Multiple sequence alignment - TraesCS4A01G262400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G262400 chr4A 100.000 2539 0 0 1 2539 574767490 574764952 0.000000e+00 4689
1 TraesCS4A01G262400 chr4A 91.703 2302 105 19 1 2275 602465154 602462912 0.000000e+00 3114
2 TraesCS4A01G262400 chr4A 94.340 265 14 1 2276 2539 86215257 86215521 3.040000e-109 405
3 TraesCS4A01G262400 chr4A 95.257 253 11 1 2288 2539 432097778 432097526 1.420000e-107 399
4 TraesCS4A01G262400 chr4A 93.585 265 11 4 2276 2539 422932982 422933241 8.520000e-105 390
5 TraesCS4A01G262400 chr3A 97.411 2279 47 8 1 2275 224968261 224970531 0.000000e+00 3871
6 TraesCS4A01G262400 chr3A 93.962 265 15 1 2276 2539 209776649 209776913 1.420000e-107 399
7 TraesCS4A01G262400 chr6A 97.060 2279 62 3 1 2275 394642542 394644819 0.000000e+00 3832
8 TraesCS4A01G262400 chr2B 91.272 2303 153 18 1 2275 622030766 622028484 0.000000e+00 3096
9 TraesCS4A01G262400 chr2B 91.410 2305 111 21 1 2275 435353320 435351073 0.000000e+00 3079
10 TraesCS4A01G262400 chr2B 88.851 888 66 13 1410 2275 760346597 760345721 0.000000e+00 1061
11 TraesCS4A01G262400 chr6B 91.493 2304 110 16 1 2275 617028567 617030813 0.000000e+00 3090
12 TraesCS4A01G262400 chr6B 90.806 2295 118 17 3 2275 399208515 399206292 0.000000e+00 2983
13 TraesCS4A01G262400 chr6B 89.450 891 57 14 1410 2275 101192030 101192908 0.000000e+00 1090
14 TraesCS4A01G262400 chr6B 89.350 892 60 15 1410 2278 423139267 423138388 0.000000e+00 1088
15 TraesCS4A01G262400 chr5A 91.272 2303 116 21 1 2276 692979205 692981449 0.000000e+00 3061
16 TraesCS4A01G262400 chr5A 90.525 2058 109 15 248 2276 693957649 693959649 0.000000e+00 2641
17 TraesCS4A01G262400 chr5A 93.122 945 47 4 1348 2275 516607171 516608114 0.000000e+00 1369
18 TraesCS4A01G262400 chr5A 94.275 262 14 1 2279 2539 126827601 126827862 1.420000e-107 399
19 TraesCS4A01G262400 chr5A 93.208 265 16 2 2276 2539 526864829 526865092 3.060000e-104 388
20 TraesCS4A01G262400 chr1B 90.644 2298 122 24 1 2275 651732018 651729791 0.000000e+00 2966
21 TraesCS4A01G262400 chr1B 90.909 2068 100 18 1 2038 17134744 17136753 0.000000e+00 2697
22 TraesCS4A01G262400 chr1B 89.933 1947 108 21 358 2275 41212305 41214192 0.000000e+00 2429
23 TraesCS4A01G262400 chr1B 89.836 1948 109 23 358 2275 41174293 41176181 0.000000e+00 2418
24 TraesCS4A01G262400 chr1B 88.835 824 37 8 1476 2275 672837445 672836653 0.000000e+00 961
25 TraesCS4A01G262400 chr4B 88.571 735 53 11 1562 2275 11347197 11346473 0.000000e+00 863
26 TraesCS4A01G262400 chr4B 88.365 636 41 13 1410 2024 21166283 21166906 0.000000e+00 734
27 TraesCS4A01G262400 chr1A 95.094 265 12 1 2276 2539 293459687 293459423 1.410000e-112 416
28 TraesCS4A01G262400 chr1A 93.585 265 16 1 2276 2539 326733789 326733525 6.580000e-106 394
29 TraesCS4A01G262400 chr2A 93.585 265 16 1 2276 2539 86472328 86472592 6.580000e-106 394


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G262400 chr4A 574764952 574767490 2538 True 4689 4689 100.000 1 2539 1 chr4A.!!$R2 2538
1 TraesCS4A01G262400 chr4A 602462912 602465154 2242 True 3114 3114 91.703 1 2275 1 chr4A.!!$R3 2274
2 TraesCS4A01G262400 chr3A 224968261 224970531 2270 False 3871 3871 97.411 1 2275 1 chr3A.!!$F2 2274
3 TraesCS4A01G262400 chr6A 394642542 394644819 2277 False 3832 3832 97.060 1 2275 1 chr6A.!!$F1 2274
4 TraesCS4A01G262400 chr2B 622028484 622030766 2282 True 3096 3096 91.272 1 2275 1 chr2B.!!$R2 2274
5 TraesCS4A01G262400 chr2B 435351073 435353320 2247 True 3079 3079 91.410 1 2275 1 chr2B.!!$R1 2274
6 TraesCS4A01G262400 chr2B 760345721 760346597 876 True 1061 1061 88.851 1410 2275 1 chr2B.!!$R3 865
