Multiple sequence alignment - TraesCS4A01G263400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G263400 chr4A 100.000 3866 0 0 740 4605 575798312 575802177 0.000000e+00 7140.0
1 TraesCS4A01G263400 chr4A 100.000 411 0 0 1 411 575797573 575797983 0.000000e+00 760.0
2 TraesCS4A01G263400 chr4B 94.946 2948 113 16 817 3735 40065416 40062476 0.000000e+00 4586.0
3 TraesCS4A01G263400 chr4B 80.645 682 45 46 3966 4605 39309742 39310378 9.090000e-122 448.0
4 TraesCS4A01G263400 chr4B 87.541 305 22 6 4 294 40067006 40066704 5.710000e-89 339.0
5 TraesCS4A01G263400 chr4B 87.805 82 2 6 742 820 40066178 40066102 6.350000e-14 89.8
6 TraesCS4A01G263400 chr4D 90.070 1571 116 16 869 2431 27385152 27383614 0.000000e+00 2001.0
7 TraesCS4A01G263400 chr4D 89.882 929 68 12 2830 3738 27383049 27382127 0.000000e+00 1171.0
8 TraesCS4A01G263400 chr4D 81.331 691 59 33 3947 4605 26933137 26933789 8.900000e-137 497.0
9 TraesCS4A01G263400 chr4D 91.440 257 12 3 155 411 27385747 27385501 1.230000e-90 344.0
10 TraesCS4A01G263400 chr4D 94.805 154 6 1 1 154 27386425 27386274 5.950000e-59 239.0
11 TraesCS4A01G263400 chr4D 79.231 390 35 17 2432 2792 27383531 27383159 3.580000e-56 230.0
12 TraesCS4A01G263400 chr4D 92.308 91 5 2 780 870 27385346 27385258 1.340000e-25 128.0
13 TraesCS4A01G263400 chr4D 97.674 43 1 0 742 784 27385401 27385359 1.780000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G263400 chr4A 575797573 575802177 4604 False 3950.000000 7140 100.000000 1 4605 2 chr4A.!!$F1 4604
1 TraesCS4A01G263400 chr4B 40062476 40067006 4530 True 1671.600000 4586 90.097333 4 3735 3 chr4B.!!$R1 3731
2 TraesCS4A01G263400 chr4B 39309742 39310378 636 False 448.000000 448 80.645000 3966 4605 1 chr4B.!!$F1 639
3 TraesCS4A01G263400 chr4D 27382127 27386425 4298 True 598.285714 2001 90.772857 1 3738 7 chr4D.!!$R1 3737
4 TraesCS4A01G263400 chr4D 26933137 26933789 652 False 497.000000 497 81.331000 3947 4605 1 chr4D.!!$F1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 1650 0.174389 AGTTCATGCTCTCGTGCGAT 59.826 50.000 0.0 0.0 35.36 4.58 F
1439 3123 0.332632 CCATTGGTGTCTGGTGGGAT 59.667 55.000 0.0 0.0 0.00 3.85 F
1726 3410 1.001378 CTTGGTTTCAGGCTTGTTCCG 60.001 52.381 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 3961 1.134995 CAAGGCAGCGATCAGTCACTA 60.135 52.381 0.00 0.0 0.00 2.74 R
3231 5115 0.963962 AGCTTGAACTGTGCCATTGG 59.036 50.000 0.00 0.0 0.00 3.16 R
3635 5530 1.806542 AGTGGCACATGACGAATCAAC 59.193 47.619 21.41 0.0 44.52 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.531240 CACAACAAAGAACAGCTGTTTTACAT 59.469 34.615 31.58 15.67 38.56 2.29
76 77 2.104622 CAGCCAACAAAATCCACCCTTT 59.895 45.455 0.00 0.00 0.00 3.11
82 83 3.292460 ACAAAATCCACCCTTTGTCGAA 58.708 40.909 0.00 0.00 40.83 3.71
83 84 3.702045 ACAAAATCCACCCTTTGTCGAAA 59.298 39.130 0.00 0.00 40.83 3.46
144 145 2.024414 GCTATGTTACCAAAGCCCAGG 58.976 52.381 0.00 0.00 0.00 4.45
164 691 2.124693 GGCCAGGAGACGAGGAGAG 61.125 68.421 0.00 0.00 32.87 3.20
204 733 1.471684 GCTTCAGGGCATTTCTGTCAG 59.528 52.381 0.00 0.00 34.15 3.51
294 823 2.294078 CCCTGCGGTTCTTCTCCCT 61.294 63.158 0.00 0.00 0.00 4.20
295 824 1.219393 CCTGCGGTTCTTCTCCCTC 59.781 63.158 0.00 0.00 0.00 4.30
296 825 1.261238 CCTGCGGTTCTTCTCCCTCT 61.261 60.000 0.00 0.00 0.00 3.69
297 826 0.174617 CTGCGGTTCTTCTCCCTCTC 59.825 60.000 0.00 0.00 0.00 3.20
298 827 1.258445 TGCGGTTCTTCTCCCTCTCC 61.258 60.000 0.00 0.00 0.00 3.71
299 828 1.962321 GCGGTTCTTCTCCCTCTCCC 61.962 65.000 0.00 0.00 0.00 4.30
330 878 6.201615 CAGTTCTTTGCTTCCAAATCTTTTCC 59.798 38.462 0.00 0.00 39.98 3.13
350 898 1.140252 CGTTCCCCGATCCATTTACCT 59.860 52.381 0.00 0.00 39.56 3.08
352 900 0.472471 TCCCCGATCCATTTACCTGC 59.528 55.000 0.00 0.00 0.00 4.85
353 901 0.537371 CCCCGATCCATTTACCTGCC 60.537 60.000 0.00 0.00 0.00 4.85
354 902 0.474184 CCCGATCCATTTACCTGCCT 59.526 55.000 0.00 0.00 0.00 4.75
355 903 1.597742 CCGATCCATTTACCTGCCTG 58.402 55.000 0.00 0.00 0.00 4.85
356 904 0.947244 CGATCCATTTACCTGCCTGC 59.053 55.000 0.00 0.00 0.00 4.85
375 923 1.675116 GCCTGTTCCTTCGAAGGTACC 60.675 57.143 36.43 27.01 43.48 3.34
382 930 3.934068 TCCTTCGAAGGTACCATGTTTC 58.066 45.455 36.74 8.09 46.54 2.78
383 931 3.007635 CCTTCGAAGGTACCATGTTTCC 58.992 50.000 32.16 0.00 41.41 3.13
793 1650 0.174389 AGTTCATGCTCTCGTGCGAT 59.826 50.000 0.00 0.00 35.36 4.58
800 1657 1.483424 GCTCTCGTGCGATTGGCTAC 61.483 60.000 0.00 0.00 44.05 3.58
864 2410 8.873830 CATTTATGTGTTGTAGGAGTAGTCAAG 58.126 37.037 0.00 0.00 0.00 3.02
865 2411 7.534723 TTATGTGTTGTAGGAGTAGTCAAGT 57.465 36.000 0.00 0.00 0.00 3.16
920 2586 5.129320 ACTTTTTCTTGGACCAAATTCTGCT 59.871 36.000 8.59 0.00 0.00 4.24
932 2598 4.761739 CCAAATTCTGCTAGTTCTCCAACA 59.238 41.667 0.00 0.00 34.60 3.33
950 2616 4.923281 CCAACAATTTCGATTCTTTGGTCC 59.077 41.667 0.00 0.00 0.00 4.46
988 2654 2.228103 TGACGCAGAGTGTACGAATCTT 59.772 45.455 0.00 0.00 0.00 2.40
1023 2689 1.685224 GATGCTTCCCTCACCACCA 59.315 57.895 0.00 0.00 0.00 4.17
1046 2712 0.654683 CAGCTAAGCATCGTCAAGGC 59.345 55.000 0.00 0.00 0.00 4.35
1100 2778 4.286808 TGTCAAGGAGGAGAATGTTGATGA 59.713 41.667 0.00 0.00 30.27 2.92
1101 2779 5.045359 TGTCAAGGAGGAGAATGTTGATGAT 60.045 40.000 0.00 0.00 30.27 2.45
1102 2780 5.526846 GTCAAGGAGGAGAATGTTGATGATC 59.473 44.000 0.00 0.00 30.27 2.92
1103 2781 5.190330 TCAAGGAGGAGAATGTTGATGATCA 59.810 40.000 0.00 0.00 0.00 2.92
1104 2782 5.908562 AGGAGGAGAATGTTGATGATCAT 57.091 39.130 8.25 8.25 0.00 2.45
1105 2783 5.867330 AGGAGGAGAATGTTGATGATCATC 58.133 41.667 25.91 25.91 38.29 2.92
1106 2784 5.002516 GGAGGAGAATGTTGATGATCATCC 58.997 45.833 28.61 16.86 37.02 3.51
1107 2785 5.455755 GGAGGAGAATGTTGATGATCATCCA 60.456 44.000 28.61 21.29 37.53 3.41
1108 2786 5.622180 AGGAGAATGTTGATGATCATCCAG 58.378 41.667 28.61 0.00 37.02 3.86
1109 2787 5.368816 AGGAGAATGTTGATGATCATCCAGA 59.631 40.000 28.61 19.05 37.02 3.86
1110 2788 6.044520 AGGAGAATGTTGATGATCATCCAGAT 59.955 38.462 28.61 20.31 40.48 2.90
1111 2789 6.149640 GGAGAATGTTGATGATCATCCAGATG 59.850 42.308 28.61 0.98 37.00 2.90
1119 2797 4.498894 TGATCATCCAGATGCAAGTTCT 57.501 40.909 2.63 0.00 37.00 3.01
1143 2821 1.004044 CCATCTGTTGACCTTGAGGCT 59.996 52.381 0.00 0.00 39.32 4.58
1429 3113 1.238439 CGAGCTTGTTCCATTGGTGT 58.762 50.000 1.86 0.00 0.00 4.16
1439 3123 0.332632 CCATTGGTGTCTGGTGGGAT 59.667 55.000 0.00 0.00 0.00 3.85
1445 3129 2.039746 TGGTGTCTGGTGGGATGTTAAG 59.960 50.000 0.00 0.00 0.00 1.85
1494 3178 3.377172 GGCTAATGTCGCTTTGGTGTAAT 59.623 43.478 0.00 0.00 0.00 1.89
1533 3217 4.564782 AGCAGATCAAATGAGTCTTGGA 57.435 40.909 0.00 0.00 0.00 3.53
1536 3220 5.182760 AGCAGATCAAATGAGTCTTGGAAAC 59.817 40.000 0.00 0.00 0.00 2.78
1647 3331 2.864885 ACTGGGTGGATGAGATCTCT 57.135 50.000 22.95 9.13 0.00 3.10
