Multiple sequence alignment - TraesCS4A01G263000

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G263000 chr4A 100.000 5723 0 0 4054 9776 575187983 575182261 0.000000e+00 10569.0
1 TraesCS4A01G263000 chr4A 100.000 2414 0 0 1402 3815 575190635 575188222 0.000000e+00 4458.0
2 TraesCS4A01G263000 chr4A 88.080 2500 244 46 5259 7734 239777000 239779469 0.000000e+00 2916.0
3 TraesCS4A01G263000 chr4A 100.000 1071 0 0 1 1071 575192036 575190966 0.000000e+00 1978.0
4 TraesCS4A01G263000 chr4A 95.422 983 40 4 1 979 134104297 134103316 0.000000e+00 1561.0
5 TraesCS4A01G263000 chr4A 88.822 501 50 5 7789 8285 275115953 275115455 2.330000e-170 610.0
6 TraesCS4A01G263000 chr4A 88.600 500 53 3 7789 8285 275124160 275123662 1.090000e-168 604.0
7 TraesCS4A01G263000 chr4A 80.560 643 80 30 9007 9640 420631523 420632129 4.160000e-123 453.0
8 TraesCS4A01G263000 chr4A 97.087 103 2 1 969 1071 247870041 247870142 1.310000e-38 172.0
9 TraesCS4A01G263000 chr5A 88.382 3176 289 68 5257 8390 215828699 215825562 0.000000e+00 3747.0
10 TraesCS4A01G263000 chr5A 87.798 3065 300 62 5259 8284 273240394 273243423 0.000000e+00 3520.0
11 TraesCS4A01G263000 chr5A 95.558 968 43 0 1 968 479295576 479294609 0.000000e+00 1550.0
12 TraesCS4A01G263000 chr5A 93.233 399 26 1 8385 8783 215816835 215816438 3.930000e-163 586.0
13 TraesCS4A01G263000 chr5A 80.095 633 102 23 9015 9640 467617187 467617802 5.390000e-122 449.0
14 TraesCS4A01G263000 chr5A 79.095 641 105 28 9009 9640 467609090 467609710 1.960000e-111 414.0
15 TraesCS4A01G263000 chr7D 94.518 2426 102 19 1402 3815 64347569 64349975 0.000000e+00 3714.0
16 TraesCS4A01G263000 chr7D 88.011 2544 236 56 5259 7764 515663160 515660648 0.000000e+00 2944.0
17 TraesCS4A01G263000 chr7D 95.620 1210 46 4 4054 5258 439651981 439653188 0.000000e+00 1934.0
18 TraesCS4A01G263000 chr7D 95.530 1208 47 6 4054 5258 131348556 131349759 0.000000e+00 1925.0
19 TraesCS4A01G263000 chr7D 95.526 1207 46 5 4054 5258 173885372 173884172 0.000000e+00 1923.0
20 TraesCS4A01G263000 chr2D 94.229 2426 108 17 1402 3815 651225540 651227945 0.000000e+00 3675.0
21 TraesCS4A01G263000 chr2D 94.140 2389 107 10 1416 3788 206416039 206413668 0.000000e+00 3605.0
22 TraesCS4A01G263000 chr2D 87.911 2523 229 66 5255 7735 398383064 398385552 0.000000e+00 2900.0
23 TraesCS4A01G263000 chr2D 95.194 1290 43 5 2526 3815 201509675 201510945 0.000000e+00 2021.0
24 TraesCS4A01G263000 chr2D 91.900 1358 84 15 2463 3805 47038903 47040249 0.000000e+00 1875.0
25 TraesCS4A01G263000 chr2D 97.087 103 2 1 969 1071 461642402 461642301 1.310000e-38 172.0
26 TraesCS4A01G263000 chr2D 97.000 100 3 0 972 1071 17288610 17288511 1.690000e-37 169.0
27 TraesCS4A01G263000 chr5D 94.057 2423 111 17 1402 3815 225447046 225449444 0.000000e+00 3646.0
28 TraesCS4A01G263000 chr5D 93.882 2419 111 18 1402 3812 540153846 540156235 0.000000e+00 3613.0
29 TraesCS4A01G263000 chr5D 93.534 2428 122 14 1402 3815 541745897 541748303 0.000000e+00 3581.0
30 TraesCS4A01G263000 chr5D 92.995 2441 120 16 1402 3815 453316842 453319258 0.000000e+00 3513.0
31 TraesCS4A01G263000 chr5D 87.829 2547 224 70 5259 7754 466513365 466515876 0.000000e+00 2907.0
32 TraesCS4A01G263000 chr5D 95.530 1208 45 4 4054 5258 512077470 512076269 0.000000e+00 1923.0
33 TraesCS4A01G263000 chr5D 97.778 135 3 0 9642 9776 293737707 293737841 5.900000e-57 233.0
34 TraesCS4A01G263000 chr5D 93.836 146 9 0 9631 9776 279906709 279906564 4.600000e-53 220.0
35 TraesCS4A01G263000 chr5D 95.000 40 2 0 8823 8862 216673347 216673386 8.200000e-06 63.9
36 TraesCS4A01G263000 chr4D 94.018 2424 105 12 1402 3815 472459373 472456980 0.000000e+00 3637.0
37 TraesCS4A01G263000 chr4D 93.794 2433 116 13 1402 3815 220744771 220742355 0.000000e+00 3624.0
38 TraesCS4A01G263000 chr4D 93.815 2409 110 10 1417 3815 256633914 256631535 0.000000e+00 3587.0
39 TraesCS4A01G263000 chr4D 93.613 2411 108 12 1417 3815 343749575 343751951 0.000000e+00 3557.0
40 TraesCS4A01G263000 chr4D 89.184 2487 206 45 5259 7719 55521902 55524351 0.000000e+00 3044.0
41 TraesCS4A01G263000 chr4D 94.555 1304 52 4 2514 3815 56841712 56840426 0.000000e+00 1997.0
42 TraesCS4A01G263000 chr4D 97.000 100 3 0 972 1071 52741688 52741589 1.690000e-37 169.0
43 TraesCS4A01G263000 chr4D 96.117 103 4 0 969 1071 265507153 265507255 1.690000e-37 169.0
44 TraesCS4A01G263000 chr4D 96.117 103 4 0 969 1071 406075440 406075542 1.690000e-37 169.0
45 TraesCS4A01G263000 chr1D 93.917 2433 108 11 1402 3815 332343993 332346404 0.000000e+00 3637.0
46 TraesCS4A01G263000 chr1D 93.944 2411 107 9 1417 3815 370569158 370566775 0.000000e+00 3607.0
47 TraesCS4A01G263000 chr1D 93.709 2416 106 17 1415 3815 161469108 161466724 0.000000e+00 3578.0
48 TraesCS4A01G263000 chr1D 93.558 2406 119 9 1416 3815 175241559 175239184 0.000000e+00 3552.0
49 TraesCS4A01G263000 chr1D 93.376 2370 110 15 1458 3815 381121731 381124065 0.000000e+00 3463.0
50 TraesCS4A01G263000 chr1D 93.221 2375 116 13 1452 3815 338782760 338780420 0.000000e+00 3452.0
51 TraesCS4A01G263000 chr1D 93.550 1690 65 12 2129 3815 108648908 108647260 0.000000e+00 2477.0
52 TraesCS4A01G263000 chr1D 95.158 1301 42 6 2517 3815 226792847 226791566 0.000000e+00 2034.0
53 TraesCS4A01G263000 chr1D 94.562 1324 43 9 2498 3815 476975356 476976656 0.000000e+00 2019.0
54 TraesCS4A01G263000 chr1D 95.116 1249 42 5 2541 3787 24428633 24427402 0.000000e+00 1951.0
55 TraesCS4A01G263000 chr1D 94.518 1277 47 6 2543 3815 318400177 318401434 0.000000e+00 1949.0
56 TraesCS4A01G263000 chr1D 95.778 1208 44 4 4054 5257 425111185 425112389 0.000000e+00 1941.0
57 TraesCS4A01G263000 chr1D 95.368 1209 50 4 4054 5258 239042077 239040871 0.000000e+00 1917.0
58 TraesCS4A01G263000 chr1D 97.037 135 4 0 9642 9776 77516825 77516691 2.750000e-55 228.0
59 TraesCS4A01G263000 chr1D 96.117 103 4 0 969 1071 60581669 60581771 1.690000e-37 169.0
60 TraesCS4A01G263000 chr1D 97.000 100 3 0 972 1071 428909190 428909091 1.690000e-37 169.0
61 TraesCS4A01G263000 chr1D 92.500 40 3 0 7935 7974 77372586 77372547 3.810000e-04 58.4
62 TraesCS4A01G263000 chr1D 92.500 40 3 0 7935 7974 144587900 144587861 3.810000e-04 58.4
63 TraesCS4A01G263000 chr1D 92.500 40 3 0 7935 7974 196833653 196833614 3.810000e-04 58.4
64 TraesCS4A01G263000 chr1D 92.500 40 3 0 7935 7974 199293318 199293279 3.810000e-04 58.4
65 TraesCS4A01G263000 chr1D 97.059 34 1 0 7935 7968 280786148 280786181 3.810000e-04 58.4
66 TraesCS4A01G263000 chr1D 97.059 34 1 0 7935 7968 280793370 280793403 3.810000e-04 58.4
67 TraesCS4A01G263000 chr1D 97.059 34 1 0 7935 7968 342052540 342052573 3.810000e-04 58.4
68 TraesCS4A01G263000 chr1D 86.275 51 7 0 7917 7967 172860582 172860632 1.000000e-03 56.5
69 TraesCS4A01G263000 chr7A 93.570 2364 104 14 1471 3815 175371202 175373536 0.000000e+00 3480.0
70 TraesCS4A01G263000 chr7A 86.664 3067 328 62 5258 8285 355007717 355010741 0.000000e+00 3323.0
71 TraesCS4A01G263000 chr7A 95.572 971 43 0 1 971 156406637 156405667 0.000000e+00 1555.0
72 TraesCS4A01G263000 chr7A 95.558 968 43 0 1 968 655603196 655604163 0.000000e+00 1550.0
73 TraesCS4A01G263000 chr7A 80.631 666 105 20 8986 9640 327232336 327231684 2.450000e-135 494.0
74 TraesCS4A01G263000 chr3A 87.324 3061 301 68 5259 8285 380621939 380624946 0.000000e+00 3422.0
75 TraesCS4A01G263000 chr3A 89.508 2478 212 43 5261 7714 247652274 247654727 0.000000e+00 3092.0
76 TraesCS4A01G263000 chr3A 88.159 2483 244 39 5259 7714 626897634 626895175 0.000000e+00 2911.0
77 TraesCS4A01G263000 chr3A 86.469 2121 229 44 6192 8285 380615070 380617159 0.000000e+00 2274.0
78 TraesCS4A01G263000 chr3A 91.221 729 62 2 8057 8784 565100591 565101318 0.000000e+00 990.0
79 TraesCS4A01G263000 chr3A 80.080 1245 171 58 6630 7830 285701871 285703082 0.000000e+00 854.0
80 TraesCS4A01G263000 chr3A 82.282 824 118 20 7145 7946 337511720 337510903 0.000000e+00 688.0
81 TraesCS4A01G263000 chr3A 88.739 444 46 3 7845 8285 553232572 553233014 3.110000e-149 540.0
82 TraesCS4A01G263000 chr3A 88.090 445 47 5 7845 8285 553274398 553274840 3.130000e-144 523.0
83 TraesCS4A01G263000 chr3A 83.969 524 60 12 8766 9271 270914148 270913631 1.910000e-131 481.0
84 TraesCS4A01G263000 chr3A 78.851 766 99 44 7186 7913 252190940 252191680 8.950000e-125 459.0
85 TraesCS4A01G263000 chr3A 84.401 359 35 13 8526 8866 309863214 309862859 5.660000e-87 333.0
86 TraesCS4A01G263000 chrUn 92.400 2421 142 14 1402 3815 238797273 238799658 0.000000e+00 3413.0
87 TraesCS4A01G263000 chrUn 91.819 2457 124 34 1402 3815 100963019 100965441 0.000000e+00 3352.0
88 TraesCS4A01G263000 chrUn 91.901 2420 126 19 1424 3805 131451494 131449107 0.000000e+00 3319.0
89 TraesCS4A01G263000 chrUn 92.332 2256 118 15 1572 3815 239197956 239195744 0.000000e+00 3157.0
90 TraesCS4A01G263000 chrUn 92.475 1515 61 16 2315 3815 25810688 25812163 0.000000e+00 2117.0
91 TraesCS4A01G263000 chrUn 94.058 1279 58 4 2539 3815 96101628 96100366 0.000000e+00 1925.0
92 TraesCS4A01G263000 chrUn 91.361 1308 69 25 2515 3805 397323390 397324670 0.000000e+00 1749.0
93 TraesCS4A01G263000 chrUn 90.708 1313 81 20 2507 3802 310534741 310536029 0.000000e+00 1711.0
94 TraesCS4A01G263000 chrUn 90.708 1313 81 20 2507 3802 310546496 310545208 0.000000e+00 1711.0
95 TraesCS4A01G263000 chr6D 93.587 2230 109 13 1410 3631 66594641 66592438 0.000000e+00 3295.0
96 TraesCS4A01G263000 chr6D 93.679 2199 105 12 1632 3815 322097989 322095810 0.000000e+00 3260.0
97 TraesCS4A01G263000 chr6D 93.772 1445 58 10 2374 3815 341598774 341600189 0.000000e+00 2141.0
98 TraesCS4A01G263000 chr6D 94.372 1386 51 7 2438 3815 90723007 90721641 0.000000e+00 2102.0
99 TraesCS4A01G263000 chr6D 95.785 1210 42 4 4054 5258 66855286 66854081 0.000000e+00 1943.0
