Multiple sequence alignment - TraesCS4A01G261200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G261200 chr4A 100.000 6230 0 0 1 6230 573670541 573664312 0.000000e+00 11505
1 TraesCS4A01G261200 chr4A 90.928 2833 146 48 3236 6005 597843546 597846330 0.000000e+00 3705
2 TraesCS4A01G261200 chr4A 89.637 2779 160 56 446 3154 597840827 597843547 0.000000e+00 3419
3 TraesCS4A01G261200 chr4A 98.190 442 8 0 4 445 608865910 608866351 0.000000e+00 773
4 TraesCS4A01G261200 chr4A 92.537 335 5 5 114 445 573683075 573683392 4.400000e-126 462
5 TraesCS4A01G261200 chr4A 96.047 253 9 1 188 440 608841081 608840830 1.620000e-110 411
6 TraesCS4A01G261200 chr4D 99.001 5803 41 9 429 6230 29405284 29411070 0.000000e+00 10379
7 TraesCS4A01G261200 chr4D 90.478 2783 151 45 446 3154 5680469 5677727 0.000000e+00 3567
8 TraesCS4A01G261200 chr4D 93.991 1531 76 10 3239 4762 5677725 5676204 0.000000e+00 2303
9 TraesCS4A01G261200 chr4D 90.480 1166 55 19 4879 6005 5676211 5675063 0.000000e+00 1487
10 TraesCS4A01G261200 chr4D 94.144 444 22 4 4 445 433386578 433387019 0.000000e+00 673
11 TraesCS4A01G261200 chr4D 92.274 453 20 6 4 445 477883998 477884446 4.100000e-176 628
12 TraesCS4A01G261200 chr4D 89.676 339 13 6 114 447 433378830 433378509 4.490000e-111 412
13 TraesCS4A01G261200 chr4D 89.851 335 14 5 114 445 477876140 477875823 4.490000e-111 412
14 TraesCS4A01G261200 chr6B 92.248 2825 135 29 3239 6005 625889120 625886322 0.000000e+00 3927
15 TraesCS4A01G261200 chr6B 89.336 2532 155 47 681 3154 625891596 625889122 0.000000e+00 3073
16 TraesCS4A01G261200 chr4B 97.592 1661 21 3 2293 3940 41837156 41838810 0.000000e+00 2828
17 TraesCS4A01G261200 chr4B 98.801 1334 12 2 4897 6230 41841134 41842463 0.000000e+00 2372
18 TraesCS4A01G261200 chr4B 98.848 868 7 3 3919 4783 41840244 41841111 0.000000e+00 1544
19 TraesCS4A01G261200 chr4B 93.158 380 9 2 835 1214 41836623 41836985 5.490000e-150 542
20 TraesCS4A01G261200 chr4B 98.895 181 2 0 2078 2258 41836981 41837161 2.170000e-84 324
21 TraesCS4A01G261200 chr3A 95.711 443 18 1 4 445 714630592 714630150 0.000000e+00 712
22 TraesCS4A01G261200 chr3A 91.343 335 9 7 114 445 714638586 714638903 2.060000e-119 440
23 TraesCS4A01G261200 chr2B 90.265 452 34 3 4 445 685372309 685372760 3.240000e-162 582
24 TraesCS4A01G261200 chr5D 93.247 385 16 3 4 378 375443186 375442802 5.450000e-155 558
25 TraesCS4A01G261200 chr5D 88.539 445 25 12 4 444 449913892 449913470 3.330000e-142 516
26 TraesCS4A01G261200 chr5D 90.828 338 20 4 118 445 526622683 526623019 5.730000e-120 442
27 TraesCS4A01G261200 chr5D 89.851 335 14 7 114 445 375448652 375448969 4.490000e-111 412
28 TraesCS4A01G261200 chr5D 91.791 268 12 3 43 300 375442538 375442805 1.280000e-96 364
29 TraesCS4A01G261200 chr5D 95.349 86 4 0 3152 3237 532592545 532592460 3.030000e-28 137
30 TraesCS4A01G261200 chr5D 93.258 89 6 0 3149 3237 446918259 446918171 1.410000e-26 132
31 TraesCS4A01G261200 chr6A 97.647 85 2 0 3153 3237 108251274 108251358 5.030000e-31 147
32 TraesCS4A01G261200 chr2A 95.402 87 4 0 3153 3239 745552763 745552849 8.420000e-29 139
33 TraesCS4A01G261200 chr2A 95.294 85 4 0 3153 3237 539325662 539325578 1.090000e-27 135
34 TraesCS4A01G261200 chr7A 95.294 85 4 0 3153 3237 581850992 581850908 1.090000e-27 135
35 TraesCS4A01G261200 chr1A 95.294 85 4 0 3153 3237 209362154 209362070 1.090000e-27 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G261200 chr4A 573664312 573670541 6229 True 11505.000000 11505 100.000000 1 6230 1 chr4A.!!$R1 6229
1 TraesCS4A01G261200 chr4A 597840827 597846330 5503 False 3562.000000 3705 90.282500 446 6005 2 chr4A.!!$F3 5559
2 TraesCS4A01G261200 chr4D 29405284 29411070 5786 False 10379.000000 10379 99.001000 429 6230 1 chr4D.!!$F1 5801
3 TraesCS4A01G261200 chr4D 5675063 5680469 5406 True 2452.333333 3567 91.649667 446 6005 3 chr4D.!!$R3 5559
4 TraesCS4A01G261200 chr6B 625886322 625891596 5274 True 3500.000000 3927 90.792000 681 6005 2 chr6B.!!$R1 5324
5 TraesCS4A01G261200 chr4B 41836623 41842463 5840 False 1522.000000 2828 97.458800 835 6230 5 chr4B.!!$F1 5395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 422 0.035439 TGGGACGGAAGCCTCAATTC 60.035 55.000 0.00 0.0 0.00 2.17 F
425 426 0.693049 ACGGAAGCCTCAATTCAGGT 59.307 50.000 0.00 0.0 35.72 4.00 F
426 427 1.906574 ACGGAAGCCTCAATTCAGGTA 59.093 47.619 0.00 0.0 35.72 3.08 F
1483 1515 2.040278 TGCTTAGTGACCTTTGGATGCT 59.960 45.455 0.00 0.0 0.00 3.79 F
1488 1520 2.107204 AGTGACCTTTGGATGCTGTTCT 59.893 45.455 0.00 0.0 0.00 3.01 F
2113 2181 3.194755 TGATGTTAGAGAAGGCGCTTGTA 59.805 43.478 7.64 0.0 0.00 2.41 F
4840 6499 1.565759 TGACCGGTAGCCTCTAGGTTA 59.434 52.381 7.34 0.0 35.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2181 0.166814 GCTTGTCTCGCGCAAAATCT 59.833 50.000 8.75 0.0 0.00 2.40 R
2809 2928 8.469200 CATCAATGTTAAATATGTGACCACCTT 58.531 33.333 0.00 0.0 0.00 3.50 R
3416 3550 6.770785 TGAGGTTACAATACAGCAAAGAGTTT 59.229 34.615 0.00 0.0 0.00 2.66 R
4343 5962 1.800655 CGTAGCTCTCACCACATCAGC 60.801 57.143 0.00 0.0 0.00 4.26 R
4840 6499 8.394971 TCATTAACAGATATCCATCGCAAATT 57.605 30.769 0.00 0.0 36.20 1.82 R
4943 6605 9.912634 AACCTGTTTTAATAGTCAACATTGATG 57.087 29.630 0.00 0.0 39.73 3.07 R
6039 7748 9.969001 AGTTCTTGTAAGAGACTAGAGATACTT 57.031 33.333 0.00 0.0 40.38 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.913317 TGCTGAACTCGTCATCATCG 58.087 50.000 0.00 0.00 35.07 3.84
20 21 1.202348 TGCTGAACTCGTCATCATCGT 59.798 47.619 0.00 0.00 35.07 3.73
21 22 1.849219 GCTGAACTCGTCATCATCGTC 59.151 52.381 0.00 0.00 35.07 4.20
22 23 2.455032 CTGAACTCGTCATCATCGTCC 58.545 52.381 0.00 0.00 35.07 4.79
23 24 1.202143 TGAACTCGTCATCATCGTCCG 60.202 52.381 0.00 0.00 0.00 4.79
24 25 1.063616 GAACTCGTCATCATCGTCCGA 59.936 52.381 0.00 0.00 0.00 4.55