1726 3410 1.001378 CTTGGTTTCAGGCTTGTTCCG 60.001 52.381 0.00 0.00 0.00 4.30
2060 3745 2.436417 CGGCTACCAATGGATAATGGG 58.564 52.381 6.16 0.00 41.17 4.00
2073 3758 3.633986 GGATAATGGGCTCCTTTTGACTG 59.366 47.826 0.00 0.00 0.00 3.51
2133 3818 3.064545 GCTACTGAACTTTGCTATGCCTG 59.935 47.826 0.00 0.00 0.00 4.85
2205 3890 1.077265 CACTCCCACCTTTGCCCAT 59.923 57.895 0.00 0.00 0.00 4.00
2247 3932 5.663106 ACATACCCATAGCCTCCATATACTG 59.337 44.000 0.00 0.00 0.00 2.74
2276 3961 6.543465 TCACTTCTCAACTTCATGTGTTCATT 59.457 34.615 0.00 0.00 31.15 2.57
2500 4274 4.627611 TCTCGTGTAGCTGTATACAACC 57.372 45.455 7.06 1.22 37.41 3.77
2536 4310 7.429636 TTTTAAGAAACTCCGTTGTCCTATG 57.570 36.000 0.00 0.00 0.00 2.23
2627 4402 8.753497 AATTAGGATGTCTAGCCCTTAAAAAG 57.247 34.615 0.00 0.00 30.80 2.27
2693 4484 4.319766 CCTGCACATTATCAACTTATCGGC 60.320 45.833 0.00 0.00 0.00 5.54
2759 4551 4.096231 TGTCTATCATGGCGAATTTTGGTG 59.904 41.667 0.00 0.00 0.00 4.17
2769 4561 3.613910 GCGAATTTTGGTGCCTTACATGT 60.614 43.478 2.69 2.69 0.00 3.21
2770 4562 4.380023 GCGAATTTTGGTGCCTTACATGTA 60.380 41.667 0.08 0.08 0.00 2.29
2771 4563 5.678616 GCGAATTTTGGTGCCTTACATGTAT 60.679 40.000 6.36 0.00 0.00 2.29
2774 4570 7.009174 CGAATTTTGGTGCCTTACATGTATTTC 59.991 37.037 6.36 0.00 0.00 2.17
2776 4572 6.909550 TTTGGTGCCTTACATGTATTTCTT 57.090 33.333 6.36 0.00 0.00 2.52
2851 4729 1.034838 TTTTGTGTGCCTCCGCTTGT 61.035 50.000 0.00 0.00 35.36 3.16
2854 4732 2.031012 TGTGCCTCCGCTTGTCTG 59.969 61.111 0.00 0.00 35.36 3.51
2877 4755 7.559897 TCTGACAACAATTCCTCTTTAAAGGTT 59.440 33.333 15.13 6.65 37.69 3.50
2882 4763 9.196552 CAACAATTCCTCTTTAAAGGTTTGATC 57.803 33.333 15.13 0.00 37.69 2.92
2889 4770 8.537016 TCCTCTTTAAAGGTTTGATCTTATCGA 58.463 33.333 15.13 0.00 37.69 3.59
2909 4790 3.669536 GAGAAAAGAGGTGAGGGACAAG 58.330 50.000 0.00 0.00 0.00 3.16
2953 4837 3.490933 GGGTCCTTGTTTCAAAGCTTCAC 60.491 47.826 0.00 0.00 0.00 3.18
2955 4839 4.105486 GTCCTTGTTTCAAAGCTTCACAC 58.895 43.478 0.00 0.00 0.00 3.82
2957 4841 2.842208 TGTTTCAAAGCTTCACACCG 57.158 45.000 0.00 0.00 0.00 4.94
2982 4866 5.501156 GTTGGATCCATTCCTTCTACAAGT 58.499 41.667 17.06 0.00 45.68 3.16
2988 4872 4.844085 TCCATTCCTTCTACAAGTGGAAGA 59.156 41.667 22.80 8.53 46.91 2.87
2990 4874 6.012508 TCCATTCCTTCTACAAGTGGAAGATT 60.013 38.462 22.80 8.25 46.91 2.40
3023 4907 3.229697 AGGCCAAAGCTGTTAAGAACT 57.770 42.857 5.01 0.00 39.73 3.01
3026 4910 2.884639 GCCAAAGCTGTTAAGAACTGGA 59.115 45.455 0.00 0.00 35.50 3.86
3084 4968 1.148273 GTGTGAGGTCTGTTGGCCA 59.852 57.895 0.00 0.00 0.00 5.36
3113 4997 2.282745 GGGCAGCAGCAGAGGTTT 60.283 61.111 2.65 0.00 44.61 3.27
3528 5423 4.693566 TCGATGGAGTTGAACCATGTAAAC 59.306 41.667 0.00 0.00 46.48 2.01
3595 5490 1.203052 AGCATTTGAAATCACTGGCGG 59.797 47.619 0.00 0.00 0.00 6.13
3596 5491 1.736696 GCATTTGAAATCACTGGCGGG 60.737 52.381 0.00 0.00 0.00 6.13
3606 5501 2.124193 CTGGCGGGGATTGATGCA 60.124 61.111 0.00 0.00 0.00 3.96
3635 5530 4.170062 CGTTGCATGCTCGCCCTG 62.170 66.667 20.33 0.00 0.00 4.45
3735 5630 0.658536 GCAACAACTCGCAGTTCTGC 60.659 55.000 13.97 13.97 36.03 4.26
3736 5631 0.940126 CAACAACTCGCAGTTCTGCT 59.060 50.000 20.12 1.73 36.03 4.24
3739 5634 0.601046 CAACTCGCAGTTCTGCTGGA 60.601 55.000 20.12 11.38 45.14 3.86
3740 5635 0.106708 AACTCGCAGTTCTGCTGGAA 59.893 50.000 20.12 5.01 45.14 3.53
3741 5636 0.106708 ACTCGCAGTTCTGCTGGAAA 59.893 50.000 20.12 2.96 45.14 3.13
3742 5637 1.271054 ACTCGCAGTTCTGCTGGAAAT 60.271 47.619 20.12 2.92 45.14 2.17
3743 5638 1.808945 CTCGCAGTTCTGCTGGAAATT 59.191 47.619 20.12 0.00 45.14 1.82
3744 5639 3.002791 CTCGCAGTTCTGCTGGAAATTA 58.997 45.455 20.12 0.36 45.14 1.40
3745 5640 3.407698 TCGCAGTTCTGCTGGAAATTAA 58.592 40.909 20.12 0.00 45.14 1.40
3746 5641 3.818210 TCGCAGTTCTGCTGGAAATTAAA 59.182 39.130 20.12 0.00 45.14 1.52
3747 5642 3.914364 CGCAGTTCTGCTGGAAATTAAAC 59.086 43.478 20.12 0.00 45.14 2.01
3748 5643 3.914364 GCAGTTCTGCTGGAAATTAAACG 59.086 43.478 16.29 0.00 45.14 3.60
3749 5644 4.320202 GCAGTTCTGCTGGAAATTAAACGA 60.320 41.667 16.29 0.00 45.14 3.85
3750 5645 5.385617 CAGTTCTGCTGGAAATTAAACGAG 58.614 41.667 0.00 0.00 41.42 4.18
3751 5646 5.179368 CAGTTCTGCTGGAAATTAAACGAGA 59.821 40.000 0.00 0.00 41.42 4.04
3752 5647 5.940470 AGTTCTGCTGGAAATTAAACGAGAT 59.060 36.000 0.00 0.00 35.51 2.75
3753 5648 5.801350 TCTGCTGGAAATTAAACGAGATG 57.199 39.130 0.00 0.00 0.00 2.90
3754 5649 5.487433 TCTGCTGGAAATTAAACGAGATGA 58.513 37.500 0.00 0.00 0.00 2.92
3755 5650 5.582269 TCTGCTGGAAATTAAACGAGATGAG 59.418 40.000 0.00 0.00 0.00 2.90
3756 5651 4.094887 TGCTGGAAATTAAACGAGATGAGC 59.905 41.667 0.00 0.00 0.00 4.26
3757 5652 4.094887 GCTGGAAATTAAACGAGATGAGCA 59.905 41.667 0.00 0.00 0.00 4.26
3758 5653 5.391950 GCTGGAAATTAAACGAGATGAGCAA 60.392 40.000 0.00 0.00 0.00 3.91
3759 5654 6.182039 TGGAAATTAAACGAGATGAGCAAG 57.818 37.500 0.00 0.00 0.00 4.01
3760 5655 5.937540 TGGAAATTAAACGAGATGAGCAAGA 59.062 36.000 0.00 0.00 0.00 3.02
3761 5656 6.599244 TGGAAATTAAACGAGATGAGCAAGAT 59.401 34.615 0.00 0.00 0.00 2.40
3762 5657 7.768582 TGGAAATTAAACGAGATGAGCAAGATA 59.231 33.333 0.00 0.00 0.00 1.98
3763 5658 8.279103 GGAAATTAAACGAGATGAGCAAGATAG 58.721 37.037 0.00 0.00 0.00 2.08
3764 5659 7.721286 AATTAAACGAGATGAGCAAGATAGG 57.279 36.000 0.00 0.00 0.00 2.57
3765 5660 2.810439 ACGAGATGAGCAAGATAGGC 57.190 50.000 0.00 0.00 0.00 3.93
3766 5661 1.342819 ACGAGATGAGCAAGATAGGCC 59.657 52.381 0.00 0.00 0.00 5.19
3767 5662 1.668337 CGAGATGAGCAAGATAGGCCG 60.668 57.143 0.00 0.00 0.00 6.13
3768 5663 0.034616 AGATGAGCAAGATAGGCCGC 59.965 55.000 0.00 0.00 0.00 6.53
3769 5664 0.952984 GATGAGCAAGATAGGCCGCC 60.953 60.000 0.00 0.00 0.00 6.13
3770 5665 2.281139 GAGCAAGATAGGCCGCCC 60.281 66.667 5.55 0.00 0.00 6.13
3771 5666 3.834013 GAGCAAGATAGGCCGCCCC 62.834 68.421 5.55 0.00 0.00 5.80
3772 5667 4.956932 GCAAGATAGGCCGCCCCC 62.957 72.222 5.55 0.00 0.00 5.40
3773 5668 4.626081 CAAGATAGGCCGCCCCCG 62.626 72.222 5.55 0.00 0.00 5.73
3785 5680 3.733972 CCCCCGCATTACCACCCA 61.734 66.667 0.00 0.00 0.00 4.51
3786 5681 2.357056 CCCCGCATTACCACCCAA 59.643 61.111 0.00 0.00 0.00 4.12
3787 5682 2.049767 CCCCGCATTACCACCCAAC 61.050 63.158 0.00 0.00 0.00 3.77
3788 5683 1.001393 CCCGCATTACCACCCAACT 60.001 57.895 0.00 0.00 0.00 3.16
3789 5684 1.029947 CCCGCATTACCACCCAACTC 61.030 60.000 0.00 0.00 0.00 3.01
3790 5685 1.029947 CCGCATTACCACCCAACTCC 61.030 60.000 0.00 0.00 0.00 3.85
3791 5686 1.029947 CGCATTACCACCCAACTCCC 61.030 60.000 0.00 0.00 0.00 4.30
3792 5687 0.039035 GCATTACCACCCAACTCCCA 59.961 55.000 0.00 0.00 0.00 4.37
3793 5688 1.549037 GCATTACCACCCAACTCCCAA 60.549 52.381 0.00 0.00 0.00 4.12
3794 5689 2.167662 CATTACCACCCAACTCCCAAC 58.832 52.381 0.00 0.00 0.00 3.77
