Multiple sequence alignment - TraesCS4A01G262200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G262200 chr4A 100.000 3985 0 0 1 3985 574523909 574527893 0.000000e+00 7360.0
1 TraesCS4A01G262200 chr4A 90.458 262 24 1 2184 2445 731942253 731942513 1.060000e-90 344.0
2 TraesCS4A01G262200 chr4A 89.655 174 17 1 2383 2555 731942513 731942686 1.860000e-53 220.0
3 TraesCS4A01G262200 chr4B 93.159 2441 84 24 585 2988 41553638 41551244 0.000000e+00 3506.0
4 TraesCS4A01G262200 chr4B 91.850 319 18 7 3674 3985 41550703 41550386 4.730000e-119 438.0
5 TraesCS4A01G262200 chr4B 86.911 191 18 3 267 457 41553807 41553624 1.450000e-49 207.0
6 TraesCS4A01G262200 chr4D 92.777 2312 102 19 668 2951 29022414 29020140 0.000000e+00 3284.0
7 TraesCS4A01G262200 chr4D 89.372 414 35 7 3576 3985 28995086 28994678 2.750000e-141 512.0
8 TraesCS4A01G262200 chr4D 87.083 240 17 4 1 240 29022823 29022598 3.950000e-65 259.0
9 TraesCS4A01G262200 chr4D 93.333 75 3 2 459 532 490975475 490975402 4.210000e-20 110.0
10 TraesCS4A01G262200 chr4D 93.151 73 5 0 460 532 25504143 25504215 1.510000e-19 108.0
11 TraesCS4A01G262200 chr6B 88.579 359 41 0 1246 1604 640356551 640356193 1.700000e-118 436.0
12 TraesCS4A01G262200 chr6B 93.846 130 7 1 1669 1798 640356169 640356041 1.130000e-45 195.0
13 TraesCS4A01G262200 chr3D 95.181 83 4 0 3223 3305 352155073 352154991 8.990000e-27 132.0
14 TraesCS4A01G262200 chr3D 94.521 73 4 0 458 530 595885023 595884951 3.250000e-21 113.0
15 TraesCS4A01G262200 chr7D 93.976 83 5 0 3223 3305 555661245 555661163 4.180000e-25 126.0
16 TraesCS4A01G262200 chr5B 93.976 83 5 0 3223 3305 248393532 248393450 4.180000e-25 126.0
17 TraesCS4A01G262200 chr5B 88.660 97 11 0 3209 3305 336209669 336209765 7.000000e-23 119.0
18 TraesCS4A01G262200 chr5B 91.892 74 6 0 457 530 478502599 478502526 1.960000e-18 104.0
19 TraesCS4A01G262200 chr2D 93.976 83 5 0 3223 3305 629407409 629407327 4.180000e-25 126.0
20 TraesCS4A01G262200 chr7B 92.941 85 6 0 3221 3305 134634118 134634202 1.500000e-24 124.0
21 TraesCS4A01G262200 chr7B 91.781 73 6 0 459 531 716464095 716464167 7.050000e-18 102.0
22 TraesCS4A01G262200 chr7A 92.941 85 6 0 3221 3305 61815919 61816003 1.500000e-24 124.0
23 TraesCS4A01G262200 chr7A 94.118 68 4 0 456 523 666030466 666030533 1.960000e-18 104.0
24 TraesCS4A01G262200 chr7A 86.813 91 3 1 1708 1798 729889715 729889796 4.240000e-15 93.5
25 TraesCS4A01G262200 chr7A 91.667 48 2 2 3308 3353 730049800 730049753 9.240000e-07 65.8
26 TraesCS4A01G262200 chr7A 91.667 48 2 2 3308 3353 730129346 730129299 9.240000e-07 65.8
27 TraesCS4A01G262200 chr5D 89.583 96 8 2 3212 3305 521371691 521371596 1.950000e-23 121.0
28 TraesCS4A01G262200 chr3A 95.775 71 3 0 457 527 679650982 679651052 9.050000e-22 115.0
29 TraesCS4A01G262200 chr1D 81.395 129 20 3 3220 3347 366687688 366687813 7.050000e-18 102.0
30 TraesCS4A01G262200 chr2B 94.030 67 2 2 459 524 476559481 476559546 2.530000e-17 100.0
31 TraesCS4A01G262200 chrUn 89.744 78 7 1 453 530 52139055 52138979 9.110000e-17 99.0
32 TraesCS4A01G262200 chrUn 91.667 48 2 2 3308 3353 83720174 83720127 9.240000e-07 65.8
33 TraesCS4A01G262200 chrUn 91.667 48 2 2 3308 3353 184041633 184041586 9.240000e-07 65.8
34 TraesCS4A01G262200 chrUn 91.667 48 2 2 3308 3353 191238941 191238988 9.240000e-07 65.8
35 TraesCS4A01G262200 chrUn 91.667 48 2 2 3308 3353 195495778 195495731 9.240000e-07 65.8
36 TraesCS4A01G262200 chr1B 95.556 45 1 1 3304 3347 662176707 662176751 1.990000e-08 71.3
37 TraesCS4A01G262200 chr5A 91.667 48 2 2 3308 3353 227557089 227557042 9.240000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G262200 chr4A 574523909 574527893 3984 False 7360.000000 7360 100.0000 1 3985 1 chr4A.!!$F1 3984
1 TraesCS4A01G262200 chr4B 41550386 41553807 3421 True 1383.666667 3506 90.6400 267 3985 3 chr4B.!!$R1 3718
2 TraesCS4A01G262200 chr4D 29020140 29022823 2683 True 1771.500000 3284 89.9300 1 2951 2 chr4D.!!$R3 2950
3 TraesCS4A01G262200 chr6B 640356041 640356551 510 True 315.500000 436 91.2125 1246 1798 2 chr6B.!!$R1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.038892 TGTCGGGTTTGTCGTAGAGC 60.039 55.0 0.00 0.00 36.95 4.09 F
521 522 0.179089 CCAGCCCATCTGAGTTCGAG 60.179 60.0 0.00 0.00 45.72 4.04 F
522 523 0.534412 CAGCCCATCTGAGTTCGAGT 59.466 55.0 0.00 0.00 45.72 4.18 F
2110 2162 0.605319 TCAAGAACGGCGCCAAGATT 60.605 50.0 28.98 14.69 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 1294 0.038744 ACCTGCAACAATGGGAGAGG 59.961 55.000 0.00 0.0 0.00 3.69 R
2110 2162 0.251165 CGCCTCCCCCTTTCTTGAAA 60.251 55.000 0.00 0.0 0.00 2.69 R
2176 2228 4.626402 TCCCCGTCGTTCCACCCT 62.626 66.667 0.00 0.0 0.00 4.34 R
3404 3529 0.105593 TCTCATCCGATGCCTCTTGC 59.894 55.000 3.25 0.0 41.77 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 7.185453 GCTGTATCATGAACATTCTTGAGTTC 58.815 38.462 13.62 0.00 42.31 3.01
109 110 0.038892 TGTCGGGTTTGTCGTAGAGC 60.039 55.000 0.00 0.00 36.95 4.09
124 125 6.856426 TGTCGTAGAGCTGTATTTTATCATCG 59.144 38.462 0.00 0.00 36.95 3.84
128 129 5.223382 AGAGCTGTATTTTATCATCGGTCG 58.777 41.667 0.00 0.00 0.00 4.79
129 130 4.945246 AGCTGTATTTTATCATCGGTCGT 58.055 39.130 0.00 0.00 0.00 4.34
130 131 5.357257 AGCTGTATTTTATCATCGGTCGTT 58.643 37.500 0.00 0.00 0.00 3.85
131 132 5.462398 AGCTGTATTTTATCATCGGTCGTTC 59.538 40.000 0.00 0.00 0.00 3.95
132 133 5.462398 GCTGTATTTTATCATCGGTCGTTCT 59.538 40.000 0.00 0.00 0.00 3.01
133 134 6.639686 GCTGTATTTTATCATCGGTCGTTCTA 59.360 38.462 0.00 0.00 0.00 2.10
134 135 7.148950 GCTGTATTTTATCATCGGTCGTTCTAG 60.149 40.741 0.00 0.00 0.00 2.43
135 136 7.709947 TGTATTTTATCATCGGTCGTTCTAGT 58.290 34.615 0.00 0.00 0.00 2.57
136 137 8.839343 TGTATTTTATCATCGGTCGTTCTAGTA 58.161 33.333 0.00 0.00 0.00 1.82
137 138 9.837525 GTATTTTATCATCGGTCGTTCTAGTAT 57.162 33.333 0.00 0.00 0.00 2.12
138 139 8.967552 ATTTTATCATCGGTCGTTCTAGTATC 57.032 34.615 0.00 0.00 0.00 2.24
139 140 7.500720 TTTATCATCGGTCGTTCTAGTATCA 57.499 36.000 0.00 0.00 0.00 2.15
140 141 4.808077 TCATCGGTCGTTCTAGTATCAC 57.192 45.455 0.00 0.00 0.00 3.06
173 174 2.799126 ATTATGTCCTTGCCACGGAA 57.201 45.000 0.00 0.00 31.13 4.30
174 175 2.570415 TTATGTCCTTGCCACGGAAA 57.430 45.000 0.00 0.00 31.13 3.13
176 177 1.247567 ATGTCCTTGCCACGGAAAAG 58.752 50.000 0.00 0.00 31.13 2.27
183 184 2.494530 GCCACGGAAAAGGTTGCCA 61.495 57.895 0.00 0.00 0.00 4.92
197 198 1.273327 GTTGCCATTGCTAGTTTGCCT 59.727 47.619 0.00 0.00 38.71 4.75
198 199 1.176527 TGCCATTGCTAGTTTGCCTC 58.823 50.000 0.00 0.00 38.71 4.70
231 232 2.192664 TTGTTGTGTGTCACCTGTGT 57.807 45.000 0.00 0.00 32.73 3.72
232 233 1.732941 TGTTGTGTGTCACCTGTGTC 58.267 50.000 0.00 0.00 32.73 3.67
235 236 0.248012 TGTGTGTCACCTGTGTCGTT 59.752 50.000 0.00 0.00 32.73 3.85
236 237 0.650512 GTGTGTCACCTGTGTCGTTG 59.349 55.000 0.00 0.00 0.00 4.10
237 238 1.087202 TGTGTCACCTGTGTCGTTGC 61.087 55.000 0.00 0.00 0.00 4.17
238 239 1.522806 TGTCACCTGTGTCGTTGCC 60.523 57.895 0.00 0.00 0.00 4.52
239 240 1.522806 GTCACCTGTGTCGTTGCCA 60.523 57.895 0.00 0.00 0.00 4.92
240 241 1.522806 TCACCTGTGTCGTTGCCAC 60.523 57.895 0.00 0.00 0.00 5.01
249 250 3.339731 CGTTGCCACGGACAATGT 58.660 55.556 1.68 0.00 43.16 2.71
250 251 1.652012 CGTTGCCACGGACAATGTT 59.348 52.632 1.68 0.00 43.16 2.71
251 252 0.385473 CGTTGCCACGGACAATGTTC 60.385 55.000 1.68 0.00 43.16 3.18
252 253 0.385473 GTTGCCACGGACAATGTTCG 60.385 55.000 13.16 13.16 40.82 3.95
253 254 0.533085 TTGCCACGGACAATGTTCGA 60.533 50.000 22.07 0.00 36.53 3.71
254 255 0.321210 TGCCACGGACAATGTTCGAT 60.321 50.000 22.07 2.07 36.53 3.59
255 256 0.373716 GCCACGGACAATGTTCGATC 59.626 55.000 22.07 5.23 36.53 3.69
256 257 1.006832 CCACGGACAATGTTCGATCC 58.993 55.000 22.07 0.00 36.53 3.36
257 258 1.405526 CCACGGACAATGTTCGATCCT 60.406 52.381 22.07 0.00 36.53 3.24
258 259 1.927174 CACGGACAATGTTCGATCCTC 59.073 52.381 22.07 0.00 36.53 3.71
259 260 1.548719 ACGGACAATGTTCGATCCTCA 59.451 47.619 22.07 0.00 36.53 3.86
260 261 2.028476 ACGGACAATGTTCGATCCTCAA 60.028 45.455 22.07 0.00 36.53 3.02
261 262 2.604914 CGGACAATGTTCGATCCTCAAG 59.395 50.000 8.66 0.00 36.53 3.02
262 263 2.352960 GGACAATGTTCGATCCTCAAGC 59.647 50.000 0.00 0.00 0.00 4.01
263 264 2.352960 GACAATGTTCGATCCTCAAGCC 59.647 50.000 0.00 0.00 0.00 4.35
264 265 2.290260 ACAATGTTCGATCCTCAAGCCA 60.290 45.455 0.00 0.00 0.00 4.75
265 266 2.749076 CAATGTTCGATCCTCAAGCCAA 59.251 45.455 0.00 0.00 0.00 4.52
266 267 2.099141 TGTTCGATCCTCAAGCCAAG 57.901 50.000 0.00 0.00 0.00 3.61