7 TraesCS4A01G262400 chr6B 617028567 617030813 2246 False 3090 3090 91.493 1 2275 1 chr6B.!!$F2 2274
8 TraesCS4A01G262400 chr6B 399206292 399208515 2223 True 2983 2983 90.806 3 2275 1 chr6B.!!$R1 2272
9 TraesCS4A01G262400 chr6B 101192030 101192908 878 False 1090 1090 89.450 1410 2275 1 chr6B.!!$F1 865
10 TraesCS4A01G262400 chr6B 423138388 423139267 879 True 1088 1088 89.350 1410 2278 1 chr6B.!!$R2 868
11 TraesCS4A01G262400 chr5A 692979205 692981449 2244 False 3061 3061 91.272 1 2276 1 chr5A.!!$F4 2275
12 TraesCS4A01G262400 chr5A 693957649 693959649 2000 False 2641 2641 90.525 248 2276 1 chr5A.!!$F5 2028
13 TraesCS4A01G262400 chr5A 516607171 516608114 943 False 1369 1369 93.122 1348 2275 1 chr5A.!!$F2 927
14 TraesCS4A01G262400 chr1B 651729791 651732018 2227 True 2966 2966 90.644 1 2275 1 chr1B.!!$R1 2274
15 TraesCS4A01G262400 chr1B 17134744 17136753 2009 False 2697 2697 90.909 1 2038 1 chr1B.!!$F1 2037
16 TraesCS4A01G262400 chr1B 41212305 41214192 1887 False 2429 2429 89.933 358 2275 1 chr1B.!!$F3 1917
17 TraesCS4A01G262400 chr1B 41174293 41176181 1888 False 2418 2418 89.836 358 2275 1 chr1B.!!$F2 1917
18 TraesCS4A01G262400 chr1B 672836653 672837445 792 True 961 961 88.835 1476 2275 1 chr1B.!!$R2 799
19 TraesCS4A01G262400 chr4B 11346473 11347197 724 True 863 863 88.571 1562 2275 1 chr4B.!!$R1 713
20 TraesCS4A01G262400 chr4B 21166283 21166906 623 False 734 734 88.365 1410 2024 1 chr4B.!!$F1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
776 785 3.441572 GTGCCATGCTTCTTTCATGTAGT 59.558 43.478 0.0 0.0 39.6 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 2474 0.031449 GAGGGCGAGATTCTTCTCCG 59.969 60.0 0.0 0.0 44.76 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 225 5.123979 GGCTTGTTTACCTCATCCTTGTTAG 59.876 44.000 0.00 0.00 0.00 2.34
441 442 5.463061 GGTACTGCTTTGTCGTTTAACACTA 59.537 40.000 0.00 0.00 0.00 2.74
548 549 9.553064 GTGGAGAAACTCTGTCATTTCATATAT 57.447 33.333 0.00 0.00 37.30 0.86
681 690 6.495181 TCCATGTTCCCATTTAAGCTAAACAA 59.505 34.615 0.00 0.00 0.00 2.83
696 705 5.359860 AGCTAAACAAAGGTGCACTTAGTTT 59.640 36.000 25.09 25.09 38.85 2.66
776 785 3.441572 GTGCCATGCTTCTTTCATGTAGT 59.558 43.478 0.00 0.00 39.60 2.73
1083 1098 6.627087 ATTCTCACTAAAGAATGTCCCTCA 57.373 37.500 0.00 0.00 42.88 3.86
1085 1100 6.433847 TCTCACTAAAGAATGTCCCTCAAA 57.566 37.500 0.00 0.00 0.00 2.69
1284 1302 2.582226 CGCGCCGCAGAGTATCAA 60.582 61.111 10.75 0.00 37.82 2.57
1317 1335 3.499737 GTTGAGGCCACCGATGCG 61.500 66.667 5.01 0.00 0.00 4.73
1505 1546 1.272425 CCAGGGATTGGCTGTGGTTTA 60.272 52.381 0.00 0.00 40.87 2.01
1641 1689 7.406916 TGTTGGGCCTAAGTTAATGAAATCTA 58.593 34.615 0.00 0.00 0.00 1.98
2044 2160 2.719739 CTGGTTCAGCCACATCAGATT 58.280 47.619 0.00 0.00 43.61 2.40
2136 2252 0.036483 GGCGGCCATGACCAAAATTT 60.036 50.000 15.62 0.00 0.00 1.82
2243 2364 4.468643 TGACGAATTAACGACCAAAATGC 58.531 39.130 0.00 0.00 37.03 3.56
2276 2397 2.093869 TGACCGTATTTCCTGTAGTGGC 60.094 50.000 0.00 0.00 0.00 5.01
2277 2398 1.134907 ACCGTATTTCCTGTAGTGGCG 60.135 52.381 0.00 0.00 0.00 5.69
2278 2399 1.134907 CCGTATTTCCTGTAGTGGCGT 60.135 52.381 0.00 0.00 0.00 5.68
2279 2400 2.190981 CGTATTTCCTGTAGTGGCGTC 58.809 52.381 0.00 0.00 0.00 5.19
2280 2401 2.547826 GTATTTCCTGTAGTGGCGTCC 58.452 52.381 0.00 0.00 0.00 4.79
2281 2402 0.108329 ATTTCCTGTAGTGGCGTCCG 60.108 55.000 0.00 0.00 0.00 4.79
2282 2403 1.180456 TTTCCTGTAGTGGCGTCCGA 61.180 55.000 0.00 0.00 0.00 4.55
2283 2404 1.870055 TTCCTGTAGTGGCGTCCGAC 61.870 60.000 0.00 0.00 0.00 4.79
2284 2405 2.632544 CCTGTAGTGGCGTCCGACA 61.633 63.158 0.00 0.00 0.00 4.35
2290 2411 3.621805 TGGCGTCCGACACACCAT 61.622 61.111 0.00 0.00 31.78 3.55