3795 5690 0.479378 TTACCACCCAACTCCCAACC 59.521 55.000 0.00 0.00 0.00 3.77
3796 5691 0.698198 TACCACCCAACTCCCAACCA 60.698 55.000 0.00 0.00 0.00 3.67
3797 5692 1.530655 CCACCCAACTCCCAACCAC 60.531 63.158 0.00 0.00 0.00 4.16
3798 5693 1.536676 CACCCAACTCCCAACCACT 59.463 57.895 0.00 0.00 0.00 4.00
3799 5694 0.768622 CACCCAACTCCCAACCACTA 59.231 55.000 0.00 0.00 0.00 2.74
3800 5695 1.144093 CACCCAACTCCCAACCACTAA 59.856 52.381 0.00 0.00 0.00 2.24
3801 5696 1.144298 ACCCAACTCCCAACCACTAAC 59.856 52.381 0.00 0.00 0.00 2.34
3802 5697 1.423921 CCCAACTCCCAACCACTAACT 59.576 52.381 0.00 0.00 0.00 2.24
3803 5698 2.640826 CCCAACTCCCAACCACTAACTA 59.359 50.000 0.00 0.00 0.00 2.24
3804 5699 3.073356 CCCAACTCCCAACCACTAACTAA 59.927 47.826 0.00 0.00 0.00 2.24
3805 5700 4.070009 CCAACTCCCAACCACTAACTAAC 58.930 47.826 0.00 0.00 0.00 2.34
3806 5701 4.070009 CAACTCCCAACCACTAACTAACC 58.930 47.826 0.00 0.00 0.00 2.85
3807 5702 3.320129 ACTCCCAACCACTAACTAACCA 58.680 45.455 0.00 0.00 0.00 3.67
3808 5703 3.914435 ACTCCCAACCACTAACTAACCAT 59.086 43.478 0.00 0.00 0.00 3.55
3809 5704 4.261801 CTCCCAACCACTAACTAACCATG 58.738 47.826 0.00 0.00 0.00 3.66
3810 5705 3.009695 TCCCAACCACTAACTAACCATGG 59.990 47.826 11.19 11.19 36.46 3.66
3811 5706 3.009695 CCCAACCACTAACTAACCATGGA 59.990 47.826 21.47 0.00 34.38 3.41
3812 5707 4.261801 CCAACCACTAACTAACCATGGAG 58.738 47.826 21.47 9.06 34.38 3.86
3813 5708 4.019681 CCAACCACTAACTAACCATGGAGA 60.020 45.833 21.47 4.27 34.38 3.71
3814 5709 5.339200 CCAACCACTAACTAACCATGGAGAT 60.339 44.000 21.47 3.36 34.38 2.75
3815 5710 6.180472 CAACCACTAACTAACCATGGAGATT 58.820 40.000 21.47 4.85 34.38 2.40
3816 5711 5.745227 ACCACTAACTAACCATGGAGATTG 58.255 41.667 21.47 4.72 34.38 2.67
3817 5712 5.126067 CCACTAACTAACCATGGAGATTGG 58.874 45.833 21.47 7.09 40.26 3.16
3818 5713 5.104527 CCACTAACTAACCATGGAGATTGGA 60.105 44.000 21.47 0.00 37.69 3.53
3819 5714 6.051717 CACTAACTAACCATGGAGATTGGAG 58.948 44.000 21.47 9.46 37.69 3.86
3820 5715 5.964477 ACTAACTAACCATGGAGATTGGAGA 59.036 40.000 21.47 0.00 37.69 3.71
3821 5716 5.983333 AACTAACCATGGAGATTGGAGAT 57.017 39.130 21.47 0.00 37.69 2.75
3822 5717 5.301835 ACTAACCATGGAGATTGGAGATG 57.698 43.478 21.47 0.00 37.69 2.90
3823 5718 3.589951 AACCATGGAGATTGGAGATGG 57.410 47.619 21.47 0.00 39.66 3.51
3824 5719 2.780414 ACCATGGAGATTGGAGATGGA 58.220 47.619 21.47 0.00 37.58 3.41
3825 5720 2.709934 ACCATGGAGATTGGAGATGGAG 59.290 50.000 21.47 0.00 37.58 3.86
3826 5721 2.977580 CCATGGAGATTGGAGATGGAGA 59.022 50.000 5.56 0.00 36.45 3.71
3827 5722 3.244491 CCATGGAGATTGGAGATGGAGAC 60.244 52.174 5.56 0.00 36.45 3.36
3828 5723 2.402564 TGGAGATTGGAGATGGAGACC 58.597 52.381 0.00 0.00 0.00 3.85
3829 5724 2.293118 TGGAGATTGGAGATGGAGACCA 60.293 50.000 0.00 0.00 38.19 4.02
3830 5725 2.103941 GGAGATTGGAGATGGAGACCAC 59.896 54.545 0.00 0.00 35.80 4.16
3831 5726 1.759445 AGATTGGAGATGGAGACCACG 59.241 52.381 0.00 0.00 35.80 4.94
3832 5727 1.757118 GATTGGAGATGGAGACCACGA 59.243 52.381 0.00 0.00 35.80 4.35
3833 5728 0.895530 TTGGAGATGGAGACCACGAC 59.104 55.000 0.00 0.00 35.80 4.34
3834 5729 1.313091 TGGAGATGGAGACCACGACG 61.313 60.000 0.00 0.00 35.80 5.12
3835 5730 1.030488 GGAGATGGAGACCACGACGA 61.030 60.000 0.00 0.00 35.80 4.20
3836 5731 0.099082 GAGATGGAGACCACGACGAC 59.901 60.000 0.00 0.00 35.80 4.34
3837 5732 0.608308 AGATGGAGACCACGACGACA 60.608 55.000 0.00 0.00 35.80 4.35
3838 5733 0.456221 GATGGAGACCACGACGACAT 59.544 55.000 0.00 0.00 35.80 3.06
3839 5734 0.173481 ATGGAGACCACGACGACATG 59.827 55.000 0.00 0.00 35.80 3.21
3840 5735 0.891904 TGGAGACCACGACGACATGA 60.892 55.000 0.00 0.00 0.00 3.07
3841 5736 0.242825 GGAGACCACGACGACATGAA 59.757 55.000 0.00 0.00 0.00 2.57
3842 5737 1.336517 GGAGACCACGACGACATGAAA 60.337 52.381 0.00 0.00 0.00 2.69
3843 5738 2.400399 GAGACCACGACGACATGAAAA 58.600 47.619 0.00 0.00 0.00 2.29
3844 5739 2.993899 GAGACCACGACGACATGAAAAT 59.006 45.455 0.00 0.00 0.00 1.82
3845 5740 3.399330 AGACCACGACGACATGAAAATT 58.601 40.909 0.00 0.00 0.00 1.82
3846 5741 3.813166 AGACCACGACGACATGAAAATTT 59.187 39.130 0.00 0.00 0.00 1.82
3847 5742 3.884169 ACCACGACGACATGAAAATTTG 58.116 40.909 0.00 0.00 0.00 2.32
3848 5743 3.233578 CCACGACGACATGAAAATTTGG 58.766 45.455 0.00 0.00 0.00 3.28
3849 5744 2.656422 CACGACGACATGAAAATTTGGC 59.344 45.455 0.00 0.00 0.00 4.52
3850 5745 2.292016 ACGACGACATGAAAATTTGGCA 59.708 40.909 0.00 0.00 0.00 4.92
3851 5746 3.057596 ACGACGACATGAAAATTTGGCAT 60.058 39.130 0.00 0.00 0.00 4.40
3852 5747 3.919804 CGACGACATGAAAATTTGGCATT 59.080 39.130 0.00 0.00 0.00 3.56
3853 5748 4.201513 CGACGACATGAAAATTTGGCATTG 60.202 41.667 0.00 4.25 0.00 2.82
3854 5749 4.880759 ACGACATGAAAATTTGGCATTGA 58.119 34.783 0.00 0.00 0.00 2.57
3855 5750 5.481105 ACGACATGAAAATTTGGCATTGAT 58.519 33.333 0.00 0.00 0.00 2.57
3856 5751 6.629128 ACGACATGAAAATTTGGCATTGATA 58.371 32.000 0.00 0.00 0.00 2.15
3857 5752 6.531240 ACGACATGAAAATTTGGCATTGATAC 59.469 34.615 0.00 0.00 0.00 2.24
3858 5753 6.291217 CGACATGAAAATTTGGCATTGATACG 60.291 38.462 0.00 0.00 0.00 3.06
3859 5754 6.397272 ACATGAAAATTTGGCATTGATACGT 58.603 32.000 0.00 0.00 0.00 3.57
3860 5755 7.542890 ACATGAAAATTTGGCATTGATACGTA 58.457 30.769 0.00 0.00 0.00 3.57
3861 5756 7.701924 ACATGAAAATTTGGCATTGATACGTAG 59.298 33.333 0.00 0.00 0.00 3.51
3862 5757 6.559810 TGAAAATTTGGCATTGATACGTAGG 58.440 36.000 0.08 0.00 0.00 3.18
3863 5758 5.514274 AAATTTGGCATTGATACGTAGGG 57.486 39.130 0.08 0.00 0.00 3.53
3864 5759 3.637911 TTTGGCATTGATACGTAGGGT 57.362 42.857 0.08 0.00 0.00 4.34
3865 5760 3.637911 TTGGCATTGATACGTAGGGTT 57.362 42.857 0.08 0.00 0.00 4.11
3866 5761 4.757019 TTGGCATTGATACGTAGGGTTA 57.243 40.909 0.08 0.00 0.00 2.85
3867 5762 4.330944 TGGCATTGATACGTAGGGTTAG 57.669 45.455 0.08 0.00 0.00 2.34
3868 5763 3.962063 TGGCATTGATACGTAGGGTTAGA 59.038 43.478 0.08 0.00 0.00 2.10
3869 5764 4.038763 TGGCATTGATACGTAGGGTTAGAG 59.961 45.833 0.08 0.00 0.00 2.43
3870 5765 4.557205 GCATTGATACGTAGGGTTAGAGG 58.443 47.826 0.08 0.00 0.00 3.69
3871 5766 4.557205 CATTGATACGTAGGGTTAGAGGC 58.443 47.826 0.08 0.00 0.00 4.70
3872 5767 2.590821 TGATACGTAGGGTTAGAGGCC 58.409 52.381 0.08 0.00 0.00 5.19
3873 5768 2.091720 TGATACGTAGGGTTAGAGGCCA 60.092 50.000 5.01 0.00 0.00 5.36
3874 5769 1.767759 TACGTAGGGTTAGAGGCCAC 58.232 55.000 5.01 0.00 0.00 5.01
3875 5770 0.974525 ACGTAGGGTTAGAGGCCACC 60.975 60.000 5.01 2.78 0.00 4.61
3876 5771 0.686769 CGTAGGGTTAGAGGCCACCT 60.687 60.000 5.01 3.86 36.03 4.00
3877 5772 0.831307 GTAGGGTTAGAGGCCACCTG 59.169 60.000 5.01 0.00 31.76 4.00
3878 5773 0.416231 TAGGGTTAGAGGCCACCTGT 59.584 55.000 5.01 0.00 31.76 4.00
3879 5774 0.910088 AGGGTTAGAGGCCACCTGTC 60.910 60.000 5.01 0.00 31.76 3.51