267 268 1.623311 TGTTCGATCCTCAAGCCAAGA 59.377 47.619 0.00 0.00 0.00 3.02
268 269 2.275318 GTTCGATCCTCAAGCCAAGAG 58.725 52.381 0.00 0.00 0.00 2.85
269 270 1.561643 TCGATCCTCAAGCCAAGAGT 58.438 50.000 0.00 0.00 0.00 3.24
270 271 1.205655 TCGATCCTCAAGCCAAGAGTG 59.794 52.381 0.00 0.00 0.00 3.51
312 313 0.742505 TATCTACCTTGCACGGTCGG 59.257 55.000 19.55 12.90 38.49 4.79
358 359 2.576002 GCCGTGCACAAAAGTTGCG 61.576 57.895 18.64 0.00 43.34 4.85
359 360 1.063327 CCGTGCACAAAAGTTGCGA 59.937 52.632 18.64 0.00 43.34 5.10
367 368 3.363673 GCACAAAAGTTGCGAGTAGGTAC 60.364 47.826 0.00 0.00 0.00 3.34
369 370 5.224888 CACAAAAGTTGCGAGTAGGTACTA 58.775 41.667 0.00 0.00 41.75 1.82
373 374 8.090214 ACAAAAGTTGCGAGTAGGTACTAATAA 58.910 33.333 0.00 0.00 45.48 1.40
374 375 9.095065 CAAAAGTTGCGAGTAGGTACTAATAAT 57.905 33.333 0.00 0.00 45.48 1.28
378 379 9.517868 AGTTGCGAGTAGGTACTAATAATATCT 57.482 33.333 0.00 0.00 45.48 1.98
379 380 9.557338 GTTGCGAGTAGGTACTAATAATATCTG 57.443 37.037 0.00 0.00 45.48 2.90
380 381 8.277490 TGCGAGTAGGTACTAATAATATCTGG 57.723 38.462 0.00 0.00 45.48 3.86
381 382 7.338703 TGCGAGTAGGTACTAATAATATCTGGG 59.661 40.741 0.00 0.00 45.48 4.45
387 388 2.829720 ACTAATAATATCTGGGCGCCGA 59.170 45.455 22.54 17.25 0.00 5.54
459 460 1.134367 CTCGAAATAGAGGGTGCGTGA 59.866 52.381 0.00 0.00 34.74 4.35
462 463 1.480954 GAAATAGAGGGTGCGTGAGGA 59.519 52.381 0.00 0.00 0.00 3.71
484 485 4.424566 GCGTCGACCCGTTGGCTA 62.425 66.667 10.58 0.00 33.59 3.93
485 486 2.202570 CGTCGACCCGTTGGCTAG 60.203 66.667 10.58 0.00 33.59 3.42
486 487 2.183555 GTCGACCCGTTGGCTAGG 59.816 66.667 3.51 0.00 33.59 3.02
487 488 3.766691 TCGACCCGTTGGCTAGGC 61.767 66.667 9.85 9.85 33.59 3.93
488 489 4.077184 CGACCCGTTGGCTAGGCA 62.077 66.667 16.16 16.16 33.59 4.75
489 490 2.125106 GACCCGTTGGCTAGGCAG 60.125 66.667 19.32 10.25 33.59 4.85
498 499 4.215349 GCTAGGCAGCTGAGGTTG 57.785 61.111 20.43 3.83 44.93 3.77
499 500 2.111582 GCTAGGCAGCTGAGGTTGC 61.112 63.158 20.43 10.49 46.58 4.17
500 501 1.601171 CTAGGCAGCTGAGGTTGCT 59.399 57.895 20.43 0.00 46.51 3.91
505 506 2.033757 AGCTGAGGTTGCTGCCAG 59.966 61.111 0.00 0.00 39.56 4.85
506 507 3.745803 GCTGAGGTTGCTGCCAGC 61.746 66.667 10.45 10.45 44.00 4.85
507 508 3.060615 CTGAGGTTGCTGCCAGCC 61.061 66.667 15.29 0.00 41.51 4.85
508 509 4.666253 TGAGGTTGCTGCCAGCCC 62.666 66.667 15.29 9.16 42.79 5.19
509 510 4.666253 GAGGTTGCTGCCAGCCCA 62.666 66.667 15.29 0.00 42.79 5.36
510 511 3.951769 GAGGTTGCTGCCAGCCCAT 62.952 63.158 15.29 1.83 42.79 4.00
511 512 3.455469 GGTTGCTGCCAGCCCATC 61.455 66.667 15.29 0.00 41.51 3.51
512 513 2.362120 GTTGCTGCCAGCCCATCT 60.362 61.111 15.29 0.00 41.51 2.90
513 514 2.361992 TTGCTGCCAGCCCATCTG 60.362 61.111 15.29 0.00 41.51 2.90
514 515 2.909549 TTGCTGCCAGCCCATCTGA 61.910 57.895 15.29 0.00 45.72 3.27
515 516 2.516460 GCTGCCAGCCCATCTGAG 60.516 66.667 5.06 0.00 45.72 3.35
516 517 2.996395 CTGCCAGCCCATCTGAGT 59.004 61.111 0.00 0.00 45.72 3.41
517 518 1.302285 CTGCCAGCCCATCTGAGTT 59.698 57.895 0.00 0.00 45.72 3.01
518 519 0.747283 CTGCCAGCCCATCTGAGTTC 60.747 60.000 0.00 0.00 45.72 3.01
519 520 1.817099 GCCAGCCCATCTGAGTTCG 60.817 63.158 0.00 0.00 45.72 3.95
520 521 1.900351 CCAGCCCATCTGAGTTCGA 59.100 57.895 0.00 0.00 45.72 3.71
521 522 0.179089 CCAGCCCATCTGAGTTCGAG 60.179 60.000 0.00 0.00 45.72 4.04
522 523 0.534412 CAGCCCATCTGAGTTCGAGT 59.466 55.000 0.00 0.00 45.72 4.18
523 524 0.820871 AGCCCATCTGAGTTCGAGTC 59.179 55.000 0.00 0.00 0.00 3.36
524 525 0.820871 GCCCATCTGAGTTCGAGTCT 59.179 55.000 0.00 0.00 0.00 3.24
525 526 1.202359 GCCCATCTGAGTTCGAGTCTC 60.202 57.143 11.20 11.20 0.00 3.36
526 527 1.064803 CCCATCTGAGTTCGAGTCTCG 59.935 57.143 16.33 16.33 42.10 4.04
538 539 2.973419 GAGTCTCGACTCGTGAAGTT 57.027 50.000 10.94 0.00 46.93 2.66
539 540 3.270962 GAGTCTCGACTCGTGAAGTTT 57.729 47.619 10.94 0.00 46.93 2.66
540 541 3.227948 GAGTCTCGACTCGTGAAGTTTC 58.772 50.000 10.94 0.00 46.93 2.78
541 542 2.879646 AGTCTCGACTCGTGAAGTTTCT 59.120 45.455 4.83 0.00 38.74 2.52
542 543 3.058777 AGTCTCGACTCGTGAAGTTTCTC 60.059 47.826 4.83 0.00 38.74 2.87
543 544 3.058777 GTCTCGACTCGTGAAGTTTCTCT 60.059 47.826 4.83 0.00 38.74 3.10
544 545 3.564644 TCTCGACTCGTGAAGTTTCTCTT 59.435 43.478 0.75 0.00 38.74 2.85
545 546 4.753610 TCTCGACTCGTGAAGTTTCTCTTA 59.246 41.667 0.75 0.00 38.74 2.10
546 547 5.411977 TCTCGACTCGTGAAGTTTCTCTTAT 59.588 40.000 0.75 0.00 38.74 1.73
547 548 5.629097 TCGACTCGTGAAGTTTCTCTTATC 58.371 41.667 0.00 0.00 38.74 1.75
548 549 5.180680 TCGACTCGTGAAGTTTCTCTTATCA 59.819 40.000 0.00 0.00 38.74 2.15
549 550 5.856986 CGACTCGTGAAGTTTCTCTTATCAA 59.143 40.000 0.00 0.00 38.74 2.57
550 551 6.362551 CGACTCGTGAAGTTTCTCTTATCAAA 59.637 38.462 0.00 0.00 38.74 2.69
551 552 7.096189 CGACTCGTGAAGTTTCTCTTATCAAAA 60.096 37.037 0.00 0.00 38.74 2.44
552 553 8.433421 ACTCGTGAAGTTTCTCTTATCAAAAA 57.567 30.769 0.00 0.00 33.03 1.94
572 573 6.894339 AAAAATGTCAACGAGGATTAGGTT 57.106 33.333 0.00 0.00 0.00 3.50
573 574 6.894339 AAAATGTCAACGAGGATTAGGTTT 57.106 33.333 0.00 0.00 0.00 3.27
574 575 6.894339 AAATGTCAACGAGGATTAGGTTTT 57.106 33.333 0.00 0.00 0.00 2.43
575 576 7.989416 AAATGTCAACGAGGATTAGGTTTTA 57.011 32.000 0.00 0.00 0.00 1.52
576 577 8.575649 AAATGTCAACGAGGATTAGGTTTTAT 57.424 30.769 0.00 0.00 0.00 1.40
577 578 8.575649 AATGTCAACGAGGATTAGGTTTTATT 57.424 30.769 0.00 0.00 0.00 1.40
578 579 7.989416 TGTCAACGAGGATTAGGTTTTATTT 57.011 32.000 0.00 0.00 0.00 1.40
579 580 9.675464 ATGTCAACGAGGATTAGGTTTTATTTA 57.325 29.630 0.00 0.00 0.00 1.40
580 581 9.675464 TGTCAACGAGGATTAGGTTTTATTTAT 57.325 29.630 0.00 0.00 0.00 1.40
598 599 9.796120 TTTATTTATTTTGAAATAGAGGGTGCG 57.204 29.630 0.00 0.00 33.82 5.34
599 600 3.782889 ATTTTGAAATAGAGGGTGCGC 57.217 42.857 0.00 0.00 0.00 6.09
600 601 1.083489 TTTGAAATAGAGGGTGCGCG 58.917 50.000 0.00 0.00 0.00 6.86
601 602 0.742990 TTGAAATAGAGGGTGCGCGG 60.743 55.000 8.83 0.00 0.00 6.46
650 652 2.124736 ATGCGTCGTCCAATGGGG 60.125 61.111 0.00 0.00 38.37 4.96
651 653 3.697439 ATGCGTCGTCCAATGGGGG 62.697 63.158 0.00 0.00 37.22 5.40
660 662 1.304879 CCAATGGGGGCGGAAAAGA 60.305 57.895 0.00 0.00 0.00 2.52
684 686 1.326548 CGCCAGCGTTTATTCAGTACC 59.673 52.381 3.35 0.00 34.35 3.34
685 687 1.669265 GCCAGCGTTTATTCAGTACCC 59.331 52.381 0.00 0.00 0.00 3.69
707 712 3.072476 CGTATATCCACCAATCCAGGGTT 59.928 47.826 0.00 0.00 36.19 4.11
782 795 4.660938 GGCCCCGGCATCATACCC 62.661 72.222 8.23 0.00 44.11 3.69
789 802 0.877071 CGGCATCATACCCATCTTGC 59.123 55.000 0.00 0.00 0.00 4.01
799 812 1.153107 CCATCTTGCCATCGGAGCA 60.153 57.895 0.00 0.00 38.81 4.26
817 836 2.158827 AGCAAAACCACATCCAAAACCC 60.159 45.455 0.00 0.00 0.00 4.11
828 847 3.660111 AAAACCCAGCGTGCGAGC 61.660 61.111 0.00 0.00 37.41 5.03
842 861 2.356793 GAGCGAGGCATCATCCCG 60.357 66.667 0.00 0.00 0.00 5.14
949 968 3.226777 CCAGATCCCAGGTAGAGTAGTG 58.773 54.545 0.00 0.00 0.00 2.74
960 982 3.118847 GGTAGAGTAGTGGTTGGTTAGCC 60.119 52.174 0.00 0.00 0.00 3.93
1194 1234 5.437060 TCCCTGCATTATTGGTTTCTACTC 58.563 41.667 0.00 0.00 0.00 2.59
1195 1235 5.191722 TCCCTGCATTATTGGTTTCTACTCT 59.808 40.000 0.00 0.00 0.00 3.24
1196 1236 6.385759 TCCCTGCATTATTGGTTTCTACTCTA 59.614 38.462 0.00 0.00 0.00 2.43
1240 1283 2.811431 TCGTTGATTGATGTGTGGGTTC 59.189 45.455 0.00 0.00 0.00 3.62
1241 1284 2.412716 CGTTGATTGATGTGTGGGTTCG 60.413 50.000 0.00 0.00 0.00 3.95
1242 1285 2.811431 GTTGATTGATGTGTGGGTTCGA 59.189 45.455 0.00 0.00 0.00 3.71
1243 1286 2.422597 TGATTGATGTGTGGGTTCGAC 58.577 47.619 0.00 0.00 0.00 4.20
1251 1294 4.651008 TGGGTTCGACCGACGTGC 62.651 66.667 0.00 0.00 39.83 5.34
1468 1511 3.604667 CAGCCCAACAGCCGCAAA 61.605 61.111 0.00 0.00 0.00 3.68
1484 1527 2.448582 AAACTCCACGGCCACCTCA 61.449 57.895 2.24 0.00 0.00 3.86
1573 1616 4.329545 GTCTGGGCCTTCCACGCA 62.330 66.667 4.53 0.00 41.46 5.24
1575 1618 3.365265 CTGGGCCTTCCACGCAAC 61.365 66.667 4.53 0.00 41.46 4.17
1576 1619 3.850098 CTGGGCCTTCCACGCAACT 62.850 63.158 4.53 0.00 41.46 3.16
1577 1620 3.365265 GGGCCTTCCACGCAACTG 61.365 66.667 0.84 0.00 35.00 3.16
1578 1621 4.043200 GGCCTTCCACGCAACTGC 62.043 66.667 0.00 0.00 37.78 4.40
1579 1622 4.043200 GCCTTCCACGCAACTGCC 62.043 66.667 0.00 0.00 37.91 4.85
1580 1623 3.726517 CCTTCCACGCAACTGCCG 61.727 66.667 0.00 0.00 37.91 5.69
1581 1624 3.726517 CTTCCACGCAACTGCCGG 61.727 66.667 0.00 0.00 37.91 6.13
1582 1625 4.555709 TTCCACGCAACTGCCGGT 62.556 61.111 1.90 0.00 37.91 5.28
2101 2153 1.439679 CCTGGTACTTCAAGAACGGC 58.560 55.000 0.00 0.00 0.00 5.68
2108 2160 1.227704 TTCAAGAACGGCGCCAAGA 60.228 52.632 28.98 11.19 0.00 3.02
