Multiple sequence alignment - TraesCS4A01G261900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G261900 chr4A 100.000 4666 0 0 1 4666 574199659 574194994 0.000000e+00 8617.0
1 TraesCS4A01G261900 chr4A 96.659 2544 59 11 1774 4308 586737510 586734984 0.000000e+00 4204.0
2 TraesCS4A01G261900 chr4A 89.195 1342 91 25 2694 4001 456484907 456483586 0.000000e+00 1626.0
3 TraesCS4A01G261900 chr4A 92.683 820 37 10 782 1593 586738310 586737506 0.000000e+00 1160.0
4 TraesCS4A01G261900 chr4A 91.859 823 51 9 783 1593 456488961 456488143 0.000000e+00 1134.0
5 TraesCS4A01G261900 chr4A 93.528 618 30 8 6 620 637914862 637915472 0.000000e+00 911.0
6 TraesCS4A01G261900 chr4A 91.200 625 45 5 1999 2623 456485527 456484913 0.000000e+00 841.0
7 TraesCS4A01G261900 chr4A 98.795 249 2 1 4302 4549 586734960 586734712 4.280000e-120 442.0
8 TraesCS4A01G261900 chr4A 94.332 247 11 1 4423 4666 456483121 456482875 4.410000e-100 375.0
9 TraesCS4A01G261900 chr4A 96.970 165 5 0 617 781 574206568 574206404 1.280000e-70 278.0
10 TraesCS4A01G261900 chr4A 87.647 170 9 3 1852 2019 456485871 456485712 2.220000e-43 187.0
11 TraesCS4A01G261900 chr4A 87.647 170 9 3 1852 2019 456486676 456486517 2.220000e-43 187.0
12 TraesCS4A01G261900 chr4A 87.647 170 9 3 1852 2019 456487471 456487312 2.220000e-43 187.0
13 TraesCS4A01G261900 chr4A 87.135 171 9 4 1852 2019 456487971 456487811 1.030000e-41 182.0
14 TraesCS4A01G261900 chr4A 95.312 64 3 0 1781 1844 456486033 456485970 8.260000e-18 102.0
15 TraesCS4A01G261900 chr4A 95.312 64 3 0 1781 1844 456487633 456487570 8.260000e-18 102.0
16 TraesCS4A01G261900 chr4A 95.312 64 3 0 1781 1844 456488133 456488070 8.260000e-18 102.0
17 TraesCS4A01G261900 chr4A 97.872 47 1 0 1547 1593 456486089 456486043 1.080000e-11 82.4
18 TraesCS4A01G261900 chr4A 97.872 47 1 0 1547 1593 456486894 456486848 1.080000e-11 82.4
19 TraesCS4A01G261900 chr4D 86.965 2593 189 62 1781 4308 14664034 14666542 0.000000e+00 2778.0
20 TraesCS4A01G261900 chr4D 92.435 1150 57 11 2723 3861 14609483 14608353 0.000000e+00 1615.0
21 TraesCS4A01G261900 chr4D 88.457 823 48 15 783 1593 14611312 14610525 0.000000e+00 950.0
22 TraesCS4A01G261900 chr4D 88.053 837 49 23 1781 2604 14610515 14609717 0.000000e+00 944.0
23 TraesCS4A01G261900 chr4D 87.788 565 43 11 782 1323 14663172 14663733 5.090000e-179 638.0
24 TraesCS4A01G261900 chr4D 95.726 351 12 1 3961 4308 14608216 14607866 3.150000e-156 562.0
25 TraesCS4A01G261900 chr4D 88.594 377 24 10 4305 4666 14666570 14666942 1.540000e-119 440.0
26 TraesCS4A01G261900 chr4D 86.842 380 28 7 4305 4666 14607838 14607463 5.620000e-109 405.0
27 TraesCS4A01G261900 chr4D 96.373 193 6 1 1583 1775 503922215 503922024 2.710000e-82 316.0
28 TraesCS4A01G261900 chr4D 93.798 129 8 0 1465 1593 14663896 14664024 1.320000e-45 195.0
29 TraesCS4A01G261900 chr4D 89.773 88 2 3 1380 1466 14663731 14663812 6.390000e-19 106.0
30 TraesCS4A01G261900 chr4B 87.121 1747 135 43 2631 4308 24565328 24567053 0.000000e+00 1897.0
31 TraesCS4A01G261900 chr4B 90.326 858 66 10 1781 2631 24564219 24565066 0.000000e+00 1109.0
32 TraesCS4A01G261900 chr4B 91.790 609 33 6 782 1379 24563364 24563966 0.000000e+00 832.0
33 TraesCS4A01G261900 chr3B 85.584 1311 104 45 2737 3987 452863366 452862081 0.000000e+00 1295.0
34 TraesCS4A01G261900 chr3B 87.927 820 56 18 782 1591 452865089 452864303 0.000000e+00 926.0
35 TraesCS4A01G261900 chr3B 86.506 830 75 17 1781 2605 452864291 452863494 0.000000e+00 878.0
36 TraesCS4A01G261900 chr3A 94.222 623 29 6 1 618 701736583 701735963 0.000000e+00 944.0
37 TraesCS4A01G261900 chr3A 93.344 631 33 7 1 624 46711994 46712622 0.000000e+00 924.0
38 TraesCS4A01G261900 chr3A 95.897 195 7 1 1588 1781 9037821 9037627 9.750000e-82 315.0
39 TraesCS4A01G261900 chr3A 79.375 320 45 10 4306 4624 38989883 38990182 6.120000e-49 206.0
40 TraesCS4A01G261900 chrUn 93.005 629 31 11 1 620 82233645 82234269 0.000000e+00 905.0
41 TraesCS4A01G261900 chrUn 93.005 629 31 11 1 620 438819265 438819889 0.000000e+00 905.0
42 TraesCS4A01G261900 chrUn 92.063 630 34 11 1 620 48198048 48198671 0.000000e+00 872.0
43 TraesCS4A01G261900 chr5A 93.884 605 29 6 20 618 709521799 709522401 0.000000e+00 905.0
44 TraesCS4A01G261900 chr7A 93.109 624 31 10 1 620 639314402 639313787 0.000000e+00 904.0
45 TraesCS4A01G261900 chr6B 93.087 622 32 10 1 618 9569351 9569965 0.000000e+00 900.0
46 TraesCS4A01G261900 chr7D 97.354 189 5 0 1588 1776 161844577 161844389 5.820000e-84 322.0
47 TraesCS4A01G261900 chr7D 96.875 160 5 0 622 781 229929464 229929623 7.700000e-68 268.0
48 TraesCS4A01G261900 chr7D 96.250 160 4 1 622 781 229923690 229923847 1.290000e-65 261.0
49 TraesCS4A01G261900 chr2D 97.340 188 5 0 1589 1776 26038779 26038966 2.090000e-83 320.0
50 TraesCS4A01G261900 chr2D 79.688 320 40 13 4306 4624 431520172 431520467 1.700000e-49 207.0
51 TraesCS4A01G261900 chr2B 97.340 188 5 0 1589 1776 230774034 230773847 2.090000e-83 320.0
52 TraesCS4A01G261900 chr5B 96.859 191 5 1 1590 1779 2812408 2812598 7.530000e-83 318.0
53 TraesCS4A01G261900 chr1D 97.326 187 5 0 1590 1776 93500982 93501168 7.530000e-83 318.0
54 TraesCS4A01G261900 chr3D 96.809 188 6 0 1588 1775 142708586 142708773 9.750000e-82 315.0
55 TraesCS4A01G261900 chr3D 96.354 192 4 2 1586 1776 511346430 511346619 3.510000e-81 313.0
56 TraesCS4A01G261900 chr3D 79.688 320 44 10 4306 4624 351931846 351932145 1.320000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G261900 chr4A 574194994 574199659 4665 True 8617.000000 8617 100.000000 1 4666 1 chr4A.!!$R1 4665
1 TraesCS4A01G261900 chr4A 586734712 586738310 3598 True 1935.333333 4204 96.045667 782 4549 3 chr4A.!!$R4 3767
2 TraesCS4A01G261900 chr4A 637914862 637915472 610 False 911.000000 911 93.528000 6 620 1 chr4A.!!$F1 614
3 TraesCS4A01G261900 chr4A 456482875 456488961 6086 True 399.215385 1626 92.180154 783 4666 13 chr4A.!!$R3 3883
4 TraesCS4A01G261900 chr4D 14607463 14611312 3849 True 895.200000 1615 90.302600 783 4666 5 chr4D.!!$R2 3883
5 TraesCS4A01G261900 chr4D 14663172 14666942 3770 False 831.400000 2778 89.383600 782 4666 5 chr4D.!!$F1 3884
6 TraesCS4A01G261900 chr4B 24563364 24567053 3689 False 1279.333333 1897 89.745667 782 4308 3 chr4B.!!$F1 3526