25 26 3.446365 CTCGTCATCATCGTCCGAG 57.554 57.895 0.00 0.00 39.02 4.63
26 27 0.040870 CTCGTCATCATCGTCCGAGG 60.041 60.000 0.00 0.00 40.85 4.63
27 28 0.746923 TCGTCATCATCGTCCGAGGT 60.747 55.000 1.09 0.00 0.00 3.85
28 29 0.317103 CGTCATCATCGTCCGAGGTC 60.317 60.000 1.09 0.00 0.00 3.85
29 30 1.025812 GTCATCATCGTCCGAGGTCT 58.974 55.000 1.09 0.00 0.00 3.85
30 31 1.002251 GTCATCATCGTCCGAGGTCTC 60.002 57.143 1.09 0.00 0.00 3.36
42 43 3.351020 CGAGGTCTCGTTACTATTGGG 57.649 52.381 11.76 0.00 46.99 4.12
43 44 2.543238 CGAGGTCTCGTTACTATTGGGC 60.543 54.545 11.76 0.00 46.99 5.36
44 45 1.761198 AGGTCTCGTTACTATTGGGCC 59.239 52.381 0.00 0.00 0.00 5.80
45 46 1.483415 GGTCTCGTTACTATTGGGCCA 59.517 52.381 0.00 0.00 0.00 5.36
46 47 2.483188 GGTCTCGTTACTATTGGGCCAG 60.483 54.545 6.23 0.00 0.00 4.85
47 48 1.760613 TCTCGTTACTATTGGGCCAGG 59.239 52.381 6.23 3.91 0.00 4.45
48 49 1.760613 CTCGTTACTATTGGGCCAGGA 59.239 52.381 6.23 0.00 0.00 3.86
49 50 1.483415 TCGTTACTATTGGGCCAGGAC 59.517 52.381 6.23 0.00 0.00 3.85
50 51 1.208535 CGTTACTATTGGGCCAGGACA 59.791 52.381 6.23 0.00 0.00 4.02
51 52 2.741878 CGTTACTATTGGGCCAGGACAG 60.742 54.545 6.23 5.28 0.00 3.51
52 53 0.837272 TACTATTGGGCCAGGACAGC 59.163 55.000 6.23 0.00 0.00 4.40
53 54 1.207488 ACTATTGGGCCAGGACAGCA 61.207 55.000 6.23 0.00 0.00 4.41
54 55 0.184451 CTATTGGGCCAGGACAGCAT 59.816 55.000 6.23 0.00 0.00 3.79
55 56 0.106569 TATTGGGCCAGGACAGCATG 60.107 55.000 6.23 0.00 46.00 4.06
60 61 2.124983 CCAGGACAGCATGGTCGG 60.125 66.667 0.00 0.00 43.62 4.79
61 62 2.665000 CAGGACAGCATGGTCGGT 59.335 61.111 0.00 0.00 43.62 4.69
62 63 1.448540 CAGGACAGCATGGTCGGTC 60.449 63.158 6.79 6.79 43.62 4.79
63 64 2.509336 GGACAGCATGGTCGGTCG 60.509 66.667 8.70 0.00 43.62 4.79
64 65 2.261671 GACAGCATGGTCGGTCGT 59.738 61.111 0.00 0.00 43.62 4.34
65 66 2.048222 ACAGCATGGTCGGTCGTG 60.048 61.111 0.00 0.00 43.62 4.35
66 67 2.815211 CAGCATGGTCGGTCGTGG 60.815 66.667 0.00 0.00 0.00 4.94
67 68 4.760047 AGCATGGTCGGTCGTGGC 62.760 66.667 0.00 0.00 0.00 5.01
69 70 4.735132 CATGGTCGGTCGTGGCGT 62.735 66.667 0.00 0.00 0.00 5.68
70 71 4.430765 ATGGTCGGTCGTGGCGTC 62.431 66.667 0.00 0.00 0.00 5.19
88 89 2.885861 GCCGGAGAGCGAGAAGAA 59.114 61.111 5.05 0.00 0.00 2.52
89 90 1.226831 GCCGGAGAGCGAGAAGAAG 60.227 63.158 5.05 0.00 0.00 2.85
90 91 1.226831 CCGGAGAGCGAGAAGAAGC 60.227 63.158 0.00 0.00 0.00 3.86
91 92 1.508545 CGGAGAGCGAGAAGAAGCA 59.491 57.895 0.00 0.00 35.48 3.91
92 93 0.525242 CGGAGAGCGAGAAGAAGCAG 60.525 60.000 0.00 0.00 35.48 4.24
93 94 0.814457 GGAGAGCGAGAAGAAGCAGA 59.186 55.000 0.00 0.00 35.48 4.26
94 95 1.202290 GGAGAGCGAGAAGAAGCAGAG 60.202 57.143 0.00 0.00 35.48 3.35
95 96 0.173255 AGAGCGAGAAGAAGCAGAGC 59.827 55.000 0.00 0.00 35.48 4.09
96 97 0.108898 GAGCGAGAAGAAGCAGAGCA 60.109 55.000 0.00 0.00 35.48 4.26
97 98 0.108709 AGCGAGAAGAAGCAGAGCAG 60.109 55.000 0.00 0.00 35.48 4.24
98 99 0.108898 GCGAGAAGAAGCAGAGCAGA 60.109 55.000 0.00 0.00 0.00 4.26
99 100 1.912001 CGAGAAGAAGCAGAGCAGAG 58.088 55.000 0.00 0.00 0.00 3.35
100 101 1.643880 GAGAAGAAGCAGAGCAGAGC 58.356 55.000 0.00 0.00 0.00 4.09
101 102 0.975135 AGAAGAAGCAGAGCAGAGCA 59.025 50.000 0.00 0.00 0.00 4.26
102 103 1.347050 AGAAGAAGCAGAGCAGAGCAA 59.653 47.619 0.00 0.00 0.00 3.91
103 104 2.149578 GAAGAAGCAGAGCAGAGCAAA 58.850 47.619 0.00 0.00 0.00 3.68
104 105 1.810959 AGAAGCAGAGCAGAGCAAAG 58.189 50.000 0.00 0.00 0.00 2.77
105 106 1.072015 AGAAGCAGAGCAGAGCAAAGT 59.928 47.619 0.00 0.00 0.00 2.66
106 107 1.197264 GAAGCAGAGCAGAGCAAAGTG 59.803 52.381 0.00 0.00 0.00 3.16
107 108 0.605860 AGCAGAGCAGAGCAAAGTGG 60.606 55.000 0.00 0.00 0.00 4.00
108 109 1.584380 GCAGAGCAGAGCAAAGTGGG 61.584 60.000 0.00 0.00 0.00 4.61
109 110 0.959372 CAGAGCAGAGCAAAGTGGGG 60.959 60.000 0.00 0.00 0.00 4.96
110 111 1.130054 AGAGCAGAGCAAAGTGGGGA 61.130 55.000 0.00 0.00 0.00 4.81
111 112 0.676151 GAGCAGAGCAAAGTGGGGAG 60.676 60.000 0.00 0.00 0.00 4.30
112 113 1.073897 GCAGAGCAAAGTGGGGAGT 59.926 57.895 0.00 0.00 0.00 3.85
113 114 1.239968 GCAGAGCAAAGTGGGGAGTG 61.240 60.000 0.00 0.00 0.00 3.51
114 115 0.397941 CAGAGCAAAGTGGGGAGTGA 59.602 55.000 0.00 0.00 0.00 3.41
115 116 0.689623 AGAGCAAAGTGGGGAGTGAG 59.310 55.000 0.00 0.00 0.00 3.51
116 117 0.957888 GAGCAAAGTGGGGAGTGAGC 60.958 60.000 0.00 0.00 0.00 4.26
117 118 1.073897 GCAAAGTGGGGAGTGAGCT 59.926 57.895 0.00 0.00 0.00 4.09
118 119 0.957888 GCAAAGTGGGGAGTGAGCTC 60.958 60.000 6.82 6.82 40.93 4.09
119 120 0.671781 CAAAGTGGGGAGTGAGCTCG 60.672 60.000 9.64 0.00 42.53 5.03
120 121 1.831652 AAAGTGGGGAGTGAGCTCGG 61.832 60.000 9.64 0.00 42.53 4.63
121 122 3.775654 GTGGGGAGTGAGCTCGGG 61.776 72.222 9.64 0.00 42.53 5.14
124 125 4.779733 GGGAGTGAGCTCGGGGGA 62.780 72.222 9.64 0.00 42.53 4.81
125 126 3.151022 GGAGTGAGCTCGGGGGAG 61.151 72.222 9.64 0.00 42.53 4.30
126 127 2.043852 GAGTGAGCTCGGGGGAGA 60.044 66.667 9.64 0.00 31.39 3.71
127 128 2.043450 AGTGAGCTCGGGGGAGAG 60.043 66.667 9.64 0.00 41.03 3.20
128 129 2.363147 GTGAGCTCGGGGGAGAGT 60.363 66.667 9.64 0.00 40.26 3.24
129 130 2.363018 TGAGCTCGGGGGAGAGTG 60.363 66.667 9.64 0.00 40.26 3.51
130 131 2.043852 GAGCTCGGGGGAGAGTGA 60.044 66.667 0.00 0.00 40.26 3.41
131 132 2.043450 AGCTCGGGGGAGAGTGAG 60.043 66.667 0.00 0.00 40.26 3.51
132 133 3.151022 GCTCGGGGGAGAGTGAGG 61.151 72.222 0.00 0.00 40.26 3.86
133 134 2.443016 CTCGGGGGAGAGTGAGGG 60.443 72.222 0.00 0.00 33.75 4.30
134 135 2.944954 TCGGGGGAGAGTGAGGGA 60.945 66.667 0.00 0.00 0.00 4.20
135 136 2.443016 CGGGGGAGAGTGAGGGAG 60.443 72.222 0.00 0.00 0.00 4.30
136 137 2.766229 GGGGGAGAGTGAGGGAGC 60.766 72.222 0.00 0.00 0.00 4.70
137 138 2.039624 GGGGAGAGTGAGGGAGCA 59.960 66.667 0.00 0.00 0.00 4.26
138 139 2.063378 GGGGAGAGTGAGGGAGCAG 61.063 68.421 0.00 0.00 0.00 4.24
139 140 2.063378 GGGAGAGTGAGGGAGCAGG 61.063 68.421 0.00 0.00 0.00 4.85