3880 5775 1.198759 GGGTTAGAGGCCACCTGTCA 61.199 60.000 5.01 0.00 31.76 3.58
3881 5776 0.690762 GGTTAGAGGCCACCTGTCAA 59.309 55.000 5.01 0.00 31.76 3.18
3882 5777 1.282157 GGTTAGAGGCCACCTGTCAAT 59.718 52.381 5.01 0.00 31.76 2.57
3883 5778 2.359900 GTTAGAGGCCACCTGTCAATG 58.640 52.381 5.01 0.00 31.76 2.82
3884 5779 1.951209 TAGAGGCCACCTGTCAATGA 58.049 50.000 5.01 0.00 31.76 2.57
3885 5780 0.326264 AGAGGCCACCTGTCAATGAC 59.674 55.000 5.01 6.41 31.76 3.06
3886 5781 0.036732 GAGGCCACCTGTCAATGACA 59.963 55.000 15.88 15.88 40.50 3.58
3895 5790 1.728323 TGTCAATGACAGGGAGTGGA 58.272 50.000 12.63 0.00 37.67 4.02
3896 5791 2.054021 TGTCAATGACAGGGAGTGGAA 58.946 47.619 12.63 0.00 37.67 3.53
3897 5792 2.644299 TGTCAATGACAGGGAGTGGAAT 59.356 45.455 12.63 0.00 37.67 3.01
3898 5793 3.843619 TGTCAATGACAGGGAGTGGAATA 59.156 43.478 12.63 0.00 37.67 1.75
3899 5794 4.192317 GTCAATGACAGGGAGTGGAATAC 58.808 47.826 8.74 0.00 32.09 1.89
3900 5795 4.080863 GTCAATGACAGGGAGTGGAATACT 60.081 45.833 8.74 0.00 35.90 2.12
3901 5796 4.536090 TCAATGACAGGGAGTGGAATACTT 59.464 41.667 0.00 0.00 40.53 2.24
3902 5797 3.981071 TGACAGGGAGTGGAATACTTG 57.019 47.619 0.00 0.00 40.53 3.16
3903 5798 2.571653 TGACAGGGAGTGGAATACTTGG 59.428 50.000 0.00 0.00 40.53 3.61
3904 5799 1.916181 ACAGGGAGTGGAATACTTGGG 59.084 52.381 0.00 0.00 40.53 4.12
3905 5800 1.916181 CAGGGAGTGGAATACTTGGGT 59.084 52.381 0.00 0.00 40.53 4.51
3906 5801 3.112263 CAGGGAGTGGAATACTTGGGTA 58.888 50.000 0.00 0.00 40.53 3.69
3907 5802 3.521937 CAGGGAGTGGAATACTTGGGTAA 59.478 47.826 0.00 0.00 40.53 2.85
3908 5803 4.018779 CAGGGAGTGGAATACTTGGGTAAA 60.019 45.833 0.00 0.00 40.53 2.01
3909 5804 4.604490 AGGGAGTGGAATACTTGGGTAAAA 59.396 41.667 0.00 0.00 40.53 1.52
3910 5805 5.075344 AGGGAGTGGAATACTTGGGTAAAAA 59.925 40.000 0.00 0.00 40.53 1.94
3929 5824 5.482686 AAAAATGCAACCAAATGTGTGTC 57.517 34.783 0.00 0.00 0.00 3.67
3930 5825 2.818130 ATGCAACCAAATGTGTGTCC 57.182 45.000 0.00 0.00 0.00 4.02
3931 5826 1.478631 TGCAACCAAATGTGTGTCCA 58.521 45.000 0.00 0.00 0.00 4.02
3932 5827 2.037901 TGCAACCAAATGTGTGTCCAT 58.962 42.857 0.00 0.00 0.00 3.41
3933 5828 2.433604 TGCAACCAAATGTGTGTCCATT 59.566 40.909 0.00 0.00 36.62 3.16
3934 5829 3.118482 TGCAACCAAATGTGTGTCCATTT 60.118 39.130 0.00 0.00 43.89 2.32
3943 5838 7.862512 AAATGTGTGTCCATTTGTCAAAATT 57.137 28.000 1.31 0.00 42.04 1.82
3944 5839 7.862512 AATGTGTGTCCATTTGTCAAAATTT 57.137 28.000 1.31 0.00 33.59 1.82
3945 5840 8.954950 AATGTGTGTCCATTTGTCAAAATTTA 57.045 26.923 1.31 0.00 33.59 1.40
3958 5853 6.245408 TGTCAAAATTTATGCTGGTACTCCT 58.755 36.000 0.00 0.00 34.23 3.69
3962 5857 8.494433 TCAAAATTTATGCTGGTACTCCTCTAT 58.506 33.333 0.00 0.00 34.23 1.98
3963 5858 9.125026 CAAAATTTATGCTGGTACTCCTCTATT 57.875 33.333 0.00 0.00 34.23 1.73
3964 5859 8.910351 AAATTTATGCTGGTACTCCTCTATTC 57.090 34.615 0.00 0.00 34.23 1.75
3969 5864 6.014771 TGCTGGTACTCCTCTATTCTTCTA 57.985 41.667 0.00 0.00 34.23 2.10
3970 5865 6.065374 TGCTGGTACTCCTCTATTCTTCTAG 58.935 44.000 0.00 0.00 34.23 2.43
3988 5883 6.771267 TCTTCTAGTACAGTTGTTCTGACAGA 59.229 38.462 0.00 0.00 46.27 3.41
3989 5884 6.561737 TCTAGTACAGTTGTTCTGACAGAG 57.438 41.667 5.10 0.00 46.27 3.35
4037 5932 6.373779 GGAGCATCGATATTTTACCACATTG 58.626 40.000 0.00 0.00 34.37 2.82
4042 5937 8.677300 GCATCGATATTTTACCACATTGGATAT 58.323 33.333 0.00 0.00 40.96 1.63
4081 5988 8.352137 TCAGATTCTGCTGGAAATTAAATCAA 57.648 30.769 8.89 0.00 37.49 2.57
4084 5991 9.595823 AGATTCTGCTGGAAATTAAATCAAATG 57.404 29.630 0.00 0.00 37.49 2.32
4085 5992 9.590451 GATTCTGCTGGAAATTAAATCAAATGA 57.410 29.630 0.00 0.00 37.49 2.57
4092 5999 8.991243 TGGAAATTAAATCAAATGAGCAAGAG 57.009 30.769 0.00 0.00 0.00 2.85
4097 6004 2.119801 TCAAATGAGCAAGAGAGGCC 57.880 50.000 0.00 0.00 0.00 5.19
4098 6005 1.352017 TCAAATGAGCAAGAGAGGCCA 59.648 47.619 5.01 0.00 0.00 5.36
4117 6035 0.769247 ACCCAACTCCCAACCACTAC 59.231 55.000 0.00 0.00 0.00 2.73
4118 6036 1.064825 CCCAACTCCCAACCACTACT 58.935 55.000 0.00 0.00 0.00 2.57
4119 6037 2.262637 CCCAACTCCCAACCACTACTA 58.737 52.381 0.00 0.00 0.00 1.82
4121 6039 3.307480 CCCAACTCCCAACCACTACTAAG 60.307 52.174 0.00 0.00 0.00 2.18
4122 6040 3.326880 CCAACTCCCAACCACTACTAAGT 59.673 47.826 0.00 0.00 35.91 2.24
4123 6041 4.202430 CCAACTCCCAACCACTACTAAGTT 60.202 45.833 0.00 0.00 31.97 2.66
4124 6042 5.012354 CCAACTCCCAACCACTACTAAGTTA 59.988 44.000 0.00 0.00 31.97 2.24
4125 6043 5.735285 ACTCCCAACCACTACTAAGTTAC 57.265 43.478 0.00 0.00 31.97 2.50
4126 6044 5.400870 ACTCCCAACCACTACTAAGTTACT 58.599 41.667 0.00 0.00 31.97 2.24
4127 6045 6.555711 ACTCCCAACCACTACTAAGTTACTA 58.444 40.000 0.00 0.00 31.97 1.82
4128 6046 7.012607 ACTCCCAACCACTACTAAGTTACTAA 58.987 38.462 0.00 0.00 31.97 2.24
4129 6047 7.039434 ACTCCCAACCACTACTAAGTTACTAAC 60.039 40.741 0.00 0.00 31.97 2.34
4130 6048 6.211384 TCCCAACCACTACTAAGTTACTAACC 59.789 42.308 0.00 0.00 31.97 2.85
4131 6049 6.014327 CCCAACCACTACTAAGTTACTAACCA 60.014 42.308 0.00 0.00 31.97 3.67
4132 6050 7.310858 CCCAACCACTACTAAGTTACTAACCAT 60.311 40.741 0.00 0.00 31.97 3.55
4133 6051 7.548075 CCAACCACTACTAAGTTACTAACCATG 59.452 40.741 0.00 0.00 31.97 3.66
4134 6052 7.179076 ACCACTACTAAGTTACTAACCATGG 57.821 40.000 11.19 11.19 31.97 3.66
4135 6053 6.955851 ACCACTACTAAGTTACTAACCATGGA 59.044 38.462 21.47 0.00 31.97 3.41
4136 6054 7.123847 ACCACTACTAAGTTACTAACCATGGAG 59.876 40.741 21.47 9.06 31.97 3.86
4156 6074 1.433879 GAGATGGAGACCACGACGG 59.566 63.158 0.00 0.00 35.80 4.79
4157 6075 2.202756 GATGGAGACCACGACGGC 60.203 66.667 0.00 0.00 35.80 5.68
4158 6076 2.994995 ATGGAGACCACGACGGCA 60.995 61.111 0.00 0.00 35.80 5.69
4159 6077 2.298158 GATGGAGACCACGACGGCAT 62.298 60.000 0.00 0.00 35.80 4.40
4160 6078 2.509336 GGAGACCACGACGGCATG 60.509 66.667 0.00 0.00 39.03 4.06
4163 6081 0.669318 GAGACCACGACGGCATGAAA 60.669 55.000 0.00 0.00 39.03 2.69
4191 6109 0.394762 TGATGAGAAGCCATGCCCAC 60.395 55.000 0.00 0.00 0.00 4.61
4192 6110 0.106819 GATGAGAAGCCATGCCCACT 60.107 55.000 0.00 0.00 0.00 4.00
4193 6111 0.333993 ATGAGAAGCCATGCCCACTT 59.666 50.000 0.00 0.00 0.00 3.16
4194 6112 0.609957 TGAGAAGCCATGCCCACTTG 60.610 55.000 0.00 0.00 0.00 3.16
4253 6183 5.359009 GGACCAGATCACACATTTCATCAAT 59.641 40.000 0.00 0.00 0.00 2.57
4269 6212 9.814899 ATTTCATCAATGTACAAGTCAACAAAA 57.185 25.926 0.00 0.00 0.00 2.44
4282 6225 7.042791 ACAAGTCAACAAAATCTTTTATTGCGG 60.043 33.333 2.33 0.78 35.23 5.69
4292 6235 0.448593 TTTATTGCGGCCGTACTTGC 59.551 50.000 28.70 9.31 0.00 4.01
4313 6260 4.555709 GGCCACGGACCACACACA 62.556 66.667 0.00 0.00 0.00 3.72
4314 6261 3.276846 GCCACGGACCACACACAC 61.277 66.667 0.00 0.00 0.00 3.82
4315 6262 2.590575 CCACGGACCACACACACC 60.591 66.667 0.00 0.00 0.00 4.16