7 TraesCS4A01G261900 chr3B 452862081 452865089 3008 True 1033.000000 1295 86.672333 782 3987 3 chr3B.!!$R1 3205
8 TraesCS4A01G261900 chr3A 701735963 701736583 620 True 944.000000 944 94.222000 1 618 1 chr3A.!!$R2 617
9 TraesCS4A01G261900 chr3A 46711994 46712622 628 False 924.000000 924 93.344000 1 624 1 chr3A.!!$F2 623
10 TraesCS4A01G261900 chrUn 82233645 82234269 624 False 905.000000 905 93.005000 1 620 1 chrUn.!!$F2 619
11 TraesCS4A01G261900 chrUn 438819265 438819889 624 False 905.000000 905 93.005000 1 620 1 chrUn.!!$F3 619
12 TraesCS4A01G261900 chrUn 48198048 48198671 623 False 872.000000 872 92.063000 1 620 1 chrUn.!!$F1 619
13 TraesCS4A01G261900 chr5A 709521799 709522401 602 False 905.000000 905 93.884000 20 618 1 chr5A.!!$F1 598
14 TraesCS4A01G261900 chr7A 639313787 639314402 615 True 904.000000 904 93.109000 1 620 1 chr7A.!!$R1 619
15 TraesCS4A01G261900 chr6B 9569351 9569965 614 False 900.000000 900 93.087000 1 618 1 chr6B.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 701 0.101399 AGTAGCTGTTGCGATCCTCG 59.899 55.000 0.0 0.0 45.42 4.63 F
699 723 0.179000 GTCCATCCCGCATCTTCAGT 59.821 55.000 0.0 0.0 0.00 3.41 F
1613 1813 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.0 0.0 43.88 3.85 F
1777 1977 0.114168 TGAACCAATCACCCCCTTGG 59.886 55.000 0.0 0.0 46.03 3.61 F
3437 6454 1.669115 CTCACAGGGCAACACTCCG 60.669 63.158 0.0 0.0 39.74 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1958 0.114168 CCAAGGGGGTGATTGGTTCA 59.886 55.0 0.00 0.00 40.93 3.18 R
1763 1963 0.331278 TGTAGCCAAGGGGGTGATTG 59.669 55.0 0.00 0.00 46.52 2.67 R
2993 5982 0.397941 CTGACTCCCCAGCAAACTCA 59.602 55.0 0.00 0.00 0.00 3.41 R
3520 6540 2.065899 ACAAAGTTGCCTGCTGGTAA 57.934 45.0 9.08 9.08 35.57 2.85 R
4640 7921 2.403252 ACCTGGTCCGAATGAATCAC 57.597 50.0 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 179 3.596066 GAGAAGGAGCGCCAGTGCA 62.596 63.158 9.88 0.00 37.32 4.57
624 648 3.416156 GGCTGGAGATGCCCTTATAAAG 58.584 50.000 0.00 0.00 44.32 1.85
625 649 2.816672 GCTGGAGATGCCCTTATAAAGC 59.183 50.000 1.09 1.09 34.97 3.51
626 650 3.748668 GCTGGAGATGCCCTTATAAAGCA 60.749 47.826 11.17 11.17 41.50 3.91
627 651 4.070716 CTGGAGATGCCCTTATAAAGCAG 58.929 47.826 13.51 0.00 40.40 4.24
628 652 3.716353 TGGAGATGCCCTTATAAAGCAGA 59.284 43.478 13.51 0.00 40.40 4.26
629 653 4.202398 TGGAGATGCCCTTATAAAGCAGAG 60.202 45.833 13.51 0.00 40.40 3.35
630 654 4.322567 GAGATGCCCTTATAAAGCAGAGG 58.677 47.826 13.51 0.00 40.40 3.69
631 655 3.976654 AGATGCCCTTATAAAGCAGAGGA 59.023 43.478 13.51 0.00 40.40 3.71
632 656 4.413520 AGATGCCCTTATAAAGCAGAGGAA 59.586 41.667 13.51 0.00 40.40 3.36
633 657 4.156455 TGCCCTTATAAAGCAGAGGAAG 57.844 45.455 5.88 0.00 31.65 3.46
634 658 3.523564 TGCCCTTATAAAGCAGAGGAAGT 59.476 43.478 5.88 0.00 31.65 3.01
635 659 4.719773 TGCCCTTATAAAGCAGAGGAAGTA 59.280 41.667 5.88 0.00 31.65 2.24
636 660 5.190925 TGCCCTTATAAAGCAGAGGAAGTAA 59.809 40.000 5.88 0.00 31.65 2.24
637 661 6.120220 GCCCTTATAAAGCAGAGGAAGTAAA 58.880 40.000 2.95 0.00 0.00 2.01
638 662 6.602009 GCCCTTATAAAGCAGAGGAAGTAAAA 59.398 38.462 2.95 0.00 0.00 1.52
639 663 7.415318 GCCCTTATAAAGCAGAGGAAGTAAAAC 60.415 40.741 2.95 0.00 0.00 2.43
640 664 7.610305 CCCTTATAAAGCAGAGGAAGTAAAACA 59.390 37.037 0.00 0.00 0.00 2.83
641 665 8.669243 CCTTATAAAGCAGAGGAAGTAAAACAG 58.331 37.037 0.00 0.00 0.00 3.16
642 666 8.561738 TTATAAAGCAGAGGAAGTAAAACAGG 57.438 34.615 0.00 0.00 0.00 4.00
643 667 3.425162 AGCAGAGGAAGTAAAACAGGG 57.575 47.619 0.00 0.00 0.00 4.45
644 668 2.979678 AGCAGAGGAAGTAAAACAGGGA 59.020 45.455 0.00 0.00 0.00 4.20
645 669 3.008485 AGCAGAGGAAGTAAAACAGGGAG 59.992 47.826 0.00 0.00 0.00 4.30
646 670 3.008049 GCAGAGGAAGTAAAACAGGGAGA 59.992 47.826 0.00 0.00 0.00 3.71
647 671 4.826556 CAGAGGAAGTAAAACAGGGAGAG 58.173 47.826 0.00 0.00 0.00 3.20
648 672 4.284746 CAGAGGAAGTAAAACAGGGAGAGT 59.715 45.833 0.00 0.00 0.00 3.24
649 673 4.284746 AGAGGAAGTAAAACAGGGAGAGTG 59.715 45.833 0.00 0.00 0.00 3.51
650 674 3.328050 AGGAAGTAAAACAGGGAGAGTGG 59.672 47.826 0.00 0.00 0.00 4.00
651 675 3.326880 GGAAGTAAAACAGGGAGAGTGGA 59.673 47.826 0.00 0.00 0.00 4.02
652 676 4.316645 GAAGTAAAACAGGGAGAGTGGAC 58.683 47.826 0.00 0.00 0.00 4.02
653 677 2.299297 AGTAAAACAGGGAGAGTGGACG 59.701 50.000 0.00 0.00 0.00 4.79
654 678 0.396811 AAAACAGGGAGAGTGGACGG 59.603 55.000 0.00 0.00 0.00 4.79
655 679 0.763223 AAACAGGGAGAGTGGACGGT 60.763 55.000 0.00 0.00 0.00 4.83
656 680 0.113776 AACAGGGAGAGTGGACGGTA 59.886 55.000 0.00 0.00 0.00 4.02
657 681 0.113776 ACAGGGAGAGTGGACGGTAA 59.886 55.000 0.00 0.00 0.00 2.85
658 682 1.263356 CAGGGAGAGTGGACGGTAAA 58.737 55.000 0.00 0.00 0.00 2.01
659 683 1.204941 CAGGGAGAGTGGACGGTAAAG 59.795 57.143 0.00 0.00 0.00 1.85
660 684 1.203149 AGGGAGAGTGGACGGTAAAGT 60.203 52.381 0.00 0.00 0.00 2.66
661 685 2.042162 AGGGAGAGTGGACGGTAAAGTA 59.958 50.000 0.00 0.00 0.00 2.24
662 686 2.426381 GGGAGAGTGGACGGTAAAGTAG 59.574 54.545 0.00 0.00 0.00 2.57
663 687 2.159268 GGAGAGTGGACGGTAAAGTAGC 60.159 54.545 0.00 0.00 0.00 3.58
664 688 2.754002 GAGAGTGGACGGTAAAGTAGCT 59.246 50.000 0.00 0.00 0.00 3.32
665 689 2.492484 AGAGTGGACGGTAAAGTAGCTG 59.508 50.000 0.00 0.00 0.00 4.24
666 690 2.230750 GAGTGGACGGTAAAGTAGCTGT 59.769 50.000 0.00 0.00 0.00 4.40
667 691 2.631545 AGTGGACGGTAAAGTAGCTGTT 59.368 45.455 0.00 0.00 0.00 3.16
668 692 2.735134 GTGGACGGTAAAGTAGCTGTTG 59.265 50.000 0.00 0.00 0.00 3.33
669 693 1.730612 GGACGGTAAAGTAGCTGTTGC 59.269 52.381 0.00 0.00 40.05 4.17
670 694 1.389106 GACGGTAAAGTAGCTGTTGCG 59.611 52.381 0.00 0.00 45.42 4.85
671 695 1.000060 ACGGTAAAGTAGCTGTTGCGA 60.000 47.619 0.00 0.00 45.42 5.10
672 696 2.268298 CGGTAAAGTAGCTGTTGCGAT 58.732 47.619 0.00 0.00 45.42 4.58
673 697 2.281762 CGGTAAAGTAGCTGTTGCGATC 59.718 50.000 0.00 0.00 45.42 3.69
674 698 2.608090 GGTAAAGTAGCTGTTGCGATCC 59.392 50.000 0.00 0.00 45.42 3.36
675 699 2.770164 AAAGTAGCTGTTGCGATCCT 57.230 45.000 0.00 0.00 45.42 3.24
676 700 2.301577 AAGTAGCTGTTGCGATCCTC 57.698 50.000 0.00 0.00 45.42 3.71
677 701 0.101399 AGTAGCTGTTGCGATCCTCG 59.899 55.000 0.00 0.00 45.42 4.63
686 710 2.049985 CGATCCTCGCCGTCCATC 60.050 66.667 0.00 0.00 31.14 3.51
