.716760 CTCTTCGTCTCCGTCTCCG 59.283 63.158 0.00 0.00 35.01 4.63
1045 2341 3.512680 CCTTCTTACCGCCGATGATATC 58.487 50.000 0.00 0.00 0.00 1.63
1047 2343 1.000506 GCCTTCTTACCGCCGATGATA 59.999 52.381 0.00 0.00 0.00 2.15
1049 2345 1.143183 GCCTTCTTACCGCCGATGA 59.857 57.895 0.00 0.00 0.00 2.92
1056 2362 2.884207 GGCGTCGCCTTCTTACCG 60.884 66.667 28.98 0.00 46.69 4.02
1355 2667 8.031848 TCAAATGCTTCCTCAATAAATTTTGC 57.968 30.769 0.00 0.00 0.00 3.68
1366 2678 9.412460 ACTTATATTTCATCAAATGCTTCCTCA 57.588 29.630 0.00 0.00 33.95 3.86
1482 4410 5.968848 CGAACCTCGAAAAGAAAAATGAACA 59.031 36.000 0.00 0.00 43.74 3.18
1508 4436 5.277601 AGACAAATTGATAACACGAACGG 57.722 39.130 0.00 0.00 0.00 4.44
1509 4437 5.007039 CGAGACAAATTGATAACACGAACG 58.993 41.667 0.00 0.00 0.00 3.95
1510 4438 5.912528 ACGAGACAAATTGATAACACGAAC 58.087 37.500 0.00 0.00 0.00 3.95
1511 4439 6.533819 AACGAGACAAATTGATAACACGAA 57.466 33.333 0.00 0.00 0.00 3.85
1512 4440 6.533819 AAACGAGACAAATTGATAACACGA 57.466 33.333 0.00 0.00 0.00 4.35
1513 4441 8.702408 TTTAAACGAGACAAATTGATAACACG 57.298 30.769 0.00 1.99 0.00 4.49
1515 4443 9.619316 CCATTTAAACGAGACAAATTGATAACA 57.381 29.630 0.00 0.00 0.00 2.41
1596 4524 0.829182 ACCTTTGCTTGGCCCTCTTG 60.829 55.000 0.00 0.00 0.00 3.02
1701 4630 9.571810 GATTGCACTAAATCATCAACAATAACA 57.428 29.630 0.00 0.00 36.69 2.41
1742 4671 4.021192 ACAGAATGGTAACCTGGCATTTTG 60.021 41.667 11.25 11.25 43.62 2.44
1798 4734 7.317390 AGTTTTTGGTACGACAACTTGAAATT 58.683 30.769 0.00 0.00 0.00 1.82
1862 4819 3.152341 GCCTGCTGGTAATGCTATCAAT 58.848 45.455 11.69 0.00 35.27 2.57
1870 4827 3.266510 TGACTAAGCCTGCTGGTAATG 57.733 47.619 11.69 2.87 35.27 1.90
2118 5097 0.104671 GCAGCCAAAAGTTTCTGCCA 59.895 50.000 14.02 0.00 44.35 4.92
2178 5157 3.096852 TCATACGACTGACCAGGAACAT 58.903 45.455 0.00 0.00 0.00 2.71
2185 5164 3.259625 TGAACCATTCATACGACTGACCA 59.740 43.478 0.00 0.00 34.08 4.02
2201 5181 3.588955 CAGAACTCACGATCATGAACCA 58.411 45.455 0.00 0.00 0.00 3.67
2211 5191 3.556213 CCACCAATTACCAGAACTCACGA 60.556 47.826 0.00 0.00 0.00 4.35
2217 5197 4.825085 TGAGAAACCACCAATTACCAGAAC 59.175 41.667 0.00 0.00 0.00 3.01
2241 5221 4.705023 GCCTAGCTGAAAAATAGGGAACAA 59.295 41.667 0.00 0.00 37.20 2.83
2417 5403 2.810274 CCACATTCATATCTGAAGGGCG 59.190 50.000 9.83 1.56 45.21 6.13
2503 5491 9.160496 GATTCAACACAATTAGATGACTCTCTT 57.840 33.333 0.00 0.00 32.66 2.85
2571 5559 3.738282 GCAAACAAACAACGGATGCATAA 59.262 39.130 0.00 0.00 32.80 1.90
2592 5580 8.082242 AGTCGAAAATATGCCCAATAAAATAGC 58.918 33.333 0.00 0.00 0.00 2.97
2648 5636 5.296151 TCTTCCAACACCAGATATCCATC 57.704 43.478 0.00 0.00 0.00 3.51
2654 5642 3.830178 TCGTCTTCTTCCAACACCAGATA 59.170 43.478 0.00 0.00 0.00 1.98