4316 6263 2.188207 CACGGACCACACACACCA 59.812 61.111 0.00 0.00 0.00 4.17
4327 6290 3.663176 CACACCAAGCACGCCCTG 61.663 66.667 0.00 0.00 0.00 4.45
4336 6299 2.903855 CACGCCCTGCCCATGATC 60.904 66.667 0.00 0.00 0.00 2.92
4337 6300 4.195334 ACGCCCTGCCCATGATCC 62.195 66.667 0.00 0.00 0.00 3.36
4338 6301 4.193893 CGCCCTGCCCATGATCCA 62.194 66.667 0.00 0.00 0.00 3.41
4339 6302 2.524559 GCCCTGCCCATGATCCAT 59.475 61.111 0.00 0.00 0.00 3.41
4340 6303 1.906824 GCCCTGCCCATGATCCATG 60.907 63.158 0.00 0.00 41.10 3.66
4341 6304 1.848400 CCCTGCCCATGATCCATGA 59.152 57.895 8.38 0.00 43.81 3.07
4342 6305 0.408309 CCCTGCCCATGATCCATGAT 59.592 55.000 8.38 0.00 43.81 2.45
4364 6337 3.586174 TCCATGATTGATCCATCTCTCCC 59.414 47.826 8.16 0.00 0.00 4.30
4369 6342 3.920231 TTGATCCATCTCTCCCAACAG 57.080 47.619 0.00 0.00 0.00 3.16
4372 6345 2.342406 TCCATCTCTCCCAACAGGAA 57.658 50.000 0.00 0.00 46.94 3.36
4373 6346 1.909302 TCCATCTCTCCCAACAGGAAC 59.091 52.381 0.00 0.00 46.94 3.62
4374 6347 1.406069 CCATCTCTCCCAACAGGAACG 60.406 57.143 0.00 0.00 46.94 3.95
4375 6348 1.550524 CATCTCTCCCAACAGGAACGA 59.449 52.381 0.00 0.00 46.94 3.85
4389 6362 2.758770 GAACGACGCACCTGCCTGTA 62.759 60.000 0.00 0.00 37.91 2.74
4390 6363 2.809601 CGACGCACCTGCCTGTAC 60.810 66.667 0.00 0.00 37.91 2.90
4392 6365 2.923035 ACGCACCTGCCTGTACCT 60.923 61.111 0.00 0.00 37.91 3.08
4393 6366 2.434884 CGCACCTGCCTGTACCTG 60.435 66.667 0.00 0.00 37.91 4.00
4394 6367 2.942796 CGCACCTGCCTGTACCTGA 61.943 63.158 0.00 0.00 37.91 3.86
4395 6368 1.376037 GCACCTGCCTGTACCTGAC 60.376 63.158 0.00 0.00 34.31 3.51
4396 6369 1.831652 GCACCTGCCTGTACCTGACT 61.832 60.000 0.00 0.00 34.31 3.41
4442 6415 3.050835 ACCCAACCACTAACCAACTACT 58.949 45.455 0.00 0.00 0.00 2.57
4443 6416 3.181448 ACCCAACCACTAACCAACTACTG 60.181 47.826 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.519540 ACAGCTGTTCTTTGTTGTGTTT 57.480 36.364 15.25 0.00 0.00 2.83
41 42 5.398603 TGTTGGCTGAGAAAGTTTGAAAA 57.601 34.783 0.00 0.00 0.00 2.29
144 145 2.043852 TCCTCGTCTCCTGGCCTC 60.044 66.667 3.32 0.00 0.00 4.70
164 691 2.348971 GCTCGACGGGAAAATTTCTCTC 59.651 50.000 0.00 0.38 0.00 3.20
265 794 4.020617 CGCAGGGGAGAAGTGGCA 62.021 66.667 0.00 0.00 0.00 4.92
294 823 2.489073 GCAAAGAACTGGAAAGGGGAGA 60.489 50.000 0.00 0.00 0.00 3.71
295 824 1.889170 GCAAAGAACTGGAAAGGGGAG 59.111 52.381 0.00 0.00 0.00 4.30
296 825 1.499007 AGCAAAGAACTGGAAAGGGGA 59.501 47.619 0.00 0.00 0.00 4.81
297 826 2.001076 AGCAAAGAACTGGAAAGGGG 57.999 50.000 0.00 0.00 0.00 4.79
298 827 2.297315 GGAAGCAAAGAACTGGAAAGGG 59.703 50.000 0.00 0.00 0.00 3.95
299 828 2.958355 TGGAAGCAAAGAACTGGAAAGG 59.042 45.455 0.00 0.00 0.00 3.11
330 878 1.140252 AGGTAAATGGATCGGGGAACG 59.860 52.381 0.00 0.00 46.11 3.95
350 898 2.032528 CGAAGGAACAGGCAGGCA 59.967 61.111 0.00 0.00 0.00 4.75
352 900 2.846371 CTTCGAAGGAACAGGCAGG 58.154 57.895 17.70 0.00 0.00 4.85
383 931 3.645434 TGAATGATGAATCCTTTGGGGG 58.355 45.455 0.00 0.00 35.33 5.40
793 1650 2.289133 TGCGAACATACACAGTAGCCAA 60.289 45.455 0.00 0.00 0.00 4.52
800 1657 8.604035 ACTAAATCTAAATGCGAACATACACAG 58.396 33.333 0.00 0.00 34.62 3.66
864 2410 5.078411 TCAGCTAGAGATCTGACCAAAAC 57.922 43.478 0.00 0.00 34.69 2.43
865 2411 5.337894 CCTTCAGCTAGAGATCTGACCAAAA 60.338 44.000 0.00 0.00 38.87 2.44
920 2586 7.979444 AAGAATCGAAATTGTTGGAGAACTA 57.021 32.000 0.00 0.00 32.79 2.24
932 2598 5.897377 AATCGGACCAAAGAATCGAAATT 57.103 34.783 0.00 0.00 33.53 1.82
950 2616 7.398746 TCTGCGTCAAATAATCAGTTAAATCG 58.601 34.615 0.00 0.00 0.00 3.34
988 2654 1.009997 ATCCCCATTCTTGGCTTCCA 58.990 50.000 0.00 0.00 42.15 3.53
1023 2689 0.250234 TGACGATGCTTAGCTGCCTT 59.750 50.000 5.60 0.00 0.00 4.35
1046 2712 0.749649 CTGATCCTCCTCCTTCACCG 59.250 60.000 0.00 0.00 0.00 4.94
1100 2778 6.002704 GGATAAGAACTTGCATCTGGATGAT 58.997 40.000 13.96 0.00 41.20 2.45
1101 2779 5.104402 TGGATAAGAACTTGCATCTGGATGA 60.104 40.000 13.96 0.00 41.20 2.92
1102 2780 5.128205 TGGATAAGAACTTGCATCTGGATG 58.872 41.667 6.24 6.24 41.60 3.51
1103 2781 5.378230 TGGATAAGAACTTGCATCTGGAT 57.622 39.130 0.00 0.00 0.00 3.41
1104 2782 4.842531 TGGATAAGAACTTGCATCTGGA 57.157 40.909 0.00 0.00 0.00 3.86
1105 2783 5.374921 AGATGGATAAGAACTTGCATCTGG 58.625 41.667 6.19 0.00 45.64 3.86
1108 2786 6.317140 TCAACAGATGGATAAGAACTTGCATC 59.683 38.462 0.00 0.00 39.98 3.91
1109 2787 6.094603 GTCAACAGATGGATAAGAACTTGCAT 59.905 38.462 0.00 0.00 0.00 3.96
1110 2788 5.412594 GTCAACAGATGGATAAGAACTTGCA 59.587 40.000 0.00 0.00 0.00 4.08
1111 2789 5.163713 GGTCAACAGATGGATAAGAACTTGC 60.164 44.000 0.00 0.00 0.00 4.01
1119 2797 4.626287 GCCTCAAGGTCAACAGATGGATAA 60.626 45.833 0.00 0.00 37.57 1.75
1143 2821 3.800628 CGATGCATCGCTATCCTCA 57.199 52.632 33.70 0.00 43.84 3.86
1429 3113 0.623723 GGCCTTAACATCCCACCAGA 59.376 55.000 0.00 0.00 0.00 3.86
1439 3123 4.324254 CCTCAATCTGGTAAGGCCTTAACA 60.324 45.833 35.35 35.35 40.14 2.41
1445 3129 0.919710 ACCCTCAATCTGGTAAGGCC 59.080 55.000 0.00 0.00 31.61 5.19
1494 3178 3.322862 TGCTAGTATCCCATTTAGCCCA 58.677 45.455 0.00 0.00 38.14 5.36
1726 3410 7.332926 CCATAGTAAATCAGACATGCCATAGAC 59.667 40.741 0.00 0.00 0.00 2.59
2060 3745 1.239347 GTGTCCCAGTCAAAAGGAGC 58.761 55.000 0.00 0.00 0.00 4.70
2073 3758 5.738619 AGGTTATTTTGAAATGGTGTCCC 57.261 39.130 0.00 0.00 0.00 4.46
2133 3818 8.937884 CAATTCCTGATGAGATGAGAATATGTC 58.062 37.037 0.00 0.00 0.00 3.06
2205 3890 5.105554 GGTATGTTGGCATGTACAAAATGGA 60.106 40.000 14.48 0.00 36.58 3.41
2247 3932 5.471456 ACACATGAAGTTGAGAAGTGATTCC 59.529 40.000 0.00 0.00 0.00 3.01
2276 3961 1.134995 CAAGGCAGCGATCAGTCACTA 60.135 52.381 0.00 0.00 0.00 2.74
2730 4522 9.467258 CAAAATTCGCCATGATAGACATTTTAT 57.533 29.630 0.00 0.00 37.07 1.40
2836 4714 2.031163 AGACAAGCGGAGGCACAC 59.969 61.111 0.00 0.00 43.41 3.82
2845 4723 2.549754 AGGAATTGTTGTCAGACAAGCG 59.450 45.455 16.68 0.00 42.28 4.68
2851 4729 7.060421 ACCTTTAAAGAGGAATTGTTGTCAGA 58.940 34.615 16.98 0.00 39.25 3.27
2854 4732 8.194769 TCAAACCTTTAAAGAGGAATTGTTGTC 58.805 33.333 16.98 0.00 39.25 3.18
2877 4755 7.170393 TCACCTCTTTTCTCGATAAGATCAA 57.830 36.000 0.00 0.00 32.82 2.57
2882 4763 4.402793 TCCCTCACCTCTTTTCTCGATAAG 59.597 45.833 0.00 0.00 0.00 1.73
2886 4767 1.893801 GTCCCTCACCTCTTTTCTCGA 59.106 52.381 0.00 0.00 0.00 4.04
2887 4768 1.618837 TGTCCCTCACCTCTTTTCTCG 59.381 52.381 0.00 0.00 0.00 4.04
2889 4770 3.318313 TCTTGTCCCTCACCTCTTTTCT 58.682 45.455 0.00 0.00 0.00 2.52
2909 4790 6.935208 ACCCTTCTGTTGACTATAGTTTGTTC 59.065 38.462 6.88 0.00 0.00 3.18
2953 4837 1.721487 GAATGGATCCAACGCGGTG 59.279 57.895 20.67 19.45 35.57 4.94
2982 4866 5.674525 CCTTGTAGCACATAGAATCTTCCA 58.325 41.667 0.00 0.00 0.00 3.53
2988 4872 3.931907 TGGCCTTGTAGCACATAGAAT 57.068 42.857 3.32 0.00 0.00 2.40