2291 2412 3.118454 GGCGTCCGACACACCATG 61.118 66.667 0.00 0.00 0.00 3.66
2292 2413 3.118454 GCGTCCGACACACCATGG 61.118 66.667 11.19 11.19 0.00 3.66
2293 2414 3.118454 CGTCCGACACACCATGGC 61.118 66.667 13.04 0.00 0.00 4.40
2298 2419 3.876300 GACACACCATGGCGACTC 58.124 61.111 13.04 0.00 0.00 3.36
2299 2420 2.048222 ACACACCATGGCGACTCG 60.048 61.111 13.04 0.00 0.00 4.18
2311 2432 2.435059 GACTCGCAAGTCCCTGGC 60.435 66.667 0.00 0.00 45.26 4.85
2312 2433 2.925170 ACTCGCAAGTCCCTGGCT 60.925 61.111 0.00 0.00 39.48 4.75
2313 2434 2.435586 CTCGCAAGTCCCTGGCTG 60.436 66.667 0.00 0.00 39.48 4.85
2314 2435 2.922503 TCGCAAGTCCCTGGCTGA 60.923 61.111 0.00 0.00 39.48 4.26
2315 2436 2.249413 CTCGCAAGTCCCTGGCTGAT 62.249 60.000 0.00 0.00 39.48 2.90
2316 2437 2.110967 CGCAAGTCCCTGGCTGATG 61.111 63.158 0.00 0.00 0.00 3.07
2317 2438 2.413142 GCAAGTCCCTGGCTGATGC 61.413 63.158 0.00 0.00 38.76 3.91
2318 2439 1.302285 CAAGTCCCTGGCTGATGCT 59.698 57.895 0.00 0.00 39.59 3.79
2319 2440 0.323178 CAAGTCCCTGGCTGATGCTT 60.323 55.000 0.00 0.00 39.59 3.91
2320 2441 0.323178 AAGTCCCTGGCTGATGCTTG 60.323 55.000 0.00 0.00 39.59 4.01
2321 2442 1.751927 GTCCCTGGCTGATGCTTGG 60.752 63.158 0.00 0.00 39.59 3.61
2322 2443 2.233566 TCCCTGGCTGATGCTTGGT 61.234 57.895 0.00 0.00 39.59 3.67
2323 2444 0.913934 TCCCTGGCTGATGCTTGGTA 60.914 55.000 0.00 0.00 39.59 3.25
2324 2445 0.749454 CCCTGGCTGATGCTTGGTAC 60.749 60.000 0.00 0.00 39.59 3.34
2325 2446 0.254178 CCTGGCTGATGCTTGGTACT 59.746 55.000 0.00 0.00 39.59 2.73
2326 2447 1.661341 CTGGCTGATGCTTGGTACTC 58.339 55.000 0.00 0.00 39.59 2.59
2327 2448 0.108186 TGGCTGATGCTTGGTACTCG 60.108 55.000 0.00 0.00 39.59 4.18
2328 2449 1.432270 GGCTGATGCTTGGTACTCGC 61.432 60.000 0.00 0.00 39.59 5.03
2329 2450 1.432270 GCTGATGCTTGGTACTCGCC 61.432 60.000 0.00 0.00 36.03 5.54
2330 2451 1.148157 CTGATGCTTGGTACTCGCCG 61.148 60.000 0.00 0.00 0.00 6.46
2331 2452 1.883084 GATGCTTGGTACTCGCCGG 60.883 63.158 0.00 0.00 0.00 6.13
2332 2453 4.752879 TGCTTGGTACTCGCCGGC 62.753 66.667 19.07 19.07 0.00 6.13
2334 2455 4.832608 CTTGGTACTCGCCGGCCC 62.833 72.222 23.46 16.72 0.00 5.80
2339 2460 4.853142 TACTCGCCGGCCCTGGAT 62.853 66.667 23.46 2.96 0.00 3.41
2341 2462 4.918201 CTCGCCGGCCCTGGATTC 62.918 72.222 23.46 0.00 0.00 2.52
2346 2467 3.738481 CGGCCCTGGATTCCCCAA 61.738 66.667 0.00 0.00 46.07 4.12
2347 2468 2.777146 GGCCCTGGATTCCCCAAA 59.223 61.111 0.00 0.00 46.07 3.28
2348 2469 1.314518 GGCCCTGGATTCCCCAAAT 59.685 57.895 0.00 0.00 46.07 2.32
2349 2470 0.326522 GGCCCTGGATTCCCCAAATT 60.327 55.000 0.00 0.00 46.07 1.82
2350 2471 1.583556 GCCCTGGATTCCCCAAATTT 58.416 50.000 0.00 0.00 46.07 1.82
2351 2472 1.210234 GCCCTGGATTCCCCAAATTTG 59.790 52.381 11.40 11.40 46.07 2.32
2352 2473 2.550175 CCCTGGATTCCCCAAATTTGT 58.450 47.619 16.73 0.00 46.07 2.83
2353 2474 2.501316 CCCTGGATTCCCCAAATTTGTC 59.499 50.000 16.73 7.23 46.07 3.18
2354 2475 2.166254 CCTGGATTCCCCAAATTTGTCG 59.834 50.000 16.73 6.44 46.07 4.35
2355 2476 2.166254 CTGGATTCCCCAAATTTGTCGG 59.834 50.000 16.73 14.70 46.07 4.79
2356 2477 2.225142 TGGATTCCCCAAATTTGTCGGA 60.225 45.455 16.73 16.58 43.29 4.55
2357 2478 2.427095 GGATTCCCCAAATTTGTCGGAG 59.573 50.000 16.73 6.54 34.14 4.63
2358 2479 2.961531 TTCCCCAAATTTGTCGGAGA 57.038 45.000 16.73 8.44 0.00 3.71
2359 2480 2.961531 TCCCCAAATTTGTCGGAGAA 57.038 45.000 16.73 0.00 39.69 2.87
2360 2481 2.790433 TCCCCAAATTTGTCGGAGAAG 58.210 47.619 16.73 0.00 39.69 2.85
2361 2482 2.373836 TCCCCAAATTTGTCGGAGAAGA 59.626 45.455 16.73 2.57 39.69 2.87
2362 2483 3.153919 CCCCAAATTTGTCGGAGAAGAA 58.846 45.455 16.73 0.00 39.69 2.52
2363 2484 3.763897 CCCCAAATTTGTCGGAGAAGAAT 59.236 43.478 16.73 0.00 39.69 2.40