100 TraesCS4A01G263000 chr6D 95.222 1214 49 4 4054 5258 211325375 211324162 0.000000e+00 1912.0
101 TraesCS4A01G263000 chr6D 94.528 932 33 4 2886 3815 49380428 49379513 0.000000e+00 1423.0
102 TraesCS4A01G263000 chr6D 94.808 886 28 4 2931 3815 208798283 208799151 0.000000e+00 1365.0
103 TraesCS4A01G263000 chr1A 89.152 2489 236 33 5259 7727 399398241 399400715 0.000000e+00 3070.0
104 TraesCS4A01G263000 chr1A 88.913 2309 209 38 6504 8783 178091127 178088837 0.000000e+00 2802.0
105 TraesCS4A01G263000 chr1A 87.099 1589 154 30 7219 8787 178082695 178081138 0.000000e+00 1751.0
106 TraesCS4A01G263000 chr1A 95.567 970 42 1 1 970 392926860 392927828 0.000000e+00 1552.0
107 TraesCS4A01G263000 chr1A 95.567 970 40 2 1 970 550262112 550263078 0.000000e+00 1550.0
108 TraesCS4A01G263000 chr1A 90.884 362 26 6 7928 8285 79771036 79770678 6.870000e-131 479.0
109 TraesCS4A01G263000 chr1A 90.305 361 31 3 7928 8285 79840617 79840258 4.130000e-128 470.0
110 TraesCS4A01G263000 chr1A 82.250 569 72 27 8986 9543 355850457 355849907 1.920000e-126 464.0
111 TraesCS4A01G263000 chr1A 81.129 567 82 23 8986 9543 355823178 355822628 1.950000e-116 431.0
112 TraesCS4A01G263000 chr1A 90.604 298 27 1 8247 8544 173709186 173708890 2.560000e-105 394.0
113 TraesCS4A01G263000 chr1A 86.735 294 38 1 8253 8546 173726231 173725939 9.470000e-85 326.0
114 TraesCS4A01G263000 chr1A 90.683 161 14 1 8372 8531 127128813 127128973 7.690000e-51 213.0
115 TraesCS4A01G263000 chr1A 87.500 184 21 2 8127 8309 77683777 77683959 2.770000e-50 211.0
116 TraesCS4A01G263000 chr1A 85.238 210 26 5 7788 7995 81254370 81254164 2.770000e-50 211.0
117 TraesCS4A01G263000 chr1A 88.372 172 18 2 8139 8309 48721474 48721304 1.290000e-48 206.0
118 TraesCS4A01G263000 chr1A 89.441 161 16 1 8372 8531 127120195 127120355 1.660000e-47 202.0
119 TraesCS4A01G263000 chr1A 87.821 156 18 1 8300 8454 204674996 204675151 2.170000e-41 182.0
120 TraesCS4A01G263000 chr1A 89.147 129 12 1 7928 8054 10003073 10003201 1.020000e-34 159.0
121 TraesCS4A01G263000 chr1A 89.333 75 8 0 8057 8131 286234864 286234938 2.910000e-15 95.3
122 TraesCS4A01G263000 chr1A 86.047 86 8 3 7900 7983 128729999 128729916 1.350000e-13 89.8
123 TraesCS4A01G263000 chr1A 88.732 71 8 0 8057 8127 395584938 395585008 4.860000e-13 87.9
124 TraesCS4A01G263000 chr3D 87.692 2535 233 67 5259 7752 505345527 505348023 0.000000e+00 2880.0
125 TraesCS4A01G263000 chr3D 94.444 1278 48 6 2545 3815 576984885 576983624 0.000000e+00 1945.0
126 TraesCS4A01G263000 chr3D 95.778 1208 43 5 4058 5258 39489464 39488258 0.000000e+00 1941.0
127 TraesCS4A01G263000 chr3D 94.628 968 33 5 2850 3815 486462390 486463340 0.000000e+00 1482.0
128 TraesCS4A01G263000 chr3D 93.478 46 2 1 8823 8867 146542769 146542814 6.340000e-07 67.6
129 TraesCS4A01G263000 chr6A 84.626 2823 325 74 5252 7999 221615621 221618409 0.000000e+00 2708.0
130 TraesCS4A01G263000 chr6A 79.918 2669 357 133 5259 7820 310627349 310629945 0.000000e+00 1794.0
131 TraesCS4A01G263000 chr6A 79.535 2668 370 130 5258 7820 310611744 310614340 0.000000e+00 1740.0
132 TraesCS4A01G263000 chr6A 95.876 970 40 0 1 970 204822430 204823399 0.000000e+00 1570.0
133 TraesCS4A01G263000 chr6A 95.666 969 41 1 1 968 84620236 84619268 0.000000e+00 1555.0
134 TraesCS4A01G263000 chr6A 95.567 970 41 2 1 969 169166366 169165398 0.000000e+00 1552.0
135 TraesCS4A01G263000 chr6A 80.440 910 116 33 8752 9640 411636508 411637376 1.070000e-178 638.0
136 TraesCS4A01G263000 chr6A 91.690 361 26 3 7928 8285 56141363 56141004 1.900000e-136 497.0
137 TraesCS4A01G263000 chr6A 81.728 602 88 21 9047 9640 252523428 252524015 5.310000e-132 483.0
138 TraesCS4A01G263000 chr6A 87.761 335 37 3 7954 8285 133582338 133582005 1.190000e-103 388.0
139 TraesCS4A01G263000 chr6A 87.059 170 21 1 8372 8540 159011008 159010839 3.600000e-44 191.0
140 TraesCS4A01G263000 chr6A 96.117 103 4 0 969 1071 502182529 502182631 1.690000e-37 169.0
141 TraesCS4A01G263000 chr6A 87.619 105 10 2 7953 8054 304964833 304964729 1.720000e-22 119.0
142 TraesCS4A01G263000 chr6A 84.783 92 10 3 7953 8044 521586578 521586665 1.350000e-13 89.8
143 TraesCS4A01G263000 chr6A 97.561 41 1 0 7928 7968 218021124 218021084 4.900000e-08 71.3
144 TraesCS4A01G263000 chr6A 91.489 47 4 0 7928 7974 218053362 218053316 2.280000e-06 65.8
145 TraesCS4A01G263000 chr5B 92.025 953 59 14 2755 3701 27071185 27070244 0.000000e+00 1323.0
146 TraesCS4A01G263000 chr5B 88.448 277 27 4 8527 8802 182783061 182783333 7.320000e-86 329.0
147 TraesCS4A01G263000 chr5B 88.448 277 27 5 8527 8802 359057130 359057402 7.320000e-86 329.0
148 TraesCS4A01G263000 chr5B 87.589 282 28 7 8523 8803 562572635 562572360 4.410000e-83 320.0
149 TraesCS4A01G263000 chr5B 88.934 244 25 2 8559 8802 359049173 359049414 5.740000e-77 300.0
150 TraesCS4A01G263000 chr5B 95.070 142 6 1 9635 9776 650686790 650686930 1.280000e-53 222.0
151 TraesCS4A01G263000 chr5B 97.727 44 1 0 8823 8866 150030319 150030362 1.050000e-09 76.8
152 TraesCS4A01G263000 chr2A 82.831 996 115 29 7308 8285 317960519 317959562 0.000000e+00 841.0
153 TraesCS4A01G263000 chr2A 79.257 646 101 30 9008 9640 363632030 363632655 4.220000e-113 420.0
154 TraesCS4A01G263000 chr2A 78.825 647 100 32 9009 9640 285649758 285650382 1.530000e-107 401.0
155 TraesCS4A01G263000 chr2A 97.778 135 3 0 9642 9776 501449377 501449511 5.900000e-57 233.0
156 TraesCS4A01G263000 chr3B 88.889 279 25 6 8523 8800 151768029 151767756 1.220000e-88 339.0
157 TraesCS4A01G263000 chr4B 97.778 135 3 0 9642 9776 647333248 647333114 5.900000e-57 233.0
158 TraesCS4A01G263000 chr4B 93.548 155 7 3 8649 8802 310907188 310907036 2.750000e-55 228.0
159 TraesCS4A01G263000 chr4B 93.289 149 8 2 9629 9776 189280962 189281109 1.650000e-52 219.0
160 TraesCS4A01G263000 chr4B 92.258 155 9 3 8649 8802 602110466 602110618 5.950000e-52 217.0
161 TraesCS4A01G263000 chr4B 92.105 152 9 3 8649 8799 602105154 602105303 2.770000e-50 211.0
162 TraesCS4A01G263000 chr2B 97.778 135 3 0 9642 9776 212460348 212460482 5.900000e-57 233.0
163 TraesCS4A01G263000 chr6B 97.080 137 4 0 9640 9776 515455588 515455724 2.120000e-56 231.0
164 TraesCS4A01G263000 chr6B 91.391 151 11 2 8653 8802 212224836 212224687 1.290000e-48 206.0
165 TraesCS4A01G263000 chr6B 90.323 155 12 3 8649 8802 648310393 648310545 5.990000e-47 200.0
166 TraesCS4A01G263000 chr6B 91.096 146 12 1 8657 8802 346035586 346035442 7.750000e-46 196.0
167 TraesCS4A01G263000 chr6B 89.726 146 14 1 8657 8802 346028001 346027857 1.680000e-42 185.0
168 TraesCS4A01G263000 chr1B 92.105 152 8 4 8653 8802 196829053 196828904 2.770000e-50 211.0
169 TraesCS4A01G263000 chr1B 90.604 149 12 2 8653 8800 196836906 196836759 7.750000e-46 196.0
170 TraesCS4A01G263000 chr1B 93.976 83 4 1 8710 8792 427274708 427274789 3.710000e-24 124.0
171 TraesCS4A01G263000 chr1B 96.970 33 1 0 7875 7907 653164385 653164353 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G263000 chr4A 575182261 575192036 9775 True 5668.333333 10569 100.000 1 9776 3 chr4A.!!$R4 9775
1 TraesCS4A01G263000 chr4A 239777000 239779469 2469 False 2916.000000 2916 88.080 5259 7734 1 chr4A.!!$F1 2475
2 TraesCS4A01G263000 chr4A 134103316 134104297 981 True 1561.000000 1561 95.422 1 979 1 chr4A.!!$R1 978
3 TraesCS4A01G263000 chr4A 420631523 420632129 606 False 453.000000 453 80.560 9007 9640 1 chr4A.!!$F3 633
4 TraesCS4A01G263000 chr5A 215825562 215828699 3137 True 3747.000000 3747 88.382 5257 8390 1 chr5A.!!$R2 3133
5 TraesCS4A01G263000 chr5A 273240394 273243423 3029 False 3520.000000 3520 87.798 5259 8284 1 chr5A.!!$F1 3025
6 TraesCS4A01G263000 chr5A 479294609 479295576 967 True 1550.000000 1550 95.558 1 968 1 chr5A.!!$R3 967
7 TraesCS4A01G263000 chr5A 467617187 467617802 615 False 449.000000 449 80.095 9015 9640 1 chr5A.!!$F3 625
8 TraesCS4A01G263000 chr5A 467609090 467609710 620 False 414.000000 414 79.095 9009 9640 1 chr5A.!!$F2 631
9 TraesCS4A01G263000 chr7D 64347569 64349975 2406 False 3714.000000 3714 94.518 1402 3815 1 chr7D.!!$F1 2413
10 TraesCS4A01G263000 chr7D 515660648 515663160 2512 True 2944.000000 2944 88.011 5259 7764 1 chr7D.!!$R2 2505
11 TraesCS4A01G263000 chr7D 439651981 439653188 1207 False 1934.000000 1934 95.620 4054 5258 1 chr7D.!!$F3 1204
12 TraesCS4A01G263000 chr7D 131348556 131349759 1203 False 1925.000000 1925 95.530 4054 5258 1 chr7D.!!$F2 1204
13 TraesCS4A01G263000 chr7D 173884172 173885372 1200 True 1923.000000 1923 95.526 4054 5258 1 chr7D.!!$R1 1204
14 TraesCS4A01G263000 chr2D 651225540 651227945 2405 False 3675.000000 3675 94.229 1402 3815 1 chr2D.!!$F4 2413
15 TraesCS4A01G263000 chr2D 206413668 206416039 2371 True 3605.000000 3605 94.140 1416 3788 1 chr2D.!!$R2 2372
16 TraesCS4A01G263000 chr2D 398383064 398385552 2488 False 2900.000000 2900 87.911 5255 7735 1 chr2D.!!$F3 2480
17 TraesCS4A01G263000 chr2D 201509675 201510945 1270 False 2021.000000 2021 95.194 2526 3815 1 chr2D.!!$F2 1289
18 TraesCS4A01G263000 chr2D 47038903 47040249 1346 False 1875.000000 1875 91.900 2463 3805 1 chr2D.!!$F1 1342
19 TraesCS4A01G263000 chr5D 225447046 225449444 2398 False 3646.000000 3646 94.057 1402 3815 1 chr5D.!!$F2 2413
20 TraesCS4A01G263000 chr5D 540153846 540156235 2389 False 3613.000000 3613 93.882 1402 3812 1 chr5D.!!$F6 2410
21 TraesCS4A01G263000 chr5D 541745897 541748303 2406 False 3581.000000 3581 93.534 1402 3815 1 chr5D.!!$F7 2413
22 TraesCS4A01G263000 chr5D 453316842 453319258 2416 False 3513.000000 3513 92.995 1402 3815 1 chr5D.!!$F4 2413
23 TraesCS4A01G263000 chr5D 466513365 466515876 2511 False 2907.000000 2907 87.829 5259 7754 1 chr5D.!!$F5 2495
24 TraesCS4A01G263000 chr5D 512076269 512077470 1201 True 1923.000000 1923 95.530 4054 5258 1 chr5D.!!$R2 1204