2673 5662 3.442977 AGAAGTATTTGGCTACTCGTCGT 59.557 43.478 0.00 0.00 30.68 4.34
2743 5732 2.547642 GGATAGGACTGCTGAGCACATC 60.548 54.545 1.40 4.03 33.79 3.06
2744 5733 1.415659 GGATAGGACTGCTGAGCACAT 59.584 52.381 1.40 0.00 33.79 3.21
2746 5735 0.105778 GGGATAGGACTGCTGAGCAC 59.894 60.000 1.40 0.00 33.79 4.40
2753 5742 1.559682 TGAAGTTGGGGATAGGACTGC 59.440 52.381 0.00 0.00 0.00 4.40
2766 5755 5.562506 ACAGAAGCATCATCATGAAGTTG 57.437 39.130 0.00 1.68 30.57 3.16
2878 5867 8.641498 ATCATTTCTTATTTCACTGTGTTCCT 57.359 30.769 7.79 0.00 0.00 3.36
3043 6032 4.625972 TGTATGATGCAAATGACAGCAG 57.374 40.909 0.00 0.00 44.94 4.24
3044 6033 4.380761 GGTTGTATGATGCAAATGACAGCA 60.381 41.667 0.00 0.00 45.92 4.41
3045 6034 4.107622 GGTTGTATGATGCAAATGACAGC 58.892 43.478 0.00 0.00 0.00 4.40
3046 6035 5.571784 AGGTTGTATGATGCAAATGACAG 57.428 39.130 0.00 0.00 0.00 3.51
3048 6037 6.646240 ACAAAAGGTTGTATGATGCAAATGAC 59.354 34.615 0.00 0.00 46.33 3.06
3086 6126 5.045869 TCCGTTTTCCTAGAGGTCAAATGAT 60.046 40.000 12.89 0.00 36.34 2.45
3132 6172 1.747355 GCAAACCTCCATGACATCAGG 59.253 52.381 8.03 8.03 0.00 3.86
3161 6201 3.880490 TGACTAAACATCACCACACCAAC 59.120 43.478 0.00 0.00 0.00 3.77
3218 6258 5.353123 TCACCGCTATGTTGAATAAGGAAAC 59.647 40.000 0.00 0.00 0.00 2.78
3238 6278 3.481453 AGTTTTCTCTTGCTTCCTCACC 58.519 45.455 0.00 0.00 0.00 4.02
3239 6279 6.809630 ATAAGTTTTCTCTTGCTTCCTCAC 57.190 37.500 0.00 0.00 0.00 3.51
3297 6337 6.855763 AATTCAAATGACCAAGCCATAAGA 57.144 33.333 0.00 0.00 0.00 2.10
3348 6388 7.887996 TTATGCATTTTAACCAGAGCTTTTG 57.112 32.000 3.54 0.00 0.00 2.44
3483 6523 5.968528 AACTATGTCTGAGAAGAACGAGT 57.031 39.130 0.00 0.00 0.00 4.18
3546 6586 1.504912 CCTCCTCCAGTGATGTCCAT 58.495 55.000 0.00 0.00 0.00 3.41
3552 6592 3.842923 CGCGCCTCCTCCAGTGAT 61.843 66.667 0.00 0.00 0.00 3.06
3705 6745 7.706179 GCAGACATATAATCTAGAGAGAATGCC 59.294 40.741 0.00 0.00 34.61 4.40
4003 7043 0.250513 AAGGATCAGCGGACCTTGAC 59.749 55.000 15.84 0.00 41.64 3.18
4032 7072 0.046242 TCTGGGACTGGGAATGGGAT 59.954 55.000 0.00 0.00 0.00 3.85
4051 7091 2.686915 GACCTTGATGCTGCTGCTTATT 59.313 45.455 17.00 0.00 40.48 1.40
4059 7099 1.419387 AGGATAGGACCTTGATGCTGC 59.581 52.381 0.00 0.00 36.86 5.25
4062 7102 3.238597 AGAGAGGATAGGACCTTGATGC 58.761 50.000 0.00 0.00 40.73 3.91
4109 7149 2.037641 TCTGACACATGAACAGGTCCAG 59.962 50.000 0.00 10.18 33.19 3.86
4115 7155 3.873361 ACAACAGTCTGACACATGAACAG 59.127 43.478 10.88 5.99 0.00 3.16
4351 7394 5.828328 CCCTATACTATCAGTGTCAGTGTCA 59.172 44.000 7.54 0.00 0.00 3.58
4352 7395 5.828859 ACCCTATACTATCAGTGTCAGTGTC 59.171 44.000 7.54 0.00 0.00 3.67