2364 2485 4.142381 CCCCAAATTTGTCGGAGAAGAATC 60.142 45.833 16.73 0.00 39.69 2.52
2365 2486 4.702131 CCCAAATTTGTCGGAGAAGAATCT 59.298 41.667 16.73 0.00 39.69 2.40
2373 2494 3.560826 GAGAAGAATCTCGCCCTCG 57.439 57.895 0.00 0.00 42.54 4.63
2374 2495 0.596341 GAGAAGAATCTCGCCCTCGC 60.596 60.000 0.00 0.00 42.54 5.03
2395 2516 4.758251 CCTGATGACGGTGGCGCA 62.758 66.667 10.83 0.00 0.00 6.09
2396 2517 3.190849 CTGATGACGGTGGCGCAG 61.191 66.667 10.83 0.00 0.00 5.18
2397 2518 4.758251 TGATGACGGTGGCGCAGG 62.758 66.667 10.83 0.00 0.00 4.85
2420 2541 4.459089 GAGGGGGCGACTGTGCTC 62.459 72.222 0.00 0.00 34.52 4.26
2422 2543 4.329545 GGGGGCGACTGTGCTCAA 62.330 66.667 0.00 0.00 36.95 3.02
2423 2544 2.743928 GGGGCGACTGTGCTCAAG 60.744 66.667 0.00 0.00 36.95 3.02
2424 2545 2.743928 GGGCGACTGTGCTCAAGG 60.744 66.667 0.00 0.00 34.69 3.61
2425 2546 2.031163 GGCGACTGTGCTCAAGGT 59.969 61.111 0.00 0.00 34.52 3.50
2426 2547 2.029844 GGCGACTGTGCTCAAGGTC 61.030 63.158 0.00 0.00 34.52 3.85
2427 2548 3.848142 CGACTGTGCTCAAGGTCG 58.152 61.111 13.72 13.72 43.74 4.79
2428 2549 1.734477 CGACTGTGCTCAAGGTCGG 60.734 63.158 17.77 4.90 44.92 4.79
2429 2550 2.029844 GACTGTGCTCAAGGTCGGC 61.030 63.158 0.00 0.00 0.00 5.54
2430 2551 2.345244 CTGTGCTCAAGGTCGGCT 59.655 61.111 0.00 0.00 0.00 5.52
2431 2552 1.739562 CTGTGCTCAAGGTCGGCTC 60.740 63.158 0.00 0.00 0.00 4.70
2432 2553 2.435059 GTGCTCAAGGTCGGCTCC 60.435 66.667 0.00 0.00 0.00 4.70
2433 2554 4.069232 TGCTCAAGGTCGGCTCCG 62.069 66.667 1.14 1.14 41.35 4.63
2434 2555 3.760035 GCTCAAGGTCGGCTCCGA 61.760 66.667 6.95 6.95 46.87 4.55
2445 2566 4.154347 GCTCCGACCAGCCTGAGG 62.154 72.222 0.00 0.00 32.76 3.86
2446 2567 3.465403 CTCCGACCAGCCTGAGGG 61.465 72.222 0.00 0.00 0.00 4.30
2456 2577 4.120755 CCTGAGGGCAAGGGGAGC 62.121 72.222 0.00 0.00 0.00 4.70
2457 2578 3.333219 CTGAGGGCAAGGGGAGCA 61.333 66.667 0.00 0.00 0.00 4.26
2458 2579 3.635268 CTGAGGGCAAGGGGAGCAC 62.635 68.421 0.00 0.00 35.04 4.40
2459 2580 4.432741 GAGGGCAAGGGGAGCACC 62.433 72.222 0.00 0.00 35.54 5.01
2466 2587 4.482431 AGGGGAGCACCTTCTACC 57.518 61.111 0.00 0.00 37.69 3.18
2467 2588 1.474307 AGGGGAGCACCTTCTACCA 59.526 57.895 0.00 0.00 38.90 3.25
2468 2589 0.044855 AGGGGAGCACCTTCTACCAT 59.955 55.000 0.00 0.00 38.90 3.55
2469 2590 0.919710 GGGGAGCACCTTCTACCATT 59.080 55.000 0.00 0.00 38.90 3.16
2470 2591 1.134068 GGGGAGCACCTTCTACCATTC 60.134 57.143 0.00 0.00 38.90 2.67
2471 2592 1.840635 GGGAGCACCTTCTACCATTCT 59.159 52.381 0.00 0.00 37.03 2.40
2472 2593 2.239907 GGGAGCACCTTCTACCATTCTT 59.760 50.000 0.00 0.00 37.03 2.52
2473 2594 3.536570 GGAGCACCTTCTACCATTCTTC 58.463 50.000 0.00 0.00 0.00 2.87
2474 2595 3.055094 GGAGCACCTTCTACCATTCTTCA 60.055 47.826 0.00 0.00 0.00 3.02
2475 2596 4.384647 GGAGCACCTTCTACCATTCTTCAT 60.385 45.833 0.00 0.00 0.00 2.57
2476 2597 4.521146 AGCACCTTCTACCATTCTTCATG 58.479 43.478 0.00 0.00 0.00 3.07
2477 2598 4.225942 AGCACCTTCTACCATTCTTCATGA 59.774 41.667 0.00 0.00 34.31 3.07
2478 2599 4.574013 GCACCTTCTACCATTCTTCATGAG 59.426 45.833 0.00 0.00 34.31 2.90
2479 2600 4.574013 CACCTTCTACCATTCTTCATGAGC 59.426 45.833 0.00 0.00 34.31 4.26
2480 2601 3.806521 CCTTCTACCATTCTTCATGAGCG 59.193 47.826 0.00 0.00 34.31 5.03
2481 2602 2.826428 TCTACCATTCTTCATGAGCGC 58.174 47.619 0.00 0.00 34.31 5.92
2482 2603 1.869767 CTACCATTCTTCATGAGCGCC 59.130 52.381 2.29 0.00 34.31 6.53
2483 2604 0.035152 ACCATTCTTCATGAGCGCCA 60.035 50.000 2.29 1.52 34.31 5.69
2484 2605 1.315690 CCATTCTTCATGAGCGCCAT 58.684 50.000 2.29 4.41 34.31 4.40
2485 2606 1.266175 CCATTCTTCATGAGCGCCATC 59.734 52.381 2.29 0.00 34.31 3.51