25 TraesCS4A01G263000 chr4D 472456980 472459373 2393 True 3637.000000 3637 94.018 1402 3815 1 chr4D.!!$R5 2413
26 TraesCS4A01G263000 chr4D 220742355 220744771 2416 True 3624.000000 3624 93.794 1402 3815 1 chr4D.!!$R3 2413
27 TraesCS4A01G263000 chr4D 256631535 256633914 2379 True 3587.000000 3587 93.815 1417 3815 1 chr4D.!!$R4 2398
28 TraesCS4A01G263000 chr4D 343749575 343751951 2376 False 3557.000000 3557 93.613 1417 3815 1 chr4D.!!$F3 2398
29 TraesCS4A01G263000 chr4D 55521902 55524351 2449 False 3044.000000 3044 89.184 5259 7719 1 chr4D.!!$F1 2460
30 TraesCS4A01G263000 chr4D 56840426 56841712 1286 True 1997.000000 1997 94.555 2514 3815 1 chr4D.!!$R2 1301
31 TraesCS4A01G263000 chr1D 332343993 332346404 2411 False 3637.000000 3637 93.917 1402 3815 1 chr1D.!!$F6 2413
32 TraesCS4A01G263000 chr1D 370566775 370569158 2383 True 3607.000000 3607 93.944 1417 3815 1 chr1D.!!$R13 2398
33 TraesCS4A01G263000 chr1D 161466724 161469108 2384 True 3578.000000 3578 93.709 1415 3815 1 chr1D.!!$R6 2400
34 TraesCS4A01G263000 chr1D 175239184 175241559 2375 True 3552.000000 3552 93.558 1416 3815 1 chr1D.!!$R7 2399
35 TraesCS4A01G263000 chr1D 381121731 381124065 2334 False 3463.000000 3463 93.376 1458 3815 1 chr1D.!!$F8 2357
36 TraesCS4A01G263000 chr1D 338780420 338782760 2340 True 3452.000000 3452 93.221 1452 3815 1 chr1D.!!$R12 2363
37 TraesCS4A01G263000 chr1D 108647260 108648908 1648 True 2477.000000 2477 93.550 2129 3815 1 chr1D.!!$R4 1686
38 TraesCS4A01G263000 chr1D 226791566 226792847 1281 True 2034.000000 2034 95.158 2517 3815 1 chr1D.!!$R10 1298
39 TraesCS4A01G263000 chr1D 476975356 476976656 1300 False 2019.000000 2019 94.562 2498 3815 1 chr1D.!!$F10 1317
40 TraesCS4A01G263000 chr1D 24427402 24428633 1231 True 1951.000000 1951 95.116 2541 3787 1 chr1D.!!$R1 1246
41 TraesCS4A01G263000 chr1D 318400177 318401434 1257 False 1949.000000 1949 94.518 2543 3815 1 chr1D.!!$F5 1272
42 TraesCS4A01G263000 chr1D 425111185 425112389 1204 False 1941.000000 1941 95.778 4054 5257 1 chr1D.!!$F9 1203
43 TraesCS4A01G263000 chr1D 239040871 239042077 1206 True 1917.000000 1917 95.368 4054 5258 1 chr1D.!!$R11 1204
44 TraesCS4A01G263000 chr7A 175371202 175373536 2334 False 3480.000000 3480 93.570 1471 3815 1 chr7A.!!$F1 2344
45 TraesCS4A01G263000 chr7A 355007717 355010741 3024 False 3323.000000 3323 86.664 5258 8285 1 chr7A.!!$F2 3027
46 TraesCS4A01G263000 chr7A 156405667 156406637 970 True 1555.000000 1555 95.572 1 971 1 chr7A.!!$R1 970
47 TraesCS4A01G263000 chr7A 655603196 655604163 967 False 1550.000000 1550 95.558 1 968 1 chr7A.!!$F3 967
48 TraesCS4A01G263000 chr7A 327231684 327232336 652 True 494.000000 494 80.631 8986 9640 1 chr7A.!!$R2 654
49 TraesCS4A01G263000 chr3A 380621939 380624946 3007 False 3422.000000 3422 87.324 5259 8285 1 chr3A.!!$F5 3026
50 TraesCS4A01G263000 chr3A 247652274 247654727 2453 False 3092.000000 3092 89.508 5261 7714 1 chr3A.!!$F1 2453
51 TraesCS4A01G263000 chr3A 626895175 626897634 2459 True 2911.000000 2911 88.159 5259 7714 1 chr3A.!!$R4 2455
52 TraesCS4A01G263000 chr3A 380615070 380617159 2089 False 2274.000000 2274 86.469 6192 8285 1 chr3A.!!$F4 2093
53 TraesCS4A01G263000 chr3A 565100591 565101318 727 False 990.000000 990 91.221 8057 8784 1 chr3A.!!$F8 727
54 TraesCS4A01G263000 chr3A 285701871 285703082 1211 False 854.000000 854 80.080 6630 7830 1 chr3A.!!$F3 1200
55 TraesCS4A01G263000 chr3A 337510903 337511720 817 True 688.000000 688 82.282 7145 7946 1 chr3A.!!$R3 801
56 TraesCS4A01G263000 chr3A 270913631 270914148 517 True 481.000000 481 83.969 8766 9271 1 chr3A.!!$R1 505
57 TraesCS4A01G263000 chr3A 252190940 252191680 740 False 459.000000 459 78.851 7186 7913 1 chr3A.!!$F2 727
58 TraesCS4A01G263000 chrUn 238797273 238799658 2385 False 3413.000000 3413 92.400 1402 3815 1 chrUn.!!$F3 2413
59 TraesCS4A01G263000 chrUn 100963019 100965441 2422 False 3352.000000 3352 91.819 1402 3815 1 chrUn.!!$F2 2413
60 TraesCS4A01G263000 chrUn 131449107 131451494 2387 True 3319.000000 3319 91.901 1424 3805 1 chrUn.!!$R2 2381
61 TraesCS4A01G263000 chrUn 239195744 239197956 2212 True 3157.000000 3157 92.332 1572 3815 1 chrUn.!!$R3 2243
62 TraesCS4A01G263000 chrUn 25810688 25812163 1475 False 2117.000000 2117 92.475 2315 3815 1 chrUn.!!$F1 1500
63 TraesCS4A01G263000 chrUn 96100366 96101628 1262 True 1925.000000 1925 94.058 2539 3815 1 chrUn.!!$R1 1276
64 TraesCS4A01G263000 chrUn 397323390 397324670 1280 False 1749.000000 1749 91.361 2515 3805 1 chrUn.!!$F5 1290
65 TraesCS4A01G263000 chrUn 310534741 310536029 1288 False 1711.000000 1711 90.708 2507 3802 1 chrUn.!!$F4 1295
66 TraesCS4A01G263000 chrUn 310545208 310546496 1288 True 1711.000000 1711 90.708 2507 3802 1 chrUn.!!$R4 1295
67 TraesCS4A01G263000 chr6D 66592438 66594641 2203 True 3295.000000 3295 93.587 1410 3631 1 chr6D.!!$R2 2221
68 TraesCS4A01G263000 chr6D 322095810 322097989 2179 True 3260.000000 3260 93.679 1632 3815 1 chr6D.!!$R6 2183
69 TraesCS4A01G263000 chr6D 341598774 341600189 1415 False 2141.000000 2141 93.772 2374 3815 1 chr6D.!!$F2 1441
70 TraesCS4A01G263000 chr6D 90721641 90723007 1366 True 2102.000000 2102 94.372 2438 3815 1 chr6D.!!$R4 1377
71 TraesCS4A01G263000 chr6D 66854081 66855286 1205 True 1943.000000 1943 95.785 4054 5258 1 chr6D.!!$R3 1204
72 TraesCS4A01G263000 chr6D 211324162 211325375 1213 True 1912.000000 1912 95.222 4054 5258 1 chr6D.!!$R5 1204
73 TraesCS4A01G263000 chr6D 49379513 49380428 915 True 1423.000000 1423 94.528 2886 3815 1 chr6D.!!$R1 929
74 TraesCS4A01G263000 chr6D 208798283 208799151 868 False 1365.000000 1365 94.808 2931 3815 1 chr6D.!!$F1 884
75 TraesCS4A01G263000 chr1A 399398241 399400715 2474 False 3070.000000 3070 89.152 5259 7727 1 chr1A.!!$F9 2468
76 TraesCS4A01G263000 chr1A 178088837 178091127 2290 True 2802.000000 2802 88.913 6504 8783 1 chr1A.!!$R9 2279
77 TraesCS4A01G263000 chr1A 178081138 178082695 1557 True 1751.000000 1751 87.099 7219 8787 1 chr1A.!!$R8 1568
78 TraesCS4A01G263000 chr1A 392926860 392927828 968 False 1552.000000 1552 95.567 1 970 1 chr1A.!!$F7 969
79 TraesCS4A01G263000 chr1A 550262112 550263078 966 False 1550.000000 1550 95.567 1 970 1 chr1A.!!$F10 969
80 TraesCS4A01G263000 chr1A 355849907 355850457 550 True 464.000000 464 82.250 8986 9543 1 chr1A.!!$R11 557
81 TraesCS4A01G263000 chr1A 355822628 355823178 550 True 431.000000 431 81.129 8986 9543 1 chr1A.!!$R10 557
82 TraesCS4A01G263000 chr3D 505345527 505348023 2496 False 2880.000000 2880 87.692 5259 7752 1 chr3D.!!$F3 2493
83 TraesCS4A01G263000 chr3D 576983624 576984885 1261 True 1945.000000 1945 94.444 2545 3815 1 chr3D.!!$R2 1270
84 TraesCS4A01G263000 chr3D 39488258 39489464 1206 True 1941.000000 1941 95.778 4058 5258 1 chr3D.!!$R1 1200
85 TraesCS4A01G263000 chr3D 486462390 486463340 950 False 1482.000000 1482 94.628 2850 3815 1 chr3D.!!$F2 965
86 TraesCS4A01G263000 chr6A 221615621 221618409 2788 False 2708.000000 2708 84.626 5252 7999 1 chr6A.!!$F2 2747
87 TraesCS4A01G263000 chr6A 310627349 310629945 2596 False 1794.000000 1794 79.918 5259 7820 1 chr6A.!!$F5 2561
88 TraesCS4A01G263000 chr6A 310611744 310614340 2596 False 1740.000000 1740 79.535 5258 7820 1 chr6A.!!$F4 2562
89 TraesCS4A01G263000 chr6A 204822430 204823399 969 False 1570.000000 1570 95.876 1 970 1 chr6A.!!$F1 969
90 TraesCS4A01G263000 chr6A 84619268 84620236 968 True 1555.000000 1555 95.666 1 968 1 chr6A.!!$R2 967
91 TraesCS4A01G263000 chr6A 169165398 169166366 968 True 1552.000000 1552 95.567 1 969 1 chr6A.!!$R5 968
92 TraesCS4A01G263000 chr6A 411636508 411637376 868 False 638.000000 638 80.440 8752 9640 1 chr6A.!!$F6 888
93 TraesCS4A01G263000 chr6A 252523428 252524015 587 False 483.000000 483 81.728 9047 9640 1 chr6A.!!$F3 593
94 TraesCS4A01G263000 chr5B 27070244 27071185 941 True 1323.000000 1323 92.025 2755 3701 1 chr5B.!!$R1 946
95 TraesCS4A01G263000 chr2A 317959562 317960519 957 True 841.000000 841 82.831 7308 8285 1 chr2A.!!$R1 977
96 TraesCS4A01G263000 chr2A 363632030 363632655 625 False 420.000000 420 79.257 9008 9640 1 chr2A.!!$F2 632
97 TraesCS4A01G263000 chr2A 285649758 285650382 624 False 401.000000 401 78.825 9009 9640 1 chr2A.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 993 0.039256 CTGTGAAATTGGTGCGGTGG 60.039 55.0 0.00 0.0 0.00 4.61 F
1022 1024 0.036294 GAGGAGGGGTTGAGGTTTCG 60.036 60.0 0.00 0.0 0.00 3.46 F
1063 1065 0.180406 CCGGGGAGTAGGTGATTTGG 59.820 60.0 0.00 0.0 0.00 3.28 F
1700 1704 0.389426 GGCGAGGAGAGCGTGTTTTA 60.389 55.0 0.00 0.0 35.00 1.52 F
2478 2557 0.972983 CCCCTCTCGCTTTCTCTCCA 60.973 60.0 0.00 0.0 0.00 3.86 F
3063 3247 0.618458 ACACACACACACACCCTCTT 59.382 50.0 0.00 0.0 0.00 2.85 F
4935 5208 0.250295 CGGTCAACCAGTCCACATGT 60.250 55.0 0.00 0.0 35.14 3.21 F
5081 5354 0.390735 CCCCGCACGCTAGTAAGTTT 60.391 55.0 0.00 0.0 0.00 2.66 F
6321 6647 0.470833 ACAGTCAGAGGAGCACTGGT 60.471 55.0 3.52 0.0 41.66 4.00 F
7605 8066 0.651031 GCTGGCGATAAGGAAACGAC 59.349 55.0 0.00 0.0 35.49 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 1799 0.171007 GGACACACATCAATTGGCCG 59.829 55.000 5.42 0.0 0.00 6.13 R
2442 2495 0.539518 GGGCCAACAAGGTTTGTGTT 59.460 50.000 4.39 0.0 44.59 3.32 R
3043 3227 0.107703 AGAGGGTGTGTGTGTGTGTG 60.108 55.000 0.00 0.0 0.00 3.82 R
3044 3228 0.618458 AAGAGGGTGTGTGTGTGTGT 59.382 50.000 0.00 0.0 0.00 3.72 R
4329 4573 1.127343 GAGAGCAAGACCCCTAGCAT 58.873 55.000 0.00 0.0 0.00 3.79 R
4955 5228 2.147958 GGCCAACACACGAAGATACAA 58.852 47.619 0.00 0.0 0.00 2.41 R
5872 6183 0.613777 GGAGTCCGGGAAGTGAACAT 59.386 55.000 0.00 0.0 0.00 2.71 R
6562 6903 0.838987 TAAAGGGTGGAAGGCTCGGT 60.839 55.000 0.00 0.0 0.00 4.69 R