687 711 2.340443 GATCCTCGCCGTCCATCC 59.660 66.667 0.00 0.00 0.00 3.51
688 712 3.227792 GATCCTCGCCGTCCATCCC 62.228 68.421 0.00 0.00 0.00 3.85
694 718 4.241555 GCCGTCCATCCCGCATCT 62.242 66.667 0.00 0.00 0.00 2.90
695 719 2.505982 CCGTCCATCCCGCATCTT 59.494 61.111 0.00 0.00 0.00 2.40
696 720 1.595382 CCGTCCATCCCGCATCTTC 60.595 63.158 0.00 0.00 0.00 2.87
697 721 1.143838 CGTCCATCCCGCATCTTCA 59.856 57.895 0.00 0.00 0.00 3.02
698 722 0.877649 CGTCCATCCCGCATCTTCAG 60.878 60.000 0.00 0.00 0.00 3.02
699 723 0.179000 GTCCATCCCGCATCTTCAGT 59.821 55.000 0.00 0.00 0.00 3.41
700 724 0.465705 TCCATCCCGCATCTTCAGTC 59.534 55.000 0.00 0.00 0.00 3.51
701 725 0.467384 CCATCCCGCATCTTCAGTCT 59.533 55.000 0.00 0.00 0.00 3.24
702 726 1.134280 CCATCCCGCATCTTCAGTCTT 60.134 52.381 0.00 0.00 0.00 3.01
703 727 1.938577 CATCCCGCATCTTCAGTCTTG 59.061 52.381 0.00 0.00 0.00 3.02
704 728 1.266178 TCCCGCATCTTCAGTCTTGA 58.734 50.000 0.00 0.00 0.00 3.02
705 729 1.066858 TCCCGCATCTTCAGTCTTGAC 60.067 52.381 0.00 0.00 31.71 3.18
706 730 1.363744 CCGCATCTTCAGTCTTGACC 58.636 55.000 0.00 0.00 31.71 4.02
707 731 0.994995 CGCATCTTCAGTCTTGACCG 59.005 55.000 0.00 0.00 31.71 4.79
708 732 1.670087 CGCATCTTCAGTCTTGACCGT 60.670 52.381 0.00 0.00 31.71 4.83
709 733 2.415491 CGCATCTTCAGTCTTGACCGTA 60.415 50.000 0.00 0.00 31.71 4.02
710 734 3.182967 GCATCTTCAGTCTTGACCGTAG 58.817 50.000 0.00 0.00 31.71 3.51
726 750 3.185246 CGTAGGATCTTCATTGTGGCT 57.815 47.619 0.00 0.00 0.00 4.75
727 751 2.868583 CGTAGGATCTTCATTGTGGCTG 59.131 50.000 0.00 0.00 0.00 4.85
728 752 3.430790 CGTAGGATCTTCATTGTGGCTGA 60.431 47.826 0.00 0.00 0.00 4.26
729 753 3.726557 AGGATCTTCATTGTGGCTGAA 57.273 42.857 0.00 0.00 0.00 3.02
730 754 3.350833 AGGATCTTCATTGTGGCTGAAC 58.649 45.455 0.00 0.00 0.00 3.18
731 755 2.424956 GGATCTTCATTGTGGCTGAACC 59.575 50.000 0.00 0.00 39.84 3.62
732 756 1.522668 TCTTCATTGTGGCTGAACCG 58.477 50.000 0.00 0.00 43.94 4.44
733 757 0.523072 CTTCATTGTGGCTGAACCGG 59.477 55.000 0.00 0.00 43.94 5.28
734 758 1.523154 TTCATTGTGGCTGAACCGGC 61.523 55.000 0.00 0.00 43.94 6.13
735 759 2.115052 ATTGTGGCTGAACCGGCA 59.885 55.556 0.00 0.00 43.94 5.69
736 760 1.304381 ATTGTGGCTGAACCGGCAT 60.304 52.632 0.00 0.00 43.94 4.40
737 761 1.597797 ATTGTGGCTGAACCGGCATG 61.598 55.000 0.00 0.00 43.94 4.06
738 762 3.443045 GTGGCTGAACCGGCATGG 61.443 66.667 0.00 0.00 43.94 3.66
739 763 4.738998 TGGCTGAACCGGCATGGG 62.739 66.667 0.00 0.00 44.64 4.00
740 764 4.424711 GGCTGAACCGGCATGGGA 62.425 66.667 0.00 0.00 44.64 4.37
741 765 2.361104 GCTGAACCGGCATGGGAA 60.361 61.111 0.00 0.00 44.64 3.97
742 766 1.754234 GCTGAACCGGCATGGGAAT 60.754 57.895 0.00 0.00 44.64 3.01
743 767 0.465460 GCTGAACCGGCATGGGAATA 60.465 55.000 0.00 0.00 44.64 1.75
744 768 2.021723 GCTGAACCGGCATGGGAATAA 61.022 52.381 0.00 0.00 44.64 1.40
745 769 1.676006 CTGAACCGGCATGGGAATAAC 59.324 52.381 0.00 0.00 44.64 1.89
746 770 1.283613 TGAACCGGCATGGGAATAACT 59.716 47.619 0.00 0.00 44.64 2.24
747 771 1.676006 GAACCGGCATGGGAATAACTG 59.324 52.381 0.00 0.00 44.64 3.16
748 772 0.916086 ACCGGCATGGGAATAACTGA 59.084 50.000 0.00 0.00 44.64 3.41
749 773 1.283613 ACCGGCATGGGAATAACTGAA 59.716 47.619 0.00 0.00 44.64 3.02
750 774 2.091885 ACCGGCATGGGAATAACTGAAT 60.092 45.455 0.00 0.00 44.64 2.57
751 775 3.137544 ACCGGCATGGGAATAACTGAATA 59.862 43.478 0.00 0.00 44.64 1.75
752 776 4.202567 ACCGGCATGGGAATAACTGAATAT 60.203 41.667 0.00 0.00 44.64 1.28
753 777 5.013704 ACCGGCATGGGAATAACTGAATATA 59.986 40.000 0.00 0.00 44.64 0.86
754 778 5.943416 CCGGCATGGGAATAACTGAATATAA 59.057 40.000 0.00 0.00 0.00 0.98
755 779 6.094048 CCGGCATGGGAATAACTGAATATAAG 59.906 42.308 0.00 0.00 0.00 1.73
756 780 6.655003 CGGCATGGGAATAACTGAATATAAGT 59.345 38.462 0.00 0.00 0.00 2.24
757 781 7.361201 CGGCATGGGAATAACTGAATATAAGTG 60.361 40.741 0.00 0.00 0.00 3.16
758 782 7.665559 GGCATGGGAATAACTGAATATAAGTGA 59.334 37.037 0.00 0.00 0.00 3.41
759 783 8.507249 GCATGGGAATAACTGAATATAAGTGAC 58.493 37.037 0.00 0.00 0.00 3.67
760 784 9.559732 CATGGGAATAACTGAATATAAGTGACA 57.440 33.333 0.00 0.00 0.00 3.58
761 785 9.784531 ATGGGAATAACTGAATATAAGTGACAG 57.215 33.333 0.00 0.00 35.14 3.51
762 786 8.768397 TGGGAATAACTGAATATAAGTGACAGT 58.232 33.333 0.00 0.00 42.40 3.55
767 791 9.973450 ATAACTGAATATAAGTGACAGTAGCAG 57.027 33.333 0.00 0.00 40.23 4.24
768 792 7.411486 ACTGAATATAAGTGACAGTAGCAGT 57.589 36.000 0.00 0.00 39.52 4.40
769 793 7.484975 ACTGAATATAAGTGACAGTAGCAGTC 58.515 38.462 0.00 0.00 39.52 3.51
770 794 7.340743 ACTGAATATAAGTGACAGTAGCAGTCT 59.659 37.037 0.00 0.00 39.52 3.24
771 795 7.484140 TGAATATAAGTGACAGTAGCAGTCTG 58.516 38.462 0.00 0.00 36.94 3.51
772 796 4.727507 ATAAGTGACAGTAGCAGTCTGG 57.272 45.455 1.14 0.00 37.25 3.86
773 797 1.261480 AGTGACAGTAGCAGTCTGGG 58.739 55.000 1.14 0.00 37.25 4.45
774 798 1.203063 AGTGACAGTAGCAGTCTGGGA 60.203 52.381 1.14 0.00 37.25 4.37
775 799 1.067495 GTGACAGTAGCAGTCTGGGAC 60.067 57.143 1.14 0.00 37.25 4.46
776 800 1.203063 TGACAGTAGCAGTCTGGGACT 60.203 52.381 1.14 0.00 44.44 3.85
972 1002 2.125391 GCAGCATCAGGACGAGCA 60.125 61.111 0.00 0.00 0.00 4.26
1004 1035 3.657059 GCATGATGCGCCGATGCT 61.657 61.111 21.58 0.00 39.54 3.79
1007 1038 4.843719 TGATGCGCCGATGCTGCT 62.844 61.111 4.18 0.00 37.71 4.24
1044 1081 2.223923 GGACGAAGAGGGACATGATGAG 60.224 54.545 0.00 0.00 0.00 2.90
1045 1082 1.137872 ACGAAGAGGGACATGATGAGC 59.862 52.381 0.00 0.00 0.00 4.26
1046 1083 1.539929 CGAAGAGGGACATGATGAGCC 60.540 57.143 0.00 0.00 0.00 4.70
1083 1123 2.579738 GAAGAGGGGCAGGACGAC 59.420 66.667 0.00 0.00 0.00 4.34
1171 1229 1.826921 GAGGTGGTCGCCGGAGATA 60.827 63.158 12.23 0.52 0.00 1.98
1182 1240 1.177401 CCGGAGATATCGATGCTGGA 58.823 55.000 8.54 0.00 0.00 3.86
1254 1312 2.282958 TCGGAGGTGAGGCTCGTT 60.283 61.111 10.42 0.00 0.00 3.85
1268 1326 3.763897 AGGCTCGTTAAAATTCATGGCTT 59.236 39.130 0.00 0.00 0.00 4.35
1506 1692 6.281190 TGGAAGTAGGATGAGATTCCTAGA 57.719 41.667 0.48 0.00 46.57 2.43
1534 1720 1.904287 TCCGTTTCTGGGTTGGAATG 58.096 50.000 0.00 0.00 0.00 2.67
1545 1731 1.745653 GGTTGGAATGAGCCAGTAAGC 59.254 52.381 0.00 0.00 39.52 3.09
1593 1793 8.041323 TCCTACTCAACAATTAAGCTTCTTAGG 58.959 37.037 0.00 0.60 0.00 2.69