2110 2162 0.605319 TCAAGAACGGCGCCAAGATT 60.605 50.000 28.98 14.69 0.00 2.40
2214 2266 1.343465 GTACTGGATGGACATACCGGG 59.657 57.143 6.32 0.00 42.61 5.73
2323 2375 2.666207 GACGTGGCCATGTGGGTA 59.334 61.111 34.99 0.00 39.65 3.69
2701 2753 2.128507 GGCGGAGTACCTGGGAGAG 61.129 68.421 0.00 0.00 0.00 3.20
2794 2846 4.530857 GGGACGGAGCGGATGGTG 62.531 72.222 0.00 0.00 0.00 4.17
3001 3094 3.060230 TCGAATTGTGAGCGTTTGTATCG 59.940 43.478 0.00 0.00 0.00 2.92
3002 3095 3.181534 CGAATTGTGAGCGTTTGTATCGT 60.182 43.478 0.00 0.00 0.00 3.73
3003 3096 3.991605 ATTGTGAGCGTTTGTATCGTC 57.008 42.857 0.00 0.00 0.00 4.20
3004 3097 1.705256 TGTGAGCGTTTGTATCGTCC 58.295 50.000 0.00 0.00 0.00 4.79
3005 3098 1.000052 TGTGAGCGTTTGTATCGTCCA 60.000 47.619 0.00 0.00 0.00 4.02
3006 3099 2.063266 GTGAGCGTTTGTATCGTCCAA 58.937 47.619 0.00 0.00 0.00 3.53
3007 3100 2.671396 GTGAGCGTTTGTATCGTCCAAT 59.329 45.455 0.00 0.00 0.00 3.16
3008 3101 2.670905 TGAGCGTTTGTATCGTCCAATG 59.329 45.455 0.00 0.00 0.00 2.82
3030 3123 5.901552 TGTCCAATGGAAGTGAAAAAGTTC 58.098 37.500 2.31 0.00 37.48 3.01
3042 3135 7.334844 AGTGAAAAAGTTCCAACTAAAGAGG 57.665 36.000 0.00 0.00 38.57 3.69
3046 3139 7.394923 TGAAAAAGTTCCAACTAAAGAGGACAA 59.605 33.333 0.00 0.00 38.57 3.18
3047 3140 6.694877 AAAGTTCCAACTAAAGAGGACAAC 57.305 37.500 0.00 0.00 38.57 3.32
3048 3141 4.715713 AGTTCCAACTAAAGAGGACAACC 58.284 43.478 0.00 0.00 37.52 3.77
3049 3142 4.412528 AGTTCCAACTAAAGAGGACAACCT 59.587 41.667 0.00 0.00 42.98 3.50
3050 3143 5.104067 AGTTCCAACTAAAGAGGACAACCTT 60.104 40.000 0.00 0.00 41.42 3.50
3051 3144 6.580456 AGTTCCAACTAAAGAGGACAACCTTT 60.580 38.462 0.00 0.00 41.42 3.11
3055 3148 6.096282 CCAACTAAAGAGGACAACCTTTTTCA 59.904 38.462 7.81 0.00 43.97 2.69
3056 3149 7.363443 CCAACTAAAGAGGACAACCTTTTTCAA 60.363 37.037 7.81 0.00 43.97 2.69
3058 3151 8.129496 ACTAAAGAGGACAACCTTTTTCAAAA 57.871 30.769 7.81 0.00 43.97 2.44
3060 3153 6.170506 AAAGAGGACAACCTTTTTCAAAACC 58.829 36.000 0.00 0.00 43.97 3.27
3061 3154 4.118093 AGGACAACCTTTTTCAAAACCG 57.882 40.909 0.00 0.00 45.36 4.44
3062 3155 2.605818 GGACAACCTTTTTCAAAACCGC 59.394 45.455 0.00 0.00 0.00 5.68
3063 3156 2.263945 ACAACCTTTTTCAAAACCGCG 58.736 42.857 0.00 0.00 0.00 6.46
3067 3165 2.885894 ACCTTTTTCAAAACCGCGGATA 59.114 40.909 35.90 8.96 0.00 2.59
3095 3193 2.159226 ACGGAAGATTGGAGTAGCTTCG 60.159 50.000 0.00 0.00 38.05 3.79
3101 3199 5.606348 AGATTGGAGTAGCTTCGAAATCT 57.394 39.130 0.00 2.06 31.58 2.40
3103 3201 7.113658 AGATTGGAGTAGCTTCGAAATCTAA 57.886 36.000 12.90 1.12 33.22 2.10
3104 3202 7.206687 AGATTGGAGTAGCTTCGAAATCTAAG 58.793 38.462 12.90 0.00 33.22 2.18
3105 3203 5.916661 TGGAGTAGCTTCGAAATCTAAGT 57.083 39.130 0.00 0.00 0.00 2.24
3106 3204 5.892568 TGGAGTAGCTTCGAAATCTAAGTC 58.107 41.667 0.00 4.71 0.00 3.01
3107 3205 5.417894 TGGAGTAGCTTCGAAATCTAAGTCA 59.582 40.000 0.00 1.18 0.00 3.41
3108 3206 5.744819 GGAGTAGCTTCGAAATCTAAGTCAC 59.255 44.000 0.00 0.00 0.00 3.67
3109 3207 6.404954 GGAGTAGCTTCGAAATCTAAGTCACT 60.405 42.308 0.00 0.00 0.00 3.41
3110 3208 6.557110 AGTAGCTTCGAAATCTAAGTCACTC 58.443 40.000 0.00 0.00 0.00 3.51
3111 3209 5.652994 AGCTTCGAAATCTAAGTCACTCT 57.347 39.130 0.00 0.00 0.00 3.24
3116 3214 8.709646 GCTTCGAAATCTAAGTCACTCTTTTTA 58.290 33.333 0.00 0.00 37.56 1.52
3137 3235 1.525077 AAACAACTCCCGCGCTTGA 60.525 52.632 12.64 4.58 0.00 3.02
3146 3244 2.614057 CTCCCGCGCTTGATTAGAAATT 59.386 45.455 5.56 0.00 0.00 1.82
3150 3248 4.318831 CCCGCGCTTGATTAGAAATTCTAC 60.319 45.833 5.56 0.00 0.00 2.59
3151 3249 4.508124 CCGCGCTTGATTAGAAATTCTACT 59.492 41.667 5.56 0.00 0.00 2.57
3152 3250 5.427082 CGCGCTTGATTAGAAATTCTACTG 58.573 41.667 5.56 0.00 0.00 2.74
3174 3272 2.233305 ACAGATGAGGTACCGGAAGT 57.767 50.000 9.46 0.00 0.00 3.01
3175 3273 2.100989 ACAGATGAGGTACCGGAAGTC 58.899 52.381 9.46 0.00 0.00 3.01
3176 3274 1.409427 CAGATGAGGTACCGGAAGTCC 59.591 57.143 9.46 4.55 0.00 3.85
3177 3275 0.751452 GATGAGGTACCGGAAGTCCC 59.249 60.000 9.46 0.00 0.00 4.46
3178 3276 0.042131 ATGAGGTACCGGAAGTCCCA 59.958 55.000 9.46 5.67 34.14 4.37
3179 3277 0.178926 TGAGGTACCGGAAGTCCCAA 60.179 55.000 9.46 0.00 34.14 4.12
3180 3278 1.201424 GAGGTACCGGAAGTCCCAAT 58.799 55.000 9.46 0.00 34.14 3.16
3181 3279 0.909623 AGGTACCGGAAGTCCCAATG 59.090 55.000 9.46 0.00 34.14 2.82
3182 3280 0.107361 GGTACCGGAAGTCCCAATGG 60.107 60.000 9.46 0.00 34.14 3.16
3183 3281 0.906775 GTACCGGAAGTCCCAATGGA 59.093 55.000 9.46 0.00 38.75 3.41
3184 3282 1.279846 GTACCGGAAGTCCCAATGGAA 59.720 52.381 9.46 0.00 44.07 3.53
3185 3283 0.328258 ACCGGAAGTCCCAATGGAAG 59.672 55.000 9.46 0.00 44.07 3.46
3186 3284 0.328258 CCGGAAGTCCCAATGGAAGT 59.672 55.000 0.00 0.00 44.07 3.01
3187 3285 1.271926 CCGGAAGTCCCAATGGAAGTT 60.272 52.381 0.00 0.00 44.07 2.66
3188 3286 2.084546 CGGAAGTCCCAATGGAAGTTC 58.915 52.381 0.00 0.00 44.07 3.01
3189 3287 2.447443 GGAAGTCCCAATGGAAGTTCC 58.553 52.381 9.42 9.42 44.07 3.62
3190 3288 2.225017 GGAAGTCCCAATGGAAGTTCCA 60.225 50.000 26.54 26.54 46.46 3.53
3191 3289 3.753846 GGAAGTCCCAATGGAAGTTCCAA 60.754 47.826 27.93 8.94 46.46 3.53
3192 3290 5.826550 GGAAGTCCCAATGGAAGTTCCAAC 61.827 50.000 27.93 20.02 46.46 3.77
3193 3291 7.976007 GGAAGTCCCAATGGAAGTTCCAACT 62.976 48.000 27.93 21.82 46.46 3.16
3194 3292 8.665870 GGAAGTCCCAATGGAAGTTCCAACTA 62.666 46.154 27.93 9.77 46.46 2.24
3201 3299 4.367039 TGGAAGTTCCAACTAAAGAGGG 57.633 45.455 22.59 0.00 45.00 4.30
3202 3300 3.082548 GGAAGTTCCAACTAAAGAGGGC 58.917 50.000 17.44 0.00 38.57 5.19
3203 3301 3.497942 GGAAGTTCCAACTAAAGAGGGCA 60.498 47.826 17.44 0.00 38.57 5.36
3204 3302 3.876309 AGTTCCAACTAAAGAGGGCAA 57.124 42.857 0.00 0.00 37.52 4.52
3205 3303 3.487372 AGTTCCAACTAAAGAGGGCAAC 58.513 45.455 0.00 0.00 37.52 4.17
3220 3318 3.518634 GGCAACCTCTTCAAAACAACA 57.481 42.857 0.00 0.00 0.00 3.33
3221 3319 3.855858 GGCAACCTCTTCAAAACAACAA 58.144 40.909 0.00 0.00 0.00 2.83
3222 3320 4.249661 GGCAACCTCTTCAAAACAACAAA 58.750 39.130 0.00 0.00 0.00 2.83
3223 3321 4.875536 GGCAACCTCTTCAAAACAACAAAT 59.124 37.500 0.00 0.00 0.00 2.32
3224 3322 6.045955 GGCAACCTCTTCAAAACAACAAATA 58.954 36.000 0.00 0.00 0.00 1.40
3225 3323 6.019075 GGCAACCTCTTCAAAACAACAAATAC 60.019 38.462 0.00 0.00 0.00 1.89
3226 3324 6.756542 GCAACCTCTTCAAAACAACAAATACT 59.243 34.615 0.00 0.00 0.00 2.12
3227 3325 7.043391 GCAACCTCTTCAAAACAACAAATACTC 60.043 37.037 0.00 0.00 0.00 2.59
3228 3326 7.039313 ACCTCTTCAAAACAACAAATACTCC 57.961 36.000 0.00 0.00 0.00 3.85
3229 3327 6.040504 ACCTCTTCAAAACAACAAATACTCCC 59.959 38.462 0.00 0.00 0.00 4.30
3230 3328 6.265422 CCTCTTCAAAACAACAAATACTCCCT 59.735 38.462 0.00 0.00 0.00 4.20
3231 3329 7.201911 CCTCTTCAAAACAACAAATACTCCCTT 60.202 37.037 0.00 0.00 0.00 3.95
3232 3330 7.712797 TCTTCAAAACAACAAATACTCCCTTC 58.287 34.615 0.00 0.00 0.00 3.46
3233 3331 6.067263 TCAAAACAACAAATACTCCCTTCG 57.933 37.500 0.00 0.00 0.00 3.79
3234 3332 5.591067 TCAAAACAACAAATACTCCCTTCGT 59.409 36.000 0.00 0.00 0.00 3.85
3235 3333 6.095720 TCAAAACAACAAATACTCCCTTCGTT 59.904 34.615 0.00 0.00 0.00 3.85
3236 3334 5.684550 AACAACAAATACTCCCTTCGTTC 57.315 39.130 0.00 0.00 0.00 3.95
3237 3335 4.070009 ACAACAAATACTCCCTTCGTTCC 58.930 43.478 0.00 0.00 0.00 3.62
3238 3336 4.069304 CAACAAATACTCCCTTCGTTCCA 58.931 43.478 0.00 0.00 0.00 3.53
3239 3337 4.360951 ACAAATACTCCCTTCGTTCCAA 57.639 40.909 0.00 0.00 0.00 3.53
3240 3338 4.721132 ACAAATACTCCCTTCGTTCCAAA 58.279 39.130 0.00 0.00 0.00 3.28
3241 3339 5.134661 ACAAATACTCCCTTCGTTCCAAAA 58.865 37.500 0.00 0.00 0.00 2.44
3242 3340 5.773176 ACAAATACTCCCTTCGTTCCAAAAT 59.227 36.000 0.00 0.00 0.00 1.82
3243 3341 6.943718 ACAAATACTCCCTTCGTTCCAAAATA 59.056 34.615 0.00 0.00 0.00 1.40
3244 3342 7.449086 ACAAATACTCCCTTCGTTCCAAAATAA 59.551 33.333 0.00 0.00 0.00 1.40
3245 3343 7.625828 AATACTCCCTTCGTTCCAAAATAAG 57.374 36.000 0.00 0.00 0.00 1.73
3246 3344 4.981812 ACTCCCTTCGTTCCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
3247 3345 4.760204 ACTCCCTTCGTTCCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
3248 3346 4.721132 TCCCTTCGTTCCAAAATAAGTGT 58.279 39.130 0.00 0.00 0.00 3.55
3249 3347 4.758165 TCCCTTCGTTCCAAAATAAGTGTC 59.242 41.667 0.00 0.00 0.00 3.67
3250 3348 4.760204 CCCTTCGTTCCAAAATAAGTGTCT 59.240 41.667 0.00 0.00 0.00 3.41
3251 3349 5.106673 CCCTTCGTTCCAAAATAAGTGTCTC 60.107 44.000 0.00 0.00 0.00 3.36
3252 3350 5.468746 CCTTCGTTCCAAAATAAGTGTCTCA 59.531 40.000 0.00 0.00 0.00 3.27
3253 3351 6.017440 CCTTCGTTCCAAAATAAGTGTCTCAA 60.017 38.462 0.00 0.00 0.00 3.02