7836 8393 0.318360 CACGACTACTGTTGACCGCA 60.318 55.000 0.00 0.0 0.00 5.69 R
8920 9504 0.120377 ACCCTAACCCTCATCACCCA 59.880 55.000 0.00 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 2.026729 TCCAAGCACCGTAATCAATGGA 60.027 45.455 0.00 0.00 37.73 3.41
193 194 2.103263 GGGGACACGATCTCTGCTTTAT 59.897 50.000 0.00 0.00 0.00 1.40
226 227 1.741770 GAAACCGCCTCGCATGACT 60.742 57.895 0.00 0.00 0.00 3.41
368 369 5.410439 GTGGAAACTTATTTTGTAGAGCCGA 59.590 40.000 0.00 0.00 0.00 5.54
442 444 2.493278 CCTTGGAATGCCGAAGACAATT 59.507 45.455 4.04 0.00 36.79 2.32
638 640 1.893137 AGCTTGGCGATACGGATATGA 59.107 47.619 0.00 0.00 0.00 2.15
775 777 2.120312 AGCTTCTAGGGTTTAGCCTCC 58.880 52.381 3.32 0.00 37.43 4.30
776 778 2.120312 GCTTCTAGGGTTTAGCCTCCT 58.880 52.381 3.32 0.00 37.43 3.69
856 858 3.899052 TGTAGGGTTTTACCTCCATCG 57.101 47.619 0.00 0.00 42.09 3.84
894 896 3.208594 GGTAAAACTTCGTGTCCCTTGT 58.791 45.455 0.00 0.00 0.00 3.16
922 924 2.737180 CATCCGGCCTAGACGCAT 59.263 61.111 0.00 0.00 29.68 4.73
950 952 2.197875 CCCCTACCCGAGATCCGT 59.802 66.667 0.00 0.00 36.31 4.69
971 973 0.307760 GGTTTTGACACCGACAGCAG 59.692 55.000 0.00 0.00 0.00 4.24
972 974 0.317020 GTTTTGACACCGACAGCAGC 60.317 55.000 0.00 0.00 0.00 5.25
973 975 0.463654 TTTTGACACCGACAGCAGCT 60.464 50.000 0.00 0.00 0.00 4.24
974 976 1.159713 TTTGACACCGACAGCAGCTG 61.160 55.000 21.54 21.54 37.52 4.24
976 978 2.280389 ACACCGACAGCAGCTGTG 60.280 61.111 33.03 20.87 45.44 3.66
977 979 2.029518 CACCGACAGCAGCTGTGA 59.970 61.111 33.03 0.00 45.44 3.58
978 980 1.595109 CACCGACAGCAGCTGTGAA 60.595 57.895 33.03 0.00 45.44 3.18
979 981 1.146041 ACCGACAGCAGCTGTGAAA 59.854 52.632 33.03 0.00 45.44 2.69
980 982 0.250467 ACCGACAGCAGCTGTGAAAT 60.250 50.000 33.03 12.21 45.44 2.17
981 983 0.877071 CCGACAGCAGCTGTGAAATT 59.123 50.000 33.03 6.73 45.44 1.82
982 984 1.400629 CCGACAGCAGCTGTGAAATTG 60.401 52.381 33.03 11.28 45.44 2.32
983 985 1.400629 CGACAGCAGCTGTGAAATTGG 60.401 52.381 33.03 4.36 45.44 3.16
984 986 1.610522 GACAGCAGCTGTGAAATTGGT 59.389 47.619 33.03 4.21 45.44 3.67
985 987 1.338973 ACAGCAGCTGTGAAATTGGTG 59.661 47.619 27.73 5.15 43.63 4.17
986 988 2.818350 GCAGCTGTGAAATTGGTGC 58.182 52.632 16.64 0.00 45.50 5.01
987 989 1.005294 GCAGCTGTGAAATTGGTGCG 61.005 55.000 16.64 0.00 43.49 5.34
988 990 0.387622 CAGCTGTGAAATTGGTGCGG 60.388 55.000 5.25 0.00 0.00 5.69
989 991 0.823356 AGCTGTGAAATTGGTGCGGT 60.823 50.000 0.00 0.00 0.00 5.68
990 992 0.664166 GCTGTGAAATTGGTGCGGTG 60.664 55.000 0.00 0.00 0.00 4.94
991 993 0.039256 CTGTGAAATTGGTGCGGTGG 60.039 55.000 0.00 0.00 0.00 4.61
992 994 1.288752 GTGAAATTGGTGCGGTGGG 59.711 57.895 0.00 0.00 0.00 4.61
993 995 1.905843 TGAAATTGGTGCGGTGGGG 60.906 57.895 0.00 0.00 0.00 4.96
994 996 2.603171 AAATTGGTGCGGTGGGGG 60.603 61.111 0.00 0.00 0.00 5.40
995 997 3.153629 AAATTGGTGCGGTGGGGGA 62.154 57.895 0.00 0.00 0.00 4.81
996 998 3.879180 AATTGGTGCGGTGGGGGAC 62.879 63.158 0.00 0.00 0.00 4.46
1005 1007 4.489771 GTGGGGGACGCCATGGAG 62.490 72.222 18.40 16.40 42.25 3.86
1008 1010 3.866582 GGGGACGCCATGGAGGAG 61.867 72.222 18.40 5.64 43.77 3.69
1009 1011 3.866582 GGGACGCCATGGAGGAGG 61.867 72.222 18.40 0.50 42.23 4.30
1010 1012 3.866582 GGACGCCATGGAGGAGGG 61.867 72.222 18.40 0.00 42.23 4.30
1011 1013 3.866582 GACGCCATGGAGGAGGGG 61.867 72.222 18.40 0.00 42.23 4.79
1012 1014 4.741239 ACGCCATGGAGGAGGGGT 62.741 66.667 18.40 0.00 45.06 4.95
1013 1015 3.411517 CGCCATGGAGGAGGGGTT 61.412 66.667 18.40 0.00 41.22 4.11
1014 1016 2.276740 GCCATGGAGGAGGGGTTG 59.723 66.667 18.40 0.00 41.22 3.77
1015 1017 2.308722 GCCATGGAGGAGGGGTTGA 61.309 63.158 18.40 0.00 41.22 3.18
1016 1018 1.918253 CCATGGAGGAGGGGTTGAG 59.082 63.158 5.56 0.00 41.22 3.02
1017 1019 1.639635 CCATGGAGGAGGGGTTGAGG 61.640 65.000 5.56 0.00 41.22 3.86
1018 1020 0.916358 CATGGAGGAGGGGTTGAGGT 60.916 60.000 0.00 0.00 0.00 3.85
1019 1021 0.178831 ATGGAGGAGGGGTTGAGGTT 60.179 55.000 0.00 0.00 0.00 3.50
1020 1022 0.402861 TGGAGGAGGGGTTGAGGTTT 60.403 55.000 0.00 0.00 0.00 3.27
1021 1023 0.328592 GGAGGAGGGGTTGAGGTTTC 59.671 60.000 0.00 0.00 0.00 2.78
1022 1024 0.036294 GAGGAGGGGTTGAGGTTTCG 60.036 60.000 0.00 0.00 0.00 3.46
1023 1025 1.674651 GGAGGGGTTGAGGTTTCGC 60.675 63.158 0.00 0.00 0.00 4.70
1024 1026 2.032071 AGGGGTTGAGGTTTCGCG 59.968 61.111 0.00 0.00 0.00 5.87
1025 1027 3.053896 GGGGTTGAGGTTTCGCGG 61.054 66.667 6.13 0.00 0.00 6.46
1026 1028 3.733960 GGGTTGAGGTTTCGCGGC 61.734 66.667 6.13 0.00 0.00 6.53
1027 1029 2.668550 GGTTGAGGTTTCGCGGCT 60.669 61.111 6.13 0.00 0.00 5.52
1028 1030 2.677979 GGTTGAGGTTTCGCGGCTC 61.678 63.158 6.13 0.00 0.00 4.70
1029 1031 2.736995 TTGAGGTTTCGCGGCTCG 60.737 61.111 6.13 0.00 40.15 5.03
1030 1032 4.735132 TGAGGTTTCGCGGCTCGG 62.735 66.667 6.13 0.00 39.05 4.63
1040 1042 3.532155 CGGCTCGGGAGAAGGGAG 61.532 72.222 0.00 0.00 39.18 4.30
1043 1045 4.042251 CTCGGGAGAAGGGAGCTT 57.958 61.111 0.00 0.00 39.18 3.74
1044 1046 1.819905 CTCGGGAGAAGGGAGCTTC 59.180 63.158 0.00 0.00 39.18 3.86
1045 1047 1.681486 CTCGGGAGAAGGGAGCTTCC 61.681 65.000 1.27 1.27 39.18 3.46
1046 1048 2.904131 GGGAGAAGGGAGCTTCCG 59.096 66.667 5.05 0.00 37.43 4.30
1047 1049 2.736826 GGGAGAAGGGAGCTTCCGG 61.737 68.421 5.05 0.00 37.43 5.14
1048 1050 2.736826 GGAGAAGGGAGCTTCCGGG 61.737 68.421 5.05 0.00 37.43 5.73
1049 1051 2.689034 AGAAGGGAGCTTCCGGGG 60.689 66.667 5.05 0.00 37.43 5.73
1050 1052 2.687566 GAAGGGAGCTTCCGGGGA 60.688 66.667 5.05 0.00 37.43 4.81
1051 1053 2.689034 AAGGGAGCTTCCGGGGAG 60.689 66.667 5.05 0.00 37.43 4.30
1052 1054 3.564347 AAGGGAGCTTCCGGGGAGT 62.564 63.158 5.05 0.00 37.43 3.85
1053 1055 2.042230 GGGAGCTTCCGGGGAGTA 60.042 66.667 0.00 0.00 37.43 2.59
1054 1056 2.134933 GGGAGCTTCCGGGGAGTAG 61.135 68.421 0.00 0.00 37.43 2.57
1055 1057 2.134933 GGAGCTTCCGGGGAGTAGG 61.135 68.421 0.00 0.00 0.00 3.18
1056 1058 1.381463 GAGCTTCCGGGGAGTAGGT 60.381 63.158 0.00 0.00 0.00 3.08
1057 1059 1.677637 GAGCTTCCGGGGAGTAGGTG 61.678 65.000 0.00 0.00 0.00 4.00
1058 1060 1.684734 GCTTCCGGGGAGTAGGTGA 60.685 63.158 0.00 0.00 0.00 4.02
1059 1061 1.049289 GCTTCCGGGGAGTAGGTGAT 61.049 60.000 0.00 0.00 0.00 3.06
1060 1062 1.497161 CTTCCGGGGAGTAGGTGATT 58.503 55.000 0.00 0.00 0.00 2.57
1061 1063 1.838077 CTTCCGGGGAGTAGGTGATTT 59.162 52.381 0.00 0.00 0.00 2.17
1062 1064 1.200519 TCCGGGGAGTAGGTGATTTG 58.799 55.000 0.00 0.00 0.00 2.32
1063 1065 0.180406 CCGGGGAGTAGGTGATTTGG 59.820 60.000 0.00 0.00 0.00 3.28
1064 1066 0.463833 CGGGGAGTAGGTGATTTGGC 60.464 60.000 0.00 0.00 0.00 4.52
1065 1067 0.463833 GGGGAGTAGGTGATTTGGCG 60.464 60.000 0.00 0.00 0.00 5.69
1066 1068 1.095807 GGGAGTAGGTGATTTGGCGC 61.096 60.000 0.00 0.00 0.00 6.53
1067 1069 1.095807 GGAGTAGGTGATTTGGCGCC 61.096 60.000 22.73 22.73 38.73 6.53
1068 1070 1.077716 AGTAGGTGATTTGGCGCCC 60.078 57.895 26.77 9.02 39.26 6.13
1069 1071 1.377987 GTAGGTGATTTGGCGCCCA 60.378 57.895 26.77 11.12 39.26 5.36
1070 1072 1.377987 TAGGTGATTTGGCGCCCAC 60.378 57.895 26.77 23.46 39.26 4.61
1509 1512 3.381335 TCTACCCCTACCTTTAGGCTTG 58.619 50.000 0.00 0.00 43.56 4.01
1562 1565 6.127140 GGGGATAGTAGAGTAACTTTGCTTCA 60.127 42.308 0.00 0.00 0.00 3.02
1625 1628 4.142773 CGTGTTTTGAAATATAGTGGGCGT 60.143 41.667 0.00 0.00 0.00 5.68
1626 1629 5.329493 GTGTTTTGAAATATAGTGGGCGTC 58.671 41.667 0.00 0.00 0.00 5.19
1647 1651 1.141019 CGATTTCGGGCGAGGAGAA 59.859 57.895 0.00 0.00 35.37 2.87
1666 1670 5.237779 GGAGAACGTGTTTTGAAATAGTGGA 59.762 40.000 0.00 0.00 0.00 4.02
1700 1704 0.389426 GGCGAGGAGAGCGTGTTTTA 60.389 55.000 0.00 0.00 35.00 1.52
1751 1755 1.472878 TGTCATTTCGACCGAGGAGAG 59.527 52.381 0.00 0.00 44.71 3.20
1795 1799 2.105766 ACCTACCCTCGATGTACAACC 58.894 52.381 0.00 0.00 0.00 3.77
1924 1928 1.134699 GGAGAATGAGCATCCACGTCA 60.135 52.381 0.00 0.00 33.08 4.35
1972 1979 7.887996 TTTTGAAATATTAGCTTGCCACTTG 57.112 32.000 0.00 0.00 0.00 3.16
2010 2017 2.107366 TGATGCTCGGGAGTAATGTGA 58.893 47.619 0.00 0.00 0.00 3.58
2043 2050 5.059465 GCTCGTTGCTAGCGATTTACTATAC 59.941 44.000 8.20 0.00 37.74 1.47
2068 2075 7.229907 ACGACAAATAGTTGACCCACTAAAAAT 59.770 33.333 10.35 0.00 38.20 1.82
2070 2077 7.892609 ACAAATAGTTGACCCACTAAAAATCC 58.107 34.615 10.35 0.00 38.20 3.01
2094 2101 6.534793 CCGGAATCAAACCCAAAATGAAATAG 59.465 38.462 0.00 0.00 0.00 1.73
2327 2334 7.060633 GCAAGTTTATGTCGAAACATGGTTTAG 59.939 37.037 0.00 0.00 45.72 1.85
2442 2495 1.960417 TTCTGTCGCACACATCCAAA 58.040 45.000 0.00 0.00 33.23 3.28
2477 2556 1.819905 CCCCTCTCGCTTTCTCTCC 59.180 63.158 0.00 0.00 0.00 3.71
2478 2557 0.972983 CCCCTCTCGCTTTCTCTCCA 60.973 60.000 0.00 0.00 0.00 3.86
2651 2757 1.352156 GCTCGTTGCCCGTAACTCTG 61.352 60.000 0.00 0.00 37.94 3.35
2665 2771 1.373497 CTCTGTCACGCACCACTCC 60.373 63.158 0.00 0.00 0.00 3.85
2753 2887 4.613850 GCATATCTCACTCGCACTCGATAA 60.614 45.833 0.00 0.00 44.56 1.75
2799 2935 2.422803 CCCTCGTTCTCTCTCCATCTCT 60.423 54.545 0.00 0.00 0.00 3.10
2801 2941 3.433598 CCTCGTTCTCTCTCCATCTCTCT 60.434 52.174 0.00 0.00 0.00 3.10
2803 2945 3.454447 TCGTTCTCTCTCCATCTCTCTCT 59.546 47.826 0.00 0.00 0.00 3.10
2811 2959 2.087646 TCCATCTCTCTCTCACACACG 58.912 52.381 0.00 0.00 0.00 4.49
3035 3219 2.817258 CGAGGGGATCTCTCTATCACAC 59.183 54.545 12.39 0.00 40.30 3.82
3036 3220 3.748989 CGAGGGGATCTCTCTATCACACA 60.749 52.174 12.39 0.00 40.30 3.72
3037 3221 3.571590 AGGGGATCTCTCTATCACACAC 58.428 50.000 0.00 0.00 30.35 3.82
3038 3222 3.052566 AGGGGATCTCTCTATCACACACA 60.053 47.826 0.00 0.00 30.35 3.72
3039 3223 3.068873 GGGGATCTCTCTATCACACACAC 59.931 52.174 0.00 0.00 30.35 3.82
3040 3224 3.701542 GGGATCTCTCTATCACACACACA 59.298 47.826 0.00 0.00 0.00 3.72
3041 3225 4.440802 GGGATCTCTCTATCACACACACAC 60.441 50.000 0.00 0.00 0.00 3.82
3042 3226 4.158579 GGATCTCTCTATCACACACACACA 59.841 45.833 0.00 0.00 0.00 3.72