2990 4874 3.609853 CTTTGGCCTTGTAGCACATAGA 58.390 45.455 3.32 0.00 0.00 1.98
3023 4907 1.407299 CGAGAGGTGGATTGCATTCCA 60.407 52.381 23.27 23.27 43.56 3.53
3084 4968 2.450476 CTGCTGCCCCTTTACAATTCT 58.550 47.619 0.00 0.00 0.00 2.40
3090 4974 1.002134 TCTGCTGCTGCCCCTTTAC 60.002 57.895 13.47 0.00 38.71 2.01
3092 4976 2.035312 CTCTGCTGCTGCCCCTTT 59.965 61.111 13.47 0.00 38.71 3.11
3113 4997 2.559698 TCACCGCCATTTTCAGAAGA 57.440 45.000 0.00 0.00 0.00 2.87
3231 5115 0.963962 AGCTTGAACTGTGCCATTGG 59.036 50.000 0.00 0.00 0.00 3.16
3290 5174 2.556114 CCAAGATTTCTGCAGGGGAAGT 60.556 50.000 15.13 0.00 0.00 3.01
3595 5490 3.996150 AATCGACAATGCATCAATCCC 57.004 42.857 0.00 0.00 0.00 3.85
3596 5491 4.293415 GGAAATCGACAATGCATCAATCC 58.707 43.478 0.00 0.00 0.00 3.01
3600 5495 2.355197 ACGGAAATCGACAATGCATCA 58.645 42.857 0.00 0.00 42.43 3.07
3606 5501 2.731968 GCATGCAACGGAAATCGACAAT 60.732 45.455 14.21 0.00 42.43 2.71
3635 5530 1.806542 AGTGGCACATGACGAATCAAC 59.193 47.619 21.41 0.00 44.52 3.18
3670 5565 2.730604 CCGCCAAGCAAGCAAACG 60.731 61.111 0.00 0.00 0.00 3.60
3735 5630 5.801350 TGCTCATCTCGTTTAATTTCCAG 57.199 39.130 0.00 0.00 0.00 3.86
3736 5631 5.937540 TCTTGCTCATCTCGTTTAATTTCCA 59.062 36.000 0.00 0.00 0.00 3.53
3737 5632 6.422776 TCTTGCTCATCTCGTTTAATTTCC 57.577 37.500 0.00 0.00 0.00 3.13
3739 5634 7.254932 GCCTATCTTGCTCATCTCGTTTAATTT 60.255 37.037 0.00 0.00 0.00 1.82
3740 5635 6.203723 GCCTATCTTGCTCATCTCGTTTAATT 59.796 38.462 0.00 0.00 0.00 1.40
3741 5636 5.698545 GCCTATCTTGCTCATCTCGTTTAAT 59.301 40.000 0.00 0.00 0.00 1.40
3742 5637 5.050490 GCCTATCTTGCTCATCTCGTTTAA 58.950 41.667 0.00 0.00 0.00 1.52
3743 5638 4.501571 GGCCTATCTTGCTCATCTCGTTTA 60.502 45.833 0.00 0.00 0.00 2.01
3744 5639 3.462021 GCCTATCTTGCTCATCTCGTTT 58.538 45.455 0.00 0.00 0.00 3.60
3745 5640 2.224161 GGCCTATCTTGCTCATCTCGTT 60.224 50.000 0.00 0.00 0.00 3.85
3746 5641 1.342819 GGCCTATCTTGCTCATCTCGT 59.657 52.381 0.00 0.00 0.00 4.18
3747 5642 1.668337 CGGCCTATCTTGCTCATCTCG 60.668 57.143 0.00 0.00 0.00 4.04
3748 5643 1.938926 GCGGCCTATCTTGCTCATCTC 60.939 57.143 0.00 0.00 0.00 2.75
3749 5644 0.034616 GCGGCCTATCTTGCTCATCT 59.965 55.000 0.00 0.00 0.00 2.90
3750 5645 0.952984 GGCGGCCTATCTTGCTCATC 60.953 60.000 12.87 0.00 0.00 2.92
3751 5646 1.072159 GGCGGCCTATCTTGCTCAT 59.928 57.895 12.87 0.00 0.00 2.90
3752 5647 2.505982 GGCGGCCTATCTTGCTCA 59.494 61.111 12.87 0.00 0.00 4.26
3753 5648 2.281139 GGGCGGCCTATCTTGCTC 60.281 66.667 22.87 0.00 0.00 4.26
3754 5649 3.878667 GGGGCGGCCTATCTTGCT 61.879 66.667 28.80 0.00 0.00 3.91
3755 5650 4.956932 GGGGGCGGCCTATCTTGC 62.957 72.222 28.80 8.91 0.00 4.01
3756 5651 4.626081 CGGGGGCGGCCTATCTTG 62.626 72.222 28.80 7.58 0.00 3.02
3768 5663 3.289583 TTGGGTGGTAATGCGGGGG 62.290 63.158 0.00 0.00 0.00 5.40
3769 5664 2.049767 GTTGGGTGGTAATGCGGGG 61.050 63.158 0.00 0.00 0.00 5.73
3770 5665 1.001393 AGTTGGGTGGTAATGCGGG 60.001 57.895 0.00 0.00 0.00 6.13
3771 5666 1.029947 GGAGTTGGGTGGTAATGCGG 61.030 60.000 0.00 0.00 0.00 5.69
3772 5667 1.029947 GGGAGTTGGGTGGTAATGCG 61.030 60.000 0.00 0.00 0.00 4.73
3773 5668 0.039035 TGGGAGTTGGGTGGTAATGC 59.961 55.000 0.00 0.00 0.00 3.56
3774 5669 2.167662 GTTGGGAGTTGGGTGGTAATG 58.832 52.381 0.00 0.00 0.00 1.90
3775 5670 1.076513 GGTTGGGAGTTGGGTGGTAAT 59.923 52.381 0.00 0.00 0.00 1.89
3776 5671 0.479378 GGTTGGGAGTTGGGTGGTAA 59.521 55.000 0.00 0.00 0.00 2.85
3777 5672 0.698198 TGGTTGGGAGTTGGGTGGTA 60.698 55.000 0.00 0.00 0.00 3.25
3778 5673 2.009882 TGGTTGGGAGTTGGGTGGT 61.010 57.895 0.00 0.00 0.00 4.16
3779 5674 1.530655 GTGGTTGGGAGTTGGGTGG 60.531 63.158 0.00 0.00 0.00 4.61
3780 5675 0.768622 TAGTGGTTGGGAGTTGGGTG 59.231 55.000 0.00 0.00 0.00 4.61
3781 5676 1.144298 GTTAGTGGTTGGGAGTTGGGT 59.856 52.381 0.00 0.00 0.00 4.51
3782 5677 1.423921 AGTTAGTGGTTGGGAGTTGGG 59.576 52.381 0.00 0.00 0.00 4.12
3783 5678 2.951229 AGTTAGTGGTTGGGAGTTGG 57.049 50.000 0.00 0.00 0.00 3.77
3784 5679 4.070009 GGTTAGTTAGTGGTTGGGAGTTG 58.930 47.826 0.00 0.00 0.00 3.16
3785 5680 3.717913 TGGTTAGTTAGTGGTTGGGAGTT 59.282 43.478 0.00 0.00 0.00 3.01
3786 5681 3.320129 TGGTTAGTTAGTGGTTGGGAGT 58.680 45.455 0.00 0.00 0.00 3.85
3787 5682 4.261801 CATGGTTAGTTAGTGGTTGGGAG 58.738 47.826 0.00 0.00 0.00 4.30
3788 5683 3.009695 CCATGGTTAGTTAGTGGTTGGGA 59.990 47.826 2.57 0.00 0.00 4.37
3789 5684 3.009695 TCCATGGTTAGTTAGTGGTTGGG 59.990 47.826 12.58 0.00 0.00 4.12
3790 5685 4.019681 TCTCCATGGTTAGTTAGTGGTTGG 60.020 45.833 12.58 0.00 0.00 3.77
3791 5686 5.160607 TCTCCATGGTTAGTTAGTGGTTG 57.839 43.478 12.58 0.00 0.00 3.77
3792 5687 6.180472 CAATCTCCATGGTTAGTTAGTGGTT 58.820 40.000 12.58 0.00 0.00 3.67
3793 5688 5.339200 CCAATCTCCATGGTTAGTTAGTGGT 60.339 44.000 12.58 0.00 33.08 4.16
3794 5689 5.104527 TCCAATCTCCATGGTTAGTTAGTGG 60.105 44.000 12.58 10.50 39.09 4.00
3795 5690 5.989477 TCCAATCTCCATGGTTAGTTAGTG 58.011 41.667 12.58 1.96 39.09 2.74
3796 5691 5.964477 TCTCCAATCTCCATGGTTAGTTAGT 59.036 40.000 12.58 0.00 39.09 2.24
3797 5692 6.485830 TCTCCAATCTCCATGGTTAGTTAG 57.514 41.667 12.58 0.00 39.09 2.34
3798 5693 6.183361 CCATCTCCAATCTCCATGGTTAGTTA 60.183 42.308 12.58 0.00 39.09 2.24
3799 5694 5.398353 CCATCTCCAATCTCCATGGTTAGTT 60.398 44.000 12.58 0.17 39.09 2.24
3800 5695 4.103785 CCATCTCCAATCTCCATGGTTAGT 59.896 45.833 12.58 0.00 39.09 2.24
3801 5696 4.349048 TCCATCTCCAATCTCCATGGTTAG 59.651 45.833 12.58 2.42 39.09 2.34
3802 5697 4.306391 TCCATCTCCAATCTCCATGGTTA 58.694 43.478 12.58 0.94 39.09 2.85
3803 5698 3.125656 TCCATCTCCAATCTCCATGGTT 58.874 45.455 12.58 0.00 39.09 3.67
3804 5699 2.709934 CTCCATCTCCAATCTCCATGGT 59.290 50.000 12.58 0.00 39.09 3.55
3805 5700 2.977580 TCTCCATCTCCAATCTCCATGG 59.022 50.000 4.97 4.97 39.41 3.66
3806 5701 3.244491 GGTCTCCATCTCCAATCTCCATG 60.244 52.174 0.00 0.00 0.00 3.66
3807 5702 2.978278 GGTCTCCATCTCCAATCTCCAT 59.022 50.000 0.00 0.00 0.00 3.41
3808 5703 2.293118 TGGTCTCCATCTCCAATCTCCA 60.293 50.000 0.00 0.00 0.00 3.86
3809 5704 2.103941 GTGGTCTCCATCTCCAATCTCC 59.896 54.545 0.00 0.00 35.28 3.71
3810 5705 2.223923 CGTGGTCTCCATCTCCAATCTC 60.224 54.545 0.00 0.00 35.28 2.75
3811 5706 1.759445 CGTGGTCTCCATCTCCAATCT 59.241 52.381 0.00 0.00 35.28 2.40
3812 5707 1.757118 TCGTGGTCTCCATCTCCAATC 59.243 52.381 0.00 0.00 35.28 2.67
3813 5708 1.482593 GTCGTGGTCTCCATCTCCAAT 59.517 52.381 0.00 0.00 35.28 3.16
3814 5709 0.895530 GTCGTGGTCTCCATCTCCAA 59.104 55.000 0.00 0.00 35.28 3.53
3815 5710 1.313091 CGTCGTGGTCTCCATCTCCA 61.313 60.000 0.00 0.00 35.28 3.86
3816 5711 1.030488 TCGTCGTGGTCTCCATCTCC 61.030 60.000 0.00 0.00 35.28 3.71
3817 5712 0.099082 GTCGTCGTGGTCTCCATCTC 59.901 60.000 0.00 0.00 35.28 2.75
3818 5713 0.608308 TGTCGTCGTGGTCTCCATCT 60.608 55.000 0.00 0.00 35.28 2.90