140 141 1.305718 GGAGAGTGAGGGAGCAGGT 60.306 63.158 0.00 0.00 0.00 4.00
141 142 1.612395 GGAGAGTGAGGGAGCAGGTG 61.612 65.000 0.00 0.00 0.00 4.00
142 143 1.611851 AGAGTGAGGGAGCAGGTGG 60.612 63.158 0.00 0.00 0.00 4.61
143 144 2.608988 AGTGAGGGAGCAGGTGGG 60.609 66.667 0.00 0.00 0.00 4.61
144 145 3.721706 GTGAGGGAGCAGGTGGGG 61.722 72.222 0.00 0.00 0.00 4.96
145 146 3.940480 TGAGGGAGCAGGTGGGGA 61.940 66.667 0.00 0.00 0.00 4.81
146 147 3.403558 GAGGGAGCAGGTGGGGAC 61.404 72.222 0.00 0.00 0.00 4.46
149 150 3.775654 GGAGCAGGTGGGGACGAG 61.776 72.222 0.00 0.00 0.00 4.18
150 151 4.459089 GAGCAGGTGGGGACGAGC 62.459 72.222 0.00 0.00 0.00 5.03
167 168 3.861797 CCCGGTCGGCCAGCTTAT 61.862 66.667 6.96 0.00 34.09 1.73
168 169 2.504274 CCCGGTCGGCCAGCTTATA 61.504 63.158 6.96 0.00 34.09 0.98
169 170 1.300697 CCGGTCGGCCAGCTTATAC 60.301 63.158 6.96 0.00 34.09 1.47
170 171 1.300697 CGGTCGGCCAGCTTATACC 60.301 63.158 6.96 0.00 34.09 2.73
171 172 1.745320 CGGTCGGCCAGCTTATACCT 61.745 60.000 6.96 0.00 34.09 3.08
172 173 0.249911 GGTCGGCCAGCTTATACCTG 60.250 60.000 0.00 0.00 34.09 4.00
176 177 0.108774 GGCCAGCTTATACCTGGTCC 59.891 60.000 0.63 14.09 46.80 4.46
177 178 3.577837 GGCCAGCTTATACCTGGTCCG 62.578 61.905 0.63 0.00 46.80 4.79
178 179 1.410004 CCAGCTTATACCTGGTCCGA 58.590 55.000 0.63 0.00 43.86 4.55
179 180 1.971357 CCAGCTTATACCTGGTCCGAT 59.029 52.381 0.63 0.00 43.86 4.18
180 181 2.289072 CCAGCTTATACCTGGTCCGATG 60.289 54.545 0.63 0.00 43.86 3.84
181 182 1.344763 AGCTTATACCTGGTCCGATGC 59.655 52.381 0.63 4.08 0.00 3.91
182 183 1.935300 GCTTATACCTGGTCCGATGCG 60.935 57.143 0.63 0.00 0.00 4.73
204 205 4.736896 GGTCCGACCAGGTGCGAC 62.737 72.222 13.05 1.47 41.99 5.19
205 206 4.736896 GTCCGACCAGGTGCGACC 62.737 72.222 0.00 0.00 41.99 4.79
224 225 4.842091 CGACGGCCGGGTCTAACG 62.842 72.222 31.76 17.65 34.75 3.18
231 232 4.124351 CGGGTCTAACGGCTGCGA 62.124 66.667 0.00 0.00 0.00 5.10
232 233 2.202756 GGGTCTAACGGCTGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
233 234 2.202756 GGTCTAACGGCTGCGAGG 60.203 66.667 0.00 0.00 0.00 4.63
234 235 2.202756 GTCTAACGGCTGCGAGGG 60.203 66.667 0.00 0.00 0.00 4.30
235 236 2.361992 TCTAACGGCTGCGAGGGA 60.362 61.111 0.00 0.00 0.00 4.20
236 237 2.105128 CTAACGGCTGCGAGGGAG 59.895 66.667 0.00 0.00 0.00 4.30
237 238 4.143333 TAACGGCTGCGAGGGAGC 62.143 66.667 0.04 0.04 35.57 4.70
247 248 4.893601 GAGGGAGCGCCGTTAGCC 62.894 72.222 2.29 0.00 38.78 3.93
251 252 2.202650 GAGCGCCGTTAGCCGTTA 60.203 61.111 2.29 0.00 38.78 3.18
252 253 2.507769 AGCGCCGTTAGCCGTTAC 60.508 61.111 2.29 0.00 38.78 2.50
253 254 3.557479 GCGCCGTTAGCCGTTACC 61.557 66.667 0.00 0.00 38.78 2.85
254 255 3.249605 CGCCGTTAGCCGTTACCG 61.250 66.667 0.00 0.00 38.78 4.02
255 256 3.557479 GCCGTTAGCCGTTACCGC 61.557 66.667 0.00 0.00 34.35 5.68
256 257 2.182537 CCGTTAGCCGTTACCGCT 59.817 61.111 3.51 3.51 33.66 5.52
257 258 2.162754 CCGTTAGCCGTTACCGCTG 61.163 63.158 8.37 0.00 33.66 5.18
258 259 2.162754 CGTTAGCCGTTACCGCTGG 61.163 63.158 8.37 0.00 0.00 4.85
264 265 4.728102 CGTTACCGCTGGCGTCCA 62.728 66.667 13.84 0.00 37.81 4.02
265 266 3.116531 GTTACCGCTGGCGTCCAC 61.117 66.667 13.84 3.51 37.81 4.02
266 267 4.382320 TTACCGCTGGCGTCCACC 62.382 66.667 13.84 0.00 37.81 4.61
271 272 4.314440 GCTGGCGTCCACCTGACA 62.314 66.667 0.00 0.00 44.71 3.58
272 273 2.665000 CTGGCGTCCACCTGACAT 59.335 61.111 0.00 0.00 44.71 3.06
273 274 1.742880 CTGGCGTCCACCTGACATG 60.743 63.158 0.00 0.00 44.71 3.21
274 275 2.347490 GGCGTCCACCTGACATGT 59.653 61.111 0.00 0.00 44.71 3.21
275 276 2.034879 GGCGTCCACCTGACATGTG 61.035 63.158 1.15 4.03 44.71 3.21
280 281 2.435663 CACCTGACATGTGGGCCA 59.564 61.111 1.15 0.00 0.00 5.36
281 282 1.973281 CACCTGACATGTGGGCCAC 60.973 63.158 29.75 29.75 34.56 5.01
282 283 2.156098 ACCTGACATGTGGGCCACT 61.156 57.895 34.69 17.45 35.11 4.00
283 284 1.676635 CCTGACATGTGGGCCACTG 60.677 63.158 34.69 29.15 35.11 3.66
284 285 2.282391 TGACATGTGGGCCACTGC 60.282 61.111 34.69 23.16 35.11 4.40
285 286 2.034687 GACATGTGGGCCACTGCT 59.965 61.111 34.69 17.91 37.74 4.24
286 287 2.282674 ACATGTGGGCCACTGCTG 60.283 61.111 34.69 28.32 37.74 4.41
287 288 2.282674 CATGTGGGCCACTGCTGT 60.283 61.111 34.69 14.45 37.74 4.40
288 289 2.034687 ATGTGGGCCACTGCTGTC 59.965 61.111 34.69 9.70 37.74 3.51
289 290 2.832778 ATGTGGGCCACTGCTGTCA 61.833 57.895 34.69 15.43 37.74 3.58
290 291 2.670934 GTGGGCCACTGCTGTCAG 60.671 66.667 29.22 0.00 45.71 3.51
291 292 2.848679 TGGGCCACTGCTGTCAGA 60.849 61.111 0.00 0.00 42.95 3.27
292 293 2.431683 GGGCCACTGCTGTCAGAA 59.568 61.111 4.39 0.00 42.95 3.02
293 294 1.228245 GGGCCACTGCTGTCAGAAA 60.228 57.895 4.39 0.00 42.95 2.52
294 295 1.518903 GGGCCACTGCTGTCAGAAAC 61.519 60.000 4.39 0.00 42.95 2.78
295 296 1.571460 GCCACTGCTGTCAGAAACG 59.429 57.895 3.32 0.00 42.95 3.60
296 297 1.845809 GCCACTGCTGTCAGAAACGG 61.846 60.000 3.32 0.00 42.95 4.44
297 298 1.230635 CCACTGCTGTCAGAAACGGG 61.231 60.000 3.32 0.00 42.95 5.28
298 299 0.532862 CACTGCTGTCAGAAACGGGT 60.533 55.000 3.32 0.00 42.95 5.28
299 300 0.180406 ACTGCTGTCAGAAACGGGTT 59.820 50.000 3.32 0.00 42.95 4.11
300 301 1.308998 CTGCTGTCAGAAACGGGTTT 58.691 50.000 3.32 0.00 42.95 3.27
301 302 2.158871 ACTGCTGTCAGAAACGGGTTTA 60.159 45.455 3.32 0.00 42.95 2.01
302 303 2.875933 CTGCTGTCAGAAACGGGTTTAA 59.124 45.455 3.32 0.00 42.95 1.52
303 304 3.280295 TGCTGTCAGAAACGGGTTTAAA 58.720 40.909 3.32 0.00 34.56 1.52
304 305 3.065648 TGCTGTCAGAAACGGGTTTAAAC 59.934 43.478 9.98 9.98 34.56 2.01
305 306 3.847105 GCTGTCAGAAACGGGTTTAAACG 60.847 47.826 12.07 4.56 34.56 3.60
306 307 2.031930 TGTCAGAAACGGGTTTAAACGC 59.968 45.455 21.91 21.91 38.37 4.84
307 308 2.288729 GTCAGAAACGGGTTTAAACGCT 59.711 45.455 26.77 13.10 39.45 5.07
308 309 2.545106 TCAGAAACGGGTTTAAACGCTC 59.455 45.455 26.77 19.41 39.45 5.03