3254 3352 6.295039 TCGTTCCAAAATAAGTGTCTCAAC 57.705 37.500 0.00 0.00 0.00 3.18
3255 3353 6.053005 TCGTTCCAAAATAAGTGTCTCAACT 58.947 36.000 0.00 0.00 0.00 3.16
3256 3354 6.540914 TCGTTCCAAAATAAGTGTCTCAACTT 59.459 34.615 0.00 0.00 42.89 2.66
3257 3355 7.066525 TCGTTCCAAAATAAGTGTCTCAACTTT 59.933 33.333 0.00 0.00 40.77 2.66
3258 3356 7.165812 CGTTCCAAAATAAGTGTCTCAACTTTG 59.834 37.037 0.00 0.00 40.77 2.77
3259 3357 7.639113 TCCAAAATAAGTGTCTCAACTTTGT 57.361 32.000 0.00 0.00 40.77 2.83
3260 3358 8.740123 TCCAAAATAAGTGTCTCAACTTTGTA 57.260 30.769 0.00 0.00 40.77 2.41
3261 3359 8.617809 TCCAAAATAAGTGTCTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
3262 3360 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3265 3363 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
3266 3364 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
3267 3365 6.163135 AGTGTCTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
3268 3366 6.217294 AGTGTCTCAACTTTGTACTAGCTTC 58.783 40.000 0.00 0.00 0.00 3.86
3269 3367 5.983720 GTGTCTCAACTTTGTACTAGCTTCA 59.016 40.000 0.00 0.00 0.00 3.02
3270 3368 6.479001 GTGTCTCAACTTTGTACTAGCTTCAA 59.521 38.462 0.00 0.00 0.00 2.69
3271 3369 7.171678 GTGTCTCAACTTTGTACTAGCTTCAAT 59.828 37.037 0.00 0.00 0.00 2.57
3272 3370 8.364894 TGTCTCAACTTTGTACTAGCTTCAATA 58.635 33.333 0.00 0.00 0.00 1.90
3273 3371 8.648968 GTCTCAACTTTGTACTAGCTTCAATAC 58.351 37.037 0.00 0.00 0.00 1.89
3274 3372 8.364894 TCTCAACTTTGTACTAGCTTCAATACA 58.635 33.333 0.00 0.00 0.00 2.29
3275 3373 8.896320 TCAACTTTGTACTAGCTTCAATACAA 57.104 30.769 0.00 0.00 36.11 2.41
3276 3374 9.332502 TCAACTTTGTACTAGCTTCAATACAAA 57.667 29.630 16.84 16.84 42.36 2.83
3281 3379 8.671384 TTGTACTAGCTTCAATACAAAGTTGT 57.329 30.769 0.00 1.75 44.86 3.32
3282 3380 9.767228 TTGTACTAGCTTCAATACAAAGTTGTA 57.233 29.630 6.37 6.37 46.55 2.41
3283 3381 9.199982 TGTACTAGCTTCAATACAAAGTTGTAC 57.800 33.333 6.05 0.00 45.47 2.90
3284 3382 9.420551 GTACTAGCTTCAATACAAAGTTGTACT 57.579 33.333 6.05 1.51 45.47 2.73
3286 3384 9.991906 ACTAGCTTCAATACAAAGTTGTACTAA 57.008 29.630 6.05 1.57 45.47 2.24
3288 3386 8.324163 AGCTTCAATACAAAGTTGTACTAAGG 57.676 34.615 6.05 0.12 45.47 2.69
3289 3387 7.937394 AGCTTCAATACAAAGTTGTACTAAGGT 59.063 33.333 6.05 11.51 45.47 3.50
3290 3388 8.228464 GCTTCAATACAAAGTTGTACTAAGGTC 58.772 37.037 6.05 0.00 45.47 3.85
3291 3389 9.268268 CTTCAATACAAAGTTGTACTAAGGTCA 57.732 33.333 6.05 0.00 45.47 4.02
3292 3390 9.616156 TTCAATACAAAGTTGTACTAAGGTCAA 57.384 29.630 6.05 0.00 45.47 3.18
3293 3391 9.268268 TCAATACAAAGTTGTACTAAGGTCAAG 57.732 33.333 6.05 0.00 45.47 3.02
3294 3392 9.268268 CAATACAAAGTTGTACTAAGGTCAAGA 57.732 33.333 6.05 0.00 45.47 3.02
3295 3393 8.828688 ATACAAAGTTGTACTAAGGTCAAGAC 57.171 34.615 6.05 0.00 45.47 3.01
3296 3394 6.646267 ACAAAGTTGTACTAAGGTCAAGACA 58.354 36.000 2.29 0.00 40.16 3.41
3297 3395 6.537660 ACAAAGTTGTACTAAGGTCAAGACAC 59.462 38.462 2.29 0.00 40.16 3.67
3298 3396 6.481434 AAGTTGTACTAAGGTCAAGACACT 57.519 37.500 2.29 0.00 0.00 3.55
3299 3397 6.481434 AGTTGTACTAAGGTCAAGACACTT 57.519 37.500 2.29 5.99 0.00 3.16
3300 3398 7.592885 AGTTGTACTAAGGTCAAGACACTTA 57.407 36.000 2.29 6.73 0.00 2.24
3301 3399 8.191534 AGTTGTACTAAGGTCAAGACACTTAT 57.808 34.615 2.29 2.45 0.00 1.73
3302 3400 8.648693 AGTTGTACTAAGGTCAAGACACTTATT 58.351 33.333 2.29 5.06 0.00 1.40
3303 3401 9.269453 GTTGTACTAAGGTCAAGACACTTATTT 57.731 33.333 2.29 2.03 0.00 1.40
3304 3402 9.841295 TTGTACTAAGGTCAAGACACTTATTTT 57.159 29.630 2.29 0.15 0.00 1.82
3308 3406 9.841295 ACTAAGGTCAAGACACTTATTTTACAA 57.159 29.630 2.29 0.00 0.00 2.41
3311 3409 8.747538 AGGTCAAGACACTTATTTTACAAAGT 57.252 30.769 2.29 0.00 36.38 2.66
3312 3410 9.185680 AGGTCAAGACACTTATTTTACAAAGTT 57.814 29.630 2.29 0.00 33.72 2.66
3313 3411 9.233232 GGTCAAGACACTTATTTTACAAAGTTG 57.767 33.333 2.29 0.00 33.72 3.16
3314 3412 9.783256 GTCAAGACACTTATTTTACAAAGTTGT 57.217 29.630 1.75 1.75 44.86 3.32
3331 3429 9.662947 ACAAAGTTGTACTAAGTTAAGACACTT 57.337 29.630 0.00 0.00 40.16 3.16
3344 3442 9.832445 AAGTTAAGACACTTATTTTGAGACAGA 57.168 29.630 0.00 0.00 35.10 3.41
3345 3443 9.482627 AGTTAAGACACTTATTTTGAGACAGAG 57.517 33.333 0.00 0.00 0.00 3.35
3346 3444 8.713271 GTTAAGACACTTATTTTGAGACAGAGG 58.287 37.037 0.00 0.00 0.00 3.69
3347 3445 5.241662 AGACACTTATTTTGAGACAGAGGC 58.758 41.667 0.00 0.00 0.00 4.70
3348 3446 3.997021 ACACTTATTTTGAGACAGAGGCG 59.003 43.478 0.00 0.00 0.00 5.52
3349 3447 3.997021 CACTTATTTTGAGACAGAGGCGT 59.003 43.478 0.00 0.00 0.00 5.68
3350 3448 5.168569 CACTTATTTTGAGACAGAGGCGTA 58.831 41.667 0.00 0.00 0.00 4.42
3351 3449 5.062308 CACTTATTTTGAGACAGAGGCGTAC 59.938 44.000 0.00 0.00 0.00 3.67
3352 3450 3.678056 ATTTTGAGACAGAGGCGTACA 57.322 42.857 0.00 0.00 0.00 2.90
3363 3461 4.201881 ACAGAGGCGTACAAAAGAACAAAC 60.202 41.667 0.00 0.00 0.00 2.93
3366 3464 4.196971 AGGCGTACAAAAGAACAAACTCT 58.803 39.130 0.00 0.00 0.00 3.24
3386 3484 7.391148 ACTCTAATACACATTCCGCAAAATT 57.609 32.000 0.00 0.00 0.00 1.82
3398 3496 3.504520 TCCGCAAAATTTAGGAGGTTGTC 59.495 43.478 10.79 0.00 0.00 3.18
3399 3497 3.254657 CCGCAAAATTTAGGAGGTTGTCA 59.745 43.478 0.00 0.00 0.00 3.58
3404 3529 3.739401 ATTTAGGAGGTTGTCAAGGGG 57.261 47.619 0.00 0.00 0.00 4.79
3406 3531 0.474854 TAGGAGGTTGTCAAGGGGCA 60.475 55.000 0.00 0.00 0.00 5.36
3424 3549 1.473965 GCAAGAGGCATCGGATGAGAA 60.474 52.381 21.69 0.00 43.97 2.87
3425 3550 2.481854 CAAGAGGCATCGGATGAGAAG 58.518 52.381 21.69 2.23 0.00 2.85
3426 3551 0.392336 AGAGGCATCGGATGAGAAGC 59.608 55.000 21.69 5.47 34.47 3.86
3427 3552 0.943359 GAGGCATCGGATGAGAAGCG 60.943 60.000 21.69 0.00 35.88 4.68
3428 3553 1.227380 GGCATCGGATGAGAAGCGT 60.227 57.895 21.69 0.00 35.88 5.07
3431 3556 1.932604 GCATCGGATGAGAAGCGTAGG 60.933 57.143 21.69 0.00 0.00 3.18
3433 3558 1.107538 TCGGATGAGAAGCGTAGGGG 61.108 60.000 0.00 0.00 0.00 4.79
3445 3588 1.388065 CGTAGGGGAGGAGAGCACTG 61.388 65.000 0.00 0.00 0.00 3.66
3446 3589 1.045911 GTAGGGGAGGAGAGCACTGG 61.046 65.000 0.00 0.00 0.00 4.00
3447 3590 2.243774 TAGGGGAGGAGAGCACTGGG 62.244 65.000 0.00 0.00 0.00 4.45
3448 3591 2.039624 GGGAGGAGAGCACTGGGA 59.960 66.667 0.00 0.00 0.00 4.37
3449 3592 2.363172 GGGAGGAGAGCACTGGGAC 61.363 68.421 0.00 0.00 0.00 4.46
3450 3593 2.716017 GGAGGAGAGCACTGGGACG 61.716 68.421 0.00 0.00 0.00 4.79
3451 3594 1.679305 GAGGAGAGCACTGGGACGA 60.679 63.158 0.00 0.00 0.00 4.20
3452 3595 1.662438 GAGGAGAGCACTGGGACGAG 61.662 65.000 0.00 0.00 0.00 4.18
3453 3596 1.679305 GGAGAGCACTGGGACGAGA 60.679 63.158 0.00 0.00 0.00 4.04
3454 3597 1.040339 GGAGAGCACTGGGACGAGAT 61.040 60.000 0.00 0.00 0.00 2.75
3455 3598 0.383949 GAGAGCACTGGGACGAGATC 59.616 60.000 0.00 0.00 0.00 2.75
3469 3612 5.991328 GACGAGATCCATATTTTTGAGCA 57.009 39.130 0.00 0.00 0.00 4.26
3470 3613 5.741388 ACGAGATCCATATTTTTGAGCAC 57.259 39.130 0.00 0.00 0.00 4.40
3471 3614 5.431765 ACGAGATCCATATTTTTGAGCACT 58.568 37.500 0.00 0.00 0.00 4.40
3472 3615 5.295292 ACGAGATCCATATTTTTGAGCACTG 59.705 40.000 0.00 0.00 0.00 3.66
3478 3621 4.706476 CCATATTTTTGAGCACTGGGAAGA 59.294 41.667 0.00 0.00 0.00 2.87
3515 3662 9.770097 TTTAGATTGCAACATTCATTGGTTTTA 57.230 25.926 0.00 0.00 0.00 1.52
3517 3664 8.483307 AGATTGCAACATTCATTGGTTTTATC 57.517 30.769 0.00 0.00 0.00 1.75
3524 3671 9.009327 CAACATTCATTGGTTTTATCGTATCAC 57.991 33.333 0.00 0.00 0.00 3.06
3526 3673 6.971527 TTCATTGGTTTTATCGTATCACGT 57.028 33.333 0.00 0.00 43.14 4.49
3546 3693 3.483922 CGTCAGAGTCGATTGTTCTATGC 59.516 47.826 0.00 0.00 0.00 3.14
3547 3694 3.483922 GTCAGAGTCGATTGTTCTATGCG 59.516 47.826 0.00 0.00 0.00 4.73
3549 3696 1.523095 GAGTCGATTGTTCTATGCGCC 59.477 52.381 4.18 0.00 0.00 6.53
3552 3699 0.041839 CGATTGTTCTATGCGCCAGC 60.042 55.000 4.18 0.00 45.41 4.85
3573 3720 1.978542 GCAGATTCTTGCTTGCACAG 58.021 50.000 0.00 0.00 40.89 3.66
3574 3721 1.268899 GCAGATTCTTGCTTGCACAGT 59.731 47.619 0.00 0.00 40.89 3.55
3577 3724 4.720090 CAGATTCTTGCTTGCACAGTAAG 58.280 43.478 15.43 15.43 44.52 2.34
3578 3725 4.214971 CAGATTCTTGCTTGCACAGTAAGT 59.785 41.667 18.57 7.56 43.79 2.24
3591 3738 4.724279 ACAGTAAGTGAACAAGGGGATT 57.276 40.909 0.00 0.00 0.00 3.01
3592 3739 5.836024 ACAGTAAGTGAACAAGGGGATTA 57.164 39.130 0.00 0.00 0.00 1.75
3593 3740 5.805728 ACAGTAAGTGAACAAGGGGATTAG 58.194 41.667 0.00 0.00 0.00 1.73
3594 3741 5.546499 ACAGTAAGTGAACAAGGGGATTAGA 59.454 40.000 0.00 0.00 0.00 2.10
3595 3742 6.215636 ACAGTAAGTGAACAAGGGGATTAGAT 59.784 38.462 0.00 0.00 0.00 1.98
3598 3746 7.829706 AGTAAGTGAACAAGGGGATTAGATTTC 59.170 37.037 0.00 0.00 0.00 2.17