2486 2607 1.070108 CATTCTTCATGAGCGCCATCG 60.070 52.381 2.29 3.25 34.31 3.84
2487 2608 0.108186 TTCTTCATGAGCGCCATCGT 60.108 50.000 2.29 0.00 38.14 3.73
2488 2609 0.528466 TCTTCATGAGCGCCATCGTC 60.528 55.000 2.29 0.00 38.14 4.20
2489 2610 1.815212 CTTCATGAGCGCCATCGTCG 61.815 60.000 2.29 0.00 38.14 5.12
2497 2618 4.160635 GCCATCGTCGCCGGTTTG 62.161 66.667 1.90 0.00 33.95 2.93
2498 2619 3.496131 CCATCGTCGCCGGTTTGG 61.496 66.667 1.90 0.00 42.50 3.28
2499 2620 2.740826 CATCGTCGCCGGTTTGGT 60.741 61.111 1.90 0.00 41.21 3.67
2505 2626 4.038080 CGCCGGTTTGGTGCCTTC 62.038 66.667 1.90 0.00 42.37 3.46
2506 2627 2.597510 GCCGGTTTGGTGCCTTCT 60.598 61.111 1.90 0.00 41.21 2.85
2507 2628 2.200337 GCCGGTTTGGTGCCTTCTT 61.200 57.895 1.90 0.00 41.21 2.52
2508 2629 1.744320 GCCGGTTTGGTGCCTTCTTT 61.744 55.000 1.90 0.00 41.21 2.52
2509 2630 0.313987 CCGGTTTGGTGCCTTCTTTC 59.686 55.000 0.00 0.00 0.00 2.62
2510 2631 1.318576 CGGTTTGGTGCCTTCTTTCT 58.681 50.000 0.00 0.00 0.00 2.52
2511 2632 1.266989 CGGTTTGGTGCCTTCTTTCTC 59.733 52.381 0.00 0.00 0.00 2.87
2512 2633 2.587522 GGTTTGGTGCCTTCTTTCTCT 58.412 47.619 0.00 0.00 0.00 3.10
2513 2634 2.294512 GGTTTGGTGCCTTCTTTCTCTG 59.705 50.000 0.00 0.00 0.00 3.35
2514 2635 3.214328 GTTTGGTGCCTTCTTTCTCTGA 58.786 45.455 0.00 0.00 0.00 3.27
2515 2636 2.847327 TGGTGCCTTCTTTCTCTGAG 57.153 50.000 0.00 0.00 0.00 3.35
2516 2637 2.050144 TGGTGCCTTCTTTCTCTGAGT 58.950 47.619 4.32 0.00 0.00 3.41
2517 2638 2.439507 TGGTGCCTTCTTTCTCTGAGTT 59.560 45.455 4.32 0.00 0.00 3.01
2518 2639 3.070748 GGTGCCTTCTTTCTCTGAGTTC 58.929 50.000 4.32 0.00 0.00 3.01
2519 2640 3.244387 GGTGCCTTCTTTCTCTGAGTTCT 60.244 47.826 4.32 0.00 0.00 3.01
2520 2641 4.384940 GTGCCTTCTTTCTCTGAGTTCTT 58.615 43.478 4.32 0.00 0.00 2.52
2521 2642 4.450757 GTGCCTTCTTTCTCTGAGTTCTTC 59.549 45.833 4.32 0.00 0.00 2.87
2522 2643 4.346418 TGCCTTCTTTCTCTGAGTTCTTCT 59.654 41.667 4.32 0.00 0.00 2.85
2523 2644 5.163258 TGCCTTCTTTCTCTGAGTTCTTCTT 60.163 40.000 4.32 0.00 0.00 2.52
2524 2645 5.762711 GCCTTCTTTCTCTGAGTTCTTCTTT 59.237 40.000 4.32 0.00 0.00 2.52
2525 2646 6.931840 GCCTTCTTTCTCTGAGTTCTTCTTTA 59.068 38.462 4.32 0.00 0.00 1.85
2526 2647 7.095397 GCCTTCTTTCTCTGAGTTCTTCTTTAC 60.095 40.741 4.32 0.00 0.00 2.01
2527 2648 7.386573 CCTTCTTTCTCTGAGTTCTTCTTTACC 59.613 40.741 4.32 0.00 0.00 2.85
2528 2649 6.448006 TCTTTCTCTGAGTTCTTCTTTACCG 58.552 40.000 4.32 0.00 0.00 4.02
2529 2650 5.786264 TTCTCTGAGTTCTTCTTTACCGT 57.214 39.130 4.32 0.00 0.00 4.83
2530 2651 5.786264 TCTCTGAGTTCTTCTTTACCGTT 57.214 39.130 4.32 0.00 0.00 4.44
2531 2652 5.770417 TCTCTGAGTTCTTCTTTACCGTTC 58.230 41.667 4.32 0.00 0.00 3.95
2532 2653 5.535406 TCTCTGAGTTCTTCTTTACCGTTCT 59.465 40.000 4.32 0.00 0.00 3.01
2533 2654 5.770417 TCTGAGTTCTTCTTTACCGTTCTC 58.230 41.667 0.00 0.00 0.00 2.87
2534 2655 4.879598 TGAGTTCTTCTTTACCGTTCTCC 58.120 43.478 0.00 0.00 0.00 3.71
2535 2656 3.910648 AGTTCTTCTTTACCGTTCTCCG 58.089 45.455 0.00 0.00 0.00 4.63
2536 2657 2.358939 TCTTCTTTACCGTTCTCCGC 57.641 50.000 0.00 0.00 34.38 5.54
2537 2658 1.067354 TCTTCTTTACCGTTCTCCGCC 60.067 52.381 0.00 0.00 34.38 6.13
2538 2659 0.680618 TTCTTTACCGTTCTCCGCCA 59.319 50.000 0.00 0.00 34.38 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
441 442 8.754080 AGCATACAACACTCTCTCTTAATTACT 58.246 33.333 0.00 0.00 0.00 2.24
548 549 8.733458 CAAGTCCTAAACATTTCATTCAGATCA 58.267 33.333 0.00 0.00 0.00 2.92
1032 1047 3.360249 ACAACAGCAGCAACATTCTTC 57.640 42.857 0.00 0.00 0.00 2.87
1083 1098 5.296531 GCCAACATTTTGAAGGAATGTGTTT 59.703 36.000 3.53 0.00 44.55 2.83
1085 1100 4.379652 GCCAACATTTTGAAGGAATGTGT 58.620 39.130 3.53 0.00 44.55 3.72
1284 1302 4.022849 GCCTCAACTCTTTGCAGTAACAAT 60.023 41.667 0.00 0.00 32.17 2.71