3043 3227 4.505313 TCTCTCTATCACACACACACAC 57.495 45.455 0.00 0.00 0.00 3.82
3044 3228 3.888930 TCTCTCTATCACACACACACACA 59.111 43.478 0.00 0.00 0.00 3.72
3045 3229 3.977427 TCTCTATCACACACACACACAC 58.023 45.455 0.00 0.00 0.00 3.82
3046 3230 3.383185 TCTCTATCACACACACACACACA 59.617 43.478 0.00 0.00 0.00 3.72
3047 3231 3.453424 TCTATCACACACACACACACAC 58.547 45.455 0.00 0.00 0.00 3.82
3048 3232 2.106477 ATCACACACACACACACACA 57.894 45.000 0.00 0.00 0.00 3.72
3049 3233 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
3050 3234 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3051 3235 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3063 3247 0.618458 ACACACACACACACCCTCTT 59.382 50.000 0.00 0.00 0.00 2.85
3219 3412 1.072331 TCTCCTCGCCTTGCTTTTCTT 59.928 47.619 0.00 0.00 0.00 2.52
3394 3616 2.024825 GCACTCTCCTCGGTCCATAGT 61.025 57.143 0.00 0.00 0.00 2.12
3570 3806 4.742438 TGCGTAAACCTGATCAAAGTTC 57.258 40.909 10.37 1.18 0.00 3.01
4148 4392 6.483640 CCATCCATACGTCTATCTCGATATCA 59.516 42.308 3.12 0.00 0.00 2.15
4152 4396 6.535508 CCATACGTCTATCTCGATATCACTCA 59.464 42.308 3.12 0.00 0.00 3.41
4240 4484 3.404081 TCCAGGGGATCTCTCTATGACAT 59.596 47.826 0.00 0.00 0.00 3.06
4258 4502 6.007485 TGACATACATACACTCTCTCCTCT 57.993 41.667 0.00 0.00 0.00 3.69
4260 4504 6.126623 TGACATACATACACTCTCTCCTCTCT 60.127 42.308 0.00 0.00 0.00 3.10
4263 4507 9.106977 ACATACATACACTCTCTCCTCTCTATA 57.893 37.037 0.00 0.00 0.00 1.31
4329 4573 2.121963 AGACCCCTCTTGGCCACA 60.122 61.111 3.88 0.00 0.00 4.17
4534 4792 6.957631 TCTATTTCACTCACTCTCTCTCTCT 58.042 40.000 0.00 0.00 0.00 3.10
4535 4793 7.047891 TCTATTTCACTCACTCTCTCTCTCTC 58.952 42.308 0.00 0.00 0.00 3.20
4558 4822 5.908831 TCTCTCTAGTTAGGGACTCTCTCAT 59.091 44.000 0.00 0.00 41.75 2.90
4805 5076 2.822707 ACGGAGGGAGTAGCTCTTTA 57.177 50.000 0.00 0.00 0.00 1.85
4882 5155 1.407618 ACGGATTATGCGCTCACTGTA 59.592 47.619 9.73 0.00 33.30 2.74
4935 5208 0.250295 CGGTCAACCAGTCCACATGT 60.250 55.000 0.00 0.00 35.14 3.21
4938 5211 2.297701 GTCAACCAGTCCACATGTTGT 58.702 47.619 0.00 0.00 39.22 3.32
4955 5228 2.309528 TGTCTTGTCAGCTCGTGTTT 57.690 45.000 0.00 0.00 0.00 2.83
5016 5289 8.113462 TGAAAATAAGTAAACTAGAGGCCCATT 58.887 33.333 0.00 0.00 0.00 3.16
5078 5351 1.518572 CACCCCGCACGCTAGTAAG 60.519 63.158 0.00 0.00 0.00 2.34
5081 5354 0.390735 CCCCGCACGCTAGTAAGTTT 60.391 55.000 0.00 0.00 0.00 2.66
5143 5416 2.299013 ACTCTCGCACAATTCACCACTA 59.701 45.455 0.00 0.00 0.00 2.74
5267 5544 1.791103 GCCAACAAGCTGTAACGCCA 61.791 55.000 0.00 0.00 0.00 5.69
5468 5757 2.165167 ACAATCAAGGTCCGACTACGA 58.835 47.619 0.00 0.00 42.66 3.43
5471 5760 2.712057 TCAAGGTCCGACTACGAAAC 57.288 50.000 0.00 0.00 42.66 2.78
5512 5807 3.726859 ACCCCAAATGCTAGATCCCAATA 59.273 43.478 0.00 0.00 0.00 1.90
5541 5837 2.237143 CTGGGCTCCACTACTGATCAAA 59.763 50.000 0.00 0.00 0.00 2.69
5604 5902 1.270094 CCACTTGAGCTCGGTTGTGTA 60.270 52.381 19.37 0.00 0.00 2.90
5636 5936 0.541392 ATCATCGGCACCTGCAACTA 59.459 50.000 0.00 0.00 44.36 2.24
5650 5952 5.044846 ACCTGCAACTATTTGGAAGTATCCT 60.045 40.000 0.00 0.00 46.70 3.24
5709 6011 8.431593 CGAGATCAAGACTATTTAAGCTTATGC 58.568 37.037 7.08 0.00 40.05 3.14
5739 6043 7.181125 GGATAAGGTAATGAGGTGGATCTACAT 59.819 40.741 11.67 3.36 0.00 2.29
5748 6054 1.863454 GTGGATCTACATCAAGCGCTG 59.137 52.381 12.58 5.47 0.00 5.18
5808 6115 1.495584 GAGAAGCAACGCAACGGTCA 61.496 55.000 0.00 0.00 0.00 4.02
5851 6160 7.540474 AGAAGTGATCCTGAAACTACTTACA 57.460 36.000 0.00 0.00 0.00 2.41
5916 6227 3.738281 CGAAAAGAGACCATCACGGCTAT 60.738 47.826 0.00 0.00 39.03 2.97
5939 6250 2.341168 CACGCGGTTGATGCATTTTAAC 59.659 45.455 12.47 7.23 0.00 2.01
6031 6346 6.318144 CACGACTCTCAGAAGTTTATACCCTA 59.682 42.308 0.00 0.00 0.00 3.53
6032 6347 7.013464 CACGACTCTCAGAAGTTTATACCCTAT 59.987 40.741 0.00 0.00 0.00 2.57
6321 6647 0.470833 ACAGTCAGAGGAGCACTGGT 60.471 55.000 3.52 0.00 41.66 4.00
6353 6685 8.977412 GGGATTAAAATAAAGATGACCCTTGAA 58.023 33.333 0.00 0.00 0.00 2.69
6385 6717 4.296583 ACCCAAGGGAAAAGGTATATGGTT 59.703 41.667 13.15 0.00 38.96 3.67
6488 6826 3.814234 ACACCCAACCGTGTAAGGAACT 61.814 50.000 0.00 0.00 45.08 3.01
6500 6839 5.238650 CGTGTAAGGAACTCAAAATCAAGGT 59.761 40.000 0.00 0.00 38.49 3.50
6562 6903 3.368948 GGAACAAAACACCAGGCAAAAGA 60.369 43.478 0.00 0.00 0.00 2.52
6596 6937 8.808240 TCCACCCTTTACCAAGTATATAGATT 57.192 34.615 0.00 0.00 0.00 2.40
6821 7213 1.328439 GCGACATAGCGATAGAACGG 58.672 55.000 0.00 0.00 39.76 4.44
6870 7264 4.837093 TTTCGAGGGTATGGTCATCTTT 57.163 40.909 0.00 0.00 0.00 2.52
6882 7276 2.774234 GGTCATCTTTCCTGAGATCCCA 59.226 50.000 0.00 0.00 34.20 4.37
6911 7305 5.413309 AGAAGAACGAGTCCATGAAGAAT 57.587 39.130 0.00 0.00 0.00 2.40
6953 7357 3.613193 CGAATACTCACAACTCCGGAACA 60.613 47.826 5.23 0.00 0.00 3.18
6990 7394 2.879026 AGAGAAGCAACCCGAAAAGAAC 59.121 45.455 0.00 0.00 0.00 3.01
7023 7430 7.175816 ACATGGTAAACACACAAGCATAACATA 59.824 33.333 0.00 0.00 30.63 2.29
7251 7668 9.727859 TGAGTAAAATACACAGTTAGGCATTTA 57.272 29.630 0.00 0.00 0.00 1.40
7501 7938 1.604755 CAACATTCCGGTTCCGACAAA 59.395 47.619 13.08 4.74 0.00 2.83
7528 7970 3.623060 TGAGATATCGGTGCAAAAGAAGC 59.377 43.478 0.00 0.00 0.00 3.86
7529 7971 3.609853 AGATATCGGTGCAAAAGAAGCA 58.390 40.909 0.00 0.00 40.19 3.91
7530 7972 4.009675 AGATATCGGTGCAAAAGAAGCAA 58.990 39.130 0.00 0.00 44.64 3.91
7605 8066 0.651031 GCTGGCGATAAGGAAACGAC 59.349 55.000 0.00 0.00 35.49 4.34
7607 8068 1.927174 CTGGCGATAAGGAAACGACTG 59.073 52.381 0.00 0.00 35.96 3.51
7608 8069 1.546923 TGGCGATAAGGAAACGACTGA 59.453 47.619 0.00 0.00 35.96 3.41
7609 8070 1.925185 GGCGATAAGGAAACGACTGAC 59.075 52.381 0.00 0.00 31.96 3.51
7610 8071 2.602878 GCGATAAGGAAACGACTGACA 58.397 47.619 0.00 0.00 0.00 3.58
7766 8273 1.443194 TTGTTCTCGCGACGGTAGC 60.443 57.895 3.71 2.90 0.00 3.58
7813 8370 0.664761 TTCACGTTCGTTCGGAGAGT 59.335 50.000 0.00 0.00 38.43 3.24
7836 8393 2.108952 ACTTGATGACTCCAAGCCCTTT 59.891 45.455 0.00 0.00 43.45 3.11
7937 8494 0.787173 CGTGTCTTCGTCGACGGTAC 60.787 60.000 35.05 27.80 40.29 3.34
8001 8561 0.036765 GGGCGTCATGGTACTTGTCA 60.037 55.000 0.00 0.00 0.00 3.58
8045 8607 4.218312 ACATTTTGAAGAGGAACTTGGCT 58.782 39.130 0.00 0.00 41.55 4.75
8127 8689 1.418637 GGGGTCAACAGTAGTGGAACA 59.581 52.381 1.92 0.00 37.11 3.18
8147 8709 3.245730 ACATGGTGTTCCCTGATTTGGAT 60.246 43.478 0.00 0.00 34.26 3.41
8173 8735 0.730840 GACAACGATAAAAGGGGCCG 59.269 55.000 0.00 0.00 0.00 6.13
8502 9066 3.717294 GGAAGAGGAGCCCGGCAA 61.717 66.667 13.15 0.00 0.00 4.52
8525 9089 2.353610 GCTAACGGAGGGGGAACGA 61.354 63.158 0.00 0.00 0.00 3.85
8532 9096 3.009714 AGGGGGAACGAAGGAGGC 61.010 66.667 0.00 0.00 0.00 4.70
8675 9256 2.579787 CGACGACGATGGTGCTCC 60.580 66.667 0.00 0.00 42.66 4.70
8685 9266 1.915266 TGGTGCTCCACTCCTCCTG 60.915 63.158 2.64 0.00 39.03 3.86
8697 9278 2.363018 CTCCTGGTGCTCCTCCGA 60.363 66.667 6.34 0.00 34.23 4.55
8784 9366 1.535202 AGGAGGATGAGGGGATCGC 60.535 63.158 0.06 0.06 0.00 4.58
8841 9425 2.586792 GCGGCACAGGAGGAGAAT 59.413 61.111 0.00 0.00 0.00 2.40
8929 9513 1.632018 GGGGGTCGATTGGGTGATGA 61.632 60.000 0.00 0.00 0.00 2.92
8951 9535 0.108019 GTTAGGGTTAGGATGGGCCG 59.892 60.000 0.00 0.00 43.43 6.13
8953 9537 2.900269 TAGGGTTAGGATGGGCCGCA 62.900 60.000 0.00 0.00 43.43 5.69
8981 9565 1.126948 CCAAGTGCCATGGGGGTTTT 61.127 55.000 15.13 0.00 39.65 2.43
9071 9656 9.080915 CAGAAGAAAACAAAGAAGAAGAAAAGG 57.919 33.333 0.00 0.00 0.00 3.11
9073 9658 8.988064 AAGAAAACAAAGAAGAAGAAAAGGAC 57.012 30.769 0.00 0.00 0.00 3.85
9133 9751 6.322969 GGGTAATTTTCCCGGACTCATAAAAT 59.677 38.462 0.73 2.64 35.27 1.82
9259 9878 4.751767 AGTGCCCAAAAATGTTGAGAAA 57.248 36.364 0.00 0.00 0.00 2.52
9332 9954 5.238432 GGAACCAAAATTGAAGCGGAAAAAT 59.762 36.000 0.00 0.00 0.00 1.82
9361 9984 9.709495 ATGTGATTATTTGCAAGTGTGTTTATT 57.291 25.926 4.47 0.00 0.00 1.40
9366 9989 3.724508 TGCAAGTGTGTTTATTGGTGG 57.275 42.857 0.00 0.00 0.00 4.61
9470 10097 6.415206 TCCCTCGGTTTAAATAGATCGAAT 57.585 37.500 0.00 0.00 0.00 3.34
9543 10183 1.232119 TGATGACATGATGCGATGCC 58.768 50.000 0.00 0.00 0.00 4.40
9577 10217 3.724508 TGAATGCAACGAACCAAACAT 57.275 38.095 0.00 0.00 0.00 2.71
9599 10239 1.135774 TCACACGACGAATCTCGGAAG 60.136 52.381 0.00 0.00 45.59 3.46
9605 10245 0.824109 ACGAATCTCGGAAGCCATGA 59.176 50.000 0.00 0.00 45.59 3.07
9609 10249 3.535561 GAATCTCGGAAGCCATGAAAGA 58.464 45.455 0.00 0.00 0.00 2.52
9613 10253 3.450817 TCTCGGAAGCCATGAAAGACATA 59.549 43.478 0.00 0.00 37.46 2.29
9620 10260 2.555757 GCCATGAAAGACATATGGAGCC 59.444 50.000 7.80 0.00 43.15 4.70
9622 10262 3.435457 CCATGAAAGACATATGGAGCCCA 60.435 47.826 7.80 0.04 43.15 5.36
9623 10263 4.209538 CATGAAAGACATATGGAGCCCAA 58.790 43.478 7.80 0.00 35.35 4.12
9640 10280 0.606401 CAAGTCTTGGGGCGTCACAT 60.606 55.000 0.00 0.00 0.00 3.21
9641 10281 0.981183 AAGTCTTGGGGCGTCACATA 59.019 50.000 0.00 0.00 0.00 2.29
9642 10282 0.981183 AGTCTTGGGGCGTCACATAA 59.019 50.000 0.00 0.00 0.00 1.90
9643 10283 1.066143 AGTCTTGGGGCGTCACATAAG 60.066 52.381 0.00 0.00 0.00 1.73
9644 10284 0.392461 TCTTGGGGCGTCACATAAGC 60.392 55.000 0.00 0.00 0.00 3.09
9645 10285 0.676466 CTTGGGGCGTCACATAAGCA 60.676 55.000 0.00 0.00 33.76 3.91
9646 10286 0.676466 TTGGGGCGTCACATAAGCAG 60.676 55.000 0.00 0.00 33.76 4.24
9647 10287 1.220749 GGGGCGTCACATAAGCAGA 59.779 57.895 0.00 0.00 33.76 4.26
9648 10288 0.811616 GGGGCGTCACATAAGCAGAG 60.812 60.000 0.00 0.00 33.76 3.35
9649 10289 0.811616 GGGCGTCACATAAGCAGAGG 60.812 60.000 0.00 0.00 33.76 3.69
9650 10290 1.432270 GGCGTCACATAAGCAGAGGC 61.432 60.000 0.00 0.00 41.10 4.70
9669 10309 3.353836 GCTCGAGCCAAAACCGCA 61.354 61.111 27.22 0.00 34.31 5.69
9670 10310 2.690778 GCTCGAGCCAAAACCGCAT 61.691 57.895 27.22 0.00 34.31 4.73
9671 10311 1.425428 CTCGAGCCAAAACCGCATC 59.575 57.895 0.00 0.00 0.00 3.91