3618 3766 1.610038 CATGCAAGTGCTCAACCTCAA 59.390 47.619 4.69 0.00 42.66 3.02
3627 3775 5.865085 AGTGCTCAACCTCAAGTAAATGTA 58.135 37.500 0.00 0.00 0.00 2.29
3631 3780 8.082242 GTGCTCAACCTCAAGTAAATGTAAAAT 58.918 33.333 0.00 0.00 0.00 1.82
3690 3839 8.397906 ACGGATATGAACATTGTTCATTTGTAG 58.602 33.333 36.73 27.40 39.59 2.74
3711 3860 8.301730 TGTAGTAAGAAATAGAAACAACACCG 57.698 34.615 0.00 0.00 0.00 4.94
3719 3868 0.949397 GAAACAACACCGACCCCTTC 59.051 55.000 0.00 0.00 0.00 3.46
3733 3882 4.627255 CGACCCCTTCCTCTAGTACTGTAA 60.627 50.000 5.39 0.00 0.00 2.41
3734 3883 4.608269 ACCCCTTCCTCTAGTACTGTAAC 58.392 47.826 5.39 0.00 0.00 2.50
3745 3894 8.762426 CCTCTAGTACTGTAACTTGTCAAAAAC 58.238 37.037 5.39 0.00 0.00 2.43
3746 3895 8.343974 TCTAGTACTGTAACTTGTCAAAAACG 57.656 34.615 5.39 0.00 0.00 3.60
3748 3897 5.876460 AGTACTGTAACTTGTCAAAAACGGT 59.124 36.000 0.00 9.69 0.00 4.83
3749 3898 4.976987 ACTGTAACTTGTCAAAAACGGTG 58.023 39.130 5.65 0.00 0.00 4.94
3766 3917 2.482721 CGGTGTTTACATCAAGGGTCAC 59.517 50.000 0.00 0.00 0.00 3.67
3795 3946 2.552599 TTGACCACGCTGTTCCATTA 57.447 45.000 0.00 0.00 0.00 1.90
3796 3947 1.803334 TGACCACGCTGTTCCATTAC 58.197 50.000 0.00 0.00 0.00 1.89
3821 3974 8.877195 ACCGGTTTACCTATAAGATGTATGAAT 58.123 33.333 0.00 0.00 0.00 2.57
3833 3986 2.989909 TGTATGAATGGACAGGCACAG 58.010 47.619 0.00 0.00 0.00 3.66
3846 3999 0.234884 GGCACAGAAAACGTCCTTCG 59.765 55.000 0.00 0.00 46.00 3.79
3847 4000 1.214367 GCACAGAAAACGTCCTTCGA 58.786 50.000 0.00 0.00 42.86 3.71
3848 4001 1.192534 GCACAGAAAACGTCCTTCGAG 59.807 52.381 0.00 0.00 42.86 4.04
3850 4003 0.790814 CAGAAAACGTCCTTCGAGGC 59.209 55.000 0.00 0.00 42.86 4.70
3876 4030 1.222936 GCTGGGCAGTGTCTATGCT 59.777 57.895 0.00 0.00 43.35 3.79
3938 4092 4.023291 TGGAAAGCCATGGAATAAGTTCC 58.977 43.478 18.40 16.69 45.85 3.62
3976 4131 8.540507 AAGTTCTATCCAGATTCACTAGCTAA 57.459 34.615 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.579873 CCTGCTTATCATGGGTGGAAG 58.420 52.381 0.00 0.00 0.00 3.46
73 74 1.270550 GACAACAGATTGCTTGGGGTG 59.729 52.381 0.00 0.00 39.66 4.61
74 75 1.620822 GACAACAGATTGCTTGGGGT 58.379 50.000 0.00 0.00 39.66 4.95
75 76 0.523072 CGACAACAGATTGCTTGGGG 59.477 55.000 0.00 0.00 39.66 4.96
109 110 7.861372 ACTAGAACGACCGATGATAAAATACAG 59.139 37.037 0.00 0.00 0.00 2.74
124 125 6.183360 CCAATTTTGGTGATACTAGAACGACC 60.183 42.308 0.00 0.00 43.43 4.79
149 150 3.560068 CCGTGGCAAGGACATAATAGAAC 59.440 47.826 14.80 0.00 0.00 3.01
157 158 1.247567 CTTTTCCGTGGCAAGGACAT 58.752 50.000 22.08 0.00 37.53 3.06
162 163 0.597377 GCAACCTTTTCCGTGGCAAG 60.597 55.000 0.00 0.00 30.01 4.01
173 174 3.803368 GCAAACTAGCAATGGCAACCTTT 60.803 43.478 0.00 0.00 44.61 3.11
174 175 2.289010 GCAAACTAGCAATGGCAACCTT 60.289 45.455 0.00 0.00 44.61 3.50
176 177 1.672737 GGCAAACTAGCAATGGCAACC 60.673 52.381 10.48 0.00 44.61 3.77
213 214 1.732941 GACACAGGTGACACACAACA 58.267 50.000 8.08 0.00 38.92 3.33
219 220 1.641677 GCAACGACACAGGTGACAC 59.358 57.895 6.40 0.00 0.00 3.67
235 236 0.321210 ATCGAACATTGTCCGTGGCA 60.321 50.000 0.00 0.00 0.00 4.92
236 237 0.373716 GATCGAACATTGTCCGTGGC 59.626 55.000 0.00 0.00 0.00 5.01
237 238 1.006832 GGATCGAACATTGTCCGTGG 58.993 55.000 0.00 0.00 0.00 4.94
238 239 1.927174 GAGGATCGAACATTGTCCGTG 59.073 52.381 0.00 0.00 35.89 4.94
239 240 1.548719 TGAGGATCGAACATTGTCCGT 59.451 47.619 0.00 0.00 38.61 4.69
240 241 2.293677 TGAGGATCGAACATTGTCCG 57.706 50.000 0.00 0.00 38.61 4.79
241 242 2.352960 GCTTGAGGATCGAACATTGTCC 59.647 50.000 0.00 0.00 38.61 4.02
242 243 2.352960 GGCTTGAGGATCGAACATTGTC 59.647 50.000 0.00 0.00 38.61 3.18
243 244 2.290260 TGGCTTGAGGATCGAACATTGT 60.290 45.455 0.00 0.00 38.61 2.71
244 245 2.358957 TGGCTTGAGGATCGAACATTG 58.641 47.619 0.00 0.00 38.61 2.82
245 246 2.787473 TGGCTTGAGGATCGAACATT 57.213 45.000 0.00 0.00 38.61 2.71
246 247 2.237143 TCTTGGCTTGAGGATCGAACAT 59.763 45.455 0.00 0.00 38.61 2.71
247 248 1.623311 TCTTGGCTTGAGGATCGAACA 59.377 47.619 0.00 0.00 38.61 3.18
248 249 2.275318 CTCTTGGCTTGAGGATCGAAC 58.725 52.381 0.00 0.00 38.61 3.95
249 250 1.902508 ACTCTTGGCTTGAGGATCGAA 59.097 47.619 10.90 0.00 38.61 3.71
250 251 1.205655 CACTCTTGGCTTGAGGATCGA 59.794 52.381 10.90 0.00 38.61 3.59
251 252 1.649664 CACTCTTGGCTTGAGGATCG 58.350 55.000 10.90 0.00 38.61 3.69
252 253 2.035530 CCACTCTTGGCTTGAGGATC 57.964 55.000 10.90 0.00 35.56 3.36
263 264 0.236711 CGCTTGAACTGCCACTCTTG 59.763 55.000 0.00 0.00 0.00 3.02
264 265 1.510480 GCGCTTGAACTGCCACTCTT 61.510 55.000 0.00 0.00 0.00 2.85
265 266 1.963338 GCGCTTGAACTGCCACTCT 60.963 57.895 0.00 0.00 0.00 3.24
266 267 2.558313 GCGCTTGAACTGCCACTC 59.442 61.111 0.00 0.00 0.00 3.51
286 287 3.448686 CGTGCAAGGTAGATAGACAAGG 58.551 50.000 0.00 0.00 0.00 3.61
318 319 2.027605 CGGCTGGCACGTCGATAT 59.972 61.111 0.00 0.00 32.52 1.63
341 342 0.929824 CTCGCAACTTTTGTGCACGG 60.930 55.000 13.13 4.94 40.84 4.94
342 343 0.248054 ACTCGCAACTTTTGTGCACG 60.248 50.000 13.13 0.00 40.84 5.34
358 359 7.681543 GCGCCCAGATATTATTAGTACCTACTC 60.682 44.444 0.00 0.00 37.73 2.59
359 360 6.096564 GCGCCCAGATATTATTAGTACCTACT 59.903 42.308 0.00 0.00 40.24 2.57
367 368 3.187700 GTCGGCGCCCAGATATTATTAG 58.812 50.000 23.46 1.13 0.00 1.73
369 370 1.338769 GGTCGGCGCCCAGATATTATT 60.339 52.381 23.46 0.00 0.00 1.40
373 374 3.991051 CGGTCGGCGCCCAGATAT 61.991 66.667 23.46 0.00 0.00 1.63
467 468 4.424566 TAGCCAACGGGTCGACGC 62.425 66.667 21.72 21.72 37.37 5.19
468 469 2.202570 CTAGCCAACGGGTCGACG 60.203 66.667 9.92 1.01 40.31 5.12
469 470 2.183555 CCTAGCCAACGGGTCGAC 59.816 66.667 7.13 7.13 34.28 4.20
470 471 3.766691 GCCTAGCCAACGGGTCGA 61.767 66.667 0.00 0.00 34.28 4.20
471 472 4.077184 TGCCTAGCCAACGGGTCG 62.077 66.667 0.00 0.00 34.28 4.79
472 473 2.125106 CTGCCTAGCCAACGGGTC 60.125 66.667 0.00 0.00 34.28 4.46
473 474 4.410400 GCTGCCTAGCCAACGGGT 62.410 66.667 0.00 0.00 44.33 5.28
482 483 1.601171 AGCAACCTCAGCTGCCTAG 59.399 57.895 9.47 0.70 41.61 3.02
483 484 3.811702 AGCAACCTCAGCTGCCTA 58.188 55.556 9.47 0.00 41.61 3.93
488 489 2.033757 CTGGCAGCAACCTCAGCT 59.966 61.111 0.00 0.00 44.62 4.24
489 490 3.745803 GCTGGCAGCAACCTCAGC 61.746 66.667 33.33 4.00 44.34 4.26
490 491 3.060615 GGCTGGCAGCAACCTCAG 61.061 66.667 37.49 0.50 44.75 3.35
491 492 4.666253 GGGCTGGCAGCAACCTCA 62.666 66.667 37.49 0.00 44.75 3.86
492 493 3.951769 ATGGGCTGGCAGCAACCTC 62.952 63.158 37.49 21.25 44.75 3.85
493 494 3.951769 GATGGGCTGGCAGCAACCT 62.952 63.158 37.49 23.22 44.75 3.50
494 495 3.455469 GATGGGCTGGCAGCAACC 61.455 66.667 37.49 29.89 44.75 3.77
495 496 2.362120 AGATGGGCTGGCAGCAAC 60.362 61.111 37.49 29.14 44.75 4.17
496 497 2.361992 CAGATGGGCTGGCAGCAA 60.362 61.111 37.49 26.37 44.75 3.91
497 498 3.332385 TCAGATGGGCTGGCAGCA 61.332 61.111 37.49 21.31 44.75 4.41
498 499 2.516460 CTCAGATGGGCTGGCAGC 60.516 66.667 30.93 30.93 44.98 5.25
499 500 0.747283 GAACTCAGATGGGCTGGCAG 60.747 60.000 10.94 10.94 44.98 4.85
500 501 1.300963 GAACTCAGATGGGCTGGCA 59.699 57.895 2.88 0.00 44.98 4.92
501 502 1.817099 CGAACTCAGATGGGCTGGC 60.817 63.158 0.00 0.00 44.98 4.85
502 503 0.179089 CTCGAACTCAGATGGGCTGG 60.179 60.000 0.00 0.00 44.98 4.85
503 504 0.534412 ACTCGAACTCAGATGGGCTG 59.466 55.000 0.00 0.00 46.31 4.85
504 505 0.820871 GACTCGAACTCAGATGGGCT 59.179 55.000 0.00 0.00 0.00 5.19
505 506 0.820871 AGACTCGAACTCAGATGGGC 59.179 55.000 0.00 0.00 0.00 5.36
506 507 1.064803 CGAGACTCGAACTCAGATGGG 59.935 57.143 20.25 0.00 43.74 4.00
507 508 2.010497 TCGAGACTCGAACTCAGATGG 58.990 52.381 24.71 0.00 46.90 3.51
519 520 8.421595 AAGAGAAACTTCACGAGTCGAGACTC 62.422 46.154 21.50 20.10 43.29 3.36
520 521 2.879646 AGAAACTTCACGAGTCGAGACT 59.120 45.455 21.50 5.31 45.84 3.24
521 522 3.058777 AGAGAAACTTCACGAGTCGAGAC 60.059 47.826 21.50 4.48 37.72 3.36
522 523 3.139850 AGAGAAACTTCACGAGTCGAGA 58.860 45.455 21.50 14.80 37.72 4.04
523 524 3.546002 AGAGAAACTTCACGAGTCGAG 57.454 47.619 21.50 12.22 37.72 4.04
524 525 3.984508 AAGAGAAACTTCACGAGTCGA 57.015 42.857 21.50 0.00 37.72 4.20
525 526 5.391449 TGATAAGAGAAACTTCACGAGTCG 58.609 41.667 11.85 11.85 37.72 4.18
526 527 7.639162 TTTGATAAGAGAAACTTCACGAGTC 57.361 36.000 0.00 0.00 37.72 3.36
527 528 8.433421 TTTTTGATAAGAGAAACTTCACGAGT 57.567 30.769 0.00 0.00 41.47 4.18
549 550 6.894339 AACCTAATCCTCGTTGACATTTTT 57.106 33.333 0.00 0.00 0.00 1.94
550 551 6.894339 AAACCTAATCCTCGTTGACATTTT 57.106 33.333 0.00 0.00 0.00 1.82
551 552 6.894339 AAAACCTAATCCTCGTTGACATTT 57.106 33.333 0.00 0.00 0.00 2.32