1505 1546 4.030216 ACCAACCAAAACAGAACCTCATT 58.970 39.130 0.00 0.00 0.00 2.57
1578 1626 6.095300 CACAGATTTATAAGATGCACCAACCA 59.905 38.462 0.00 0.00 0.00 3.67
1598 1646 4.180817 CAACAGTATCATTACGCCACAGA 58.819 43.478 0.00 0.00 33.32 3.41
1744 1834 9.516314 GCCCACTCATACAATTTAGTATTTTTC 57.484 33.333 0.00 0.00 32.56 2.29
1947 2061 4.806640 ATCAGTTGTTTTAATGGGCTGG 57.193 40.909 0.00 0.00 0.00 4.85
2136 2252 3.062909 CGAACAAACGTGACCTTTTCTGA 59.937 43.478 0.00 0.00 0.00 3.27
2267 2388 1.443872 GTGTCGGACGCCACTACAG 60.444 63.158 10.54 0.00 0.00 2.74
2276 2397 3.118454 GCCATGGTGTGTCGGACG 61.118 66.667 14.67 0.00 0.00 4.79
2277 2398 3.118454 CGCCATGGTGTGTCGGAC 61.118 66.667 17.59 0.00 0.00 4.79
2278 2399 3.307108 TCGCCATGGTGTGTCGGA 61.307 61.111 24.28 1.29 0.00 4.55
2279 2400 3.118454 GTCGCCATGGTGTGTCGG 61.118 66.667 24.28 0.60 0.00 4.79
2280 2401 2.048222 AGTCGCCATGGTGTGTCG 60.048 61.111 24.28 13.39 0.00 4.35
2281 2402 2.094659 CGAGTCGCCATGGTGTGTC 61.095 63.158 24.28 19.26 0.00 3.67
2282 2403 2.048222 CGAGTCGCCATGGTGTGT 60.048 61.111 24.28 13.03 0.00 3.72
2300 2421 0.323178 AAGCATCAGCCAGGGACTTG 60.323 55.000 0.00 0.00 43.56 3.16
2301 2422 0.323178 CAAGCATCAGCCAGGGACTT 60.323 55.000 0.00 0.00 43.56 3.01
2302 2423 1.302285 CAAGCATCAGCCAGGGACT 59.698 57.895 0.00 0.00 43.56 3.85
2303 2424 1.751927 CCAAGCATCAGCCAGGGAC 60.752 63.158 0.00 0.00 43.56 4.46
2304 2425 0.913934 TACCAAGCATCAGCCAGGGA 60.914 55.000 0.00 0.00 43.56 4.20
2305 2426 0.749454 GTACCAAGCATCAGCCAGGG 60.749 60.000 0.00 0.00 43.56 4.45
2306 2427 0.254178 AGTACCAAGCATCAGCCAGG 59.746 55.000 0.00 0.00 43.56 4.45
2307 2428 1.661341 GAGTACCAAGCATCAGCCAG 58.339 55.000 0.00 0.00 43.56 4.85
2308 2429 0.108186 CGAGTACCAAGCATCAGCCA 60.108 55.000 0.00 0.00 43.56 4.75
2309 2430 1.432270 GCGAGTACCAAGCATCAGCC 61.432 60.000 0.00 0.00 43.56 4.85
2310 2431 1.432270 GGCGAGTACCAAGCATCAGC 61.432 60.000 7.05 0.00 42.56 4.26
2311 2432 1.148157 CGGCGAGTACCAAGCATCAG 61.148 60.000 0.00 0.00 0.00 2.90
2312 2433 1.153647 CGGCGAGTACCAAGCATCA 60.154 57.895 0.00 0.00 0.00 3.07
2313 2434 1.883084 CCGGCGAGTACCAAGCATC 60.883 63.158 9.30 0.00 0.00 3.91
2314 2435 2.186903 CCGGCGAGTACCAAGCAT 59.813 61.111 9.30 0.00 0.00 3.79
2315 2436 4.752879 GCCGGCGAGTACCAAGCA 62.753 66.667 12.58 0.00 0.00 3.91
2317 2438 4.832608 GGGCCGGCGAGTACCAAG 62.833 72.222 22.54 0.00 0.00 3.61
2322 2443 4.853142 ATCCAGGGCCGGCGAGTA 62.853 66.667 22.54 4.82 0.00 2.59
2324 2445 4.918201 GAATCCAGGGCCGGCGAG 62.918 72.222 22.54 12.55 0.00 5.03
2335 2456 2.175202 CCGACAAATTTGGGGAATCCA 58.825 47.619 21.74 0.00 45.43 3.41
2336 2457 2.427095 CTCCGACAAATTTGGGGAATCC 59.573 50.000 24.62 0.00 35.44 3.01
2337 2458 3.352648 TCTCCGACAAATTTGGGGAATC 58.647 45.455 24.62 12.86 34.88 2.52
2338 2459 3.449746 TCTCCGACAAATTTGGGGAAT 57.550 42.857 24.62 6.37 34.88 3.01
2339 2460 2.961531 TCTCCGACAAATTTGGGGAA 57.038 45.000 24.62 16.54 34.88 3.97
2340 2461 2.373836 TCTTCTCCGACAAATTTGGGGA 59.626 45.455 23.68 23.68 36.27 4.81
2341 2462 2.790433 TCTTCTCCGACAAATTTGGGG 58.210 47.619 21.74 20.32 0.00 4.96
2342 2463 4.702131 AGATTCTTCTCCGACAAATTTGGG 59.298 41.667 21.74 14.04 0.00 4.12
2343 2464 5.446473 CGAGATTCTTCTCCGACAAATTTGG 60.446 44.000 21.74 4.95 44.76 3.28
2344 2465 5.554636 CGAGATTCTTCTCCGACAAATTTG 58.445 41.667 16.67 16.67 44.76 2.32
2345 2466 4.093556 GCGAGATTCTTCTCCGACAAATTT 59.906 41.667 0.00 0.00 44.76 1.82
2346 2467 3.619038 GCGAGATTCTTCTCCGACAAATT 59.381 43.478 0.00 0.00 44.76 1.82
2347 2468 3.190874 GCGAGATTCTTCTCCGACAAAT 58.809 45.455 0.00 0.00 44.76 2.32
2348 2469 2.607187 GCGAGATTCTTCTCCGACAAA 58.393 47.619 0.00 0.00 44.76 2.83