309 310 2.546789 CAGAAACGGGTTTAAACGCTCT 59.453 45.455 26.77 20.93 39.45 4.09
310 311 3.742369 CAGAAACGGGTTTAAACGCTCTA 59.258 43.478 26.77 0.00 39.45 2.43
311 312 4.211794 CAGAAACGGGTTTAAACGCTCTAA 59.788 41.667 26.77 0.00 39.45 2.10
312 313 4.815846 AGAAACGGGTTTAAACGCTCTAAA 59.184 37.500 26.77 0.00 39.45 1.85
313 314 5.296531 AGAAACGGGTTTAAACGCTCTAAAA 59.703 36.000 26.77 0.00 39.45 1.52
314 315 4.472691 ACGGGTTTAAACGCTCTAAAAC 57.527 40.909 26.77 5.58 39.45 2.43
315 316 3.059665 ACGGGTTTAAACGCTCTAAAACG 60.060 43.478 26.77 14.57 39.45 3.60
316 317 3.665060 CGGGTTTAAACGCTCTAAAACGG 60.665 47.826 26.77 9.45 39.45 4.44
317 318 3.250762 GGGTTTAAACGCTCTAAAACGGT 59.749 43.478 23.85 0.00 38.65 4.83
318 319 4.457810 GGTTTAAACGCTCTAAAACGGTC 58.542 43.478 12.07 0.00 33.61 4.79
319 320 4.024977 GGTTTAAACGCTCTAAAACGGTCA 60.025 41.667 12.07 0.00 33.61 4.02
320 321 5.500825 GTTTAAACGCTCTAAAACGGTCAA 58.499 37.500 1.89 0.00 0.00 3.18
321 322 5.927954 TTAAACGCTCTAAAACGGTCAAT 57.072 34.783 0.00 0.00 0.00 2.57
322 323 4.823790 AAACGCTCTAAAACGGTCAATT 57.176 36.364 0.00 0.00 0.00 2.32
323 324 4.400036 AACGCTCTAAAACGGTCAATTC 57.600 40.909 0.00 0.00 0.00 2.17
324 325 2.410730 ACGCTCTAAAACGGTCAATTCG 59.589 45.455 0.00 0.00 0.00 3.34
325 326 2.410730 CGCTCTAAAACGGTCAATTCGT 59.589 45.455 0.00 0.00 43.14 3.85
326 327 3.481467 CGCTCTAAAACGGTCAATTCGTC 60.481 47.826 0.00 0.00 40.18 4.20
327 328 3.430895 GCTCTAAAACGGTCAATTCGTCA 59.569 43.478 0.00 0.00 40.18 4.35
328 329 4.084223 GCTCTAAAACGGTCAATTCGTCAA 60.084 41.667 0.00 0.00 40.18 3.18
329 330 5.333046 TCTAAAACGGTCAATTCGTCAAC 57.667 39.130 0.00 0.00 40.18 3.18
330 331 5.051816 TCTAAAACGGTCAATTCGTCAACT 58.948 37.500 0.00 0.00 40.18 3.16
331 332 4.625972 AAAACGGTCAATTCGTCAACTT 57.374 36.364 0.00 0.00 40.18 2.66
332 333 3.602390 AACGGTCAATTCGTCAACTTG 57.398 42.857 0.00 0.00 40.18 3.16
333 334 1.871039 ACGGTCAATTCGTCAACTTGG 59.129 47.619 0.00 0.00 35.87 3.61
334 335 1.871039 CGGTCAATTCGTCAACTTGGT 59.129 47.619 0.00 0.00 0.00 3.67
335 336 3.061322 CGGTCAATTCGTCAACTTGGTA 58.939 45.455 0.00 0.00 0.00 3.25
336 337 3.122948 CGGTCAATTCGTCAACTTGGTAG 59.877 47.826 0.00 0.00 0.00 3.18
337 338 4.062991 GGTCAATTCGTCAACTTGGTAGT 58.937 43.478 0.00 0.00 35.68 2.73
338 339 4.514066 GGTCAATTCGTCAACTTGGTAGTT 59.486 41.667 0.00 0.00 45.40 2.24
339 340 5.008316 GGTCAATTCGTCAACTTGGTAGTTT 59.992 40.000 0.00 0.00 41.85 2.66
340 341 6.459161 GGTCAATTCGTCAACTTGGTAGTTTT 60.459 38.462 0.00 0.00 41.85 2.43
341 342 6.970613 GTCAATTCGTCAACTTGGTAGTTTTT 59.029 34.615 0.00 0.00 41.85 1.94
342 343 8.124199 GTCAATTCGTCAACTTGGTAGTTTTTA 58.876 33.333 0.00 0.00 41.85 1.52
343 344 8.339714 TCAATTCGTCAACTTGGTAGTTTTTAG 58.660 33.333 0.00 0.00 41.85 1.85
344 345 7.797038 ATTCGTCAACTTGGTAGTTTTTAGT 57.203 32.000 0.00 0.00 41.85 2.24
345 346 6.833342 TCGTCAACTTGGTAGTTTTTAGTC 57.167 37.500 0.00 0.00 41.85 2.59
346 347 6.339730 TCGTCAACTTGGTAGTTTTTAGTCA 58.660 36.000 0.00 0.00 41.85 3.41
347 348 6.256321 TCGTCAACTTGGTAGTTTTTAGTCAC 59.744 38.462 0.00 0.00 41.85 3.67
348 349 6.036300 CGTCAACTTGGTAGTTTTTAGTCACA 59.964 38.462 0.00 0.00 41.85 3.58
349 350 7.184779 GTCAACTTGGTAGTTTTTAGTCACAC 58.815 38.462 0.00 0.00 41.85 3.82
350 351 5.978934 ACTTGGTAGTTTTTAGTCACACG 57.021 39.130 0.00 0.00 0.00 4.49
351 352 4.271776 ACTTGGTAGTTTTTAGTCACACGC 59.728 41.667 0.00 0.00 0.00 5.34
352 353 4.062677 TGGTAGTTTTTAGTCACACGCT 57.937 40.909 0.00 0.00 0.00 5.07
353 354 4.444536 TGGTAGTTTTTAGTCACACGCTT 58.555 39.130 0.00 0.00 0.00 4.68
354 355 4.508861 TGGTAGTTTTTAGTCACACGCTTC 59.491 41.667 0.00 0.00 0.00 3.86
355 356 4.084171 GGTAGTTTTTAGTCACACGCTTCC 60.084 45.833 0.00 0.00 0.00 3.46
356 357 3.537580 AGTTTTTAGTCACACGCTTCCA 58.462 40.909 0.00 0.00 0.00 3.53
357 358 3.942748 AGTTTTTAGTCACACGCTTCCAA 59.057 39.130 0.00 0.00 0.00 3.53
358 359 4.578928 AGTTTTTAGTCACACGCTTCCAAT 59.421 37.500 0.00 0.00 0.00 3.16
359 360 5.067283 AGTTTTTAGTCACACGCTTCCAATT 59.933 36.000 0.00 0.00 0.00 2.32
360 361 5.508200 TTTTAGTCACACGCTTCCAATTT 57.492 34.783 0.00 0.00 0.00 1.82
361 362 5.508200 TTTAGTCACACGCTTCCAATTTT 57.492 34.783 0.00 0.00 0.00 1.82
362 363 5.508200 TTAGTCACACGCTTCCAATTTTT 57.492 34.783 0.00 0.00 0.00 1.94
382 383 6.969993 TTTTTGGTAGTTATCAGCCACTTT 57.030 33.333 0.00 0.00 0.00 2.66
383 384 6.969993 TTTTGGTAGTTATCAGCCACTTTT 57.030 33.333 0.00 0.00 0.00 2.27
384 385 8.466617 TTTTTGGTAGTTATCAGCCACTTTTA 57.533 30.769 0.00 0.00 0.00 1.52
385 386 8.466617 TTTTGGTAGTTATCAGCCACTTTTAA 57.533 30.769 0.00 0.00 0.00 1.52
386 387 8.466617 TTTGGTAGTTATCAGCCACTTTTAAA 57.533 30.769 0.00 0.00 0.00 1.52
387 388 8.466617 TTGGTAGTTATCAGCCACTTTTAAAA 57.533 30.769 0.00 0.00 0.00 1.52
388 389 8.466617 TGGTAGTTATCAGCCACTTTTAAAAA 57.533 30.769 1.66 0.00 0.00 1.94
406 407 4.513406 AAAAAGTGGTAGTTCTGTGGGA 57.487 40.909 0.00 0.00 0.00 4.37
407 408 3.487120 AAAGTGGTAGTTCTGTGGGAC 57.513 47.619 0.00 0.00 0.00 4.46
408 409 0.966920 AGTGGTAGTTCTGTGGGACG 59.033 55.000 0.00 0.00 0.00 4.79
409 410 0.037605 GTGGTAGTTCTGTGGGACGG 60.038 60.000 0.00 0.00 0.00 4.79
410 411 0.178955 TGGTAGTTCTGTGGGACGGA 60.179 55.000 0.00 0.00 0.00 4.69
411 412 0.971386 GGTAGTTCTGTGGGACGGAA 59.029 55.000 0.00 0.00 40.89 4.30
412 413 1.067071 GGTAGTTCTGTGGGACGGAAG 60.067 57.143 0.00 0.00 43.50 3.46
413 414 0.606604 TAGTTCTGTGGGACGGAAGC 59.393 55.000 0.00 0.00 43.50 3.86
414 415 1.671379 GTTCTGTGGGACGGAAGCC 60.671 63.158 0.00 0.00 43.50 4.35
415 416 1.841556 TTCTGTGGGACGGAAGCCT 60.842 57.895 0.00 0.00 38.47 4.58
416 417 1.827399 TTCTGTGGGACGGAAGCCTC 61.827 60.000 0.00 0.00 38.47 4.70
417 418 2.525629 TGTGGGACGGAAGCCTCA 60.526 61.111 0.00 0.00 0.00 3.86
418 419 2.111999 CTGTGGGACGGAAGCCTCAA 62.112 60.000 0.00 0.00 0.00 3.02
419 420 1.299976 GTGGGACGGAAGCCTCAAT 59.700 57.895 0.00 0.00 0.00 2.57