1594 1794 7.281100 CCTACTCAACAATTAAGCTTCTTAGGG 59.719 40.741 0.00 0.00 0.00 3.53
1595 1795 5.946377 ACTCAACAATTAAGCTTCTTAGGGG 59.054 40.000 0.00 0.00 0.00 4.79
1596 1796 5.261216 TCAACAATTAAGCTTCTTAGGGGG 58.739 41.667 0.00 0.00 0.00 5.40
1597 1797 4.948062 ACAATTAAGCTTCTTAGGGGGT 57.052 40.909 0.00 0.00 0.00 4.95
1598 1798 4.600062 ACAATTAAGCTTCTTAGGGGGTG 58.400 43.478 0.00 0.00 0.00 4.61
1599 1799 4.044191 ACAATTAAGCTTCTTAGGGGGTGT 59.956 41.667 0.00 0.00 0.00 4.16
1600 1800 4.948062 ATTAAGCTTCTTAGGGGGTGTT 57.052 40.909 0.00 0.00 0.00 3.32
1601 1801 4.734843 TTAAGCTTCTTAGGGGGTGTTT 57.265 40.909 0.00 0.00 0.00 2.83
1602 1802 2.586648 AGCTTCTTAGGGGGTGTTTG 57.413 50.000 0.00 0.00 0.00 2.93
1603 1803 1.075536 AGCTTCTTAGGGGGTGTTTGG 59.924 52.381 0.00 0.00 0.00 3.28
1604 1804 1.203013 GCTTCTTAGGGGGTGTTTGGT 60.203 52.381 0.00 0.00 0.00 3.67
1605 1805 2.755208 GCTTCTTAGGGGGTGTTTGGTT 60.755 50.000 0.00 0.00 0.00 3.67
1606 1806 2.963599 TCTTAGGGGGTGTTTGGTTC 57.036 50.000 0.00 0.00 0.00 3.62
1607 1807 2.136863 TCTTAGGGGGTGTTTGGTTCA 58.863 47.619 0.00 0.00 0.00 3.18
1608 1808 2.107552 TCTTAGGGGGTGTTTGGTTCAG 59.892 50.000 0.00 0.00 0.00 3.02
1609 1809 0.774908 TAGGGGGTGTTTGGTTCAGG 59.225 55.000 0.00 0.00 0.00 3.86
1610 1810 1.533033 GGGGGTGTTTGGTTCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
1611 1811 1.539665 GGGGTGTTTGGTTCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
1612 1812 0.826256 GGGGTGTTTGGTTCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
1613 1813 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
1614 1814 1.411074 GGGTGTTTGGTTCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
1615 1815 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
1616 1816 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
1617 1817 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
1618 1818 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
1619 1819 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
1620 1820 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
1621 1821 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
1636 1836 9.503399 GACTTTTTAGTCCCAGAGAATAGAAAA 57.497 33.333 0.00 0.00 31.30 2.29
1637 1837 9.862149 ACTTTTTAGTCCCAGAGAATAGAAAAA 57.138 29.630 0.00 0.00 31.30 1.94
1639 1839 9.862149 TTTTTAGTCCCAGAGAATAGAAAAAGT 57.138 29.630 0.00 0.00 29.35 2.66
1640 1840 9.503399 TTTTAGTCCCAGAGAATAGAAAAAGTC 57.497 33.333 0.00 0.00 0.00 3.01
1641 1841 6.056090 AGTCCCAGAGAATAGAAAAAGTCC 57.944 41.667 0.00 0.00 0.00 3.85
1642 1842 5.045505 AGTCCCAGAGAATAGAAAAAGTCCC 60.046 44.000 0.00 0.00 0.00 4.46
1643 1843 5.045505 GTCCCAGAGAATAGAAAAAGTCCCT 60.046 44.000 0.00 0.00 0.00 4.20
1644 1844 6.156429 GTCCCAGAGAATAGAAAAAGTCCCTA 59.844 42.308 0.00 0.00 0.00 3.53
1645 1845 6.733807 TCCCAGAGAATAGAAAAAGTCCCTAA 59.266 38.462 0.00 0.00 0.00 2.69
1646 1846 7.238933 TCCCAGAGAATAGAAAAAGTCCCTAAA 59.761 37.037 0.00 0.00 0.00 1.85
1647 1847 7.888546 CCCAGAGAATAGAAAAAGTCCCTAAAA 59.111 37.037 0.00 0.00 0.00 1.52
1648 1848 9.297037 CCAGAGAATAGAAAAAGTCCCTAAAAA 57.703 33.333 0.00 0.00 0.00 1.94
1652 1852 9.298250 AGAATAGAAAAAGTCCCTAAAAAGTCC 57.702 33.333 0.00 0.00 0.00 3.85
1653 1853 8.418597 AATAGAAAAAGTCCCTAAAAAGTCCC 57.581 34.615 0.00 0.00 0.00 4.46
1654 1854 6.027025 AGAAAAAGTCCCTAAAAAGTCCCT 57.973 37.500 0.00 0.00 0.00 4.20
1655 1855 7.157947 AGAAAAAGTCCCTAAAAAGTCCCTA 57.842 36.000 0.00 0.00 0.00 3.53
1656 1856 7.232188 AGAAAAAGTCCCTAAAAAGTCCCTAG 58.768 38.462 0.00 0.00 0.00 3.02
1657 1857 5.516059 AAAGTCCCTAAAAAGTCCCTAGG 57.484 43.478 0.06 0.06 33.30 3.02
1658 1858 4.431158 AGTCCCTAAAAAGTCCCTAGGA 57.569 45.455 11.48 0.00 35.17 2.94
1659 1859 4.771338 AGTCCCTAAAAAGTCCCTAGGAA 58.229 43.478 11.48 0.00 35.17 3.36
1660 1860 4.535294 AGTCCCTAAAAAGTCCCTAGGAAC 59.465 45.833 11.48 0.00 35.17 3.62
1661 1861 3.848377 TCCCTAAAAAGTCCCTAGGAACC 59.152 47.826 11.48 0.00 35.17 3.62
1662 1862 3.590182 CCCTAAAAAGTCCCTAGGAACCA 59.410 47.826 11.48 0.00 35.17 3.67
1663 1863 4.043686 CCCTAAAAAGTCCCTAGGAACCAA 59.956 45.833 11.48 0.00 35.17 3.67
1664 1864 5.458508 CCCTAAAAAGTCCCTAGGAACCAAA 60.459 44.000 11.48 0.00 35.17 3.28
1665 1865 5.475909 CCTAAAAAGTCCCTAGGAACCAAAC 59.524 44.000 11.48 0.00 35.17 2.93
1666 1866 4.529716 AAAAGTCCCTAGGAACCAAACA 57.470 40.909 11.48 0.00 31.38 2.83
1667 1867 3.790089 AAGTCCCTAGGAACCAAACAG 57.210 47.619 11.48 0.00 31.38 3.16
1668 1868 1.985895 AGTCCCTAGGAACCAAACAGG 59.014 52.381 11.48 0.00 45.67 4.00
1669 1869 1.982958 GTCCCTAGGAACCAAACAGGA 59.017 52.381 11.48 0.00 42.07 3.86
1670 1870 2.027100 GTCCCTAGGAACCAAACAGGAG 60.027 54.545 11.48 0.00 42.07 3.69
1671 1871 1.282157 CCCTAGGAACCAAACAGGAGG 59.718 57.143 11.48 0.00 41.22 4.30
1672 1872 1.282157 CCTAGGAACCAAACAGGAGGG 59.718 57.143 1.05 0.00 41.22 4.30
1673 1873 2.266279 CTAGGAACCAAACAGGAGGGA 58.734 52.381 0.00 0.00 41.22 4.20
1674 1874 0.771755 AGGAACCAAACAGGAGGGAC 59.228 55.000 0.00 0.00 41.22 4.46
1676 1876 1.145119 GGAACCAAACAGGAGGGACTT 59.855 52.381 0.00 0.00 41.55 3.01
1677 1877 2.424379 GGAACCAAACAGGAGGGACTTT 60.424 50.000 0.00 0.00 41.55 2.66
1678 1878 3.296854 GAACCAAACAGGAGGGACTTTT 58.703 45.455 0.00 0.00 41.55 2.27
1679 1879 3.398318 ACCAAACAGGAGGGACTTTTT 57.602 42.857 0.00 0.00 41.55 1.94
1680 1880 3.296854 ACCAAACAGGAGGGACTTTTTC 58.703 45.455 0.00 0.00 41.55 2.29
1681 1881 3.052869 ACCAAACAGGAGGGACTTTTTCT 60.053 43.478 0.00 0.00 41.55 2.52
1682 1882 4.167307 ACCAAACAGGAGGGACTTTTTCTA 59.833 41.667 0.00 0.00 41.55 2.10
1683 1883 4.519350 CCAAACAGGAGGGACTTTTTCTAC 59.481 45.833 0.00 0.00 41.55 2.59
1684 1884 5.130350 CAAACAGGAGGGACTTTTTCTACA 58.870 41.667 0.00 0.00 41.55 2.74
1685 1885 4.625607 ACAGGAGGGACTTTTTCTACAG 57.374 45.455 0.00 0.00 41.55 2.74
1686 1886 3.328050 ACAGGAGGGACTTTTTCTACAGG 59.672 47.826 0.00 0.00 41.55 4.00
1687 1887 2.913617 AGGAGGGACTTTTTCTACAGGG 59.086 50.000 0.00 0.00 41.55 4.45
1688 1888 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
1689 1889 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
1690 1890 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
1691 1891 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
1692 1892 4.778427 AGGGACTTTTTCTACAGGGACTAG 59.222 45.833 0.00 0.00 28.08 2.57