3819 5714 0.456221 ATGTCGTCGTGGTCTCCATC 59.544 55.000 0.00 0.00 35.28 3.51
3820 5715 0.173481 CATGTCGTCGTGGTCTCCAT 59.827 55.000 0.00 0.00 35.28 3.41
3821 5716 0.891904 TCATGTCGTCGTGGTCTCCA 60.892 55.000 2.05 0.00 0.00 3.86
3822 5717 0.242825 TTCATGTCGTCGTGGTCTCC 59.757 55.000 2.05 0.00 0.00 3.71
3823 5718 2.060326 TTTCATGTCGTCGTGGTCTC 57.940 50.000 2.05 0.00 0.00 3.36
3824 5719 2.519377 TTTTCATGTCGTCGTGGTCT 57.481 45.000 2.05 0.00 0.00 3.85
3825 5720 3.806316 AATTTTCATGTCGTCGTGGTC 57.194 42.857 2.05 0.00 0.00 4.02
3826 5721 3.304391 CCAAATTTTCATGTCGTCGTGGT 60.304 43.478 2.05 0.00 0.00 4.16
3827 5722 3.233578 CCAAATTTTCATGTCGTCGTGG 58.766 45.455 2.05 0.00 0.00 4.94
3828 5723 2.656422 GCCAAATTTTCATGTCGTCGTG 59.344 45.455 0.00 0.00 0.00 4.35
3829 5724 2.292016 TGCCAAATTTTCATGTCGTCGT 59.708 40.909 0.00 0.00 0.00 4.34
3830 5725 2.927429 TGCCAAATTTTCATGTCGTCG 58.073 42.857 0.00 0.00 0.00 5.12
3831 5726 4.922692 TCAATGCCAAATTTTCATGTCGTC 59.077 37.500 4.08 0.00 0.00 4.20
3832 5727 4.880759 TCAATGCCAAATTTTCATGTCGT 58.119 34.783 4.08 0.00 0.00 4.34
3833 5728 6.291217 CGTATCAATGCCAAATTTTCATGTCG 60.291 38.462 4.08 0.00 0.00 4.35
3834 5729 6.531240 ACGTATCAATGCCAAATTTTCATGTC 59.469 34.615 0.00 0.00 0.00 3.06
3835 5730 6.397272 ACGTATCAATGCCAAATTTTCATGT 58.603 32.000 0.00 0.00 0.00 3.21
3836 5731 6.890663 ACGTATCAATGCCAAATTTTCATG 57.109 33.333 0.00 0.00 0.00 3.07
3837 5732 7.202526 CCTACGTATCAATGCCAAATTTTCAT 58.797 34.615 0.00 0.00 0.00 2.57
3838 5733 6.405286 CCCTACGTATCAATGCCAAATTTTCA 60.405 38.462 0.00 0.00 0.00 2.69
3839 5734 5.977129 CCCTACGTATCAATGCCAAATTTTC 59.023 40.000 0.00 0.00 0.00 2.29
3840 5735 5.420739 ACCCTACGTATCAATGCCAAATTTT 59.579 36.000 0.00 0.00 0.00 1.82
3841 5736 4.953579 ACCCTACGTATCAATGCCAAATTT 59.046 37.500 0.00 0.00 0.00 1.82
3842 5737 4.532834 ACCCTACGTATCAATGCCAAATT 58.467 39.130 0.00 0.00 0.00 1.82
3843 5738 4.164843 ACCCTACGTATCAATGCCAAAT 57.835 40.909 0.00 0.00 0.00 2.32
3844 5739 3.637911 ACCCTACGTATCAATGCCAAA 57.362 42.857 0.00 0.00 0.00 3.28
3845 5740 3.637911 AACCCTACGTATCAATGCCAA 57.362 42.857 0.00 0.00 0.00 4.52
3846 5741 3.962063 TCTAACCCTACGTATCAATGCCA 59.038 43.478 0.00 0.00 0.00 4.92
3847 5742 4.557205 CTCTAACCCTACGTATCAATGCC 58.443 47.826 0.00 0.00 0.00 4.40
3848 5743 4.557205 CCTCTAACCCTACGTATCAATGC 58.443 47.826 0.00 0.00 0.00 3.56
3849 5744 4.557205 GCCTCTAACCCTACGTATCAATG 58.443 47.826 0.00 0.00 0.00 2.82
3850 5745 3.577415 GGCCTCTAACCCTACGTATCAAT 59.423 47.826 0.00 0.00 0.00 2.57
3851 5746 2.961062 GGCCTCTAACCCTACGTATCAA 59.039 50.000 0.00 0.00 0.00 2.57
3852 5747 2.091720 TGGCCTCTAACCCTACGTATCA 60.092 50.000 3.32 0.00 0.00 2.15
3853 5748 2.295629 GTGGCCTCTAACCCTACGTATC 59.704 54.545 3.32 0.00 0.00 2.24
3854 5749 2.314246 GTGGCCTCTAACCCTACGTAT 58.686 52.381 3.32 0.00 0.00 3.06
3855 5750 1.686115 GGTGGCCTCTAACCCTACGTA 60.686 57.143 3.32 0.00 0.00 3.57
3856 5751 0.974525 GGTGGCCTCTAACCCTACGT 60.975 60.000 3.32 0.00 0.00 3.57
3857 5752 0.686769 AGGTGGCCTCTAACCCTACG 60.687 60.000 3.32 0.00 37.13 3.51
3858 5753 0.831307 CAGGTGGCCTCTAACCCTAC 59.169 60.000 3.32 0.00 37.13 3.18
3859 5754 0.416231 ACAGGTGGCCTCTAACCCTA 59.584 55.000 3.32 0.00 37.13 3.53
3860 5755 0.910088 GACAGGTGGCCTCTAACCCT 60.910 60.000 3.32 0.00 37.13 4.34
3861 5756 1.198759 TGACAGGTGGCCTCTAACCC 61.199 60.000 3.32 0.00 37.13 4.11
3862 5757 0.690762 TTGACAGGTGGCCTCTAACC 59.309 55.000 3.32 2.33 36.66 2.85
3863 5758 2.027192 TCATTGACAGGTGGCCTCTAAC 60.027 50.000 3.32 0.00 0.00 2.34
3864 5759 2.027192 GTCATTGACAGGTGGCCTCTAA 60.027 50.000 11.93 0.00 32.09 2.10
3865 5760 1.555075 GTCATTGACAGGTGGCCTCTA 59.445 52.381 11.93 0.00 32.09 2.43
3866 5761 0.326264 GTCATTGACAGGTGGCCTCT 59.674 55.000 11.93 0.00 32.09 3.69
3867 5762 0.036732 TGTCATTGACAGGTGGCCTC 59.963 55.000 15.41 0.00 37.67 4.70
3868 5763 2.154139 TGTCATTGACAGGTGGCCT 58.846 52.632 15.41 0.00 37.67 5.19
3869 5764 4.819783 TGTCATTGACAGGTGGCC 57.180 55.556 15.41 0.00 37.67 5.36
3875 5770 8.261078 AGTATTCCACTCCCTGTCATTGACAG 62.261 46.154 31.27 31.27 45.68 3.51
3876 5771 1.728323 TCCACTCCCTGTCATTGACA 58.272 50.000 18.08 18.08 40.50 3.58
3877 5772 2.859165 TTCCACTCCCTGTCATTGAC 57.141 50.000 9.93 9.93 0.00 3.18
3878 5773 4.104086 AGTATTCCACTCCCTGTCATTGA 58.896 43.478 0.00 0.00 28.33 2.57
3879 5774 4.494091 AGTATTCCACTCCCTGTCATTG 57.506 45.455 0.00 0.00 28.33 2.82
3880 5775 4.324563 CCAAGTATTCCACTCCCTGTCATT 60.325 45.833 0.00 0.00 36.04 2.57
3881 5776 3.200825 CCAAGTATTCCACTCCCTGTCAT 59.799 47.826 0.00 0.00 36.04 3.06
3882 5777 2.571653 CCAAGTATTCCACTCCCTGTCA 59.428 50.000 0.00 0.00 36.04 3.58
3883 5778 2.092914 CCCAAGTATTCCACTCCCTGTC 60.093 54.545 0.00 0.00 36.04 3.51
3884 5779 1.916181 CCCAAGTATTCCACTCCCTGT 59.084 52.381 0.00 0.00 36.04 4.00
3885 5780 1.916181 ACCCAAGTATTCCACTCCCTG 59.084 52.381 0.00 0.00 36.04 4.45
3886 5781 2.361085 ACCCAAGTATTCCACTCCCT 57.639 50.000 0.00 0.00 36.04 4.20
3887 5782 4.579647 TTTACCCAAGTATTCCACTCCC 57.420 45.455 0.00 0.00 36.04 4.30
3907 5802 4.335037 GGACACACATTTGGTTGCATTTTT 59.665 37.500 0.00 0.00 0.00 1.94
3908 5803 3.876320 GGACACACATTTGGTTGCATTTT 59.124 39.130 0.00 0.00 0.00 1.82
3909 5804 3.118482 TGGACACACATTTGGTTGCATTT 60.118 39.130 0.00 0.00 0.00 2.32
3910 5805 2.433604 TGGACACACATTTGGTTGCATT 59.566 40.909 0.00 0.00 0.00 3.56
3911 5806 2.037901 TGGACACACATTTGGTTGCAT 58.962 42.857 0.00 0.00 0.00 3.96
3912 5807 1.478631 TGGACACACATTTGGTTGCA 58.521 45.000 0.00 0.00 0.00 4.08
3913 5808 2.818130 ATGGACACACATTTGGTTGC 57.182 45.000 0.00 0.00 0.00 4.17
3920 5815 7.862512 AAATTTTGACAAATGGACACACATT 57.137 28.000 0.50 0.00 42.56 2.71
3921 5816 8.991026 CATAAATTTTGACAAATGGACACACAT 58.009 29.630 0.50 0.00 32.57 3.21
3922 5817 7.042187 GCATAAATTTTGACAAATGGACACACA 60.042 33.333 0.50 0.00 32.57 3.72
3923 5818 7.171337 AGCATAAATTTTGACAAATGGACACAC 59.829 33.333 0.50 0.00 32.57 3.82
3924 5819 7.171167 CAGCATAAATTTTGACAAATGGACACA 59.829 33.333 0.50 0.00 32.57 3.72
3925 5820 7.360269 CCAGCATAAATTTTGACAAATGGACAC 60.360 37.037 0.50 0.00 32.57 3.67
3926 5821 6.649973 CCAGCATAAATTTTGACAAATGGACA 59.350 34.615 0.50 0.00 32.57 4.02
3927 5822 6.650390 ACCAGCATAAATTTTGACAAATGGAC 59.350 34.615 16.16 0.00 32.57 4.02
3928 5823 6.767456 ACCAGCATAAATTTTGACAAATGGA 58.233 32.000 16.16 0.00 32.57 3.41
3929 5824 7.818930 AGTACCAGCATAAATTTTGACAAATGG 59.181 33.333 0.50 6.43 32.57 3.16
3930 5825 8.761575 AGTACCAGCATAAATTTTGACAAATG 57.238 30.769 0.50 0.00 32.57 2.32
3931 5826 8.034804 GGAGTACCAGCATAAATTTTGACAAAT 58.965 33.333 0.50 0.00 33.40 2.32
3932 5827 7.232534 AGGAGTACCAGCATAAATTTTGACAAA 59.767 33.333 0.00 0.00 38.94 2.83
3933 5828 6.719370 AGGAGTACCAGCATAAATTTTGACAA 59.281 34.615 0.00 0.00 38.94 3.18