9672 10312 1.982073 CTCGAGCCAAAACCGCATCC 61.982 60.000 0.00 0.00 0.00 3.51
9673 10313 2.485122 GAGCCAAAACCGCATCCG 59.515 61.111 0.00 0.00 0.00 4.18
9685 10325 4.899239 CATCCGGCGAGCCTGGAC 62.899 72.222 22.81 0.00 39.93 4.02
9688 10328 4.821589 CCGGCGAGCCTGGACTTC 62.822 72.222 9.30 0.00 33.64 3.01
9689 10329 4.069232 CGGCGAGCCTGGACTTCA 62.069 66.667 12.70 0.00 0.00 3.02
9690 10330 2.586792 GGCGAGCCTGGACTTCAT 59.413 61.111 6.90 0.00 0.00 2.57
9691 10331 1.522580 GGCGAGCCTGGACTTCATC 60.523 63.158 6.90 0.00 0.00 2.92
9692 10332 1.219124 GCGAGCCTGGACTTCATCA 59.781 57.895 0.00 0.00 0.00 3.07
9693 10333 0.809241 GCGAGCCTGGACTTCATCAG 60.809 60.000 0.00 0.00 0.00 2.90
9694 10334 0.809241 CGAGCCTGGACTTCATCAGC 60.809 60.000 0.00 0.00 0.00 4.26
9695 10335 0.251354 GAGCCTGGACTTCATCAGCA 59.749 55.000 0.00 0.00 0.00 4.41
9696 10336 0.252479 AGCCTGGACTTCATCAGCAG 59.748 55.000 0.00 0.00 0.00 4.24
9697 10337 1.375098 GCCTGGACTTCATCAGCAGC 61.375 60.000 0.00 0.00 0.00 5.25
9698 10338 0.747283 CCTGGACTTCATCAGCAGCC 60.747 60.000 0.00 0.00 0.00 4.85
9699 10339 0.252479 CTGGACTTCATCAGCAGCCT 59.748 55.000 0.00 0.00 0.00 4.58
9700 10340 0.251354 TGGACTTCATCAGCAGCCTC 59.749 55.000 0.00 0.00 0.00 4.70
9701 10341 0.463474 GGACTTCATCAGCAGCCTCC 60.463 60.000 0.00 0.00 0.00 4.30
9702 10342 0.463474 GACTTCATCAGCAGCCTCCC 60.463 60.000 0.00 0.00 0.00 4.30
9703 10343 1.153005 CTTCATCAGCAGCCTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
9704 10344 2.937379 CTTCATCAGCAGCCTCCCCG 62.937 65.000 0.00 0.00 0.00 5.73
9705 10345 3.473647 CATCAGCAGCCTCCCCGA 61.474 66.667 0.00 0.00 0.00 5.14
9706 10346 2.447379 ATCAGCAGCCTCCCCGAT 60.447 61.111 0.00 0.00 0.00 4.18
9707 10347 2.815945 ATCAGCAGCCTCCCCGATG 61.816 63.158 0.00 0.00 0.00 3.84
9708 10348 3.473647 CAGCAGCCTCCCCGATGA 61.474 66.667 0.00 0.00 0.00 2.92
9709 10349 3.474570 AGCAGCCTCCCCGATGAC 61.475 66.667 0.00 0.00 0.00 3.06
9710 10350 3.785859 GCAGCCTCCCCGATGACA 61.786 66.667 0.00 0.00 0.00 3.58
9711 10351 3.112205 GCAGCCTCCCCGATGACAT 62.112 63.158 0.00 0.00 0.00 3.06
9712 10352 1.227764 CAGCCTCCCCGATGACATG 60.228 63.158 0.00 0.00 0.00 3.21
9713 10353 2.592861 GCCTCCCCGATGACATGC 60.593 66.667 0.00 0.00 0.00 4.06
9714 10354 3.112205 GCCTCCCCGATGACATGCT 62.112 63.158 0.00 0.00 0.00 3.79
9715 10355 1.227764 CCTCCCCGATGACATGCTG 60.228 63.158 0.00 0.00 0.00 4.41
9716 10356 1.890979 CTCCCCGATGACATGCTGC 60.891 63.158 0.00 0.00 0.00 5.25
9717 10357 2.191375 CCCCGATGACATGCTGCT 59.809 61.111 0.00 0.00 0.00 4.24
9718 10358 1.890979 CCCCGATGACATGCTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
9719 10359 1.153309 CCCGATGACATGCTGCTCA 60.153 57.895 0.00 0.00 0.00 4.26
9720 10360 0.534427 CCCGATGACATGCTGCTCAT 60.534 55.000 0.00 1.52 35.31 2.90
9721 10361 0.866427 CCGATGACATGCTGCTCATC 59.134 55.000 16.23 16.23 39.57 2.92
9722 10362 1.578583 CGATGACATGCTGCTCATCA 58.421 50.000 22.33 14.04 42.00 3.07
9723 10363 2.143925 CGATGACATGCTGCTCATCAT 58.856 47.619 22.33 17.16 42.00 2.45
9724 10364 2.157863 CGATGACATGCTGCTCATCATC 59.842 50.000 22.33 21.50 42.00 2.92
9725 10365 2.702592 TGACATGCTGCTCATCATCA 57.297 45.000 0.00 0.00 31.79 3.07
9726 10366 3.208747 TGACATGCTGCTCATCATCAT 57.791 42.857 0.00 0.00 32.17 2.45
9727 10367 3.139077 TGACATGCTGCTCATCATCATC 58.861 45.455 0.00 0.00 29.73 2.92
9728 10368 2.143925 ACATGCTGCTCATCATCATCG 58.856 47.619 0.00 0.00 29.73 3.84
9729 10369 1.464997 CATGCTGCTCATCATCATCGG 59.535 52.381 0.00 0.00 29.73 4.18
9730 10370 0.883370 TGCTGCTCATCATCATCGGC 60.883 55.000 0.00 0.00 0.00 5.54
9731 10371 1.575576 GCTGCTCATCATCATCGGCC 61.576 60.000 0.00 0.00 0.00 6.13
9732 10372 0.035036 CTGCTCATCATCATCGGCCT 59.965 55.000 0.00 0.00 0.00 5.19
9733 10373 0.034476 TGCTCATCATCATCGGCCTC 59.966 55.000 0.00 0.00 0.00 4.70
9734 10374 0.673022 GCTCATCATCATCGGCCTCC 60.673 60.000 0.00 0.00 0.00 4.30
9735 10375 0.975135 CTCATCATCATCGGCCTCCT 59.025 55.000 0.00 0.00 0.00 3.69
9736 10376 0.972134 TCATCATCATCGGCCTCCTC 59.028 55.000 0.00 0.00 0.00 3.71
9737 10377 0.036577 CATCATCATCGGCCTCCTCC 60.037 60.000 0.00 0.00 0.00 4.30
9738 10378 1.197430 ATCATCATCGGCCTCCTCCC 61.197 60.000 0.00 0.00 0.00 4.30
9739 10379 2.527875 ATCATCGGCCTCCTCCCC 60.528 66.667 0.00 0.00 0.00 4.81
9740 10380 3.410788 ATCATCGGCCTCCTCCCCA 62.411 63.158 0.00 0.00 0.00 4.96
9741 10381 3.866582 CATCGGCCTCCTCCCCAC 61.867 72.222 0.00 0.00 0.00 4.61
9745 10385 3.264845 GGCCTCCTCCCCACCAAA 61.265 66.667 0.00 0.00 0.00 3.28
9746 10386 2.626467 GGCCTCCTCCCCACCAAAT 61.626 63.158 0.00 0.00 0.00 2.32
9747 10387 1.076705 GCCTCCTCCCCACCAAATC 60.077 63.158 0.00 0.00 0.00 2.17
9748 10388 1.575447 GCCTCCTCCCCACCAAATCT 61.575 60.000 0.00 0.00 0.00 2.40
9749 10389 0.257039 CCTCCTCCCCACCAAATCTG 59.743 60.000 0.00 0.00 0.00 2.90
9750 10390 0.394899 CTCCTCCCCACCAAATCTGC 60.395 60.000 0.00 0.00 0.00 4.26
9751 10391 1.380380 CCTCCCCACCAAATCTGCC 60.380 63.158 0.00 0.00 0.00 4.85
9752 10392 1.383799 CTCCCCACCAAATCTGCCA 59.616 57.895 0.00 0.00 0.00 4.92
9753 10393 0.032813 CTCCCCACCAAATCTGCCAT 60.033 55.000 0.00 0.00 0.00 4.40
9754 10394 0.324552 TCCCCACCAAATCTGCCATG 60.325 55.000 0.00 0.00 0.00 3.66
9755 10395 1.518774 CCCACCAAATCTGCCATGC 59.481 57.895 0.00 0.00 0.00 4.06
9756 10396 1.140161 CCACCAAATCTGCCATGCG 59.860 57.895 0.00 0.00 0.00 4.73
9757 10397 1.140161 CACCAAATCTGCCATGCGG 59.860 57.895 0.00 0.00 36.06 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 5.416271 TTGGAGATAAGCGAGTTTTACCT 57.584 39.130 0.00 0.00 0.00 3.08
193 194 1.305201 GTTTCCTTGGCACGTCTTGA 58.695 50.000 0.00 0.00 0.00 3.02
226 227 3.517296 TTTATTGTCCCACCTCAGCAA 57.483 42.857 0.00 0.00 0.00 3.91
330 331 9.592196 AATAAGTTTCCACATATTGCCATAGAT 57.408 29.630 0.00 0.00 27.91 1.98
426 428 1.913403 CGCAAATTGTCTTCGGCATTC 59.087 47.619 0.00 0.00 0.00 2.67
638 640 4.960469 TCGGTTACAATGGTAGGAGATCTT 59.040 41.667 0.00 0.00 0.00 2.40
732 734 6.093219 GCTAGCCTATGGTATGATTGTTGATG 59.907 42.308 2.29 0.00 0.00 3.07
734 736 5.307976 AGCTAGCCTATGGTATGATTGTTGA 59.692 40.000 12.13 0.00 0.00 3.18
856 858 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
971 973 0.664166 CACCGCACCAATTTCACAGC 60.664 55.000 0.00 0.00 0.00 4.40
972 974 0.039256 CCACCGCACCAATTTCACAG 60.039 55.000 0.00 0.00 0.00 3.66
973 975 1.459455 CCCACCGCACCAATTTCACA 61.459 55.000 0.00 0.00 0.00 3.58
974 976 1.288752 CCCACCGCACCAATTTCAC 59.711 57.895 0.00 0.00 0.00 3.18
975 977 1.905843 CCCCACCGCACCAATTTCA 60.906 57.895 0.00 0.00 0.00 2.69
976 978 2.645192 CCCCCACCGCACCAATTTC 61.645 63.158 0.00 0.00 0.00 2.17
977 979 2.603171 CCCCCACCGCACCAATTT 60.603 61.111 0.00 0.00 0.00 1.82
978 980 3.585428 TCCCCCACCGCACCAATT 61.585 61.111 0.00 0.00 0.00 2.32
979 981 4.360405 GTCCCCCACCGCACCAAT 62.360 66.667 0.00 0.00 0.00 3.16
988 990 4.489771 CTCCATGGCGTCCCCCAC 62.490 72.222 6.96 0.00 37.79 4.61
991 993 3.866582 CTCCTCCATGGCGTCCCC 61.867 72.222 6.96 0.00 35.26 4.81
992 994 3.866582 CCTCCTCCATGGCGTCCC 61.867 72.222 6.96 0.00 35.26 4.46
993 995 3.866582 CCCTCCTCCATGGCGTCC 61.867 72.222 6.96 0.00 35.26 4.79
994 996 3.866582 CCCCTCCTCCATGGCGTC 61.867 72.222 6.96 0.00 35.26 5.19
995 997 4.741239 ACCCCTCCTCCATGGCGT 62.741 66.667 6.96 0.00 35.26 5.68
996 998 3.411517 AACCCCTCCTCCATGGCG 61.412 66.667 6.96 0.00 35.26 5.69
997 999 2.276309 CTCAACCCCTCCTCCATGGC 62.276 65.000 6.96 0.00 35.26 4.40
998 1000 1.639635 CCTCAACCCCTCCTCCATGG 61.640 65.000 4.97 4.97 37.10 3.66
999 1001 0.916358 ACCTCAACCCCTCCTCCATG 60.916 60.000 0.00 0.00 0.00 3.66
1000 1002 0.178831 AACCTCAACCCCTCCTCCAT 60.179 55.000 0.00 0.00 0.00 3.41
1001 1003 0.402861 AAACCTCAACCCCTCCTCCA 60.403 55.000 0.00 0.00 0.00 3.86
1002 1004 0.328592 GAAACCTCAACCCCTCCTCC 59.671 60.000 0.00 0.00 0.00 4.30
1003 1005 0.036294 CGAAACCTCAACCCCTCCTC 60.036 60.000 0.00 0.00 0.00 3.71
1004 1006 2.067197 CGAAACCTCAACCCCTCCT 58.933 57.895 0.00 0.00 0.00 3.69
1005 1007 1.674651 GCGAAACCTCAACCCCTCC 60.675 63.158 0.00 0.00 0.00 4.30
1006 1008 2.033194 CGCGAAACCTCAACCCCTC 61.033 63.158 0.00 0.00 0.00 4.30
1007 1009 2.032071 CGCGAAACCTCAACCCCT 59.968 61.111 0.00 0.00 0.00 4.79
1008 1010 3.053896 CCGCGAAACCTCAACCCC 61.054 66.667 8.23 0.00 0.00 4.95
1009 1011 3.733960 GCCGCGAAACCTCAACCC 61.734 66.667 8.23 0.00 0.00 4.11
1010 1012 2.668550 AGCCGCGAAACCTCAACC 60.669 61.111 8.23 0.00 0.00 3.77
1011 1013 2.861006 GAGCCGCGAAACCTCAAC 59.139 61.111 8.23 0.00 0.00 3.18
1012 1014 2.736995 CGAGCCGCGAAACCTCAA 60.737 61.111 8.23 0.00 44.57 3.02
1013 1015 4.735132 CCGAGCCGCGAAACCTCA 62.735 66.667 8.23 0.00 44.57 3.86
1017 1019 3.927163 TTCTCCCGAGCCGCGAAAC 62.927 63.158 8.23 0.00 44.57 2.78
1018 1020 3.642778 CTTCTCCCGAGCCGCGAAA 62.643 63.158 8.23 0.00 44.57 3.46
1019 1021 4.129737 CTTCTCCCGAGCCGCGAA 62.130 66.667 8.23 0.00 44.57 4.70
1023 1025 3.532155 CTCCCTTCTCCCGAGCCG 61.532 72.222 0.00 0.00 0.00 5.52
1024 1026 3.855853 GCTCCCTTCTCCCGAGCC 61.856 72.222 0.00 0.00 42.59 4.70
1026 1028 1.681486 GGAAGCTCCCTTCTCCCGAG 61.681 65.000 3.76 0.00 45.44 4.63
1027 1029 1.686110 GGAAGCTCCCTTCTCCCGA 60.686 63.158 3.76 0.00 45.44 5.14
1028 1030 2.904131 GGAAGCTCCCTTCTCCCG 59.096 66.667 3.76 0.00 45.44 5.14
1029 1031 2.736826 CCGGAAGCTCCCTTCTCCC 61.737 68.421 0.00 0.00 45.44 4.30
1030 1032 2.736826 CCCGGAAGCTCCCTTCTCC 61.737 68.421 0.73 0.00 45.44 3.71
1031 1033 2.736826 CCCCGGAAGCTCCCTTCTC 61.737 68.421 0.73 0.00 45.44 2.87
1032 1034 2.689034 CCCCGGAAGCTCCCTTCT 60.689 66.667 0.73 0.00 45.44 2.85
1033 1035 2.687566 TCCCCGGAAGCTCCCTTC 60.688 66.667 0.73 0.00 45.41 3.46
1034 1036 2.177529 TACTCCCCGGAAGCTCCCTT 62.178 60.000 0.73 0.00 31.13 3.95
1035 1037 2.591193 CTACTCCCCGGAAGCTCCCT 62.591 65.000 0.73 0.00 31.13 4.20