1693 1893 4.776308 GGGACTTTTTCTACAGGGACTAGA 59.224 45.833 0.00 0.00 36.02 2.43
1694 1894 5.247792 GGGACTTTTTCTACAGGGACTAGAA 59.752 44.000 0.00 0.00 36.02 2.10
1695 1895 6.239800 GGGACTTTTTCTACAGGGACTAGAAA 60.240 42.308 0.00 0.00 38.08 2.52
1696 1896 7.222161 GGACTTTTTCTACAGGGACTAGAAAA 58.778 38.462 0.00 8.58 43.60 2.29
1700 1900 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
1701 1901 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
1702 1902 6.837471 TCTACAGGGACTAGAAAAAGACTC 57.163 41.667 0.00 0.00 36.02 3.36
1703 1903 6.553857 TCTACAGGGACTAGAAAAAGACTCT 58.446 40.000 0.00 0.00 36.02 3.24
1704 1904 7.696981 TCTACAGGGACTAGAAAAAGACTCTA 58.303 38.462 0.00 0.00 36.02 2.43
1705 1905 6.593268 ACAGGGACTAGAAAAAGACTCTAC 57.407 41.667 0.00 0.00 36.02 2.59
1706 1906 6.316513 ACAGGGACTAGAAAAAGACTCTACT 58.683 40.000 0.00 0.00 36.02 2.57
1707 1907 6.209788 ACAGGGACTAGAAAAAGACTCTACTG 59.790 42.308 0.00 0.00 36.02 2.74
1708 1908 6.434652 CAGGGACTAGAAAAAGACTCTACTGA 59.565 42.308 0.00 0.00 36.02 3.41
1709 1909 7.011382 AGGGACTAGAAAAAGACTCTACTGAA 58.989 38.462 0.00 0.00 36.02 3.02
1710 1910 7.177744 AGGGACTAGAAAAAGACTCTACTGAAG 59.822 40.741 0.00 0.00 36.02 3.02
1711 1911 7.177041 GGGACTAGAAAAAGACTCTACTGAAGA 59.823 40.741 0.00 0.00 0.00 2.87
1766 1966 4.828072 GTCCTAGGACTTCTGAACCAAT 57.172 45.455 31.12 0.00 41.57 3.16
1767 1967 4.760878 GTCCTAGGACTTCTGAACCAATC 58.239 47.826 31.12 2.66 41.57 2.67
1768 1968 4.223032 GTCCTAGGACTTCTGAACCAATCA 59.777 45.833 31.12 0.00 41.57 2.57
1769 1969 4.223032 TCCTAGGACTTCTGAACCAATCAC 59.777 45.833 7.62 0.00 33.47 3.06
1770 1970 3.425162 AGGACTTCTGAACCAATCACC 57.575 47.619 0.58 0.00 33.47 4.02
1771 1971 2.040412 AGGACTTCTGAACCAATCACCC 59.960 50.000 0.58 0.00 33.47 4.61
1772 1972 2.437413 GACTTCTGAACCAATCACCCC 58.563 52.381 0.00 0.00 33.47 4.95
1773 1973 1.075536 ACTTCTGAACCAATCACCCCC 59.924 52.381 0.00 0.00 33.47 5.40
1774 1974 1.355720 CTTCTGAACCAATCACCCCCT 59.644 52.381 0.00 0.00 33.47 4.79
1775 1975 1.455822 TCTGAACCAATCACCCCCTT 58.544 50.000 0.00 0.00 33.47 3.95
1776 1976 1.075374 TCTGAACCAATCACCCCCTTG 59.925 52.381 0.00 0.00 33.47 3.61
1777 1977 0.114168 TGAACCAATCACCCCCTTGG 59.886 55.000 0.00 0.00 46.03 3.61
1861 4265 6.715264 AGTTTAATTCCTGAGTTTTCACGGAT 59.285 34.615 0.00 0.00 33.53 4.18
1888 4294 2.161211 GCTGAGTGCTTTGATTCCTGAC 59.839 50.000 0.00 0.00 38.95 3.51
1913 4319 4.522789 AGAATTGATTAACCACACCACACC 59.477 41.667 0.00 0.00 0.00 4.16
1914 4320 3.298686 TTGATTAACCACACCACACCA 57.701 42.857 0.00 0.00 0.00 4.17
1915 4321 2.577700 TGATTAACCACACCACACCAC 58.422 47.619 0.00 0.00 0.00 4.16
1916 4322 2.092375 TGATTAACCACACCACACCACA 60.092 45.455 0.00 0.00 0.00 4.17
1917 4323 1.752683 TTAACCACACCACACCACAC 58.247 50.000 0.00 0.00 0.00 3.82
2027 4641 3.586470 TCATCTAGACCTCTGAGTCCC 57.414 52.381 3.66 0.00 37.49 4.46
2156 4774 5.576895 GCTGAAGCAGGTAAATTTCTCATC 58.423 41.667 0.00 0.00 41.59 2.92
2619 5258 7.357471 AGGCTTTCAAATTCTCCAGGTTATAT 58.643 34.615 0.00 0.00 0.00 0.86
2788 5770 9.161629 TCACATGCTCTATTTTCTTCGAATAAA 57.838 29.630 0.00 0.70 0.00 1.40
2847 5832 9.742144 TGTACTAAGTAAGATTAATTTTGGCCA 57.258 29.630 0.00 0.00 0.00 5.36
2904 5893 2.330372 CGCATGCAGGCTTCACTGT 61.330 57.895 22.31 0.00 40.59 3.55
2993 5982 4.133820 TGACCGTTGATGTCAATTTCAGT 58.866 39.130 0.00 0.00 39.66 3.41
3197 6188 6.397272 TGTTGGATGCTTTAATGAATCAACC 58.603 36.000 10.64 0.00 0.00 3.77
3302 6296 6.472016 TCAGGCTTCAGAATGTTGTTACATA 58.528 36.000 0.00 0.00 44.14 2.29
3437 6454 1.669115 CTCACAGGGCAACACTCCG 60.669 63.158 0.00 0.00 39.74 4.63
3520 6540 0.033796 CACCACCCCTCAGCATCATT 60.034 55.000 0.00 0.00 0.00 2.57
3590 6610 3.135530 GGTGGCTCTTCCTCTGTATTCAT 59.864 47.826 0.00 0.00 35.26 2.57
3601 6621 4.219507 CCTCTGTATTCATGGACTATCGCT 59.780 45.833 0.00 0.00 0.00 4.93
3758 6786 2.032071 CGGGGACACCAAGGTCAC 59.968 66.667 0.00 0.00 40.54 3.67
4095 7248 3.541632 TTGACACACAAGGAGGAAACTC 58.458 45.455 0.00 0.00 44.28 3.01
4140 7293 4.201608 GCAACAAAATGATGTTACATGCCG 60.202 41.667 1.24 0.00 41.44 5.69
4228 7389 3.924686 TCTTTCTTAAAGATCGTGCGTCC 59.075 43.478 0.00 0.00 42.31 4.79
4622 7900 1.901591 ATCTGTCACCAGCAACAAGG 58.098 50.000 0.00 0.00 38.66 3.61
4640 7921 8.117988 GCAACAAGGCATGATTTGTATAAATTG 58.882 33.333 13.50 9.32 36.66 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
551 573 2.358247 GGAGTGAGCCGGCGAAAA 60.358 61.111 23.20 4.88 0.00 2.29
566 588 3.969250 CTAAAAGCGCCGCCTGGGA 62.969 63.158 4.98 0.00 38.47 4.37
620 644 5.072600 TCCCTGTTTTACTTCCTCTGCTTTA 59.927 40.000 0.00 0.00 0.00 1.85
621 645 4.141251 TCCCTGTTTTACTTCCTCTGCTTT 60.141 41.667 0.00 0.00 0.00 3.51
624 648 3.008049 TCTCCCTGTTTTACTTCCTCTGC 59.992 47.826 0.00 0.00 0.00 4.26
625 649 4.284746 ACTCTCCCTGTTTTACTTCCTCTG 59.715 45.833 0.00 0.00 0.00 3.35
626 650 4.284746 CACTCTCCCTGTTTTACTTCCTCT 59.715 45.833 0.00 0.00 0.00 3.69
627 651 4.563786 CCACTCTCCCTGTTTTACTTCCTC 60.564 50.000 0.00 0.00 0.00 3.71
628 652 3.328050 CCACTCTCCCTGTTTTACTTCCT 59.672 47.826 0.00 0.00 0.00 3.36
629 653 3.326880 TCCACTCTCCCTGTTTTACTTCC 59.673 47.826 0.00 0.00 0.00 3.46
630 654 4.316645 GTCCACTCTCCCTGTTTTACTTC 58.683 47.826 0.00 0.00 0.00 3.01
631 655 3.244112 CGTCCACTCTCCCTGTTTTACTT 60.244 47.826 0.00 0.00 0.00 2.24
632 656 2.299297 CGTCCACTCTCCCTGTTTTACT 59.701 50.000 0.00 0.00 0.00 2.24
633 657 2.612221 CCGTCCACTCTCCCTGTTTTAC 60.612 54.545 0.00 0.00 0.00 2.01
634 658 1.621814 CCGTCCACTCTCCCTGTTTTA 59.378 52.381 0.00 0.00 0.00 1.52
635 659 0.396811 CCGTCCACTCTCCCTGTTTT 59.603 55.000 0.00 0.00 0.00 2.43
636 660 0.763223 ACCGTCCACTCTCCCTGTTT 60.763 55.000 0.00 0.00 0.00 2.83
637 661 0.113776 TACCGTCCACTCTCCCTGTT 59.886 55.000 0.00 0.00 0.00 3.16
638 662 0.113776 TTACCGTCCACTCTCCCTGT 59.886 55.000 0.00 0.00 0.00 4.00
639 663 1.204941 CTTTACCGTCCACTCTCCCTG 59.795 57.143 0.00 0.00 0.00 4.45
640 664 1.203149 ACTTTACCGTCCACTCTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
641 665 1.264295 ACTTTACCGTCCACTCTCCC 58.736 55.000 0.00 0.00 0.00 4.30
642 666 2.159268 GCTACTTTACCGTCCACTCTCC 60.159 54.545 0.00 0.00 0.00 3.71
643 667 2.754002 AGCTACTTTACCGTCCACTCTC 59.246 50.000 0.00 0.00 0.00 3.20