420 421 0.322546 GTGGGACGGAAGCCTCAATT 60.323 55.000 0.00 0.00 0.00 2.32
421 422 0.035439 TGGGACGGAAGCCTCAATTC 60.035 55.000 0.00 0.00 0.00 2.17
422 423 0.035439 GGGACGGAAGCCTCAATTCA 60.035 55.000 0.00 0.00 0.00 2.57
423 424 1.373570 GGACGGAAGCCTCAATTCAG 58.626 55.000 0.00 0.00 0.00 3.02
424 425 1.373570 GACGGAAGCCTCAATTCAGG 58.626 55.000 0.00 0.00 36.50 3.86
425 426 0.693049 ACGGAAGCCTCAATTCAGGT 59.307 50.000 0.00 0.00 35.72 4.00
426 427 1.906574 ACGGAAGCCTCAATTCAGGTA 59.093 47.619 0.00 0.00 35.72 3.08
427 428 2.093447 ACGGAAGCCTCAATTCAGGTAG 60.093 50.000 0.00 0.00 35.72 3.18
428 429 2.093447 CGGAAGCCTCAATTCAGGTAGT 60.093 50.000 0.00 0.00 35.72 2.73
429 430 3.619979 CGGAAGCCTCAATTCAGGTAGTT 60.620 47.826 0.00 0.00 35.72 2.24
430 431 4.336280 GGAAGCCTCAATTCAGGTAGTTT 58.664 43.478 0.00 0.00 35.72 2.66
431 432 4.767409 GGAAGCCTCAATTCAGGTAGTTTT 59.233 41.667 0.00 0.00 35.72 2.43
432 433 5.243954 GGAAGCCTCAATTCAGGTAGTTTTT 59.756 40.000 0.00 0.00 35.72 1.94
839 859 2.047560 GAGTTTGGGGACGACGGG 60.048 66.667 0.00 0.00 0.00 5.28
1416 1444 5.130975 TGATAGAGGCATACATCACTTGGTT 59.869 40.000 0.00 0.00 0.00 3.67
1483 1515 2.040278 TGCTTAGTGACCTTTGGATGCT 59.960 45.455 0.00 0.00 0.00 3.79
1484 1516 2.421424 GCTTAGTGACCTTTGGATGCTG 59.579 50.000 0.00 0.00 0.00 4.41
1485 1517 3.679389 CTTAGTGACCTTTGGATGCTGT 58.321 45.455 0.00 0.00 0.00 4.40
1486 1518 2.664402 AGTGACCTTTGGATGCTGTT 57.336 45.000 0.00 0.00 0.00 3.16
1487 1519 2.508526 AGTGACCTTTGGATGCTGTTC 58.491 47.619 0.00 0.00 0.00 3.18
1488 1520 2.107204 AGTGACCTTTGGATGCTGTTCT 59.893 45.455 0.00 0.00 0.00 3.01
1489 1521 3.327757 AGTGACCTTTGGATGCTGTTCTA 59.672 43.478 0.00 0.00 0.00 2.10
1490 1522 3.686726 GTGACCTTTGGATGCTGTTCTAG 59.313 47.826 0.00 0.00 0.00 2.43
2113 2181 3.194755 TGATGTTAGAGAAGGCGCTTGTA 59.805 43.478 7.64 0.00 0.00 2.41
2809 2928 4.860802 ATATGATGTGGAACCAACCTCA 57.139 40.909 0.00 0.00 37.73 3.86
3056 3190 7.482743 GTGCATTGTACTTGACATACTGAATTG 59.517 37.037 0.00 0.00 38.07 2.32
3416 3550 8.772705 GTTCCAATGAAGCATTTTGAAATAACA 58.227 29.630 0.00 0.00 31.05 2.41
3872 4023 4.660789 AACATGATTCTTATTGCAGGCC 57.339 40.909 0.00 0.00 0.00 5.19
4232 5851 6.567602 AGTAAGGGATAAGCACAATCTCTT 57.432 37.500 11.41 11.41 44.49 2.85
4233 5852 6.963322 AGTAAGGGATAAGCACAATCTCTTT 58.037 36.000 11.80 0.00 40.51 2.52
4234 5853 7.051000 AGTAAGGGATAAGCACAATCTCTTTC 58.949 38.462 11.80 8.15 40.51 2.62
4235 5854 5.707066 AGGGATAAGCACAATCTCTTTCT 57.293 39.130 0.00 0.00 29.55 2.52
4419 6042 5.068987 CCTTTTCCTCCAGAACAATGTTGAA 59.931 40.000 2.20 0.00 32.95 2.69
4840 6499 1.565759 TGACCGGTAGCCTCTAGGTTA 59.434 52.381 7.34 0.00 35.00 2.85
6039 7748 3.369471 GGCTGGCTACACAAAGATAGTGA 60.369 47.826 0.00 0.00 40.16 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.849219 GACGATGATGACGAGTTCAGC 59.151 52.381 0.00 0.00 41.37 4.26
2 3 2.455032 GGACGATGATGACGAGTTCAG 58.545 52.381 0.00 0.00 37.77 3.02
4 5 1.063616 TCGGACGATGATGACGAGTTC 59.936 52.381 0.00 0.00 34.70 3.01
5 6 1.064208 CTCGGACGATGATGACGAGTT 59.936 52.381 0.00 0.00 44.18 3.01
6 7 0.658368 CTCGGACGATGATGACGAGT 59.342 55.000 0.00 0.00 44.18 4.18
9 10 0.317103 GACCTCGGACGATGATGACG 60.317 60.000 4.08 0.00 0.00 4.35
10 11 1.002251 GAGACCTCGGACGATGATGAC 60.002 57.143 4.08 0.00 0.00 3.06
11 12 1.309950 GAGACCTCGGACGATGATGA 58.690 55.000 4.08 0.00 0.00 2.92
23 24 2.223994 GGCCCAATAGTAACGAGACCTC 60.224 54.545 0.00 0.00 0.00 3.85
24 25 1.761198 GGCCCAATAGTAACGAGACCT 59.239 52.381 0.00 0.00 0.00 3.85
25 26 1.483415 TGGCCCAATAGTAACGAGACC 59.517 52.381 0.00 0.00 0.00 3.85
26 27 2.483188 CCTGGCCCAATAGTAACGAGAC 60.483 54.545 0.00 0.00 0.00 3.36
27 28 1.760613 CCTGGCCCAATAGTAACGAGA 59.239 52.381 0.00 0.00 0.00 4.04
28 29 1.760613 TCCTGGCCCAATAGTAACGAG 59.239 52.381 0.00 0.00 0.00 4.18
29 30 1.483415 GTCCTGGCCCAATAGTAACGA 59.517 52.381 0.00 0.00 0.00 3.85
30 31 1.208535 TGTCCTGGCCCAATAGTAACG 59.791 52.381 0.00 0.00 0.00 3.18
31 32 2.919228 CTGTCCTGGCCCAATAGTAAC 58.081 52.381 0.00 0.00 0.00 2.50
32 33 1.211949 GCTGTCCTGGCCCAATAGTAA 59.788 52.381 0.00 0.00 0.00 2.24
33 34 0.837272 GCTGTCCTGGCCCAATAGTA 59.163 55.000 0.00 0.00 0.00 1.82
34 35 1.207488 TGCTGTCCTGGCCCAATAGT 61.207 55.000 0.00 0.00 0.00 2.12
35 36 0.184451 ATGCTGTCCTGGCCCAATAG 59.816 55.000 0.00 0.00 0.00 1.73
36 37 0.106569 CATGCTGTCCTGGCCCAATA 60.107 55.000 0.00 0.00 0.00 1.90
37 38 1.380785 CATGCTGTCCTGGCCCAAT 60.381 57.895 0.00 0.00 0.00 3.16
38 39 2.036098 CATGCTGTCCTGGCCCAA 59.964 61.111 0.00 0.00 0.00 4.12
39 40 4.051167 CCATGCTGTCCTGGCCCA 62.051 66.667 0.00 0.00 0.00 5.36
40 41 4.052518 ACCATGCTGTCCTGGCCC 62.053 66.667 0.00 0.00 35.88 5.80
41 42 2.439156 GACCATGCTGTCCTGGCC 60.439 66.667 0.00 0.00 35.88 5.36
42 43 2.821366 CGACCATGCTGTCCTGGC 60.821 66.667 0.00 0.00 35.88 4.85
43 44 2.124983 CCGACCATGCTGTCCTGG 60.125 66.667 0.00 0.00 38.55 4.45
44 45 1.448540 GACCGACCATGCTGTCCTG 60.449 63.158 0.00 0.00 31.35 3.86
45 46 2.982130 GACCGACCATGCTGTCCT 59.018 61.111 0.00 0.00 31.35 3.85
46 47 2.509336 CGACCGACCATGCTGTCC 60.509 66.667 0.00 0.00 31.35 4.02
47 48 2.094659 CACGACCGACCATGCTGTC 61.095 63.158 0.00 0.00 0.00 3.51
48 49 2.048222 CACGACCGACCATGCTGT 60.048 61.111 0.00 0.00 0.00 4.40
49 50 2.815211 CCACGACCGACCATGCTG 60.815 66.667 0.00 0.00 0.00 4.41
50 51 4.760047 GCCACGACCGACCATGCT 62.760 66.667 0.00 0.00 0.00 3.79
52 53 4.735132 ACGCCACGACCGACCATG 62.735 66.667 0.00 0.00 0.00 3.66
53 54 4.430765 GACGCCACGACCGACCAT 62.431 66.667 0.00 0.00 0.00 3.55
71 72 1.226831 CTTCTTCTCGCTCTCCGGC 60.227 63.158 0.00 0.00 37.59 6.13
72 73 1.226831 GCTTCTTCTCGCTCTCCGG 60.227 63.158 0.00 0.00 37.59 5.14
73 74 0.525242 CTGCTTCTTCTCGCTCTCCG 60.525 60.000 0.00 0.00 38.61 4.63
74 75 0.814457 TCTGCTTCTTCTCGCTCTCC 59.186 55.000 0.00 0.00 0.00 3.71