1036 1038 2.042230 TACTCCCCGGAAGCTCCC 60.042 66.667 0.73 0.00 31.13 4.30
1037 1039 2.134933 CCTACTCCCCGGAAGCTCC 61.135 68.421 0.73 0.00 0.00 4.70
1038 1040 1.381463 ACCTACTCCCCGGAAGCTC 60.381 63.158 0.73 0.00 0.00 4.09
1039 1041 1.686110 CACCTACTCCCCGGAAGCT 60.686 63.158 0.73 0.00 0.00 3.74
1040 1042 1.049289 ATCACCTACTCCCCGGAAGC 61.049 60.000 0.73 0.00 0.00 3.86
1041 1043 1.497161 AATCACCTACTCCCCGGAAG 58.503 55.000 0.73 1.91 0.00 3.46
1042 1044 1.557832 CAAATCACCTACTCCCCGGAA 59.442 52.381 0.73 0.00 0.00 4.30
1043 1045 1.200519 CAAATCACCTACTCCCCGGA 58.799 55.000 0.73 0.00 0.00 5.14
1044 1046 0.180406 CCAAATCACCTACTCCCCGG 59.820 60.000 0.00 0.00 0.00 5.73
1045 1047 0.463833 GCCAAATCACCTACTCCCCG 60.464 60.000 0.00 0.00 0.00 5.73
1046 1048 0.463833 CGCCAAATCACCTACTCCCC 60.464 60.000 0.00 0.00 0.00 4.81
1047 1049 1.095807 GCGCCAAATCACCTACTCCC 61.096 60.000 0.00 0.00 0.00 4.30
1048 1050 1.095807 GGCGCCAAATCACCTACTCC 61.096 60.000 24.80 0.00 0.00 3.85
1049 1051 1.095807 GGGCGCCAAATCACCTACTC 61.096 60.000 30.85 0.98 0.00 2.59
1050 1052 1.077716 GGGCGCCAAATCACCTACT 60.078 57.895 30.85 0.00 0.00 2.57
1051 1053 1.377987 TGGGCGCCAAATCACCTAC 60.378 57.895 30.85 6.94 0.00 3.18
1052 1054 1.377987 GTGGGCGCCAAATCACCTA 60.378 57.895 30.85 0.00 34.18 3.08
1053 1055 2.676471 GTGGGCGCCAAATCACCT 60.676 61.111 30.85 0.00 34.18 4.00
1509 1512 0.669625 GTACACAGACCCAAGCCGAC 60.670 60.000 0.00 0.00 0.00 4.79
1625 1628 2.202743 CTCGCCCGAAATCGCTGA 60.203 61.111 0.00 0.00 38.18 4.26
1626 1629 3.264897 CCTCGCCCGAAATCGCTG 61.265 66.667 0.00 0.00 38.18 5.18
1647 1651 5.164606 GTGTCCACTATTTCAAAACACGT 57.835 39.130 0.00 0.00 0.00 4.49
1666 1670 1.518572 CGCCCGAAATAGCTCGTGT 60.519 57.895 0.00 0.00 37.11 4.49
1700 1704 6.017440 CGAATAATTCATAAACCATGGTCGGT 60.017 38.462 20.07 9.39 42.71 4.69
1758 1762 3.227810 AGGTTCGTAACTTCATCCGAC 57.772 47.619 0.00 0.00 0.00 4.79
1760 1764 3.442100 GGTAGGTTCGTAACTTCATCCG 58.558 50.000 0.00 0.00 0.00 4.18
1795 1799 0.171007 GGACACACATCAATTGGCCG 59.829 55.000 5.42 0.00 0.00 6.13
1924 1928 2.289195 TGATTCGCGACTTGGTAAGGTT 60.289 45.455 9.15 0.00 0.00 3.50
2043 2050 6.548441 TTTTAGTGGGTCAACTATTTGTCG 57.452 37.500 0.00 0.00 32.78 4.35
2068 2075 3.501349 TCATTTTGGGTTTGATTCCGGA 58.499 40.909 0.00 0.00 0.00 5.14
2070 2077 6.035975 GCTATTTCATTTTGGGTTTGATTCCG 59.964 38.462 0.00 0.00 0.00 4.30
2094 2101 4.210120 ACGAGCTATTTCATTGAATCGAGC 59.790 41.667 20.28 17.52 33.43 5.03
2297 2304 7.026562 CCATGTTTCGACATAAACTTGCATTA 58.973 34.615 7.66 0.00 40.48 1.90
2311 2318 7.829378 AGACTAATCTAAACCATGTTTCGAC 57.171 36.000 0.00 0.00 31.46 4.20
2327 2334 6.139169 CGCGTTTTATGCATCAAAGACTAATC 59.861 38.462 0.19 0.00 0.00 1.75
2442 2495 0.539518 GGGCCAACAAGGTTTGTGTT 59.460 50.000 4.39 0.00 44.59 3.32
2477 2556 5.649395 ACACAAAGAGAGAGAGAGAGAGATG 59.351 44.000 0.00 0.00 0.00 2.90
2478 2557 5.649395 CACACAAAGAGAGAGAGAGAGAGAT 59.351 44.000 0.00 0.00 0.00 2.75
2651 2757 2.094659 CGATGGAGTGGTGCGTGAC 61.095 63.158 0.00 0.00 0.00 3.67
2665 2771 0.667993 GGGAGAGCTCTGAGACGATG 59.332 60.000 23.91 0.00 0.00 3.84
2753 2887 6.381250 AGAGAGATAGAGTTTTAGATGGGCT 58.619 40.000 0.00 0.00 0.00 5.19
2799 2935 1.341209 AGATTGTGCGTGTGTGAGAGA 59.659 47.619 0.00 0.00 0.00 3.10
2801 2941 1.068434 TGAGATTGTGCGTGTGTGAGA 59.932 47.619 0.00 0.00 0.00 3.27
2803 2945 1.799994 CATGAGATTGTGCGTGTGTGA 59.200 47.619 0.00 0.00 0.00 3.58
2811 2959 1.964552 AGCTAGGCATGAGATTGTGC 58.035 50.000 0.00 0.00 40.55 4.57
2875 3037 9.762381 ATTAGCTAGTCATATAGATATAGGGGC 57.238 37.037 0.00 0.00 0.00 5.80
3035 3219 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3036 3220 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3037 3221 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3038 3222 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3039 3223 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
3040 3224 0.958382 GGGTGTGTGTGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
3041 3225 0.676466 AGGGTGTGTGTGTGTGTGTG 60.676 55.000 0.00 0.00 0.00 3.82
3042 3226 0.392461 GAGGGTGTGTGTGTGTGTGT 60.392 55.000 0.00 0.00 0.00 3.72
3043 3227 0.107703 AGAGGGTGTGTGTGTGTGTG 60.108 55.000 0.00 0.00 0.00 3.82
3044 3228 0.618458 AAGAGGGTGTGTGTGTGTGT 59.382 50.000 0.00 0.00 0.00 3.72
3045 3229 1.016627 CAAGAGGGTGTGTGTGTGTG 58.983 55.000 0.00 0.00 0.00 3.82
3046 3230 0.748005 GCAAGAGGGTGTGTGTGTGT 60.748 55.000 0.00 0.00 0.00 3.72
3047 3231 1.447317 GGCAAGAGGGTGTGTGTGTG 61.447 60.000 0.00 0.00 0.00 3.82
3048 3232 1.152963 GGCAAGAGGGTGTGTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
3049 3233 1.898574 GGGCAAGAGGGTGTGTGTG 60.899 63.158 0.00 0.00 0.00 3.82
3050 3234 2.056906 GAGGGCAAGAGGGTGTGTGT 62.057 60.000 0.00 0.00 0.00 3.72
3051 3235 1.302832 GAGGGCAAGAGGGTGTGTG 60.303 63.158 0.00 0.00 0.00 3.82
3219 3412 1.139455 TCATGCATGCATCTCCGAGAA 59.861 47.619 30.07 0.00 33.90 2.87
3297 3512 7.484035 AAGAGTATGTGTGTGAAAGAGAAAC 57.516 36.000 0.00 0.00 0.00 2.78
3407 3629 6.436843 AACTTCGTGATGTTTGACTTTTCT 57.563 33.333 0.00 0.00 0.00 2.52
3425 3647 3.395639 TCCACGTACATGGTCAAACTTC 58.604 45.455 8.01 0.00 40.95 3.01
4148 4392 3.570550 GTGCGATAGAAGATACCCTGAGT 59.429 47.826 0.00 0.00 39.76 3.41
4152 4396 3.068307 GTGTGTGCGATAGAAGATACCCT 59.932 47.826 0.00 0.00 39.76 4.34
4240 4484 9.555411 AGATATAGAGAGGAGAGAGTGTATGTA 57.445 37.037 0.00 0.00 0.00 2.29
4258 4502 6.016527 ACGTACGGAGAAAATGCAGATATAGA 60.017 38.462 21.06 0.00 0.00 1.98
4260 4504 6.016527 AGACGTACGGAGAAAATGCAGATATA 60.017 38.462 21.06 0.00 0.00 0.86
4263 4507 3.119101 AGACGTACGGAGAAAATGCAGAT 60.119 43.478 21.06 0.00 0.00 2.90
4329 4573 1.127343 GAGAGCAAGACCCCTAGCAT 58.873 55.000 0.00 0.00 0.00 3.79
4366 4610 3.177228 AGCAAGGTGAGGAGATAGTGTT 58.823 45.455 0.00 0.00 0.00 3.32
4534 4792 5.282129 TGAGAGAGTCCCTAACTAGAGAGA 58.718 45.833 0.00 0.00 38.74 3.10
4535 4793 5.623956 TGAGAGAGTCCCTAACTAGAGAG 57.376 47.826 0.00 0.00 38.74 3.20
4597 4861 6.127730 CCACATATACCTGGTCAAACTTTTCC 60.128 42.308 0.63 0.00 0.00 3.13
4805 5076 5.555017 GTGAGAGATAGCAGAGAGAGAGAT 58.445 45.833 0.00 0.00 0.00 2.75
4842 5115 3.063180 CGTCGGTATAGAGTGTTCGAGTT 59.937 47.826 0.00 0.00 0.00 3.01
4935 5208 2.309528 AACACGAGCTGACAAGACAA 57.690 45.000 0.00 0.00 0.00 3.18
4938 5211 2.627945 ACAAAACACGAGCTGACAAGA 58.372 42.857 0.00 0.00 0.00 3.02
4955 5228 2.147958 GGCCAACACACGAAGATACAA 58.852 47.619 0.00 0.00 0.00 2.41
5016 5289 3.263261 TGTTTACTTCACTGCGTGTCAA 58.737 40.909 8.22 0.00 34.79 3.18
5078 5351 0.733150 GTCCTCAATGCGCCCTAAAC 59.267 55.000 4.18 0.00 0.00 2.01
5081 5354 1.220749 GTGTCCTCAATGCGCCCTA 59.779 57.895 4.18 0.00 0.00 3.53
5126 5399 1.424403 CGTAGTGGTGAATTGTGCGA 58.576 50.000 0.00 0.00 0.00 5.10
5267 5544 1.204941 GGGAGATATAGCCGCATCGTT 59.795 52.381 0.00 0.00 0.00 3.85
5468 5757 7.051623 GGGTTGTCTTCTTTTATTTTGGGTTT 58.948 34.615 0.00 0.00 0.00 3.27
5471 5760 5.071115 TGGGGTTGTCTTCTTTTATTTTGGG 59.929 40.000 0.00 0.00 0.00 4.12
5541 5837 5.007332 GGTCGTTGTTATGTGTCTTTTCTGT 59.993 40.000 0.00 0.00 0.00 3.41
5604 5902 1.134401 CCGATGATACCAGTGCAGGTT 60.134 52.381 2.55 0.00 43.08 3.50
5709 6011 4.831155 TCCACCTCATTACCTTATCCTACG 59.169 45.833 0.00 0.00 0.00 3.51
5739 6043 1.672363 CCATATTTGCTCAGCGCTTGA 59.328 47.619 7.50 8.38 40.11 3.02
5748 6054 5.334105 CGTATGTTAGCCACCATATTTGCTC 60.334 44.000 0.00 0.00 35.34 4.26
5808 6115 8.370940 TCACTTCTTGATCACTTCTAGTTTCAT 58.629 33.333 0.00 0.00 0.00 2.57
5872 6183 0.613777 GGAGTCCGGGAAGTGAACAT 59.386 55.000 0.00 0.00 0.00 2.71
5916 6227 1.160989 AAATGCATCAACCGCGTGTA 58.839 45.000 4.92 0.00 0.00 2.90
5939 6250 7.426410 TGTAGAGAACTTGACACTTGACTTAG 58.574 38.462 0.00 0.00 0.00 2.18
6185 6506 4.774726 AGATAGTGCGACTCATATTGGGAT 59.225 41.667 0.00 0.00 0.00 3.85
6190 6511 7.040132 TGAGAATGAGATAGTGCGACTCATATT 60.040 37.037 0.00 0.00 46.30 1.28
6194 6515 3.947834 TGAGAATGAGATAGTGCGACTCA 59.052 43.478 0.00 0.00 43.25 3.41
6305 6631 1.594310 GGACCAGTGCTCCTCTGAC 59.406 63.158 0.00 0.00 35.20 3.51
6353 6685 1.075601 TTCCCTTGGGTTCTGCAGAT 58.924 50.000 19.04 0.00 0.00 2.90
6385 6717 5.011586 GGTTTTACCATTTGCCTACCTACA 58.988 41.667 0.00 0.00 38.42 2.74
6488 6826 5.413213 CCGGTGTTATGTACCTTGATTTTGA 59.587 40.000 0.00 0.00 36.03 2.69
6500 6839 3.713858 CCGTCATACCGGTGTTATGTA 57.286 47.619 19.93 0.00 43.07 2.29
6527 6867 2.032681 GTTCCACTCTTGCCGCCT 59.967 61.111 0.00 0.00 0.00 5.52
6562 6903 0.838987 TAAAGGGTGGAAGGCTCGGT 60.839 55.000 0.00 0.00 0.00 4.69
6821 7213 6.370166 ACTTCTATCTTTGCTTGCTAGTTGTC 59.630 38.462 0.00 0.00 0.00 3.18
6870 7264 2.191400 CTTCCTTGTGGGATCTCAGGA 58.809 52.381 0.00 0.00 44.66 3.86
6882 7276 2.698797 TGGACTCGTTCTTCTTCCTTGT 59.301 45.455 0.00 0.00 0.00 3.16
6911 7305 2.661709 CGTTCGACTACGTCCGTTTGTA 60.662 50.000 0.00 0.00 40.69 2.41
6936 7331 2.681344 GTTTTGTTCCGGAGTTGTGAGT 59.319 45.455 3.34 0.00 0.00 3.41
6953 7357 4.570930 CTTCTCTCCTTAGCTTCGGTTTT 58.429 43.478 0.00 0.00 0.00 2.43
6967 7371 1.807142 CTTTTCGGGTTGCTTCTCTCC 59.193 52.381 0.00 0.00 0.00 3.71
6990 7394 4.748892 TGTGTGTTTACCATGTTGTTTGG 58.251 39.130 0.00 0.00 40.26 3.28
7023 7430 4.460034 TCATACTTGTTTGTGCATCATGCT 59.540 37.500 11.84 0.00 45.31 3.79
7251 7668 2.524306 TGATGTTTCCGGCCTCATTTT 58.476 42.857 0.00 0.00 0.00 1.82
7501 7938 6.057533 TCTTTTGCACCGATATCTCAATGAT 58.942 36.000 0.34 0.00 39.11 2.45
7528 7970 1.129251 CTAGCATGTTCCGCACACTTG 59.871 52.381 0.00 0.00 38.61 3.16
7529 7971 1.001974 TCTAGCATGTTCCGCACACTT 59.998 47.619 0.00 0.00 38.61 3.16
7530 7972 0.608130 TCTAGCATGTTCCGCACACT 59.392 50.000 0.00 0.00 38.61 3.55
7587 8044 1.927174 CAGTCGTTTCCTTATCGCCAG 59.073 52.381 0.00 0.00 0.00 4.85
7593 8050 4.374399 ACGTTTGTCAGTCGTTTCCTTAT 58.626 39.130 0.00 0.00 34.07 1.73
7605 8066 4.307432 AGATGTCCTTGTACGTTTGTCAG 58.693 43.478 0.00 0.00 0.00 3.51