2349 2470 1.135083 GGCGAGATTCTTCTCCGACAA 60.135 52.381 0.00 0.00 44.76 3.18
2350 2471 0.456221 GGCGAGATTCTTCTCCGACA 59.544 55.000 0.00 0.00 44.76 4.35
2351 2472 0.249114 GGGCGAGATTCTTCTCCGAC 60.249 60.000 0.00 0.00 44.76 4.79
2352 2473 0.395862 AGGGCGAGATTCTTCTCCGA 60.396 55.000 0.00 0.00 44.76 4.55
2353 2474 0.031449 GAGGGCGAGATTCTTCTCCG 59.969 60.000 0.00 0.00 44.76 4.63
2354 2475 0.031449 CGAGGGCGAGATTCTTCTCC 59.969 60.000 0.00 0.00 44.76 3.71
2355 2476 0.596341 GCGAGGGCGAGATTCTTCTC 60.596 60.000 0.00 0.00 44.24 2.87
2356 2477 1.439644 GCGAGGGCGAGATTCTTCT 59.560 57.895 0.00 0.00 40.82 2.85
2357 2478 4.020128 GCGAGGGCGAGATTCTTC 57.980 61.111 0.00 0.00 40.82 2.87
2378 2499 4.758251 TGCGCCACCGTCATCAGG 62.758 66.667 4.18 0.00 36.67 3.86
2379 2500 3.190849 CTGCGCCACCGTCATCAG 61.191 66.667 4.18 0.00 36.67 2.90
2380 2501 4.758251 CCTGCGCCACCGTCATCA 62.758 66.667 4.18 0.00 36.67 3.07
2403 2524 4.459089 GAGCACAGTCGCCCCCTC 62.459 72.222 0.00 0.00 0.00 4.30
2405 2526 4.329545 TTGAGCACAGTCGCCCCC 62.330 66.667 0.00 0.00 0.00 5.40
2406 2527 2.743928 CTTGAGCACAGTCGCCCC 60.744 66.667 0.00 0.00 0.00 5.80
2407 2528 2.743928 CCTTGAGCACAGTCGCCC 60.744 66.667 0.00 0.00 0.00 6.13
2408 2529 2.029844 GACCTTGAGCACAGTCGCC 61.030 63.158 0.00 0.00 0.00 5.54
2409 2530 2.375766 CGACCTTGAGCACAGTCGC 61.376 63.158 11.68 0.00 44.61 5.19
2410 2531 3.848142 CGACCTTGAGCACAGTCG 58.152 61.111 10.53 10.53 45.07 4.18
2411 2532 2.029844 GCCGACCTTGAGCACAGTC 61.030 63.158 0.00 0.00 0.00 3.51
2412 2533 2.031163 GCCGACCTTGAGCACAGT 59.969 61.111 0.00 0.00 0.00 3.55
2413 2534 1.739562 GAGCCGACCTTGAGCACAG 60.740 63.158 0.00 0.00 0.00 3.66
2414 2535 2.343758 GAGCCGACCTTGAGCACA 59.656 61.111 0.00 0.00 0.00 4.57
2415 2536 2.435059 GGAGCCGACCTTGAGCAC 60.435 66.667 0.00 0.00 0.00 4.40
2416 2537 4.069232 CGGAGCCGACCTTGAGCA 62.069 66.667 2.00 0.00 42.83 4.26
2417 2538 3.760035 TCGGAGCCGACCTTGAGC 61.760 66.667 7.66 0.00 44.01 4.26
2428 2549 4.154347 CCTCAGGCTGGTCGGAGC 62.154 72.222 15.73 0.00 38.34 4.70
2429 2550 3.465403 CCCTCAGGCTGGTCGGAG 61.465 72.222 15.73 3.79 0.00 4.63
2439 2560 4.120755 GCTCCCCTTGCCCTCAGG 62.121 72.222 0.00 0.00 0.00 3.86
2440 2561 3.333219 TGCTCCCCTTGCCCTCAG 61.333 66.667 0.00 0.00 0.00 3.35
2441 2562 3.650950 GTGCTCCCCTTGCCCTCA 61.651 66.667 0.00 0.00 0.00 3.86
2442 2563 4.432741 GGTGCTCCCCTTGCCCTC 62.433 72.222 0.00 0.00 0.00 4.30
2444 2565 3.946126 GAAGGTGCTCCCCTTGCCC 62.946 68.421 0.00 0.00 44.91 5.36
2445 2566 1.562672 TAGAAGGTGCTCCCCTTGCC 61.563 60.000 0.00 0.00 44.91 4.52
2446 2567 0.393132 GTAGAAGGTGCTCCCCTTGC 60.393 60.000 0.00 0.00 44.91 4.01
2447 2568 0.253327 GGTAGAAGGTGCTCCCCTTG 59.747 60.000 0.00 0.00 44.91 3.61
2449 2570 0.044855 ATGGTAGAAGGTGCTCCCCT 59.955 55.000 0.00 1.99 35.96 4.79
2450 2571 0.919710 AATGGTAGAAGGTGCTCCCC 59.080 55.000 0.00 0.00 0.00 4.81
2451 2572 1.840635 AGAATGGTAGAAGGTGCTCCC 59.159 52.381 0.00 0.00 0.00 4.30
2452 2573 3.055094 TGAAGAATGGTAGAAGGTGCTCC 60.055 47.826 0.00 0.00 0.00 4.70
2453 2574 4.207891 TGAAGAATGGTAGAAGGTGCTC 57.792 45.455 0.00 0.00 0.00 4.26
2454 2575 4.225942 TCATGAAGAATGGTAGAAGGTGCT 59.774 41.667 0.00 0.00 36.86 4.40
2455 2576 4.517285 TCATGAAGAATGGTAGAAGGTGC 58.483 43.478 0.00 0.00 36.86 5.01
2456 2577 4.574013 GCTCATGAAGAATGGTAGAAGGTG 59.426 45.833 0.00 0.00 36.86 4.00
2457 2578 4.681781 CGCTCATGAAGAATGGTAGAAGGT 60.682 45.833 0.00 0.00 36.86 3.50
2458 2579 3.806521 CGCTCATGAAGAATGGTAGAAGG 59.193 47.826 0.00 0.00 36.86 3.46
2459 2580 3.247173 GCGCTCATGAAGAATGGTAGAAG 59.753 47.826 0.00 0.00 36.86 2.85
2460 2581 3.198068 GCGCTCATGAAGAATGGTAGAA 58.802 45.455 0.00 0.00 36.86 2.10