644 668 2.492484 CAGCTACTTTACCGTCCACTCT 59.508 50.000 0.00 0.00 0.00 3.24
645 669 2.230750 ACAGCTACTTTACCGTCCACTC 59.769 50.000 0.00 0.00 0.00 3.51
646 670 2.245582 ACAGCTACTTTACCGTCCACT 58.754 47.619 0.00 0.00 0.00 4.00
647 671 2.735134 CAACAGCTACTTTACCGTCCAC 59.265 50.000 0.00 0.00 0.00 4.02
648 672 2.868839 GCAACAGCTACTTTACCGTCCA 60.869 50.000 0.00 0.00 0.00 4.02
649 673 1.730612 GCAACAGCTACTTTACCGTCC 59.269 52.381 0.00 0.00 0.00 4.79
650 674 1.389106 CGCAACAGCTACTTTACCGTC 59.611 52.381 0.00 0.00 0.00 4.79
651 675 1.000060 TCGCAACAGCTACTTTACCGT 60.000 47.619 0.00 0.00 0.00 4.83
652 676 1.705256 TCGCAACAGCTACTTTACCG 58.295 50.000 0.00 0.00 0.00 4.02
653 677 2.608090 GGATCGCAACAGCTACTTTACC 59.392 50.000 0.00 0.00 0.00 2.85
654 678 3.522553 AGGATCGCAACAGCTACTTTAC 58.477 45.455 0.00 0.00 0.00 2.01
655 679 3.782046 GAGGATCGCAACAGCTACTTTA 58.218 45.455 0.00 0.00 0.00 1.85
656 680 2.622436 GAGGATCGCAACAGCTACTTT 58.378 47.619 0.00 0.00 0.00 2.66
657 681 2.301577 GAGGATCGCAACAGCTACTT 57.698 50.000 0.00 0.00 0.00 2.24
670 694 2.340443 GGATGGACGGCGAGGATC 59.660 66.667 16.62 10.89 0.00 3.36
671 695 3.234730 GGGATGGACGGCGAGGAT 61.235 66.667 16.62 0.72 0.00 3.24
677 701 3.757248 AAGATGCGGGATGGACGGC 62.757 63.158 0.00 0.00 37.23 5.68
678 702 1.595382 GAAGATGCGGGATGGACGG 60.595 63.158 0.00 0.00 0.00 4.79
679 703 0.877649 CTGAAGATGCGGGATGGACG 60.878 60.000 0.00 0.00 0.00 4.79
680 704 0.179000 ACTGAAGATGCGGGATGGAC 59.821 55.000 0.00 0.00 0.00 4.02
681 705 0.465705 GACTGAAGATGCGGGATGGA 59.534 55.000 0.00 0.00 0.00 3.41
682 706 0.467384 AGACTGAAGATGCGGGATGG 59.533 55.000 0.00 0.00 0.00 3.51
683 707 1.938577 CAAGACTGAAGATGCGGGATG 59.061 52.381 0.00 0.00 0.00 3.51
684 708 1.833630 TCAAGACTGAAGATGCGGGAT 59.166 47.619 0.00 0.00 0.00 3.85
685 709 1.066858 GTCAAGACTGAAGATGCGGGA 60.067 52.381 0.00 0.00 31.88 5.14
686 710 1.363744 GTCAAGACTGAAGATGCGGG 58.636 55.000 0.00 0.00 31.88 6.13
687 711 1.363744 GGTCAAGACTGAAGATGCGG 58.636 55.000 0.00 0.00 31.88 5.69
688 712 0.994995 CGGTCAAGACTGAAGATGCG 59.005 55.000 2.88 0.00 40.06 4.73
689 713 2.086054 ACGGTCAAGACTGAAGATGC 57.914 50.000 15.51 0.00 40.06 3.91
690 714 3.444034 TCCTACGGTCAAGACTGAAGATG 59.556 47.826 15.51 0.59 40.06 2.90
691 715 3.698289 TCCTACGGTCAAGACTGAAGAT 58.302 45.455 15.51 0.00 40.06 2.40
692 716 3.150458 TCCTACGGTCAAGACTGAAGA 57.850 47.619 15.51 6.26 40.06 2.87
693 717 3.697045 AGATCCTACGGTCAAGACTGAAG 59.303 47.826 15.51 4.19 40.06 3.02
694 718 3.698289 AGATCCTACGGTCAAGACTGAA 58.302 45.455 15.51 0.00 40.06 3.02
695 719 3.367646 AGATCCTACGGTCAAGACTGA 57.632 47.619 15.51 0.00 40.06 3.41
696 720 3.444034 TGAAGATCCTACGGTCAAGACTG 59.556 47.826 7.47 7.47 43.20 3.51
697 721 3.698289 TGAAGATCCTACGGTCAAGACT 58.302 45.455 0.00 0.00 0.00 3.24
698 722 4.657436 ATGAAGATCCTACGGTCAAGAC 57.343 45.455 0.00 0.00 0.00 3.01
699 723 4.466370 ACAATGAAGATCCTACGGTCAAGA 59.534 41.667 0.00 0.00 0.00 3.02
700 724 4.568359 CACAATGAAGATCCTACGGTCAAG 59.432 45.833 0.00 0.00 0.00 3.02
701 725 4.503910 CACAATGAAGATCCTACGGTCAA 58.496 43.478 0.00 0.00 0.00 3.18
702 726 3.118775 CCACAATGAAGATCCTACGGTCA 60.119 47.826 0.00 0.00 0.00 4.02
703 727 3.458189 CCACAATGAAGATCCTACGGTC 58.542 50.000 0.00 0.00 0.00 4.79
704 728 2.420129 GCCACAATGAAGATCCTACGGT 60.420 50.000 0.00 0.00 0.00 4.83
705 729 2.158900 AGCCACAATGAAGATCCTACGG 60.159 50.000 0.00 0.00 0.00 4.02
706 730 2.868583 CAGCCACAATGAAGATCCTACG 59.131 50.000 0.00 0.00 0.00 3.51
707 731 4.142609 TCAGCCACAATGAAGATCCTAC 57.857 45.455 0.00 0.00 0.00 3.18
708 732 4.517285 GTTCAGCCACAATGAAGATCCTA 58.483 43.478 0.00 0.00 37.35 2.94
709 733 3.350833 GTTCAGCCACAATGAAGATCCT 58.649 45.455 0.00 0.00 37.35 3.24
710 734 2.424956 GGTTCAGCCACAATGAAGATCC 59.575 50.000 0.00 0.00 37.35 3.36
711 735 2.096496 CGGTTCAGCCACAATGAAGATC 59.904 50.000 0.00 0.00 37.35 2.75
712 736 2.086869 CGGTTCAGCCACAATGAAGAT 58.913 47.619 0.00 0.00 37.35 2.40
713 737 1.522668 CGGTTCAGCCACAATGAAGA 58.477 50.000 0.00 0.00 37.35 2.87
714 738 0.523072 CCGGTTCAGCCACAATGAAG 59.477 55.000 0.00 0.00 37.35 3.02
715 739 1.523154 GCCGGTTCAGCCACAATGAA 61.523 55.000 1.90 0.00 36.97 2.57
716 740 1.971167 GCCGGTTCAGCCACAATGA 60.971 57.895 1.90 0.00 36.97 2.57
717 741 1.597797 ATGCCGGTTCAGCCACAATG 61.598 55.000 1.90 0.00 36.97 2.82
718 742 1.304381 ATGCCGGTTCAGCCACAAT 60.304 52.632 1.90 0.00 36.97 2.71
719 743 2.115052 ATGCCGGTTCAGCCACAA 59.885 55.556 1.90 0.00 36.97 3.33
720 744 2.672651 CATGCCGGTTCAGCCACA 60.673 61.111 1.90 0.00 36.97 4.17
721 745 3.443045 CCATGCCGGTTCAGCCAC 61.443 66.667 1.90 0.00 36.97 5.01
722 746 4.738998 CCCATGCCGGTTCAGCCA 62.739 66.667 1.90 0.00 36.97 4.75
723 747 3.808692 TATTCCCATGCCGGTTCAGCC 62.809 57.143 1.90 0.00 0.00 4.85
724 748 0.465460 TATTCCCATGCCGGTTCAGC 60.465 55.000 1.90 0.00 0.00 4.26
725 749 1.676006 GTTATTCCCATGCCGGTTCAG 59.324 52.381 1.90 0.00 0.00 3.02
726 750 1.283613 AGTTATTCCCATGCCGGTTCA 59.716 47.619 1.90 0.00 0.00 3.18
727 751 1.676006 CAGTTATTCCCATGCCGGTTC 59.324 52.381 1.90 0.00 0.00 3.62
728 752 1.283613 TCAGTTATTCCCATGCCGGTT 59.716 47.619 1.90 0.00 0.00 4.44
729 753 0.916086 TCAGTTATTCCCATGCCGGT 59.084 50.000 1.90 0.00 0.00 5.28
730 754 2.051334 TTCAGTTATTCCCATGCCGG 57.949 50.000 0.00 0.00 0.00 6.13
731 755 6.655003 ACTTATATTCAGTTATTCCCATGCCG 59.345 38.462 0.00 0.00 0.00 5.69
732 756 7.665559 TCACTTATATTCAGTTATTCCCATGCC 59.334 37.037 0.00 0.00 0.00 4.40
733 757 8.507249 GTCACTTATATTCAGTTATTCCCATGC 58.493 37.037 0.00 0.00 0.00 4.06
734 758 9.559732 TGTCACTTATATTCAGTTATTCCCATG 57.440 33.333 0.00 0.00 0.00 3.66
735 759 9.784531 CTGTCACTTATATTCAGTTATTCCCAT 57.215 33.333 0.00 0.00 0.00 4.00
736 760 8.768397 ACTGTCACTTATATTCAGTTATTCCCA 58.232 33.333 0.00 0.00 36.17 4.37
741 765 9.973450 CTGCTACTGTCACTTATATTCAGTTAT 57.027 33.333 0.00 0.00 39.54 1.89
742 766 8.967918 ACTGCTACTGTCACTTATATTCAGTTA 58.032 33.333 0.00 0.00 39.54 2.24
743 767 7.841956 ACTGCTACTGTCACTTATATTCAGTT 58.158 34.615 0.00 0.00 39.54 3.16
744 768 7.340743 AGACTGCTACTGTCACTTATATTCAGT 59.659 37.037 7.26 0.00 41.32 3.41
745 769 7.647318 CAGACTGCTACTGTCACTTATATTCAG 59.353 40.741 7.26 0.00 35.30 3.02
746 770 7.416777 CCAGACTGCTACTGTCACTTATATTCA 60.417 40.741 0.00 0.00 35.30 2.57