4353 7396 5.767670 ACCCTATACTATCAGTGTCAGTGT 58.232 41.667 7.54 5.79 0.00 3.55
4354 7397 6.507900 CAACCCTATACTATCAGTGTCAGTG 58.492 44.000 0.78 0.78 0.00 3.66
4355 7398 5.069251 GCAACCCTATACTATCAGTGTCAGT 59.931 44.000 5.06 5.06 0.00 3.41
4356 7399 5.069119 TGCAACCCTATACTATCAGTGTCAG 59.931 44.000 0.00 0.00 0.00 3.51
4535 7578 6.881065 TCTTGTTCTTCACTAATTGCAGCTAT 59.119 34.615 0.00 0.00 0.00 2.97
4544 7587 9.553064 CCATAAGCTATCTTGTTCTTCACTAAT 57.447 33.333 0.00 0.00 33.85 1.73
4811 7856 1.423541 ACTTGGGTCATGTGCCTGTTA 59.576 47.619 8.51 0.00 0.00 2.41
4986 8032 8.447053 TCTTTTGGTTCAATTTTGTAAAAGCAC 58.553 29.630 0.00 0.00 35.04 4.40
5089 8136 3.895232 ATGCAAGACGGAGATACAGTT 57.105 42.857 0.00 0.00 0.00 3.16
5099 8146 7.593273 TGAATTTAACAGTAAAATGCAAGACGG 59.407 33.333 0.00 0.00 30.50 4.79
5252 8300 4.904241 AGCAGGCACTTCCTTGATATATC 58.096 43.478 5.73 5.73 44.75 1.63
5683 8817 7.604164 TGTTTGTGAAGTTAAATGGAAAAGCAA 59.396 29.630 0.00 0.00 0.00 3.91
5705 8840 5.446143 TGCGTGGTCAGAATAAAATGTTT 57.554 34.783 0.00 0.00 0.00 2.83
5835 8971 1.444672 CTCGATCAGCATGGAGGCA 59.555 57.895 0.00 0.00 36.16 4.75
5957 9094 2.993220 CAACATAGAACTACAGTGCGCA 59.007 45.455 5.66 5.66 0.00 6.09
6222 9362 7.785033 TGCCCAGTAAGTTTTATAGTAGTACC 58.215 38.462 0.00 0.00 0.00 3.34
6241 9381 8.945481 TTCAACAATTAAATATGATTGCCCAG 57.055 30.769 6.63 0.00 36.31 4.45
6263 9403 8.731275 ATTTCGAACCAGATTATACACATTCA 57.269 30.769 0.00 0.00 0.00 2.57
6283 9423 4.196193 TGCTTAGGTGGTGGATTATTTCG 58.804 43.478 0.00 0.00 0.00 3.46
6285 9425 5.450818 TCTGCTTAGGTGGTGGATTATTT 57.549 39.130 0.00 0.00 0.00 1.40
6403 9543 3.923425 ACCCTCTCACCCCTTTTATTCTT 59.077 43.478 0.00 0.00 0.00 2.52
6405 9545 3.681874 CGACCCTCTCACCCCTTTTATTC 60.682 52.174 0.00 0.00 0.00 1.75
6420 9560 1.363744 CAGATTGACAAGCGACCCTC 58.636 55.000 0.00 0.00 0.00 4.30
6428 9568 1.236616 TGCGGTGCCAGATTGACAAG 61.237 55.000 0.00 0.00 0.00 3.16
6448 9588 4.082787 TGGCGCCTTCTAAGAGAAATTTTG 60.083 41.667 29.70 0.00 33.19 2.44
6455 9595 1.898154 GGTGGCGCCTTCTAAGAGA 59.102 57.895 29.70 0.00 0.00 3.10
6594 9734 2.367241 TCTTGTTCATCGTCCAGGACAA 59.633 45.455 20.13 0.31 32.09 3.18
6649 9790 1.815003 GAGCAAAGCTGTATGGCAAGT 59.185 47.619 0.00 0.00 39.88 3.16
6660 9801 0.035458 AAGTGTAGCCGAGCAAAGCT 59.965 50.000 0.00 0.00 43.88 3.74
6692 9833 3.621268 CGATTGGAGCGGAAGACATTAAA 59.379 43.478 0.00 0.00 0.00 1.52
6745 9886 1.602416 GCGCCGATTAGGACTTAGGAC 60.602 57.143 0.00 0.00 45.00 3.85
6792 9933 0.179000 CGCTGGCTTTCTATGAGGGT 59.821 55.000 0.00 0.00 0.00 4.34
7036 10181 5.609423 TGTGAAACATCTTCCCAAAATTGG 58.391 37.500 5.16 5.16 45.67 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.