3934 5829 6.245408 AGGAGTACCAGCATAAATTTTGACA 58.755 36.000 0.00 0.00 38.94 3.58
3935 5830 6.599638 AGAGGAGTACCAGCATAAATTTTGAC 59.400 38.462 0.00 0.00 38.94 3.18
3936 5831 6.721318 AGAGGAGTACCAGCATAAATTTTGA 58.279 36.000 0.00 0.00 38.94 2.69
3937 5832 8.682936 ATAGAGGAGTACCAGCATAAATTTTG 57.317 34.615 0.00 0.00 38.94 2.44
3938 5833 9.343539 GAATAGAGGAGTACCAGCATAAATTTT 57.656 33.333 0.00 0.00 38.94 1.82
3939 5834 8.718656 AGAATAGAGGAGTACCAGCATAAATTT 58.281 33.333 0.00 0.00 38.94 1.82
3940 5835 8.268878 AGAATAGAGGAGTACCAGCATAAATT 57.731 34.615 0.00 0.00 38.94 1.82
3941 5836 7.863901 AGAATAGAGGAGTACCAGCATAAAT 57.136 36.000 0.00 0.00 38.94 1.40
3942 5837 7.565398 AGAAGAATAGAGGAGTACCAGCATAAA 59.435 37.037 0.00 0.00 38.94 1.40
3943 5838 7.069986 AGAAGAATAGAGGAGTACCAGCATAA 58.930 38.462 0.00 0.00 38.94 1.90
3944 5839 6.615617 AGAAGAATAGAGGAGTACCAGCATA 58.384 40.000 0.00 0.00 38.94 3.14
3945 5840 5.463154 AGAAGAATAGAGGAGTACCAGCAT 58.537 41.667 0.00 0.00 38.94 3.79
3958 5853 9.516546 TCAGAACAACTGTACTAGAAGAATAGA 57.483 33.333 0.00 0.00 45.86 1.98
3962 5857 7.284716 TCTGTCAGAACAACTGTACTAGAAGAA 59.715 37.037 0.00 0.00 45.86 2.52
3963 5858 6.771267 TCTGTCAGAACAACTGTACTAGAAGA 59.229 38.462 0.00 0.00 45.86 2.87
3964 5859 6.971602 TCTGTCAGAACAACTGTACTAGAAG 58.028 40.000 0.00 0.00 45.86 2.85
3969 5864 5.133941 TCTCTCTGTCAGAACAACTGTACT 58.866 41.667 3.67 0.00 45.86 2.73
3970 5865 5.440234 TCTCTCTGTCAGAACAACTGTAC 57.560 43.478 3.67 0.00 45.86 2.90
3988 5883 5.126707 GCAACAATCCAATCTCCAATTCTCT 59.873 40.000 0.00 0.00 0.00 3.10
3989 5884 5.346522 GCAACAATCCAATCTCCAATTCTC 58.653 41.667 0.00 0.00 0.00 2.87
4029 5924 9.125026 GACTTGATCTAAAATATCCAATGTGGT 57.875 33.333 0.00 0.00 39.03 4.16
4042 5937 7.548427 CAGCAGAATCTGAGACTTGATCTAAAA 59.452 37.037 15.38 0.00 38.00 1.52
4053 5948 6.992063 TTAATTTCCAGCAGAATCTGAGAC 57.008 37.500 15.38 0.00 36.19 3.36
4063 5970 6.814644 TGCTCATTTGATTTAATTTCCAGCAG 59.185 34.615 0.00 0.00 0.00 4.24
4081 5988 0.034670 GGTGGCCTCTCTTGCTCATT 60.035 55.000 3.32 0.00 0.00 2.57
4084 5991 2.129555 TTGGGTGGCCTCTCTTGCTC 62.130 60.000 3.32 0.00 0.00 4.26
4085 5992 2.156098 TTGGGTGGCCTCTCTTGCT 61.156 57.895 3.32 0.00 0.00 3.91
4092 5999 2.840753 TTGGGAGTTGGGTGGCCTC 61.841 63.158 3.32 0.00 0.00 4.70
4097 6004 0.768622 TAGTGGTTGGGAGTTGGGTG 59.231 55.000 0.00 0.00 0.00 4.61
4098 6005 0.769247 GTAGTGGTTGGGAGTTGGGT 59.231 55.000 0.00 0.00 0.00 4.51
4117 6035 5.897824 TCTCCCTCCATGGTTAGTAACTTAG 59.102 44.000 12.58 0.00 0.00 2.18
4118 6036 5.845734 TCTCCCTCCATGGTTAGTAACTTA 58.154 41.667 12.58 3.39 0.00 2.24
4119 6037 4.695606 TCTCCCTCCATGGTTAGTAACTT 58.304 43.478 12.58 0.00 0.00 2.66
4121 6039 4.202367 CCATCTCCCTCCATGGTTAGTAAC 60.202 50.000 12.58 4.32 35.67 2.50
4122 6040 3.973973 CCATCTCCCTCCATGGTTAGTAA 59.026 47.826 12.58 0.00 35.67 2.24
4123 6041 3.208922 TCCATCTCCCTCCATGGTTAGTA 59.791 47.826 12.58 0.00 40.59 1.82
4124 6042 2.022035 TCCATCTCCCTCCATGGTTAGT 60.022 50.000 12.58 0.00 40.59 2.24
4125 6043 2.636893 CTCCATCTCCCTCCATGGTTAG 59.363 54.545 12.58 2.10 40.59 2.34
4126 6044 2.250008 TCTCCATCTCCCTCCATGGTTA 59.750 50.000 12.58 0.00 40.59 2.85
4127 6045 1.010046 TCTCCATCTCCCTCCATGGTT 59.990 52.381 12.58 0.00 40.59 3.67
4128 6046 0.644380 TCTCCATCTCCCTCCATGGT 59.356 55.000 12.58 0.00 40.59 3.55
4129 6047 1.055040 GTCTCCATCTCCCTCCATGG 58.945 60.000 4.97 4.97 41.04 3.66
4130 6048 1.055040 GGTCTCCATCTCCCTCCATG 58.945 60.000 0.00 0.00 0.00 3.66
4131 6049 0.644380 TGGTCTCCATCTCCCTCCAT 59.356 55.000 0.00 0.00 0.00 3.41
4132 6050 0.325671 GTGGTCTCCATCTCCCTCCA 60.326 60.000 0.00 0.00 35.28 3.86
4133 6051 1.395826 CGTGGTCTCCATCTCCCTCC 61.396 65.000 0.00 0.00 35.28 4.30
4134 6052 0.395862 TCGTGGTCTCCATCTCCCTC 60.396 60.000 0.00 0.00 35.28 4.30
4135 6053 0.684805 GTCGTGGTCTCCATCTCCCT 60.685 60.000 0.00 0.00 35.28 4.20
4136 6054 1.817209 GTCGTGGTCTCCATCTCCC 59.183 63.158 0.00 0.00 35.28 4.30
4160 6078 7.894376 TGGCTTCTCATCAATGAAAATTTTC 57.106 32.000 21.60 21.60 36.18 2.29
4163 6081 5.815740 GCATGGCTTCTCATCAATGAAAATT 59.184 36.000 0.00 0.00 36.18 1.82
4191 6109 6.111768 AGTATCTTCGTATTTGCAAGCAAG 57.888 37.500 7.60 0.00 37.24 4.01
4192 6110 5.064707 GGAGTATCTTCGTATTTGCAAGCAA 59.935 40.000 2.89 2.89 33.73 3.91
4193 6111 4.570772 GGAGTATCTTCGTATTTGCAAGCA 59.429 41.667 0.00 0.00 33.73 3.91
4194 6112 4.811557 AGGAGTATCTTCGTATTTGCAAGC 59.188 41.667 0.00 0.00 33.73 4.01
4269 6212 2.914059 AGTACGGCCGCAATAAAAGAT 58.086 42.857 28.58 3.48 0.00 2.40
4327 6290 2.100197 CATGGATCATGGATCATGGGC 58.900 52.381 8.35 1.51 41.66 5.36
4329 6292 5.261216 TCAATCATGGATCATGGATCATGG 58.739 41.667 16.86 7.07 41.66 3.66
4330 6293 6.039829 GGATCAATCATGGATCATGGATCATG 59.960 42.308 18.22 13.24 42.31 3.07
4331 6294 6.129874 GGATCAATCATGGATCATGGATCAT 58.870 40.000 18.22 0.00 42.31 2.45
4332 6295 5.014755 TGGATCAATCATGGATCATGGATCA 59.985 40.000 18.22 0.00 42.31 2.92
4333 6296 5.506708 TGGATCAATCATGGATCATGGATC 58.493 41.667 4.31 10.81 42.31 3.36
4334 6297 5.530176 TGGATCAATCATGGATCATGGAT 57.470 39.130 4.31 3.68 42.31 3.41
4335 6298 5.253096 AGATGGATCAATCATGGATCATGGA 59.747 40.000 12.74 0.00 42.31 3.41
4336 6299 5.510430 AGATGGATCAATCATGGATCATGG 58.490 41.667 12.74 0.00 42.31 3.66
4337 6300 6.418946 AGAGATGGATCAATCATGGATCATG 58.581 40.000 12.74 1.76 42.31 3.07
4338 6301 6.353169 GGAGAGATGGATCAATCATGGATCAT 60.353 42.308 12.74 0.00 42.31 2.45
4339 6302 5.045797 GGAGAGATGGATCAATCATGGATCA 60.046 44.000 12.74 0.00 42.31 2.92
4340 6303 5.430007 GGAGAGATGGATCAATCATGGATC 58.570 45.833 12.74 0.89 40.31 3.36
4341 6304 4.227754 GGGAGAGATGGATCAATCATGGAT 59.772 45.833 12.74 0.00 0.00 3.41
4342 6305 3.586174 GGGAGAGATGGATCAATCATGGA 59.414 47.826 12.74 0.00 0.00 3.41
4364 6337 1.594293 AGGTGCGTCGTTCCTGTTG 60.594 57.895 8.99 0.00 0.00 3.33
4369 6342 4.681978 AGGCAGGTGCGTCGTTCC 62.682 66.667 0.00 0.00 43.26 3.62
4372 6345 3.299977 TACAGGCAGGTGCGTCGT 61.300 61.111 0.00 0.53 43.26 4.34
4373 6346 2.809601 GTACAGGCAGGTGCGTCG 60.810 66.667 0.00 0.00 43.26 5.12
4374 6347 2.434359 GGTACAGGCAGGTGCGTC 60.434 66.667 0.00 0.00 43.26 5.19
4375 6348 2.923035 AGGTACAGGCAGGTGCGT 60.923 61.111 0.00 0.00 43.26 5.24
4389 6362 3.626924 GGGCCGTGTCAGTCAGGT 61.627 66.667 0.00 0.00 0.00 4.00
4390 6363 4.742201 CGGGCCGTGTCAGTCAGG 62.742 72.222 19.97 0.00 0.00 3.86
4442 6415 2.986979 TCCGCACTCCGCACTACA 60.987 61.111 0.00 0.00 42.60 2.74
4443 6416 2.506438 GTCCGCACTCCGCACTAC 60.506 66.667 0.00 0.00 42.60 2.73
4487 6460 2.870161 CTTCGCCGACGTCGTCAG 60.870 66.667 33.49 23.68 41.18 3.51
4488 6461 3.348205 TCTTCGCCGACGTCGTCA 61.348 61.111 33.49 15.98 41.18 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.