747 771 6.920758 CCAGACTGCTACTGTCACTTATATTC 59.079 42.308 0.00 0.00 35.30 1.75
748 772 6.183360 CCCAGACTGCTACTGTCACTTATATT 60.183 42.308 0.00 0.00 35.30 1.28
749 773 5.303078 CCCAGACTGCTACTGTCACTTATAT 59.697 44.000 0.00 0.00 35.30 0.86
750 774 4.645136 CCCAGACTGCTACTGTCACTTATA 59.355 45.833 0.00 0.00 35.30 0.98
751 775 3.449018 CCCAGACTGCTACTGTCACTTAT 59.551 47.826 0.00 0.00 35.30 1.73
752 776 2.826128 CCCAGACTGCTACTGTCACTTA 59.174 50.000 0.00 0.00 35.30 2.24
753 777 1.620819 CCCAGACTGCTACTGTCACTT 59.379 52.381 0.00 0.00 35.30 3.16
754 778 1.203063 TCCCAGACTGCTACTGTCACT 60.203 52.381 0.00 0.00 35.30 3.41
755 779 1.067495 GTCCCAGACTGCTACTGTCAC 60.067 57.143 0.00 0.00 35.30 3.67
756 780 1.203063 AGTCCCAGACTGCTACTGTCA 60.203 52.381 7.03 0.00 41.76 3.58
757 781 1.551452 AGTCCCAGACTGCTACTGTC 58.449 55.000 7.03 0.00 41.76 3.51
758 782 3.776196 AGTCCCAGACTGCTACTGT 57.224 52.632 7.03 0.00 41.76 3.55
766 790 1.915769 GGGCTGTCAGTCCCAGACT 60.916 63.158 21.07 0.00 44.44 3.24
767 791 2.665603 GGGCTGTCAGTCCCAGAC 59.334 66.667 21.07 0.00 42.18 3.51
772 796 4.416738 GGCTGGGGCTGTCAGTCC 62.417 72.222 15.65 15.65 39.92 3.85
773 797 4.416738 GGGCTGGGGCTGTCAGTC 62.417 72.222 0.93 0.00 38.73 3.51
775 799 4.729918 GTGGGCTGGGGCTGTCAG 62.730 72.222 0.00 0.00 38.73 3.51
972 1002 3.344511 ATGCCCTCCTCCTCCTGCT 62.345 63.158 0.00 0.00 0.00 4.24
1026 1063 1.539929 GGCTCATCATGTCCCTCTTCG 60.540 57.143 0.00 0.00 0.00 3.79
1083 1123 0.392729 CCTCTTCTCCTTGCTGCTGG 60.393 60.000 0.00 3.48 0.00 4.85
1182 1240 0.038744 CTTCAGGGTCACCATTGCCT 59.961 55.000 0.00 0.00 40.13 4.75
1254 1312 7.013655 GGAAGCTATCAGAAGCCATGAATTTTA 59.986 37.037 0.00 0.00 43.86 1.52
1268 1326 6.552725 ACATAGATCAACAGGAAGCTATCAGA 59.447 38.462 0.00 0.00 29.70 3.27
1506 1692 2.372172 ACCCAGAAACGGAAGAGACAAT 59.628 45.455 0.00 0.00 0.00 2.71
1534 1720 2.770699 GCATCATTGCTTACTGGCTC 57.229 50.000 0.00 0.00 45.77 4.70
1545 1731 5.639082 GGAGTAAAACCCAAAAGCATCATTG 59.361 40.000 0.00 0.00 0.00 2.82
1593 1793 0.826256 GTCCCTGAACCAAACACCCC 60.826 60.000 0.00 0.00 0.00 4.95
1594 1794 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.000 0.00 0.00 0.00 4.61
1595 1795 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
1596 1796 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
1597 1797 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
1598 1798 5.828747 GACTAAAAAGTCCCTGAACCAAAC 58.171 41.667 0.00 0.00 32.97 2.93
1610 1810 9.503399 TTTTCTATTCTCTGGGACTAAAAAGTC 57.497 33.333 0.00 0.00 38.04 3.01
1611 1811 9.862149 TTTTTCTATTCTCTGGGACTAAAAAGT 57.138 29.630 0.00 0.00 0.00 2.66
1613 1813 9.862149 ACTTTTTCTATTCTCTGGGACTAAAAA 57.138 29.630 0.00 0.00 0.00 1.94
1614 1814 9.503399 GACTTTTTCTATTCTCTGGGACTAAAA 57.497 33.333 0.00 0.00 0.00 1.52
1615 1815 8.101419 GGACTTTTTCTATTCTCTGGGACTAAA 58.899 37.037 0.00 0.00 0.00 1.85
1616 1816 7.311109 GGGACTTTTTCTATTCTCTGGGACTAA 60.311 40.741 0.00 0.00 0.00 2.24
1617 1817 6.156429 GGGACTTTTTCTATTCTCTGGGACTA 59.844 42.308 0.00 0.00 0.00 2.59
1618 1818 5.045505 GGGACTTTTTCTATTCTCTGGGACT 60.046 44.000 0.00 0.00 0.00 3.85
1619 1819 5.045505 AGGGACTTTTTCTATTCTCTGGGAC 60.046 44.000 0.00 0.00 27.25 4.46
1620 1820 5.101529 AGGGACTTTTTCTATTCTCTGGGA 58.898 41.667 0.00 0.00 27.25 4.37
1621 1821 5.443230 AGGGACTTTTTCTATTCTCTGGG 57.557 43.478 0.00 0.00 27.25 4.45
1622 1822 8.863872 TTTTAGGGACTTTTTCTATTCTCTGG 57.136 34.615 0.00 0.00 41.75 3.86
1626 1826 9.298250 GGACTTTTTAGGGACTTTTTCTATTCT 57.702 33.333 0.00 0.00 41.75 2.40
1627 1827 8.521176 GGGACTTTTTAGGGACTTTTTCTATTC 58.479 37.037 0.00 0.00 41.75 1.75
1628 1828 8.232412 AGGGACTTTTTAGGGACTTTTTCTATT 58.768 33.333 0.00 0.00 34.75 1.73
1629 1829 7.766628 AGGGACTTTTTAGGGACTTTTTCTAT 58.233 34.615 0.00 0.00 34.75 1.98
1630 1830 7.157947 AGGGACTTTTTAGGGACTTTTTCTA 57.842 36.000 0.00 0.00 34.75 2.10
1631 1831 6.027025 AGGGACTTTTTAGGGACTTTTTCT 57.973 37.500 0.00 0.00 34.75 2.52
1632 1832 6.433404 CCTAGGGACTTTTTAGGGACTTTTTC 59.567 42.308 0.00 0.00 39.49 2.29
1633 1833 6.103649 TCCTAGGGACTTTTTAGGGACTTTTT 59.896 38.462 9.46 0.00 39.49 1.94
1634 1834 5.613973 TCCTAGGGACTTTTTAGGGACTTTT 59.386 40.000 9.46 0.00 39.49 2.27
1635 1835 5.167921 TCCTAGGGACTTTTTAGGGACTTT 58.832 41.667 9.46 0.00 39.49 2.66
1636 1836 4.771338 TCCTAGGGACTTTTTAGGGACTT 58.229 43.478 9.46 0.00 39.49 3.01
1637 1837 4.431158 TCCTAGGGACTTTTTAGGGACT 57.569 45.455 9.46 0.00 41.75 3.85
1638 1838 4.324099 GGTTCCTAGGGACTTTTTAGGGAC 60.324 50.000 20.08 0.45 40.79 4.46
1639 1839 3.848377 GGTTCCTAGGGACTTTTTAGGGA 59.152 47.826 20.08 0.00 41.75 4.20
1640 1840 3.590182 TGGTTCCTAGGGACTTTTTAGGG 59.410 47.826 20.08 0.00 41.75 3.53
1641 1841 4.921644 TGGTTCCTAGGGACTTTTTAGG 57.078 45.455 20.08 0.00 41.75 2.69
1642 1842 6.066032 TGTTTGGTTCCTAGGGACTTTTTAG 58.934 40.000 20.08 0.00 41.75 1.85
1643 1843 6.015991 TGTTTGGTTCCTAGGGACTTTTTA 57.984 37.500 20.08 1.82 41.75 1.52
1644 1844 4.874199 TGTTTGGTTCCTAGGGACTTTTT 58.126 39.130 20.08 0.00 41.75 1.94
1645 1845 4.470602 CTGTTTGGTTCCTAGGGACTTTT 58.529 43.478 20.08 0.00 41.75 2.27
1646 1846 3.181433 CCTGTTTGGTTCCTAGGGACTTT 60.181 47.826 20.08 0.00 41.75 2.66
1647 1847 2.375509 CCTGTTTGGTTCCTAGGGACTT 59.624 50.000 20.08 0.00 41.75 3.01
1648 1848 1.985895 CCTGTTTGGTTCCTAGGGACT 59.014 52.381 20.08 0.00 46.37 3.85
1649 1849 1.982958 TCCTGTTTGGTTCCTAGGGAC 59.017 52.381 12.35 12.35 37.07 4.46
1650 1850 2.266279 CTCCTGTTTGGTTCCTAGGGA 58.734 52.381 9.46 0.00 37.07 4.20
1651 1851 1.282157 CCTCCTGTTTGGTTCCTAGGG 59.718 57.143 9.46 0.00 37.07 3.53
1652 1852 1.282157 CCCTCCTGTTTGGTTCCTAGG 59.718 57.143 0.82 0.82 37.07 3.02
1653 1853 2.027100 GTCCCTCCTGTTTGGTTCCTAG 60.027 54.545 0.00 0.00 37.07 3.02
1654 1854 1.982958 GTCCCTCCTGTTTGGTTCCTA 59.017 52.381 0.00 0.00 37.07 2.94
1655 1855 0.771755 GTCCCTCCTGTTTGGTTCCT 59.228 55.000 0.00 0.00 37.07 3.36
1656 1856 0.771755 AGTCCCTCCTGTTTGGTTCC 59.228 55.000 0.00 0.00 37.07 3.62
1657 1857 2.658807 AAGTCCCTCCTGTTTGGTTC 57.341 50.000 0.00 0.00 37.07 3.62
1658 1858 3.398318 AAAAGTCCCTCCTGTTTGGTT 57.602 42.857 0.00 0.00 37.07 3.67
1659 1859 3.052869 AGAAAAAGTCCCTCCTGTTTGGT 60.053 43.478 0.00 0.00 37.07 3.67