552 553 8.575649 AATAAAACCTAATCCTCGTTGACATT 57.424 30.769 0.00 0.00 0.00 2.71
553 554 8.575649 AAATAAAACCTAATCCTCGTTGACAT 57.424 30.769 0.00 0.00 0.00 3.06
554 555 7.989416 AAATAAAACCTAATCCTCGTTGACA 57.011 32.000 0.00 0.00 0.00 3.58
572 573 9.796120 CGCACCCTCTATTTCAAAATAAATAAA 57.204 29.630 0.00 0.00 32.41 1.40
573 574 7.918562 GCGCACCCTCTATTTCAAAATAAATAA 59.081 33.333 0.30 0.00 32.41 1.40
574 575 7.422399 GCGCACCCTCTATTTCAAAATAAATA 58.578 34.615 0.30 0.00 31.03 1.40
575 576 6.273071 GCGCACCCTCTATTTCAAAATAAAT 58.727 36.000 0.30 0.00 31.03 1.40
576 577 5.646606 GCGCACCCTCTATTTCAAAATAAA 58.353 37.500 0.30 0.00 31.03 1.40
577 578 4.201871 CGCGCACCCTCTATTTCAAAATAA 60.202 41.667 8.75 0.00 31.03 1.40
578 579 3.311322 CGCGCACCCTCTATTTCAAAATA 59.689 43.478 8.75 0.00 0.00 1.40
579 580 2.097466 CGCGCACCCTCTATTTCAAAAT 59.903 45.455 8.75 0.00 0.00 1.82
580 581 1.466950 CGCGCACCCTCTATTTCAAAA 59.533 47.619 8.75 0.00 0.00 2.44
581 582 1.083489 CGCGCACCCTCTATTTCAAA 58.917 50.000 8.75 0.00 0.00 2.69
582 583 0.742990 CCGCGCACCCTCTATTTCAA 60.743 55.000 8.75 0.00 0.00 2.69
583 584 1.153449 CCGCGCACCCTCTATTTCA 60.153 57.895 8.75 0.00 0.00 2.69
584 585 2.534903 GCCGCGCACCCTCTATTTC 61.535 63.158 8.75 0.00 0.00 2.17
585 586 2.513897 GCCGCGCACCCTCTATTT 60.514 61.111 8.75 0.00 0.00 1.40
586 587 4.547367 GGCCGCGCACCCTCTATT 62.547 66.667 8.75 0.00 0.00 1.73
609 610 0.779997 AGTTTCTGCATTGGGGAGGT 59.220 50.000 0.00 0.00 35.32 3.85
610 611 1.547372 CAAGTTTCTGCATTGGGGAGG 59.453 52.381 0.00 0.00 35.32 4.30
617 618 1.203052 CGCATCCCAAGTTTCTGCATT 59.797 47.619 0.00 0.00 33.13 3.56
633 635 2.124736 CCCCATTGGACGACGCAT 60.125 61.111 3.62 0.00 35.39 4.73
634 636 4.402528 CCCCCATTGGACGACGCA 62.403 66.667 3.62 0.00 35.39 5.24
651 653 3.314388 CTGGCGTGCTCTTTTCCGC 62.314 63.158 0.00 0.00 45.05 5.54
666 668 1.931172 CGGGTACTGAATAAACGCTGG 59.069 52.381 0.00 0.00 36.31 4.85
684 686 2.027192 CCCTGGATTGGTGGATATACGG 60.027 54.545 0.00 0.00 0.00 4.02
685 687 2.637872 ACCCTGGATTGGTGGATATACG 59.362 50.000 0.00 0.00 33.94 3.06
707 712 4.408821 GATGCCCTGTCCGCACCA 62.409 66.667 0.00 0.00 39.49 4.17
782 795 2.784547 TTGCTCCGATGGCAAGATG 58.215 52.632 0.00 0.00 43.50 2.90
789 802 1.133025 GATGTGGTTTTGCTCCGATGG 59.867 52.381 0.00 0.00 0.00 3.51
799 812 2.158827 GCTGGGTTTTGGATGTGGTTTT 60.159 45.455 0.00 0.00 0.00 2.43
828 847 1.143838 TGAACGGGATGATGCCTCG 59.856 57.895 0.42 0.00 0.00 4.63
829 848 0.179000 AGTGAACGGGATGATGCCTC 59.821 55.000 0.42 0.00 0.00 4.70
830 849 0.620556 AAGTGAACGGGATGATGCCT 59.379 50.000 0.42 0.00 0.00 4.75
831 850 1.017387 GAAGTGAACGGGATGATGCC 58.983 55.000 0.00 0.00 0.00 4.40
832 851 1.936547 GAGAAGTGAACGGGATGATGC 59.063 52.381 0.00 0.00 0.00 3.91
833 852 3.251479 TGAGAAGTGAACGGGATGATG 57.749 47.619 0.00 0.00 0.00 3.07
834 853 3.261897 ACTTGAGAAGTGAACGGGATGAT 59.738 43.478 0.00 0.00 41.01 2.45
835 854 2.632996 ACTTGAGAAGTGAACGGGATGA 59.367 45.455 0.00 0.00 41.01 2.92
842 861 4.387256 CGGATGAGAACTTGAGAAGTGAAC 59.613 45.833 0.00 0.00 41.91 3.18
949 968 1.523032 CCGGATCGGCTAACCAACC 60.523 63.158 0.00 0.00 41.17 3.77
960 982 2.125269 GTCACCCAACCCGGATCG 60.125 66.667 0.73 0.00 36.56 3.69
1194 1234 4.162320 TCAATGGAAACCAGAGCCTACTAG 59.838 45.833 0.00 0.00 36.75 2.57
1195 1235 4.101114 TCAATGGAAACCAGAGCCTACTA 58.899 43.478 0.00 0.00 36.75 1.82
1196 1236 2.912956 TCAATGGAAACCAGAGCCTACT 59.087 45.455 0.00 0.00 36.75 2.57
1240 1283 4.477975 GGAGAGGCACGTCGGTCG 62.478 72.222 0.00 0.00 46.00 4.79
1241 1284 4.131088 GGGAGAGGCACGTCGGTC 62.131 72.222 0.00 0.00 0.00 4.79
1242 1285 4.988716 TGGGAGAGGCACGTCGGT 62.989 66.667 0.00 0.00 0.00 4.69
1243 1286 3.019003 AATGGGAGAGGCACGTCGG 62.019 63.158 0.00 0.00 0.00 4.79
1251 1294 0.038744 ACCTGCAACAATGGGAGAGG 59.961 55.000 0.00 0.00 0.00 3.69
1344 1387 2.109126 GGCGACAGGGTGCAGATTC 61.109 63.158 0.00 0.00 0.00 2.52
1466 1509 1.779061 ATGAGGTGGCCGTGGAGTTT 61.779 55.000 0.00 0.00 0.00 2.66
1467 1510 2.185310 GATGAGGTGGCCGTGGAGTT 62.185 60.000 0.00 0.00 0.00 3.01
1468 1511 2.607750 ATGAGGTGGCCGTGGAGT 60.608 61.111 0.00 0.00 0.00 3.85
2056 2108 2.772691 CGACGGCAGGTAGACCTCC 61.773 68.421 0.00 3.00 46.65 4.30
2101 2153 3.578688 CCCTTTCTTGAAAATCTTGGCG 58.421 45.455 0.00 0.00 0.00 5.69
2108 2160 2.540383 GCCTCCCCCTTTCTTGAAAAT 58.460 47.619 0.00 0.00 0.00 1.82
2110 2162 0.251165 CGCCTCCCCCTTTCTTGAAA 60.251 55.000 0.00 0.00 0.00 2.69
2176 2228 4.626402 TCCCCGTCGTTCCACCCT 62.626 66.667 0.00 0.00 0.00 4.34
2583 2635 3.077556 CCGAGCCCTGCAGGTACT 61.078 66.667 30.63 26.07 43.88 2.73
2794 2846 1.227674 CCGCTGGGGCATACTCTTC 60.228 63.158 0.00 0.00 38.60 2.87
3001 3094 3.420893 TCACTTCCATTGGACATTGGAC 58.579 45.455 13.76 0.00 39.68 4.02
3002 3095 3.805066 TCACTTCCATTGGACATTGGA 57.195 42.857 4.45 10.89 38.62 3.53
3003 3096 4.870123 TTTCACTTCCATTGGACATTGG 57.130 40.909 4.45 6.85 34.14 3.16
3004 3097 6.282930 ACTTTTTCACTTCCATTGGACATTG 58.717 36.000 4.45 3.09 0.00 2.82
3005 3098 6.484364 ACTTTTTCACTTCCATTGGACATT 57.516 33.333 4.45 0.00 0.00 2.71
3006 3099 6.462909 GGAACTTTTTCACTTCCATTGGACAT 60.463 38.462 4.45 0.00 34.63 3.06
3007 3100 5.163457 GGAACTTTTTCACTTCCATTGGACA 60.163 40.000 4.45 0.00 34.63 4.02
3008 3101 5.163457 TGGAACTTTTTCACTTCCATTGGAC 60.163 40.000 4.45 0.00 38.83 4.02
3030 3123 6.096282 TGAAAAAGGTTGTCCTCTTTAGTTGG 59.904 38.462 0.00 0.00 44.35 3.77
3035 3128 7.324935 GGTTTTGAAAAAGGTTGTCCTCTTTA 58.675 34.615 0.00 0.00 44.35 1.85
3042 3135 2.280445 CGCGGTTTTGAAAAAGGTTGTC 59.720 45.455 0.00 0.00 0.00 3.18
3046 3139 1.104630 TCCGCGGTTTTGAAAAAGGT 58.895 45.000 27.15 0.00 0.00 3.50
3047 3140 2.432206 ATCCGCGGTTTTGAAAAAGG 57.568 45.000 27.15 0.00 0.00 3.11
3048 3141 2.914838 GCTATCCGCGGTTTTGAAAAAG 59.085 45.455 27.15 10.20 0.00 2.27
3049 3142 2.293677 TGCTATCCGCGGTTTTGAAAAA 59.706 40.909 27.15 1.58 43.27 1.94
3050 3143 1.880675 TGCTATCCGCGGTTTTGAAAA 59.119 42.857 27.15 2.48 43.27 2.29
3051 3144 1.198178 GTGCTATCCGCGGTTTTGAAA 59.802 47.619 27.15 3.40 43.27 2.69
3053 3146 1.022451 GGTGCTATCCGCGGTTTTGA 61.022 55.000 27.15 5.24 43.27 2.69
3055 3148 0.538118 TAGGTGCTATCCGCGGTTTT 59.462 50.000 27.15 13.93 43.27 2.43
3056 3149 0.179092 GTAGGTGCTATCCGCGGTTT 60.179 55.000 27.15 16.62 43.27 3.27
3058 3151 2.842256 CGTAGGTGCTATCCGCGGT 61.842 63.158 27.15 15.22 43.27 5.68
3075 3173 2.099263 TCGAAGCTACTCCAATCTTCCG 59.901 50.000 0.00 0.00 33.32 4.30
3101 3199 8.276252 AGTTGTTTGCTAAAAAGAGTGACTTA 57.724 30.769 0.00 0.00 37.93 2.24
3103 3201 6.183360 GGAGTTGTTTGCTAAAAAGAGTGACT 60.183 38.462 0.00 0.00 0.00 3.41
3104 3202 5.971792 GGAGTTGTTTGCTAAAAAGAGTGAC 59.028 40.000 0.00 0.00 0.00 3.67
3105 3203 5.067283 GGGAGTTGTTTGCTAAAAAGAGTGA 59.933 40.000 0.00 0.00 0.00 3.41
3106 3204 5.281727 GGGAGTTGTTTGCTAAAAAGAGTG 58.718 41.667 0.00 0.00 0.00 3.51
3107 3205 4.036380 CGGGAGTTGTTTGCTAAAAAGAGT 59.964 41.667 0.00 0.00 0.00 3.24
3108 3206 4.537015 CGGGAGTTGTTTGCTAAAAAGAG 58.463 43.478 0.00 0.00 0.00 2.85
3109 3207 3.243267 GCGGGAGTTGTTTGCTAAAAAGA 60.243 43.478 0.00 0.00 0.00 2.52
3110 3208 3.049912 GCGGGAGTTGTTTGCTAAAAAG 58.950 45.455 0.00 0.00 0.00 2.27
3111 3209 2.541999 CGCGGGAGTTGTTTGCTAAAAA 60.542 45.455 0.00 0.00 0.00 1.94
3116 3214 3.660111 GCGCGGGAGTTGTTTGCT 61.660 61.111 8.83 0.00 0.00 3.91
3159 3257 2.912020 GGGACTTCCGGTACCTCAT 58.088 57.895 10.90 0.00 45.48 2.90
3160 3258 4.447734 GGGACTTCCGGTACCTCA 57.552 61.111 10.90 0.00 45.48 3.86
3180 3278 3.497942 GCCCTCTTTAGTTGGAACTTCCA 60.498 47.826 6.39 6.39 46.61 3.53
3181 3279 3.082548 GCCCTCTTTAGTTGGAACTTCC 58.917 50.000 0.20 0.20 40.37 3.46
3182 3280 3.751518 TGCCCTCTTTAGTTGGAACTTC 58.248 45.455 0.00 0.00 40.37 3.01
3183 3281 3.876309 TGCCCTCTTTAGTTGGAACTT 57.124 42.857 0.00 0.00 40.37 2.66
3184 3282 3.487372 GTTGCCCTCTTTAGTTGGAACT 58.513 45.455 0.00 0.00 42.91 3.01
3185 3283 2.557056 GGTTGCCCTCTTTAGTTGGAAC 59.443 50.000 0.00 0.00 0.00 3.62
3186 3284 2.445525 AGGTTGCCCTCTTTAGTTGGAA 59.554 45.455 0.00 0.00 35.62 3.53
3187 3285 2.062636 AGGTTGCCCTCTTTAGTTGGA 58.937 47.619 0.00 0.00 35.62 3.53
3188 3286 2.586648 AGGTTGCCCTCTTTAGTTGG 57.413 50.000 0.00 0.00 35.62 3.77
3198 3296 2.430694 GTTGTTTTGAAGAGGTTGCCCT 59.569 45.455 0.00 0.00 46.66 5.19
3199 3297 2.167487 TGTTGTTTTGAAGAGGTTGCCC 59.833 45.455 0.00 0.00 0.00 5.36
3200 3298 3.518634 TGTTGTTTTGAAGAGGTTGCC 57.481 42.857 0.00 0.00 0.00 4.52
3201 3299 6.756542 AGTATTTGTTGTTTTGAAGAGGTTGC 59.243 34.615 0.00 0.00 0.00 4.17
3202 3300 7.435192 GGAGTATTTGTTGTTTTGAAGAGGTTG 59.565 37.037 0.00 0.00 0.00 3.77