75 76 1.798813 GCTCTGCTTCTTCTCGCTCTC 60.799 57.143 0.00 0.00 0.00 3.20
76 77 0.173255 GCTCTGCTTCTTCTCGCTCT 59.827 55.000 0.00 0.00 0.00 4.09
77 78 0.108898 TGCTCTGCTTCTTCTCGCTC 60.109 55.000 0.00 0.00 0.00 5.03
78 79 0.108709 CTGCTCTGCTTCTTCTCGCT 60.109 55.000 0.00 0.00 0.00 4.93
79 80 0.108898 TCTGCTCTGCTTCTTCTCGC 60.109 55.000 0.00 0.00 0.00 5.03
80 81 1.912001 CTCTGCTCTGCTTCTTCTCG 58.088 55.000 0.00 0.00 0.00 4.04
81 82 1.067000 TGCTCTGCTCTGCTTCTTCTC 60.067 52.381 0.00 0.00 0.00 2.87
82 83 0.975135 TGCTCTGCTCTGCTTCTTCT 59.025 50.000 0.00 0.00 0.00 2.85
83 84 1.805869 TTGCTCTGCTCTGCTTCTTC 58.194 50.000 0.00 0.00 0.00 2.87
84 85 2.152830 CTTTGCTCTGCTCTGCTTCTT 58.847 47.619 0.00 0.00 0.00 2.52
85 86 1.072015 ACTTTGCTCTGCTCTGCTTCT 59.928 47.619 0.00 0.00 0.00 2.85
86 87 1.197264 CACTTTGCTCTGCTCTGCTTC 59.803 52.381 0.00 0.00 0.00 3.86
87 88 1.236628 CACTTTGCTCTGCTCTGCTT 58.763 50.000 0.00 0.00 0.00 3.91
88 89 0.605860 CCACTTTGCTCTGCTCTGCT 60.606 55.000 0.00 0.00 0.00 4.24
89 90 1.584380 CCCACTTTGCTCTGCTCTGC 61.584 60.000 0.00 0.00 0.00 4.26
90 91 0.959372 CCCCACTTTGCTCTGCTCTG 60.959 60.000 0.00 0.00 0.00 3.35
91 92 1.130054 TCCCCACTTTGCTCTGCTCT 61.130 55.000 0.00 0.00 0.00 4.09
92 93 0.676151 CTCCCCACTTTGCTCTGCTC 60.676 60.000 0.00 0.00 0.00 4.26
93 94 1.377994 CTCCCCACTTTGCTCTGCT 59.622 57.895 0.00 0.00 0.00 4.24
94 95 1.073897 ACTCCCCACTTTGCTCTGC 59.926 57.895 0.00 0.00 0.00 4.26
95 96 0.397941 TCACTCCCCACTTTGCTCTG 59.602 55.000 0.00 0.00 0.00 3.35
96 97 0.689623 CTCACTCCCCACTTTGCTCT 59.310 55.000 0.00 0.00 0.00 4.09
97 98 0.957888 GCTCACTCCCCACTTTGCTC 60.958 60.000 0.00 0.00 0.00 4.26
98 99 1.073897 GCTCACTCCCCACTTTGCT 59.926 57.895 0.00 0.00 0.00 3.91
99 100 0.957888 GAGCTCACTCCCCACTTTGC 60.958 60.000 9.40 0.00 36.90 3.68
100 101 0.671781 CGAGCTCACTCCCCACTTTG 60.672 60.000 15.40 0.00 40.03 2.77
101 102 1.674057 CGAGCTCACTCCCCACTTT 59.326 57.895 15.40 0.00 40.03 2.66
102 103 2.286523 CCGAGCTCACTCCCCACTT 61.287 63.158 15.40 0.00 40.03 3.16
103 104 2.681778 CCGAGCTCACTCCCCACT 60.682 66.667 15.40 0.00 40.03 4.00
104 105 3.775654 CCCGAGCTCACTCCCCAC 61.776 72.222 15.40 0.00 40.03 4.61
107 108 4.779733 TCCCCCGAGCTCACTCCC 62.780 72.222 15.40 0.00 40.03 4.30
108 109 3.151022 CTCCCCCGAGCTCACTCC 61.151 72.222 15.40 0.00 40.03 3.85
109 110 2.043852 TCTCCCCCGAGCTCACTC 60.044 66.667 15.40 0.00 39.75 3.51
110 111 2.043450 CTCTCCCCCGAGCTCACT 60.043 66.667 15.40 0.00 35.94 3.41
111 112 2.363147 ACTCTCCCCCGAGCTCAC 60.363 66.667 15.40 0.00 35.94 3.51
112 113 2.363018 CACTCTCCCCCGAGCTCA 60.363 66.667 15.40 0.00 35.94 4.26
113 114 2.043852 TCACTCTCCCCCGAGCTC 60.044 66.667 2.73 2.73 35.94 4.09
114 115 2.043450 CTCACTCTCCCCCGAGCT 60.043 66.667 0.00 0.00 35.94 4.09
115 116 3.151022 CCTCACTCTCCCCCGAGC 61.151 72.222 0.00 0.00 35.94 5.03
116 117 2.443016 CCCTCACTCTCCCCCGAG 60.443 72.222 0.00 0.00 37.48 4.63
117 118 2.944954 TCCCTCACTCTCCCCCGA 60.945 66.667 0.00 0.00 0.00 5.14
118 119 2.443016 CTCCCTCACTCTCCCCCG 60.443 72.222 0.00 0.00 0.00 5.73
119 120 2.766229 GCTCCCTCACTCTCCCCC 60.766 72.222 0.00 0.00 0.00 5.40
120 121 2.039624 TGCTCCCTCACTCTCCCC 59.960 66.667 0.00 0.00 0.00 4.81
121 122 2.063378 CCTGCTCCCTCACTCTCCC 61.063 68.421 0.00 0.00 0.00 4.30
122 123 1.305718 ACCTGCTCCCTCACTCTCC 60.306 63.158 0.00 0.00 0.00 3.71
123 124 1.612395 CCACCTGCTCCCTCACTCTC 61.612 65.000 0.00 0.00 0.00 3.20
124 125 1.611851 CCACCTGCTCCCTCACTCT 60.612 63.158 0.00 0.00 0.00 3.24
125 126 2.664081 CCCACCTGCTCCCTCACTC 61.664 68.421 0.00 0.00 0.00 3.51
126 127 2.608988 CCCACCTGCTCCCTCACT 60.609 66.667 0.00 0.00 0.00 3.41
127 128 3.721706 CCCCACCTGCTCCCTCAC 61.722 72.222 0.00 0.00 0.00 3.51
128 129 3.940480 TCCCCACCTGCTCCCTCA 61.940 66.667 0.00 0.00 0.00 3.86
129 130 3.403558 GTCCCCACCTGCTCCCTC 61.404 72.222 0.00 0.00 0.00 4.30
132 133 3.775654 CTCGTCCCCACCTGCTCC 61.776 72.222 0.00 0.00 0.00 4.70
133 134 4.459089 GCTCGTCCCCACCTGCTC 62.459 72.222 0.00 0.00 0.00 4.26
150 151 2.504274 TATAAGCTGGCCGACCGGG 61.504 63.158 6.32 0.00 43.31 5.73
151 152 1.300697 GTATAAGCTGGCCGACCGG 60.301 63.158 0.00 0.00 46.21 5.28
152 153 1.300697 GGTATAAGCTGGCCGACCG 60.301 63.158 0.00 0.00 39.70 4.79
153 154 0.249911 CAGGTATAAGCTGGCCGACC 60.250 60.000 0.00 0.00 39.87 4.79
154 155 3.290776 CAGGTATAAGCTGGCCGAC 57.709 57.895 0.00 0.00 39.87 4.79
160 161 2.868044 GCATCGGACCAGGTATAAGCTG 60.868 54.545 0.00 0.00 42.96 4.24
161 162 1.344763 GCATCGGACCAGGTATAAGCT 59.655 52.381 0.00 0.00 0.00 3.74
162 163 1.797025 GCATCGGACCAGGTATAAGC 58.203 55.000 0.00 0.00 0.00 3.09
163 164 2.065993 CGCATCGGACCAGGTATAAG 57.934 55.000 0.00 0.00 0.00 1.73
187 188 4.736896 GTCGCACCTGGTCGGACC 62.737 72.222 20.36 20.36 39.22 4.46
188 189 4.736896 GGTCGCACCTGGTCGGAC 62.737 72.222 15.16 15.16 34.73 4.79
207 208 4.842091 CGTTAGACCCGGCCGTCG 62.842 72.222 26.12 16.35 37.85 5.12
208 209 4.503314 CCGTTAGACCCGGCCGTC 62.503 72.222 26.12 16.46 38.85 4.79
214 215 4.124351 TCGCAGCCGTTAGACCCG 62.124 66.667 0.00 0.00 35.54 5.28
215 216 2.202756 CTCGCAGCCGTTAGACCC 60.203 66.667 0.00 0.00 35.54 4.46
216 217 2.202756 CCTCGCAGCCGTTAGACC 60.203 66.667 0.00 0.00 35.54 3.85
217 218 2.202756 CCCTCGCAGCCGTTAGAC 60.203 66.667 0.00 0.00 35.54 2.59
218 219 2.361992 TCCCTCGCAGCCGTTAGA 60.362 61.111 0.00 0.00 35.54 2.10
219 220 2.105128 CTCCCTCGCAGCCGTTAG 59.895 66.667 0.00 0.00 35.54 2.34
220 221 4.143333 GCTCCCTCGCAGCCGTTA 62.143 66.667 0.00 0.00 35.54 3.18
230 231 4.893601 GGCTAACGGCGCTCCCTC 62.894 72.222 6.90 0.00 42.94 4.30
248 249 3.116531 GTGGACGCCAGCGGTAAC 61.117 66.667 17.33 7.19 44.69 2.50
249 250 4.382320 GGTGGACGCCAGCGGTAA 62.382 66.667 17.33 0.00 42.21 2.85
263 264 1.973281 GTGGCCCACATGTCAGGTG 60.973 63.158 9.55 10.67 34.08 4.00