7607 8068 3.364023 CGAGATGTCCTTGTACGTTTGTC 59.636 47.826 0.00 0.00 0.00 3.18
7608 8069 3.314553 CGAGATGTCCTTGTACGTTTGT 58.685 45.455 0.00 0.00 0.00 2.83
7609 8070 2.666508 CCGAGATGTCCTTGTACGTTTG 59.333 50.000 0.00 0.00 0.00 2.93
7610 8071 2.559668 TCCGAGATGTCCTTGTACGTTT 59.440 45.455 0.00 0.00 0.00 3.60
7766 8273 5.862924 ACTTTCACTATGAACGTGAATGG 57.137 39.130 17.35 11.44 46.95 3.16
7813 8370 2.912956 AGGGCTTGGAGTCATCAAGTAA 59.087 45.455 9.88 0.00 42.44 2.24
7836 8393 0.318360 CACGACTACTGTTGACCGCA 60.318 55.000 0.00 0.00 0.00 5.69
7846 8403 1.177256 AAGACCCGTGCACGACTACT 61.177 55.000 39.10 26.30 43.02 2.57
7937 8494 2.413765 CGACTACCTTCGTGTGTACCAG 60.414 54.545 0.00 0.00 34.16 4.00
7989 8549 4.640201 CCGATGGATTTTGACAAGTACCAT 59.360 41.667 16.41 16.41 39.00 3.55
8001 8561 6.411376 TGTACAACTACATCCGATGGATTTT 58.589 36.000 13.00 0.00 39.79 1.82
8045 8607 2.030540 CCGTCAAGTACTCTTTGGACGA 60.031 50.000 23.50 1.78 44.93 4.20
8055 8617 2.352421 CGATGTGGAACCGTCAAGTACT 60.352 50.000 0.00 0.00 34.36 2.73
8127 8689 3.368248 CATCCAAATCAGGGAACACCAT 58.632 45.455 0.00 0.00 43.89 3.55
8147 8709 4.069304 CCCTTTTATCGTTGTCAAGACCA 58.931 43.478 0.00 0.00 0.00 4.02
8173 8735 3.977244 CCTTTGTGCACCACCGCC 61.977 66.667 15.69 0.00 32.73 6.13
8502 9066 2.041819 CCCCTCCGTTAGCTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
8525 9089 3.780173 GCTCTCTGCGGCCTCCTT 61.780 66.667 0.00 0.00 0.00 3.36
8675 9256 1.611851 AGGAGCACCAGGAGGAGTG 60.612 63.158 2.07 0.00 38.69 3.51
8697 9278 4.070552 GCCGCCAACTCTCCTCGT 62.071 66.667 0.00 0.00 0.00 4.18
8769 9351 0.399454 CATTGCGATCCCCTCATCCT 59.601 55.000 0.00 0.00 0.00 3.24
8784 9366 3.136123 CCCGCAGCCACTCCATTG 61.136 66.667 0.00 0.00 0.00 2.82
8805 9387 1.338105 GCCAGAGACACACACATAGCA 60.338 52.381 0.00 0.00 0.00 3.49
8807 9389 1.633561 CGCCAGAGACACACACATAG 58.366 55.000 0.00 0.00 0.00 2.23
8809 9391 1.004560 CCGCCAGAGACACACACAT 60.005 57.895 0.00 0.00 0.00 3.21
8841 9425 1.759201 CGATCCCCATCTCTCCCTTCA 60.759 57.143 0.00 0.00 0.00 3.02
8920 9504 0.120377 ACCCTAACCCTCATCACCCA 59.880 55.000 0.00 0.00 0.00 4.51
8924 9508 3.788116 TCCTAACCCTAACCCTCATCA 57.212 47.619 0.00 0.00 0.00 3.07
8929 9513 1.980230 GCCCATCCTAACCCTAACCCT 60.980 57.143 0.00 0.00 0.00 4.34
8951 9535 1.598701 GGCACTTGGACCATCCTTGC 61.599 60.000 0.00 1.75 37.46 4.01
8953 9537 0.706433 ATGGCACTTGGACCATCCTT 59.294 50.000 0.00 0.00 43.26 3.36
9004 9588 1.688884 GGAGAGAGAAGCCCAGCCT 60.689 63.158 0.00 0.00 0.00 4.58
9055 9640 8.986477 TTTTCTTGTCCTTTTCTTCTTCTTTG 57.014 30.769 0.00 0.00 0.00 2.77
9071 9656 8.608844 TTCTTGTCCTATCTCTTTTTCTTGTC 57.391 34.615 0.00 0.00 0.00 3.18
9145 9763 4.079253 GTGCCCACTTCTATTTTTCCTGA 58.921 43.478 0.00 0.00 0.00 3.86
9221 9839 2.349886 GCACTTCTAAATCGCAGTCCTG 59.650 50.000 0.00 0.00 0.00 3.86
9229 9847 5.469479 ACATTTTTGGGCACTTCTAAATCG 58.531 37.500 0.00 0.00 0.00 3.34
9259 9878 2.649816 ACTTTCCCAAGCTCCACCTAAT 59.350 45.455 0.00 0.00 32.57 1.73
9332 9954 4.924462 CACACTTGCAAATAATCACATGCA 59.076 37.500 0.00 0.00 46.21 3.96
9361 9984 3.900388 CGTTAATTTTCGGAACCACCA 57.100 42.857 0.00 0.00 38.90 4.17
9430 10054 4.082125 GAGGGAATTCACATGGTGAGTTT 58.918 43.478 11.02 3.26 43.69 2.66
9522 10162 3.004862 GGCATCGCATCATGTCATCATA 58.995 45.455 0.00 0.00 32.47 2.15
9543 10183 4.053469 TGCATTCATCTTTGCATCATGG 57.947 40.909 0.00 0.00 43.54 3.66
9577 10217 2.282407 TCCGAGATTCGTCGTGTGATA 58.718 47.619 0.00 0.00 38.40 2.15
9599 10239 2.555757 GGCTCCATATGTCTTTCATGGC 59.444 50.000 1.24 0.00 39.30 4.40
9605 10245 3.525199 AGACTTGGGCTCCATATGTCTTT 59.475 43.478 1.24 2.02 36.41 2.52
9609 10249 3.287867 CAAGACTTGGGCTCCATATGT 57.712 47.619 7.35 0.00 31.53 2.29
9622 10262 0.981183 TATGTGACGCCCCAAGACTT 59.019 50.000 0.00 0.00 0.00 3.01
9623 10263 0.981183 TTATGTGACGCCCCAAGACT 59.019 50.000 0.00 0.00 0.00 3.24
9640 10280 2.754254 TCGAGCCGCCTCTGCTTA 60.754 61.111 0.00 0.00 39.69 3.09
9641 10281 4.140599 CTCGAGCCGCCTCTGCTT 62.141 66.667 0.00 0.00 39.69 3.91
9652 10292 2.583685 GATGCGGTTTTGGCTCGAGC 62.584 60.000 29.38 29.38 41.14 5.03
9653 10293 1.425428 GATGCGGTTTTGGCTCGAG 59.575 57.895 8.45 8.45 0.00 4.04
9654 10294 2.038269 GGATGCGGTTTTGGCTCGA 61.038 57.895 0.00 0.00 0.00 4.04
9655 10295 2.485122 GGATGCGGTTTTGGCTCG 59.515 61.111 0.00 0.00 0.00 5.03
9656 10296 2.485122 CGGATGCGGTTTTGGCTC 59.515 61.111 0.00 0.00 0.00 4.70
9657 10297 3.061848 CCGGATGCGGTTTTGGCT 61.062 61.111 18.74 0.00 0.00 4.75
9658 10298 4.794439 GCCGGATGCGGTTTTGGC 62.794 66.667 27.20 7.55 35.04 4.52
9668 10308 4.899239 GTCCAGGCTCGCCGGATG 62.899 72.222 19.23 0.00 39.55 3.51
9671 10311 4.821589 GAAGTCCAGGCTCGCCGG 62.822 72.222 0.00 0.00 41.95 6.13
9672 10312 3.376935 ATGAAGTCCAGGCTCGCCG 62.377 63.158 1.69 0.00 41.95 6.46
9673 10313 1.522580 GATGAAGTCCAGGCTCGCC 60.523 63.158 0.00 0.00 0.00 5.54
9674 10314 0.809241 CTGATGAAGTCCAGGCTCGC 60.809 60.000 0.00 0.00 0.00 5.03
9675 10315 0.809241 GCTGATGAAGTCCAGGCTCG 60.809 60.000 0.00 0.00 0.00 5.03
9676 10316 0.251354 TGCTGATGAAGTCCAGGCTC 59.749 55.000 0.00 0.00 0.00 4.70
9677 10317 0.252479 CTGCTGATGAAGTCCAGGCT 59.748 55.000 0.00 0.00 0.00 4.58
9678 10318 1.375098 GCTGCTGATGAAGTCCAGGC 61.375 60.000 0.00 0.00 0.00 4.85
9679 10319 0.747283 GGCTGCTGATGAAGTCCAGG 60.747 60.000 0.00 0.00 0.00 4.45
9680 10320 0.252479 AGGCTGCTGATGAAGTCCAG 59.748 55.000 0.00 0.00 0.00 3.86
9681 10321 0.251354 GAGGCTGCTGATGAAGTCCA 59.749 55.000 0.00 0.00 0.00 4.02
9682 10322 0.463474 GGAGGCTGCTGATGAAGTCC 60.463 60.000 0.00 0.00 0.00 3.85
9683 10323 0.463474 GGGAGGCTGCTGATGAAGTC 60.463 60.000 5.84 0.00 0.00 3.01
9684 10324 1.606531 GGGAGGCTGCTGATGAAGT 59.393 57.895 5.84 0.00 0.00 3.01
9685 10325 1.153005 GGGGAGGCTGCTGATGAAG 60.153 63.158 5.84 0.00 0.00 3.02
9686 10326 3.001514 GGGGAGGCTGCTGATGAA 58.998 61.111 5.84 0.00 0.00 2.57
9687 10327 3.473647 CGGGGAGGCTGCTGATGA 61.474 66.667 5.84 0.00 0.00 2.92
9688 10328 2.815945 ATCGGGGAGGCTGCTGATG 61.816 63.158 5.84 0.00 0.00 3.07
9689 10329 2.447379 ATCGGGGAGGCTGCTGAT 60.447 61.111 5.84 7.20 0.00 2.90
9690 10330 3.473647 CATCGGGGAGGCTGCTGA 61.474 66.667 5.84 4.94 0.00 4.26
9691 10331 3.473647 TCATCGGGGAGGCTGCTG 61.474 66.667 5.84 0.00 0.00 4.41
9692 10332 3.474570 GTCATCGGGGAGGCTGCT 61.475 66.667 5.84 0.00 0.00 4.24
9693 10333 3.112205 ATGTCATCGGGGAGGCTGC 62.112 63.158 0.00 0.00 0.00 5.25
9694 10334 1.227764 CATGTCATCGGGGAGGCTG 60.228 63.158 0.00 0.00 0.00 4.85
9695 10335 3.112205 GCATGTCATCGGGGAGGCT 62.112 63.158 0.00 0.00 0.00 4.58
9696 10336 2.592861 GCATGTCATCGGGGAGGC 60.593 66.667 0.00 0.00 0.00 4.70
9697 10337 1.227764 CAGCATGTCATCGGGGAGG 60.228 63.158 0.00 0.00 0.00 4.30
9698 10338 1.890979 GCAGCATGTCATCGGGGAG 60.891 63.158 0.00 0.00 39.31 4.30
9699 10339 2.190313 GCAGCATGTCATCGGGGA 59.810 61.111 0.00 0.00 39.31 4.81
9700 10340 1.890979 GAGCAGCATGTCATCGGGG 60.891 63.158 0.00 0.00 39.31 5.73
9701 10341 0.534427 ATGAGCAGCATGTCATCGGG 60.534 55.000 0.00 0.00 39.31 5.14
9702 10342 0.866427 GATGAGCAGCATGTCATCGG 59.134 55.000 7.23 0.00 40.76 4.18
9703 10343 1.578583 TGATGAGCAGCATGTCATCG 58.421 50.000 15.02 0.00 46.75 3.84
9704 10344 3.139077 TGATGATGAGCAGCATGTCATC 58.861 45.455 19.29 19.29 45.42 2.92
9705 10345 3.208747 TGATGATGAGCAGCATGTCAT 57.791 42.857 5.89 0.34 38.12 3.06
9706 10346 2.702592 TGATGATGAGCAGCATGTCA 57.297 45.000 5.89 0.00 38.12 3.58
9712 10352 1.575576 GGCCGATGATGATGAGCAGC 61.576 60.000 0.00 0.00 0.00 5.25
9713 10353 0.035036 AGGCCGATGATGATGAGCAG 59.965 55.000 0.00 0.00 0.00 4.24
9714 10354 0.034476 GAGGCCGATGATGATGAGCA 59.966 55.000 0.00 0.00 0.00 4.26
9715 10355 0.673022 GGAGGCCGATGATGATGAGC 60.673 60.000 0.00 0.00 0.00 4.26
9716 10356 0.975135 AGGAGGCCGATGATGATGAG 59.025 55.000 0.00 0.00 0.00 2.90
9717 10357 0.972134 GAGGAGGCCGATGATGATGA 59.028 55.000 0.00 0.00 0.00 2.92
9718 10358 0.036577 GGAGGAGGCCGATGATGATG 60.037 60.000 0.00 0.00 0.00 3.07
9719 10359 1.197430 GGGAGGAGGCCGATGATGAT 61.197 60.000 0.00 0.00 0.00 2.45
9720 10360 1.838846 GGGAGGAGGCCGATGATGA 60.839 63.158 0.00 0.00 0.00 2.92
9721 10361 2.746359 GGGAGGAGGCCGATGATG 59.254 66.667 0.00 0.00 0.00 3.07
9722 10362 2.527875 GGGGAGGAGGCCGATGAT 60.528 66.667 0.00 0.00 0.00 2.45
9723 10363 4.088351 TGGGGAGGAGGCCGATGA 62.088 66.667 0.00 0.00 0.00 2.92
9724 10364 3.866582 GTGGGGAGGAGGCCGATG 61.867 72.222 0.00 0.00 0.00 3.84
9728 10368 2.573893 GATTTGGTGGGGAGGAGGCC 62.574 65.000 0.00 0.00 0.00 5.19
9729 10369 1.076705 GATTTGGTGGGGAGGAGGC 60.077 63.158 0.00 0.00 0.00 4.70
9730 10370 0.257039 CAGATTTGGTGGGGAGGAGG 59.743 60.000 0.00 0.00 0.00 4.30
9731 10371 0.394899 GCAGATTTGGTGGGGAGGAG 60.395 60.000 0.00 0.00 0.00 3.69
9732 10372 1.691219 GCAGATTTGGTGGGGAGGA 59.309 57.895 0.00 0.00 0.00 3.71
9733 10373 1.380380 GGCAGATTTGGTGGGGAGG 60.380 63.158 0.00 0.00 0.00 4.30
9734 10374 0.032813 ATGGCAGATTTGGTGGGGAG 60.033 55.000 0.00 0.00 0.00 4.30
9735 10375 0.324552 CATGGCAGATTTGGTGGGGA 60.325 55.000 0.00 0.00 0.00 4.81
9736 10376 1.963464 GCATGGCAGATTTGGTGGGG 61.963 60.000 0.00 0.00 0.00 4.96
9737 10377 1.518774 GCATGGCAGATTTGGTGGG 59.481 57.895 0.00 0.00 0.00 4.61
9738 10378 1.140161 CGCATGGCAGATTTGGTGG 59.860 57.895 0.00 0.00 0.00 4.61
9739 10379 1.140161 CCGCATGGCAGATTTGGTG 59.860 57.895 0.00 0.00 0.00 4.17
9740 10380 1.001020 TCCGCATGGCAGATTTGGT 60.001 52.632 0.00 0.00 34.14 3.67
9741 10381 1.731700 CTCCGCATGGCAGATTTGG 59.268 57.895 0.00 0.00 34.14 3.28
9742 10382 1.065273 GCTCCGCATGGCAGATTTG 59.935 57.895 0.00 0.00 34.14 2.32
9743 10383 2.475466 CGCTCCGCATGGCAGATTT 61.475 57.895 0.00 0.00 34.14 2.17
9744 10384 2.898840 CGCTCCGCATGGCAGATT 60.899 61.111 0.00 0.00 34.14 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.