3203 3301 7.417456 GGGAGTATTTGTTGTTTTGAAGAGGTT 60.417 37.037 0.00 0.00 0.00 3.50
3204 3302 6.040504 GGGAGTATTTGTTGTTTTGAAGAGGT 59.959 38.462 0.00 0.00 0.00 3.85
3205 3303 6.265422 AGGGAGTATTTGTTGTTTTGAAGAGG 59.735 38.462 0.00 0.00 0.00 3.69
3206 3304 7.277174 AGGGAGTATTTGTTGTTTTGAAGAG 57.723 36.000 0.00 0.00 0.00 2.85
3207 3305 7.468084 CGAAGGGAGTATTTGTTGTTTTGAAGA 60.468 37.037 0.00 0.00 0.00 2.87
3208 3306 6.636850 CGAAGGGAGTATTTGTTGTTTTGAAG 59.363 38.462 0.00 0.00 0.00 3.02
3209 3307 6.095720 ACGAAGGGAGTATTTGTTGTTTTGAA 59.904 34.615 0.00 0.00 0.00 2.69
3210 3308 5.591067 ACGAAGGGAGTATTTGTTGTTTTGA 59.409 36.000 0.00 0.00 0.00 2.69
3211 3309 5.827666 ACGAAGGGAGTATTTGTTGTTTTG 58.172 37.500 0.00 0.00 0.00 2.44
3212 3310 6.459670 AACGAAGGGAGTATTTGTTGTTTT 57.540 33.333 0.00 0.00 33.86 2.43
3213 3311 5.009310 GGAACGAAGGGAGTATTTGTTGTTT 59.991 40.000 0.00 0.00 34.99 2.83
3214 3312 4.517832 GGAACGAAGGGAGTATTTGTTGTT 59.482 41.667 0.00 0.00 34.99 2.83
3215 3313 4.070009 GGAACGAAGGGAGTATTTGTTGT 58.930 43.478 0.00 0.00 34.99 3.32
3216 3314 4.069304 TGGAACGAAGGGAGTATTTGTTG 58.931 43.478 0.00 0.00 34.99 3.33
3217 3315 4.360951 TGGAACGAAGGGAGTATTTGTT 57.639 40.909 0.00 0.00 37.05 2.83
3218 3316 4.360951 TTGGAACGAAGGGAGTATTTGT 57.639 40.909 0.00 0.00 0.00 2.83
3219 3317 5.699097 TTTTGGAACGAAGGGAGTATTTG 57.301 39.130 0.00 0.00 0.00 2.32
3220 3318 7.668469 ACTTATTTTGGAACGAAGGGAGTATTT 59.332 33.333 0.00 0.00 0.00 1.40
3221 3319 7.120726 CACTTATTTTGGAACGAAGGGAGTATT 59.879 37.037 0.00 0.00 0.00 1.89
3222 3320 6.598064 CACTTATTTTGGAACGAAGGGAGTAT 59.402 38.462 0.00 0.00 0.00 2.12
3223 3321 5.935789 CACTTATTTTGGAACGAAGGGAGTA 59.064 40.000 0.00 0.00 0.00 2.59
3224 3322 4.760204 CACTTATTTTGGAACGAAGGGAGT 59.240 41.667 0.00 0.00 0.00 3.85
3225 3323 4.760204 ACACTTATTTTGGAACGAAGGGAG 59.240 41.667 0.00 0.00 0.00 4.30
3226 3324 4.721132 ACACTTATTTTGGAACGAAGGGA 58.279 39.130 0.00 0.00 0.00 4.20
3227 3325 4.760204 AGACACTTATTTTGGAACGAAGGG 59.240 41.667 0.00 0.00 0.00 3.95
3228 3326 5.468746 TGAGACACTTATTTTGGAACGAAGG 59.531 40.000 0.00 0.00 0.00 3.46
3229 3327 6.539649 TGAGACACTTATTTTGGAACGAAG 57.460 37.500 0.00 0.00 0.00 3.79
3230 3328 6.540914 AGTTGAGACACTTATTTTGGAACGAA 59.459 34.615 0.00 0.00 0.00 3.85
3231 3329 6.053005 AGTTGAGACACTTATTTTGGAACGA 58.947 36.000 0.00 0.00 0.00 3.85
3232 3330 6.300354 AGTTGAGACACTTATTTTGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
3233 3331 7.973944 ACAAAGTTGAGACACTTATTTTGGAAC 59.026 33.333 0.00 0.00 35.87 3.62
3234 3332 8.062065 ACAAAGTTGAGACACTTATTTTGGAA 57.938 30.769 0.00 0.00 35.87 3.53
3235 3333 7.639113 ACAAAGTTGAGACACTTATTTTGGA 57.361 32.000 0.00 0.00 35.87 3.53
3236 3334 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
3239 3337 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
3240 3338 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
3241 3339 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
3242 3340 7.286215 AGCTAGTACAAAGTTGAGACACTTA 57.714 36.000 0.00 0.00 35.87 2.24
3243 3341 6.163135 AGCTAGTACAAAGTTGAGACACTT 57.837 37.500 0.00 0.00 38.74 3.16
3244 3342 5.793030 AGCTAGTACAAAGTTGAGACACT 57.207 39.130 0.00 0.00 0.00 3.55
3245 3343 5.983720 TGAAGCTAGTACAAAGTTGAGACAC 59.016 40.000 0.00 0.00 0.00 3.67
3246 3344 6.156748 TGAAGCTAGTACAAAGTTGAGACA 57.843 37.500 0.00 0.00 0.00 3.41
3247 3345 7.659652 ATTGAAGCTAGTACAAAGTTGAGAC 57.340 36.000 0.00 0.00 0.00 3.36
3248 3346 8.364894 TGTATTGAAGCTAGTACAAAGTTGAGA 58.635 33.333 0.00 0.00 0.00 3.27
3249 3347 8.534333 TGTATTGAAGCTAGTACAAAGTTGAG 57.466 34.615 0.00 0.00 0.00 3.02
3250 3348 8.896320 TTGTATTGAAGCTAGTACAAAGTTGA 57.104 30.769 2.95 0.00 34.98 3.18
3255 3353 9.116067 ACAACTTTGTATTGAAGCTAGTACAAA 57.884 29.630 13.54 13.54 41.85 2.83
3256 3354 8.671384 ACAACTTTGTATTGAAGCTAGTACAA 57.329 30.769 0.00 1.59 40.16 2.41
3257 3355 9.199982 GTACAACTTTGTATTGAAGCTAGTACA 57.800 33.333 5.16 0.00 44.59 2.90
3258 3356 9.420551 AGTACAACTTTGTATTGAAGCTAGTAC 57.579 33.333 5.16 0.00 44.59 2.73
3260 3358 9.991906 TTAGTACAACTTTGTATTGAAGCTAGT 57.008 29.630 5.16 0.00 44.59 2.57
3262 3360 9.431887 CCTTAGTACAACTTTGTATTGAAGCTA 57.568 33.333 5.16 0.00 44.59 3.32
3263 3361 7.937394 ACCTTAGTACAACTTTGTATTGAAGCT 59.063 33.333 5.16 0.26 44.59 3.74
3264 3362 8.095937 ACCTTAGTACAACTTTGTATTGAAGC 57.904 34.615 5.16 0.00 44.59 3.86
3265 3363 9.268268 TGACCTTAGTACAACTTTGTATTGAAG 57.732 33.333 5.16 8.60 44.59 3.02
3266 3364 9.616156 TTGACCTTAGTACAACTTTGTATTGAA 57.384 29.630 5.16 0.72 44.59 2.69
3267 3365 9.268268 CTTGACCTTAGTACAACTTTGTATTGA 57.732 33.333 5.16 0.00 44.59 2.57
3268 3366 9.268268 TCTTGACCTTAGTACAACTTTGTATTG 57.732 33.333 5.16 0.00 44.59 1.90
3269 3367 9.269453 GTCTTGACCTTAGTACAACTTTGTATT 57.731 33.333 5.16 4.04 44.59 1.89
3270 3368 8.426489 TGTCTTGACCTTAGTACAACTTTGTAT 58.574 33.333 5.16 0.00 44.59 2.29
3271 3369 7.707893 GTGTCTTGACCTTAGTACAACTTTGTA 59.292 37.037 0.00 0.00 42.35 2.41
3272 3370 6.537660 GTGTCTTGACCTTAGTACAACTTTGT 59.462 38.462 0.00 0.00 44.86 2.83
3273 3371 6.761714 AGTGTCTTGACCTTAGTACAACTTTG 59.238 38.462 0.00 0.00 0.00 2.77
3274 3372 6.885922 AGTGTCTTGACCTTAGTACAACTTT 58.114 36.000 0.00 0.00 0.00 2.66
3275 3373 6.481434 AGTGTCTTGACCTTAGTACAACTT 57.519 37.500 0.00 0.00 0.00 2.66
3276 3374 6.481434 AAGTGTCTTGACCTTAGTACAACT 57.519 37.500 0.00 0.00 0.00 3.16
3277 3375 8.828688 AATAAGTGTCTTGACCTTAGTACAAC 57.171 34.615 0.00 0.00 0.00 3.32
3278 3376 9.841295 AAAATAAGTGTCTTGACCTTAGTACAA 57.159 29.630 0.00 0.00 0.00 2.41
3282 3380 9.841295 TTGTAAAATAAGTGTCTTGACCTTAGT 57.159 29.630 13.13 9.86 0.00 2.24
3285 3383 9.185680 ACTTTGTAAAATAAGTGTCTTGACCTT 57.814 29.630 0.00 4.52 33.55 3.50
3286 3384 8.747538 ACTTTGTAAAATAAGTGTCTTGACCT 57.252 30.769 0.00 0.00 33.55 3.85
3287 3385 9.233232 CAACTTTGTAAAATAAGTGTCTTGACC 57.767 33.333 0.00 0.00 34.95 4.02
3288 3386 9.783256 ACAACTTTGTAAAATAAGTGTCTTGAC 57.217 29.630 0.00 0.00 40.16 3.18
3305 3403 9.662947 AAGTGTCTTAACTTAGTACAACTTTGT 57.337 29.630 0.00 0.00 40.53 2.83
3318 3416 9.832445 TCTGTCTCAAAATAAGTGTCTTAACTT 57.168 29.630 0.00 0.00 42.89 2.66
3319 3417 9.482627 CTCTGTCTCAAAATAAGTGTCTTAACT 57.517 33.333 0.00 0.00 0.00 2.24
3320 3418 8.713271 CCTCTGTCTCAAAATAAGTGTCTTAAC 58.287 37.037 0.00 0.00 0.00 2.01
3321 3419 7.387948 GCCTCTGTCTCAAAATAAGTGTCTTAA 59.612 37.037 0.00 0.00 0.00 1.85
3322 3420 6.874134 GCCTCTGTCTCAAAATAAGTGTCTTA 59.126 38.462 0.00 0.00 0.00 2.10
3323 3421 5.703130 GCCTCTGTCTCAAAATAAGTGTCTT 59.297 40.000 0.00 0.00 0.00 3.01
3324 3422 5.241662 GCCTCTGTCTCAAAATAAGTGTCT 58.758 41.667 0.00 0.00 0.00 3.41
3325 3423 4.092091 CGCCTCTGTCTCAAAATAAGTGTC 59.908 45.833 0.00 0.00 0.00 3.67
3326 3424 3.997021 CGCCTCTGTCTCAAAATAAGTGT 59.003 43.478 0.00 0.00 0.00 3.55
3327 3425 3.997021 ACGCCTCTGTCTCAAAATAAGTG 59.003 43.478 0.00 0.00 0.00 3.16
3328 3426 4.273148 ACGCCTCTGTCTCAAAATAAGT 57.727 40.909 0.00 0.00 0.00 2.24
3329 3427 5.168569 TGTACGCCTCTGTCTCAAAATAAG 58.831 41.667 0.00 0.00 0.00 1.73
3330 3428 5.142061 TGTACGCCTCTGTCTCAAAATAA 57.858 39.130 0.00 0.00 0.00 1.40
3331 3429 4.794278 TGTACGCCTCTGTCTCAAAATA 57.206 40.909 0.00 0.00 0.00 1.40
3332 3430 3.678056 TGTACGCCTCTGTCTCAAAAT 57.322 42.857 0.00 0.00 0.00 1.82
3333 3431 3.462483 TTGTACGCCTCTGTCTCAAAA 57.538 42.857 0.00 0.00 0.00 2.44
3334 3432 3.462483 TTTGTACGCCTCTGTCTCAAA 57.538 42.857 0.00 0.00 0.00 2.69
3335 3433 3.069016 TCTTTTGTACGCCTCTGTCTCAA 59.931 43.478 0.00 0.00 0.00 3.02
3336 3434 2.626266 TCTTTTGTACGCCTCTGTCTCA 59.374 45.455 0.00 0.00 0.00 3.27
3337 3435 3.299340 TCTTTTGTACGCCTCTGTCTC 57.701 47.619 0.00 0.00 0.00 3.36
3338 3436 3.181469 TGTTCTTTTGTACGCCTCTGTCT 60.181 43.478 0.00 0.00 0.00 3.41
3339 3437 3.128349 TGTTCTTTTGTACGCCTCTGTC 58.872 45.455 0.00 0.00 0.00 3.51
3340 3438 3.188159 TGTTCTTTTGTACGCCTCTGT 57.812 42.857 0.00 0.00 0.00 3.41
3341 3439 4.035208 AGTTTGTTCTTTTGTACGCCTCTG 59.965 41.667 0.00 0.00 0.00 3.35
3342 3440 4.196971 AGTTTGTTCTTTTGTACGCCTCT 58.803 39.130 0.00 0.00 0.00 3.69
3343 3441 4.272748 AGAGTTTGTTCTTTTGTACGCCTC 59.727 41.667 0.00 0.00 0.00 4.70
3344 3442 4.196971 AGAGTTTGTTCTTTTGTACGCCT 58.803 39.130 0.00 0.00 0.00 5.52
3345 3443 4.547406 AGAGTTTGTTCTTTTGTACGCC 57.453 40.909 0.00 0.00 0.00 5.68
3346 3444 8.277713 TGTATTAGAGTTTGTTCTTTTGTACGC 58.722 33.333 0.00 0.00 0.00 4.42
3347 3445 9.577003 GTGTATTAGAGTTTGTTCTTTTGTACG 57.423 33.333 0.00 0.00 0.00 3.67
3363 3461 9.438291 CTAAATTTTGCGGAATGTGTATTAGAG 57.562 33.333 0.00 0.00 0.00 2.43