264 265 2.156098 AGTGGCCCACATGTCAGGT 61.156 57.895 17.80 0.00 36.74 4.00
265 266 1.676635 CAGTGGCCCACATGTCAGG 60.677 63.158 17.80 0.38 36.74 3.86
266 267 2.338015 GCAGTGGCCCACATGTCAG 61.338 63.158 17.80 0.00 36.74 3.51
267 268 2.282391 GCAGTGGCCCACATGTCA 60.282 61.111 17.80 0.00 36.74 3.58
268 269 2.034687 AGCAGTGGCCCACATGTC 59.965 61.111 17.80 7.85 42.56 3.06
269 270 2.282674 CAGCAGTGGCCCACATGT 60.283 61.111 17.80 0.00 42.56 3.21
270 271 2.282674 ACAGCAGTGGCCCACATG 60.283 61.111 17.80 13.80 42.56 3.21
271 272 2.034687 GACAGCAGTGGCCCACAT 59.965 61.111 17.80 0.00 42.56 3.21
272 273 3.480679 CTGACAGCAGTGGCCCACA 62.481 63.158 17.80 0.00 42.56 4.17
273 274 2.670934 CTGACAGCAGTGGCCCAC 60.671 66.667 5.50 5.50 42.56 4.61
274 275 1.993701 TTTCTGACAGCAGTGGCCCA 61.994 55.000 0.00 0.00 42.84 5.36
275 276 1.228245 TTTCTGACAGCAGTGGCCC 60.228 57.895 0.00 0.00 42.84 5.80
276 277 1.845809 CGTTTCTGACAGCAGTGGCC 61.846 60.000 0.00 0.00 42.84 5.36
277 278 1.571460 CGTTTCTGACAGCAGTGGC 59.429 57.895 0.00 0.00 42.84 5.01
278 279 1.230635 CCCGTTTCTGACAGCAGTGG 61.231 60.000 0.00 0.00 42.84 4.00
279 280 0.532862 ACCCGTTTCTGACAGCAGTG 60.533 55.000 0.00 0.00 42.84 3.66
280 281 0.180406 AACCCGTTTCTGACAGCAGT 59.820 50.000 0.00 0.00 42.84 4.40
281 282 1.308998 AAACCCGTTTCTGACAGCAG 58.691 50.000 0.00 0.00 43.67 4.24
282 283 2.623878 TAAACCCGTTTCTGACAGCA 57.376 45.000 0.00 0.00 34.23 4.41
283 284 3.624900 GTTTAAACCCGTTTCTGACAGC 58.375 45.455 7.12 0.00 34.23 4.40
284 285 3.847105 GCGTTTAAACCCGTTTCTGACAG 60.847 47.826 12.66 0.00 34.23 3.51
285 286 2.031930 GCGTTTAAACCCGTTTCTGACA 59.968 45.455 12.66 0.00 34.23 3.58
286 287 2.288729 AGCGTTTAAACCCGTTTCTGAC 59.711 45.455 12.66 0.00 34.23 3.51
287 288 2.545106 GAGCGTTTAAACCCGTTTCTGA 59.455 45.455 12.66 0.00 34.23 3.27
288 289 2.546789 AGAGCGTTTAAACCCGTTTCTG 59.453 45.455 12.66 0.00 34.23 3.02
289 290 2.842457 AGAGCGTTTAAACCCGTTTCT 58.158 42.857 12.66 7.04 34.23 2.52
290 291 4.730600 TTAGAGCGTTTAAACCCGTTTC 57.269 40.909 12.66 5.14 34.23 2.78
291 292 5.273170 GTTTTAGAGCGTTTAAACCCGTTT 58.727 37.500 12.66 0.00 36.63 3.60
292 293 4.552572 CGTTTTAGAGCGTTTAAACCCGTT 60.553 41.667 12.66 0.00 0.00 4.44
293 294 3.059665 CGTTTTAGAGCGTTTAAACCCGT 60.060 43.478 12.66 0.00 0.00 5.28
294 295 3.472431 CGTTTTAGAGCGTTTAAACCCG 58.528 45.455 12.66 3.39 0.00 5.28
295 296 3.250762 ACCGTTTTAGAGCGTTTAAACCC 59.749 43.478 12.66 3.75 0.00 4.11
296 297 4.024977 TGACCGTTTTAGAGCGTTTAAACC 60.025 41.667 12.66 5.83 0.00 3.27
297 298 5.081888 TGACCGTTTTAGAGCGTTTAAAC 57.918 39.130 8.35 8.35 0.00 2.01
298 299 5.731599 TTGACCGTTTTAGAGCGTTTAAA 57.268 34.783 0.00 0.00 0.00 1.52
299 300 5.927954 ATTGACCGTTTTAGAGCGTTTAA 57.072 34.783 0.00 0.00 0.00 1.52
300 301 5.388682 CGAATTGACCGTTTTAGAGCGTTTA 60.389 40.000 0.00 0.00 0.00 2.01
301 302 4.609783 CGAATTGACCGTTTTAGAGCGTTT 60.610 41.667 0.00 0.00 0.00 3.60
302 303 3.120786 CGAATTGACCGTTTTAGAGCGTT 60.121 43.478 0.00 0.00 0.00 4.84
303 304 2.410730 CGAATTGACCGTTTTAGAGCGT 59.589 45.455 0.00 0.00 0.00 5.07
304 305 2.410730 ACGAATTGACCGTTTTAGAGCG 59.589 45.455 0.00 0.00 36.83 5.03
305 306 3.430895 TGACGAATTGACCGTTTTAGAGC 59.569 43.478 0.00 0.00 40.67 4.09
306 307 5.176958 AGTTGACGAATTGACCGTTTTAGAG 59.823 40.000 0.00 0.00 40.67 2.43
307 308 5.051816 AGTTGACGAATTGACCGTTTTAGA 58.948 37.500 0.00 0.00 40.67 2.10
308 309 5.338614 AGTTGACGAATTGACCGTTTTAG 57.661 39.130 0.00 0.00 40.67 1.85
309 310 5.503498 CAAGTTGACGAATTGACCGTTTTA 58.497 37.500 0.00 0.00 40.67 1.52
310 311 4.347813 CAAGTTGACGAATTGACCGTTTT 58.652 39.130 0.00 0.00 40.67 2.43
311 312 3.242936 CCAAGTTGACGAATTGACCGTTT 60.243 43.478 3.87 0.00 40.67 3.60
312 313 2.289547 CCAAGTTGACGAATTGACCGTT 59.710 45.455 3.87 0.00 40.67 4.44
313 314 1.871039 CCAAGTTGACGAATTGACCGT 59.129 47.619 3.87 0.00 43.56 4.83
314 315 1.871039 ACCAAGTTGACGAATTGACCG 59.129 47.619 3.87 0.00 0.00 4.79
315 316 4.062991 ACTACCAAGTTGACGAATTGACC 58.937 43.478 3.87 0.00 29.00 4.02
316 317 5.668558 AACTACCAAGTTGACGAATTGAC 57.331 39.130 3.87 0.00 44.40 3.18
317 318 6.687081 AAAACTACCAAGTTGACGAATTGA 57.313 33.333 3.87 0.00 45.37 2.57
318 319 8.126700 ACTAAAAACTACCAAGTTGACGAATTG 58.873 33.333 3.87 0.00 45.37 2.32
319 320 8.217131 ACTAAAAACTACCAAGTTGACGAATT 57.783 30.769 3.87 0.00 45.37 2.17
320 321 7.496591 TGACTAAAAACTACCAAGTTGACGAAT 59.503 33.333 3.87 0.00 45.37 3.34
321 322 6.817641 TGACTAAAAACTACCAAGTTGACGAA 59.182 34.615 3.87 0.00 45.37 3.85
322 323 6.256321 GTGACTAAAAACTACCAAGTTGACGA 59.744 38.462 3.87 0.00 45.37 4.20
323 324 6.036300 TGTGACTAAAAACTACCAAGTTGACG 59.964 38.462 3.87 0.00 45.37 4.35
324 325 7.184779 GTGTGACTAAAAACTACCAAGTTGAC 58.815 38.462 3.87 0.00 45.37 3.18
325 326 6.036300 CGTGTGACTAAAAACTACCAAGTTGA 59.964 38.462 3.87 0.00 45.37 3.18
326 327 6.189567 CGTGTGACTAAAAACTACCAAGTTG 58.810 40.000 0.00 0.00 45.37 3.16
328 329 4.271776 GCGTGTGACTAAAAACTACCAAGT 59.728 41.667 0.00 0.00 37.65 3.16
329 330 4.510340 AGCGTGTGACTAAAAACTACCAAG 59.490 41.667 0.00 0.00 0.00 3.61
330 331 4.444536 AGCGTGTGACTAAAAACTACCAA 58.555 39.130 0.00 0.00 0.00 3.67
331 332 4.062677 AGCGTGTGACTAAAAACTACCA 57.937 40.909 0.00 0.00 0.00 3.25
332 333 4.084171 GGAAGCGTGTGACTAAAAACTACC 60.084 45.833 0.00 0.00 0.00 3.18
333 334 4.508861 TGGAAGCGTGTGACTAAAAACTAC 59.491 41.667 0.00 0.00 0.00 2.73
334 335 4.695396 TGGAAGCGTGTGACTAAAAACTA 58.305 39.130 0.00 0.00 0.00 2.24
335 336 3.537580 TGGAAGCGTGTGACTAAAAACT 58.462 40.909 0.00 0.00 0.00 2.66
336 337 3.955771 TGGAAGCGTGTGACTAAAAAC 57.044 42.857 0.00 0.00 0.00 2.43
337 338 5.508200 AATTGGAAGCGTGTGACTAAAAA 57.492 34.783 0.00 0.00 0.00 1.94
338 339 5.508200 AAATTGGAAGCGTGTGACTAAAA 57.492 34.783 0.00 0.00 0.00 1.52
339 340 5.508200 AAAATTGGAAGCGTGTGACTAAA 57.492 34.783 0.00 0.00 0.00 1.85