2461 2582 2.483714 GGCGCTCATGAAGAATGGTAGA 60.484 50.000 7.64 0.00 36.86 2.59
2462 2583 1.869767 GGCGCTCATGAAGAATGGTAG 59.130 52.381 7.64 0.00 36.86 3.18
2463 2584 1.209261 TGGCGCTCATGAAGAATGGTA 59.791 47.619 7.64 0.00 36.86 3.25
2464 2585 0.035152 TGGCGCTCATGAAGAATGGT 60.035 50.000 7.64 0.00 36.86 3.55
2465 2586 1.266175 GATGGCGCTCATGAAGAATGG 59.734 52.381 14.84 0.00 35.97 3.16
2466 2587 1.070108 CGATGGCGCTCATGAAGAATG 60.070 52.381 14.84 0.00 35.97 2.67
2467 2588 1.224075 CGATGGCGCTCATGAAGAAT 58.776 50.000 14.84 0.00 35.97 2.40
2468 2589 0.108186 ACGATGGCGCTCATGAAGAA 60.108 50.000 14.84 0.00 42.48 2.52
2469 2590 0.528466 GACGATGGCGCTCATGAAGA 60.528 55.000 14.84 0.00 42.48 2.87
2470 2591 1.815212 CGACGATGGCGCTCATGAAG 61.815 60.000 14.84 9.13 42.48 3.02
2471 2592 1.878069 CGACGATGGCGCTCATGAA 60.878 57.895 14.84 0.00 42.48 2.57
2472 2593 2.278792 CGACGATGGCGCTCATGA 60.279 61.111 14.84 0.00 42.48 3.07
2487 2608 4.572571 AAGGCACCAAACCGGCGA 62.573 61.111 9.30 0.00 39.03 5.54
2488 2609 4.038080 GAAGGCACCAAACCGGCG 62.038 66.667 0.00 0.00 39.03 6.46
2489 2610 1.744320 AAAGAAGGCACCAAACCGGC 61.744 55.000 0.00 0.00 39.03 6.13
2490 2611 0.313987 GAAAGAAGGCACCAAACCGG 59.686 55.000 0.00 0.00 42.50 5.28
2491 2612 1.266989 GAGAAAGAAGGCACCAAACCG 59.733 52.381 0.00 0.00 0.00 4.44
2492 2613 2.294512 CAGAGAAAGAAGGCACCAAACC 59.705 50.000 0.00 0.00 0.00 3.27
2493 2614 3.214328 TCAGAGAAAGAAGGCACCAAAC 58.786 45.455 0.00 0.00 0.00 2.93
2494 2615 3.117888 ACTCAGAGAAAGAAGGCACCAAA 60.118 43.478 3.79 0.00 0.00 3.28
2495 2616 2.439507 ACTCAGAGAAAGAAGGCACCAA 59.560 45.455 3.79 0.00 0.00 3.67
2496 2617 2.050144 ACTCAGAGAAAGAAGGCACCA 58.950 47.619 3.79 0.00 0.00 4.17
2497 2618 2.849294 ACTCAGAGAAAGAAGGCACC 57.151 50.000 3.79 0.00 0.00 5.01
2498 2619 4.001618 AGAACTCAGAGAAAGAAGGCAC 57.998 45.455 3.79 0.00 0.00 5.01
2499 2620 4.346418 AGAAGAACTCAGAGAAAGAAGGCA 59.654 41.667 3.79 0.00 0.00 4.75
2500 2621 4.893608 AGAAGAACTCAGAGAAAGAAGGC 58.106 43.478 3.79 0.00 0.00 4.35
2501 2622 7.386573 GGTAAAGAAGAACTCAGAGAAAGAAGG 59.613 40.741 3.79 0.00 0.00 3.46
2502 2623 7.115663 CGGTAAAGAAGAACTCAGAGAAAGAAG 59.884 40.741 3.79 0.00 0.00 2.85
2503 2624 6.924060 CGGTAAAGAAGAACTCAGAGAAAGAA 59.076 38.462 3.79 0.00 0.00 2.52
2504 2625 6.040616 ACGGTAAAGAAGAACTCAGAGAAAGA 59.959 38.462 3.79 0.00 0.00 2.52
2505 2626 6.217294 ACGGTAAAGAAGAACTCAGAGAAAG 58.783 40.000 3.79 0.00 0.00 2.62
2506 2627 6.158023 ACGGTAAAGAAGAACTCAGAGAAA 57.842 37.500 3.79 0.00 0.00 2.52
2507 2628 5.786264 ACGGTAAAGAAGAACTCAGAGAA 57.214 39.130 3.79 0.00 0.00 2.87
2508 2629 5.535406 AGAACGGTAAAGAAGAACTCAGAGA 59.465 40.000 3.79 0.00 0.00 3.10
2509 2630 5.774630 AGAACGGTAAAGAAGAACTCAGAG 58.225 41.667 0.00 0.00 0.00 3.35
2510 2631 5.278858 GGAGAACGGTAAAGAAGAACTCAGA 60.279 44.000 0.00 0.00 0.00 3.27
2511 2632 4.924462 GGAGAACGGTAAAGAAGAACTCAG 59.076 45.833 0.00 0.00 0.00 3.35
2512 2633 4.558095 CGGAGAACGGTAAAGAAGAACTCA 60.558 45.833 0.00 0.00 39.42 3.41
2513 2634 3.919197 CGGAGAACGGTAAAGAAGAACTC 59.081 47.826 0.00 0.00 39.42 3.01
2514 2635 3.860002 GCGGAGAACGGTAAAGAAGAACT 60.860 47.826 0.00 0.00 44.51 3.01
2515 2636 2.411069 GCGGAGAACGGTAAAGAAGAAC 59.589 50.000 0.00 0.00 44.51 3.01
2516 2637 2.611224 GGCGGAGAACGGTAAAGAAGAA 60.611 50.000 0.00 0.00 44.51 2.52
2517 2638 1.067354 GGCGGAGAACGGTAAAGAAGA 60.067 52.381 0.00 0.00 44.51 2.87
2518 2639 1.337447 TGGCGGAGAACGGTAAAGAAG 60.337 52.381 0.00 0.00 44.51 2.85
2519 2640 0.680618 TGGCGGAGAACGGTAAAGAA 59.319 50.000 0.00 0.00 44.51 2.52
2520 2641 2.353858 TGGCGGAGAACGGTAAAGA 58.646 52.632 0.00 0.00 44.51 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.