3366 3464 8.282455 TCCTAAATTTTGCGGAATGTGTATTA 57.718 30.769 0.00 0.00 0.00 0.98
3378 3476 4.497473 TGACAACCTCCTAAATTTTGCG 57.503 40.909 0.00 0.00 0.00 4.85
3386 3484 0.696501 GCCCCTTGACAACCTCCTAA 59.303 55.000 0.00 0.00 0.00 2.69
3398 3496 2.117156 CGATGCCTCTTGCCCCTTG 61.117 63.158 0.00 0.00 40.16 3.61
3399 3497 2.273449 CGATGCCTCTTGCCCCTT 59.727 61.111 0.00 0.00 40.16 3.95
3404 3529 0.105593 TCTCATCCGATGCCTCTTGC 59.894 55.000 3.25 0.00 41.77 4.01
3406 3531 1.202627 GCTTCTCATCCGATGCCTCTT 60.203 52.381 3.25 0.00 0.00 2.85
3413 3538 0.962489 CCCTACGCTTCTCATCCGAT 59.038 55.000 0.00 0.00 0.00 4.18
3416 3541 0.676736 CTCCCCTACGCTTCTCATCC 59.323 60.000 0.00 0.00 0.00 3.51
3418 3543 0.261991 TCCTCCCCTACGCTTCTCAT 59.738 55.000 0.00 0.00 0.00 2.90
3424 3549 2.123640 GCTCTCCTCCCCTACGCT 60.124 66.667 0.00 0.00 0.00 5.07
3425 3550 2.442272 TGCTCTCCTCCCCTACGC 60.442 66.667 0.00 0.00 0.00 4.42
3426 3551 1.076632 AGTGCTCTCCTCCCCTACG 60.077 63.158 0.00 0.00 0.00 3.51
3427 3552 1.045911 CCAGTGCTCTCCTCCCCTAC 61.046 65.000 0.00 0.00 0.00 3.18
3428 3553 1.311403 CCAGTGCTCTCCTCCCCTA 59.689 63.158 0.00 0.00 0.00 3.53
3431 3556 2.039624 TCCCAGTGCTCTCCTCCC 59.960 66.667 0.00 0.00 0.00 4.30
3433 3558 1.662438 CTCGTCCCAGTGCTCTCCTC 61.662 65.000 0.00 0.00 0.00 3.71
3447 3590 5.525378 AGTGCTCAAAAATATGGATCTCGTC 59.475 40.000 0.00 0.00 0.00 4.20
3448 3591 5.295292 CAGTGCTCAAAAATATGGATCTCGT 59.705 40.000 0.00 0.00 0.00 4.18
3449 3592 5.277683 CCAGTGCTCAAAAATATGGATCTCG 60.278 44.000 0.00 0.00 0.00 4.04
3450 3593 5.009410 CCCAGTGCTCAAAAATATGGATCTC 59.991 44.000 0.00 0.00 0.00 2.75
3451 3594 4.891756 CCCAGTGCTCAAAAATATGGATCT 59.108 41.667 0.00 0.00 0.00 2.75
3452 3595 4.889409 TCCCAGTGCTCAAAAATATGGATC 59.111 41.667 0.00 0.00 0.00 3.36
3453 3596 4.870636 TCCCAGTGCTCAAAAATATGGAT 58.129 39.130 0.00 0.00 0.00 3.41
3454 3597 4.314522 TCCCAGTGCTCAAAAATATGGA 57.685 40.909 0.00 0.00 0.00 3.41
3455 3598 4.706476 TCTTCCCAGTGCTCAAAAATATGG 59.294 41.667 0.00 0.00 0.00 2.74
3456 3599 5.649395 TCTCTTCCCAGTGCTCAAAAATATG 59.351 40.000 0.00 0.00 0.00 1.78
3457 3600 5.819991 TCTCTTCCCAGTGCTCAAAAATAT 58.180 37.500 0.00 0.00 0.00 1.28
3458 3601 5.241403 TCTCTTCCCAGTGCTCAAAAATA 57.759 39.130 0.00 0.00 0.00 1.40
3459 3602 4.104383 TCTCTTCCCAGTGCTCAAAAAT 57.896 40.909 0.00 0.00 0.00 1.82
3460 3603 3.576078 TCTCTTCCCAGTGCTCAAAAA 57.424 42.857 0.00 0.00 0.00 1.94
3461 3604 3.560025 GGATCTCTTCCCAGTGCTCAAAA 60.560 47.826 0.00 0.00 38.75 2.44
3462 3605 2.026822 GGATCTCTTCCCAGTGCTCAAA 60.027 50.000 0.00 0.00 38.75 2.69
3463 3606 1.556911 GGATCTCTTCCCAGTGCTCAA 59.443 52.381 0.00 0.00 38.75 3.02
3464 3607 1.198713 GGATCTCTTCCCAGTGCTCA 58.801 55.000 0.00 0.00 38.75 4.26
3465 3608 1.198713 TGGATCTCTTCCCAGTGCTC 58.801 55.000 0.00 0.00 44.77 4.26
3466 3609 1.890552 ATGGATCTCTTCCCAGTGCT 58.109 50.000 0.00 0.00 44.77 4.40
3467 3610 4.363991 AATATGGATCTCTTCCCAGTGC 57.636 45.455 0.00 0.00 44.77 4.40
3468 3611 8.213679 TCTAAAAATATGGATCTCTTCCCAGTG 58.786 37.037 0.00 0.00 44.77 3.66
3469 3612 8.337118 TCTAAAAATATGGATCTCTTCCCAGT 57.663 34.615 0.00 0.00 44.77 4.00
3470 3613 9.804977 AATCTAAAAATATGGATCTCTTCCCAG 57.195 33.333 0.00 0.00 44.77 4.45
3471 3614 9.578576 CAATCTAAAAATATGGATCTCTTCCCA 57.421 33.333 0.00 0.00 44.77 4.37
3472 3615 8.518702 GCAATCTAAAAATATGGATCTCTTCCC 58.481 37.037 0.00 0.00 44.77 3.97
3487 3630 8.674263 AACCAATGAATGTTGCAATCTAAAAA 57.326 26.923 0.59 0.00 0.00 1.94
3491 3634 9.585099 GATAAAACCAATGAATGTTGCAATCTA 57.415 29.630 0.59 0.00 0.00 1.98
3503 3646 6.590677 TGACGTGATACGATAAAACCAATGAA 59.409 34.615 8.48 0.00 46.05 2.57
3505 3648 6.254804 TCTGACGTGATACGATAAAACCAATG 59.745 38.462 8.48 0.00 46.05 2.82
3515 3662 2.547826 TCGACTCTGACGTGATACGAT 58.452 47.619 8.48 0.00 46.05 3.73
3524 3671 3.483922 GCATAGAACAATCGACTCTGACG 59.516 47.826 0.00 0.00 0.00 4.35
3526 3673 3.695816 CGCATAGAACAATCGACTCTGA 58.304 45.455 0.00 0.00 0.00 3.27
3546 3693 1.428219 CAAGAATCTGCTGCTGGCG 59.572 57.895 6.69 0.00 45.43 5.69
3547 3694 1.139095 GCAAGAATCTGCTGCTGGC 59.861 57.895 6.69 0.00 39.34 4.85
3554 3701 1.268899 ACTGTGCAAGCAAGAATCTGC 59.731 47.619 0.00 0.00 42.97 4.26
3557 3704 4.214119 TCACTTACTGTGCAAGCAAGAATC 59.786 41.667 12.81 0.00 45.81 2.52
3571 3718 6.049955 TCTAATCCCCTTGTTCACTTACTG 57.950 41.667 0.00 0.00 0.00 2.74
3573 3720 7.610305 TGAAATCTAATCCCCTTGTTCACTTAC 59.390 37.037 0.00 0.00 0.00 2.34
3574 3721 7.695055 TGAAATCTAATCCCCTTGTTCACTTA 58.305 34.615 0.00 0.00 0.00 2.24
3577 3724 6.681368 GCATGAAATCTAATCCCCTTGTTCAC 60.681 42.308 0.00 0.00 0.00 3.18
3578 3725 5.360714 GCATGAAATCTAATCCCCTTGTTCA 59.639 40.000 0.00 0.00 0.00 3.18
3579 3726 5.360714 TGCATGAAATCTAATCCCCTTGTTC 59.639 40.000 0.00 0.00 0.00 3.18
3580 3727 5.271598 TGCATGAAATCTAATCCCCTTGTT 58.728 37.500 0.00 0.00 0.00 2.83
3581 3728 4.870636 TGCATGAAATCTAATCCCCTTGT 58.129 39.130 0.00 0.00 0.00 3.16
3582 3729 5.361857 ACTTGCATGAAATCTAATCCCCTTG 59.638 40.000 6.60 0.00 0.00 3.61
3584 3731 4.891756 CACTTGCATGAAATCTAATCCCCT 59.108 41.667 6.60 0.00 0.00 4.79
3586 3733 4.340381 AGCACTTGCATGAAATCTAATCCC 59.660 41.667 6.60 0.00 45.16 3.85
3587 3734 5.066893 TGAGCACTTGCATGAAATCTAATCC 59.933 40.000 6.60 0.00 45.16 3.01
3589 3736 6.327934 GTTGAGCACTTGCATGAAATCTAAT 58.672 36.000 6.60 0.00 45.16 1.73
3590 3737 5.335897 GGTTGAGCACTTGCATGAAATCTAA 60.336 40.000 6.60 0.00 45.16 2.10
3591 3738 4.156556 GGTTGAGCACTTGCATGAAATCTA 59.843 41.667 6.60 0.00 45.16 1.98
3592 3739 3.057033 GGTTGAGCACTTGCATGAAATCT 60.057 43.478 6.60 0.00 45.16 2.40
3593 3740 3.057033 AGGTTGAGCACTTGCATGAAATC 60.057 43.478 6.60 1.84 45.16 2.17
3594 3741 2.895404 AGGTTGAGCACTTGCATGAAAT 59.105 40.909 6.60 0.00 45.16 2.17
3595 3742 2.294233 GAGGTTGAGCACTTGCATGAAA 59.706 45.455 6.60 0.00 45.16 2.69
3598 3746 1.241165 TGAGGTTGAGCACTTGCATG 58.759 50.000 3.62 0.00 45.16 4.06
3662 3811 8.902806 ACAAATGAACAATGTTCATATCCGTAT 58.097 29.630 33.49 18.35 38.11 3.06
3663 3812 8.275015 ACAAATGAACAATGTTCATATCCGTA 57.725 30.769 33.49 10.82 38.11 4.02
3664 3813 7.156876 ACAAATGAACAATGTTCATATCCGT 57.843 32.000 33.49 25.00 38.11 4.69
3665 3814 8.397906 ACTACAAATGAACAATGTTCATATCCG 58.602 33.333 33.49 24.51 38.11 4.18
3690 3839 6.347969 GGGTCGGTGTTGTTTCTATTTCTTAC 60.348 42.308 0.00 0.00 0.00 2.34
3700 3849 0.949397 GAAGGGGTCGGTGTTGTTTC 59.051 55.000 0.00 0.00 0.00 2.78
3711 3860 3.385314 ACAGTACTAGAGGAAGGGGTC 57.615 52.381 0.00 0.00 0.00 4.46
3719 3868 8.762426 GTTTTTGACAAGTTACAGTACTAGAGG 58.238 37.037 0.00 0.00 0.00 3.69
3733 3882 5.373981 TGTAAACACCGTTTTTGACAAGT 57.626 34.783 0.00 0.00 0.00 3.16
3734 3883 6.030849 TGATGTAAACACCGTTTTTGACAAG 58.969 36.000 0.00 0.00 0.00 3.16
3745 3894 2.482721 GTGACCCTTGATGTAAACACCG 59.517 50.000 0.00 0.00 0.00 4.94
3746 3895 3.482436 TGTGACCCTTGATGTAAACACC 58.518 45.455 0.00 0.00 0.00 4.16
3748 3897 3.750371 CCTGTGACCCTTGATGTAAACA 58.250 45.455 0.00 0.00 0.00 2.83
3749 3898 2.488153 GCCTGTGACCCTTGATGTAAAC 59.512 50.000 0.00 0.00 0.00 2.01
3766 3917 1.139163 GCGTGGTCAATTTTTGCCTG 58.861 50.000 0.00 0.00 0.00 4.85
3795 3946 7.844493 TCATACATCTTATAGGTAAACCGGT 57.156 36.000 0.00 0.00 42.08 5.28
3796 3947 9.151471 CATTCATACATCTTATAGGTAAACCGG 57.849 37.037 0.00 0.00 42.08 5.28
3821 3974 0.107410 ACGTTTTCTGTGCCTGTCCA 60.107 50.000 0.00 0.00 0.00 4.02
3833 3986 2.160063 GGCCTCGAAGGACGTTTTC 58.840 57.895 0.00 0.00 37.67 2.29
3864 4018 2.757314 TGACAGGAGAGCATAGACACTG 59.243 50.000 0.00 0.00 0.00 3.66
3876 4030 0.528017 GCAGTGACGATGACAGGAGA 59.472 55.000 0.00 0.00 0.00 3.71
3931 4085 8.887393 AGAACTTAATAGGGAACTTGGAACTTA 58.113 33.333 0.00 0.00 43.67 2.24
3933 4087 7.331089 AGAACTTAATAGGGAACTTGGAACT 57.669 36.000 0.00 0.00 43.67 3.01
3934 4088 9.327628 GATAGAACTTAATAGGGAACTTGGAAC 57.672 37.037 0.00 0.00 43.67 3.62
3935 4089 8.491958 GGATAGAACTTAATAGGGAACTTGGAA 58.508 37.037 0.00 0.00 43.67 3.53
3936 4090 7.626084 TGGATAGAACTTAATAGGGAACTTGGA 59.374 37.037 0.00 0.00 43.67 3.53
3937 4091 7.802117 TGGATAGAACTTAATAGGGAACTTGG 58.198 38.462 0.00 0.00 43.67 3.61
3938 4092 8.705594 TCTGGATAGAACTTAATAGGGAACTTG 58.294 37.037 0.00 0.00 43.67 3.16
3939 4093 8.855804 TCTGGATAGAACTTAATAGGGAACTT 57.144 34.615 0.00 0.00 43.67 2.66
3941 4095 9.713713 GAATCTGGATAGAACTTAATAGGGAAC 57.286 37.037 0.00 0.00 36.32 3.62
3942 4096 9.447279 TGAATCTGGATAGAACTTAATAGGGAA 57.553 33.333 0.00 0.00 36.32 3.97
3944 4098 8.875168 AGTGAATCTGGATAGAACTTAATAGGG 58.125 37.037 0.00 0.00 36.32 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.