340 341 5.508200 AAAAATTGGAAGCGTGTGACTAA 57.492 34.783 0.00 0.00 0.00 2.24
359 360 6.969993 AAAGTGGCTGATAACTACCAAAAA 57.030 33.333 0.00 0.00 33.03 1.94
360 361 6.969993 AAAAGTGGCTGATAACTACCAAAA 57.030 33.333 0.00 0.00 33.03 2.44
361 362 8.466617 TTTAAAAGTGGCTGATAACTACCAAA 57.533 30.769 0.00 0.00 33.03 3.28
362 363 8.466617 TTTTAAAAGTGGCTGATAACTACCAA 57.533 30.769 0.00 0.00 33.03 3.67
363 364 8.466617 TTTTTAAAAGTGGCTGATAACTACCA 57.533 30.769 0.14 0.00 0.00 3.25
385 386 4.204799 GTCCCACAGAACTACCACTTTTT 58.795 43.478 0.00 0.00 0.00 1.94
386 387 3.743269 CGTCCCACAGAACTACCACTTTT 60.743 47.826 0.00 0.00 0.00 2.27
387 388 2.224209 CGTCCCACAGAACTACCACTTT 60.224 50.000 0.00 0.00 0.00 2.66
388 389 1.343465 CGTCCCACAGAACTACCACTT 59.657 52.381 0.00 0.00 0.00 3.16
389 390 0.966920 CGTCCCACAGAACTACCACT 59.033 55.000 0.00 0.00 0.00 4.00
390 391 0.037605 CCGTCCCACAGAACTACCAC 60.038 60.000 0.00 0.00 0.00 4.16
391 392 0.178955 TCCGTCCCACAGAACTACCA 60.179 55.000 0.00 0.00 0.00 3.25
392 393 0.971386 TTCCGTCCCACAGAACTACC 59.029 55.000 0.00 0.00 0.00 3.18
393 394 1.672145 GCTTCCGTCCCACAGAACTAC 60.672 57.143 0.00 0.00 0.00 2.73
394 395 0.606604 GCTTCCGTCCCACAGAACTA 59.393 55.000 0.00 0.00 0.00 2.24
395 396 1.371558 GCTTCCGTCCCACAGAACT 59.628 57.895 0.00 0.00 0.00 3.01
396 397 1.671379 GGCTTCCGTCCCACAGAAC 60.671 63.158 0.00 0.00 0.00 3.01
397 398 1.827399 GAGGCTTCCGTCCCACAGAA 61.827 60.000 0.00 0.00 0.00 3.02
398 399 2.203788 AGGCTTCCGTCCCACAGA 60.204 61.111 0.00 0.00 0.00 3.41
399 400 2.111999 TTGAGGCTTCCGTCCCACAG 62.112 60.000 0.00 0.00 0.00 3.66
400 401 1.488705 ATTGAGGCTTCCGTCCCACA 61.489 55.000 0.00 0.00 0.00 4.17
401 402 0.322546 AATTGAGGCTTCCGTCCCAC 60.323 55.000 0.00 0.00 0.00 4.61
402 403 0.035439 GAATTGAGGCTTCCGTCCCA 60.035 55.000 0.00 0.00 0.00 4.37
403 404 0.035439 TGAATTGAGGCTTCCGTCCC 60.035 55.000 0.00 0.00 0.00 4.46
404 405 1.373570 CTGAATTGAGGCTTCCGTCC 58.626 55.000 0.00 0.00 0.00 4.79
405 406 1.339151 ACCTGAATTGAGGCTTCCGTC 60.339 52.381 11.29 0.00 36.46 4.79
406 407 0.693049 ACCTGAATTGAGGCTTCCGT 59.307 50.000 11.29 0.00 36.46 4.69
407 408 2.093447 ACTACCTGAATTGAGGCTTCCG 60.093 50.000 11.29 0.00 36.46 4.30
408 409 3.636153 ACTACCTGAATTGAGGCTTCC 57.364 47.619 11.29 0.00 36.46 3.46
409 410 5.966742 AAAACTACCTGAATTGAGGCTTC 57.033 39.130 11.29 0.00 36.46 3.86
429 430 7.517321 GCAAAAATCTGAGTGTTTGACAAAAA 58.483 30.769 1.27 0.00 33.70 1.94
430 431 6.183360 CGCAAAAATCTGAGTGTTTGACAAAA 60.183 34.615 1.27 0.00 33.70 2.44
431 432 5.288232 CGCAAAAATCTGAGTGTTTGACAAA 59.712 36.000 12.15 0.00 33.70 2.83
432 433 4.797868 CGCAAAAATCTGAGTGTTTGACAA 59.202 37.500 12.15 0.00 33.70 3.18
433 434 4.142491 ACGCAAAAATCTGAGTGTTTGACA 60.142 37.500 12.15 0.00 33.70 3.58
434 435 4.204978 CACGCAAAAATCTGAGTGTTTGAC 59.795 41.667 12.15 5.45 40.84 3.18
435 436 4.350346 CACGCAAAAATCTGAGTGTTTGA 58.650 39.130 12.15 0.00 40.84 2.69
436 437 3.486841 CCACGCAAAAATCTGAGTGTTTG 59.513 43.478 6.70 6.27 43.26 2.93
437 438 3.490761 CCCACGCAAAAATCTGAGTGTTT 60.491 43.478 6.70 0.00 43.26 2.83
438 439 2.034558 CCCACGCAAAAATCTGAGTGTT 59.965 45.455 6.70 0.00 43.26 3.32
439 440 1.608590 CCCACGCAAAAATCTGAGTGT 59.391 47.619 6.70 0.00 43.26 3.55
440 441 1.666888 GCCCACGCAAAAATCTGAGTG 60.667 52.381 1.09 1.09 44.07 3.51
441 442 0.598065 GCCCACGCAAAAATCTGAGT 59.402 50.000 0.00 0.00 34.03 3.41
442 443 0.597568 TGCCCACGCAAAAATCTGAG 59.402 50.000 0.00 0.00 43.74 3.35
443 444 2.725811 TGCCCACGCAAAAATCTGA 58.274 47.368 0.00 0.00 43.74 3.27
1207 1230 1.558167 TTGTAAGGAGGCGCCATGGA 61.558 55.000 31.54 6.59 40.02 3.41
1416 1444 5.798125 TGAAGCCAACCAATACAATTTCA 57.202 34.783 0.00 0.00 0.00 2.69
1483 1515 5.353394 ACCTGTTGAAGAACACTAGAACA 57.647 39.130 0.00 0.00 37.15 3.18
1484 1516 7.760340 CCTATACCTGTTGAAGAACACTAGAAC 59.240 40.741 0.00 0.00 37.15 3.01
1485 1517 7.672660 TCCTATACCTGTTGAAGAACACTAGAA 59.327 37.037 0.00 0.00 37.15 2.10
1486 1518 7.179966 TCCTATACCTGTTGAAGAACACTAGA 58.820 38.462 0.00 0.00 37.15 2.43
1487 1519 7.406031 TCCTATACCTGTTGAAGAACACTAG 57.594 40.000 0.00 0.00 37.15 2.57
1488 1520 7.973048 ATCCTATACCTGTTGAAGAACACTA 57.027 36.000 0.00 0.00 37.15 2.74
1489 1521 6.875972 ATCCTATACCTGTTGAAGAACACT 57.124 37.500 0.00 0.00 37.15 3.55
1490 1522 6.696148 CGTATCCTATACCTGTTGAAGAACAC 59.304 42.308 0.00 0.00 37.15 3.32
1875 1926 4.261994 CCTTTCAGCTGTAGAGGATAGAGC 60.262 50.000 20.71 0.00 34.47 4.09
2113 2181 0.166814 GCTTGTCTCGCGCAAAATCT 59.833 50.000 8.75 0.00 0.00 2.40
2809 2928 8.469200 CATCAATGTTAAATATGTGACCACCTT 58.531 33.333 0.00 0.00 0.00 3.50
3416 3550 6.770785 TGAGGTTACAATACAGCAAAGAGTTT 59.229 34.615 0.00 0.00 0.00 2.66
3461 3595 5.960113 TGTACTGTTGAATGTTTGTGCTTT 58.040 33.333 0.00 0.00 0.00 3.51
3530 3664 2.024176 TGAGGGAGCAACTACTTGGA 57.976 50.000 0.00 0.00 0.00 3.53
3872 4023 3.681417 TCACTTCATTCATCTGCAACTCG 59.319 43.478 0.00 0.00 0.00 4.18
3919 4070 2.570386 AAGGGTGGAGCTGTATACCT 57.430 50.000 0.00 0.00 33.71 3.08
3995 5603 7.713942 AGTTAGTTAAACCACACCAACTTCTAG 59.286 37.037 0.00 0.00 39.03 2.43
4232 5851 7.102346 TGGCAAAAAGAAAAAGAATGTCAGAA 58.898 30.769 0.00 0.00 0.00 3.02
4233 5852 6.638610 TGGCAAAAAGAAAAAGAATGTCAGA 58.361 32.000 0.00 0.00 0.00 3.27
4234 5853 6.907206 TGGCAAAAAGAAAAAGAATGTCAG 57.093 33.333 0.00 0.00 0.00 3.51
4235 5854 7.336427 ACAATGGCAAAAAGAAAAAGAATGTCA 59.664 29.630 0.00 0.00 0.00 3.58
4343 5962 1.800655 CGTAGCTCTCACCACATCAGC 60.801 57.143 0.00 0.00 0.00 4.26
4840 6499 8.394971 TCATTAACAGATATCCATCGCAAATT 57.605 30.769 0.00 0.00 36.20 1.82
4943 6605 9.912634 AACCTGTTTTAATAGTCAACATTGATG 57.087 29.630 0.00 0.00 39.73 3.07
5635 7329 2.756760 GCATGCCTTTCAATGAAGAGGA 59.243 45.455 20.54 8.93 0.00 3.71
6039 7748 9.969001 AGTTCTTGTAAGAGACTAGAGATACTT 57.031 33.333 0.00 0.00 40.38 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.