1660 1860 3.566351 AGAAAAAGTCCCTCCTGTTTGG 58.434 45.455 0.00 0.00 37.10 3.28
1661 1861 5.130350 TGTAGAAAAAGTCCCTCCTGTTTG 58.870 41.667 0.00 0.00 0.00 2.93
1662 1862 5.377478 CTGTAGAAAAAGTCCCTCCTGTTT 58.623 41.667 0.00 0.00 0.00 2.83
1663 1863 4.202472 CCTGTAGAAAAAGTCCCTCCTGTT 60.202 45.833 0.00 0.00 0.00 3.16
1664 1864 3.328050 CCTGTAGAAAAAGTCCCTCCTGT 59.672 47.826 0.00 0.00 0.00 4.00
1665 1865 3.307762 CCCTGTAGAAAAAGTCCCTCCTG 60.308 52.174 0.00 0.00 0.00 3.86
1666 1866 2.913617 CCCTGTAGAAAAAGTCCCTCCT 59.086 50.000 0.00 0.00 0.00 3.69
1667 1867 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
1668 1868 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
1669 1869 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
1670 1870 4.776308 TCTAGTCCCTGTAGAAAAAGTCCC 59.224 45.833 0.00 0.00 0.00 4.46
1671 1871 5.997384 TCTAGTCCCTGTAGAAAAAGTCC 57.003 43.478 0.00 0.00 0.00 3.85
1677 1877 7.509659 AGAGTCTTTTTCTAGTCCCTGTAGAAA 59.490 37.037 1.96 1.96 42.24 2.52
1678 1878 7.011382 AGAGTCTTTTTCTAGTCCCTGTAGAA 58.989 38.462 0.00 0.00 35.21 2.10
1679 1879 6.553857 AGAGTCTTTTTCTAGTCCCTGTAGA 58.446 40.000 0.00 0.00 0.00 2.59
1680 1880 6.844097 AGAGTCTTTTTCTAGTCCCTGTAG 57.156 41.667 0.00 0.00 0.00 2.74
1681 1881 7.393796 CAGTAGAGTCTTTTTCTAGTCCCTGTA 59.606 40.741 0.00 0.00 30.30 2.74
1682 1882 6.209788 CAGTAGAGTCTTTTTCTAGTCCCTGT 59.790 42.308 0.00 0.00 30.30 4.00
1683 1883 6.434652 TCAGTAGAGTCTTTTTCTAGTCCCTG 59.565 42.308 0.00 0.00 30.30 4.45
1684 1884 6.553857 TCAGTAGAGTCTTTTTCTAGTCCCT 58.446 40.000 0.00 0.00 30.30 4.20
1685 1885 6.837471 TCAGTAGAGTCTTTTTCTAGTCCC 57.163 41.667 0.00 0.00 30.30 4.46
1686 1886 8.113173 TCTTCAGTAGAGTCTTTTTCTAGTCC 57.887 38.462 0.00 0.00 30.30 3.85
1744 1944 7.981517 GTGATTGGTTCAGAAGTCCTAGGACT 61.982 46.154 34.62 34.62 45.39 3.85
1745 1945 4.223032 TGATTGGTTCAGAAGTCCTAGGAC 59.777 45.833 31.29 31.29 44.86 3.85
1746 1946 4.223032 GTGATTGGTTCAGAAGTCCTAGGA 59.777 45.833 7.62 7.62 34.17 2.94
1747 1947 4.508662 GTGATTGGTTCAGAAGTCCTAGG 58.491 47.826 0.82 0.82 34.17 3.02
1748 1948 4.508662 GGTGATTGGTTCAGAAGTCCTAG 58.491 47.826 0.00 0.00 34.17 3.02
1749 1949 3.263425 GGGTGATTGGTTCAGAAGTCCTA 59.737 47.826 0.00 0.00 34.17 2.94
1750 1950 2.040412 GGGTGATTGGTTCAGAAGTCCT 59.960 50.000 0.00 0.00 34.17 3.85
1751 1951 2.437413 GGGTGATTGGTTCAGAAGTCC 58.563 52.381 0.00 0.00 34.17 3.85
1752 1952 2.437413 GGGGTGATTGGTTCAGAAGTC 58.563 52.381 0.00 0.00 34.17 3.01
1753 1953 1.075536 GGGGGTGATTGGTTCAGAAGT 59.924 52.381 0.00 0.00 34.17 3.01
1754 1954 1.355720 AGGGGGTGATTGGTTCAGAAG 59.644 52.381 0.00 0.00 34.17 2.85
1755 1955 1.455822 AGGGGGTGATTGGTTCAGAA 58.544 50.000 0.00 0.00 34.17 3.02
1756 1956 1.075374 CAAGGGGGTGATTGGTTCAGA 59.925 52.381 0.00 0.00 34.17 3.27
1757 1957 1.549203 CAAGGGGGTGATTGGTTCAG 58.451 55.000 0.00 0.00 34.17 3.02
1758 1958 0.114168 CCAAGGGGGTGATTGGTTCA 59.886 55.000 0.00 0.00 40.93 3.18
1759 1959 1.257750 GCCAAGGGGGTGATTGGTTC 61.258 60.000 5.90 0.00 46.36 3.62
1760 1960 1.229177 GCCAAGGGGGTGATTGGTT 60.229 57.895 5.90 0.00 46.36 3.67
1761 1961 0.849094 TAGCCAAGGGGGTGATTGGT 60.849 55.000 5.90 0.00 46.36 3.67
1762 1962 0.395724 GTAGCCAAGGGGGTGATTGG 60.396 60.000 0.00 0.00 46.52 3.16
1763 1963 0.331278 TGTAGCCAAGGGGGTGATTG 59.669 55.000 0.00 0.00 46.52 2.67
1764 1964 1.080638 TTGTAGCCAAGGGGGTGATT 58.919 50.000 0.00 0.00 46.52 2.57
1765 1965 0.331616 GTTGTAGCCAAGGGGGTGAT 59.668 55.000 0.00 0.00 46.52 3.06
1766 1966 1.063070 TGTTGTAGCCAAGGGGGTGA 61.063 55.000 0.00 0.00 46.52 4.02
1767 1967 0.609131 CTGTTGTAGCCAAGGGGGTG 60.609 60.000 0.00 0.00 46.52 4.61
1769 1969 4.743018 CTGTTGTAGCCAAGGGGG 57.257 61.111 0.00 0.00 40.85 5.40
1888 4294 6.128007 GGTGTGGTGTGGTTAATCAATTCTAG 60.128 42.308 0.00 0.00 0.00 2.43
2027 4641 3.221771 TGACCCACCTGAAACAGAAATG 58.778 45.455 0.00 0.00 32.44 2.32
2053 4668 6.043706 TCTCTCTTCCTTTCTTCAACTCCATT 59.956 38.462 0.00 0.00 0.00 3.16
2147 4762 2.094545 GGCAGCCAAAACGATGAGAAAT 60.095 45.455 6.55 0.00 0.00 2.17
2156 4774 0.798009 CATAAGCGGCAGCCAAAACG 60.798 55.000 13.30 0.00 46.67 3.60
2491 5130 4.523813 CATGGTGACGAACTTTGTACAAC 58.476 43.478 8.07 0.00 0.00 3.32
2631 5270 8.150945 AGACATGTTTGATACAGAGTAACAAGT 58.849 33.333 0.00 0.00 40.83 3.16
2633 5272 8.367911 AGAGACATGTTTGATACAGAGTAACAA 58.632 33.333 0.00 0.00 40.83 2.83
2635 5274 8.764524 AAGAGACATGTTTGATACAGAGTAAC 57.235 34.615 0.00 0.00 40.83 2.50
2636 5275 8.585018 TGAAGAGACATGTTTGATACAGAGTAA 58.415 33.333 0.00 0.00 40.83 2.24
2637 5276 8.122472 TGAAGAGACATGTTTGATACAGAGTA 57.878 34.615 0.00 0.00 40.83 2.59
2638 5277 6.997655 TGAAGAGACATGTTTGATACAGAGT 58.002 36.000 0.00 0.00 40.83 3.24
2692 5613 3.381272 AGGTTACATTGCATATGTGGCAC 59.619 43.478 11.55 11.55 41.75 5.01
2802 5784 2.774234 ACACTGGCTACTGGCTATTGAT 59.226 45.455 0.00 0.00 41.46 2.57
2806 5788 3.033659 AGTACACTGGCTACTGGCTAT 57.966 47.619 0.00 0.00 41.46 2.97
2847 5832 6.599244 TCTTCGGCATTTAAAATCTGTCAGAT 59.401 34.615 9.68 9.68 36.28 2.90
2849 5834 6.182039 TCTTCGGCATTTAAAATCTGTCAG 57.818 37.500 0.00 0.00 0.00 3.51
2904 5893 2.360726 CTGAGGCATGGCAGCACA 60.361 61.111 22.64 13.83 35.83 4.57
2993 5982 0.397941 CTGACTCCCCAGCAAACTCA 59.602 55.000 0.00 0.00 0.00 3.41
3197 6188 9.303537 GTAGACTCATTTTTGCTAGTACCTTAG 57.696 37.037 0.00 0.00 0.00 2.18
3302 6296 9.671279 GATGAATACAAAAGGGAAATCCAAAAT 57.329 29.630 1.22 0.00 38.24 1.82
3437 6454 2.301583 AGAGAAAGGTGCTGGACTTCTC 59.698 50.000 17.71 17.71 0.00 2.87
3520 6540 2.065899 ACAAAGTTGCCTGCTGGTAA 57.934 45.000 9.08 9.08 35.57 2.85
3590 6610 2.441348 TGGGCGAGCGATAGTCCA 60.441 61.111 1.98 1.98 39.35 4.02
3601 6621 3.013921 GGAATTATGTTGAACTGGGCGA 58.986 45.455 0.00 0.00 0.00 5.54
3758 6786 5.674148 CGAGATACAAAATGATGCTTCAACG 59.326 40.000 6.36 0.00 34.96 4.10
3861 6895 8.523915 TCGTCAACTTAGGATACCAAGTATTA 57.476 34.615 0.00 0.00 33.92 0.98
4140 7293 7.539712 TTCAATACAATAGCACTTCTGTAGC 57.460 36.000 0.00 0.00 0.00 3.58
4228 7389 3.849911 TGAGCTCTACATTTGTTCGAGG 58.150 45.455 16.19 0.00 0.00 4.63
4421 7695 5.415701 ACACCCTTATGTCAATGCTTTACAG 59.584 40.000 0.00 0.00 0.00 2.74
4640 7921 2.403252 ACCTGGTCCGAATGAATCAC 57.597 50.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.