Multiple sequence alignment - TraesCS4A01G261100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G261100 chr4A 100.000 2219 0 0 1 2219 573368663 573366445 0.000000e+00 4098.0
1 TraesCS4A01G261100 chr4A 79.507 1054 146 30 412 1410 519175797 519176835 0.000000e+00 686.0
2 TraesCS4A01G261100 chr4D 91.137 1196 85 11 532 1718 29796248 29797431 0.000000e+00 1602.0
3 TraesCS4A01G261100 chr4D 94.444 144 5 1 2079 2219 29797482 29797625 3.710000e-53 219.0
4 TraesCS4A01G261100 chr4D 98.148 54 0 1 1994 2046 29797438 29797491 2.350000e-15 93.5
5 TraesCS4A01G261100 chr2D 85.927 1208 134 13 5 1179 416930396 416931600 0.000000e+00 1256.0
6 TraesCS4A01G261100 chr2D 81.593 1532 227 32 5 1486 316243656 316242130 0.000000e+00 1216.0
7 TraesCS4A01G261100 chr2D 85.034 1176 136 19 5 1150 83046819 83047984 0.000000e+00 1160.0
8 TraesCS4A01G261100 chr3B 84.609 1202 163 15 1 1185 360086460 360087656 0.000000e+00 1175.0
9 TraesCS4A01G261100 chr3B 83.279 305 38 7 1 301 254193999 254194294 3.630000e-68 268.0
10 TraesCS4A01G261100 chr3B 78.893 289 45 9 1114 1389 724606039 724605754 4.870000e-42 182.0
11 TraesCS4A01G261100 chr7B 82.446 1390 198 26 1 1354 603204986 603203607 0.000000e+00 1173.0
12 TraesCS4A01G261100 chr3D 84.328 1206 168 15 1 1190 140433704 140432504 0.000000e+00 1160.0
13 TraesCS4A01G261100 chr6B 81.085 1512 217 44 1 1466 694261120 694262608 0.000000e+00 1144.0
14 TraesCS4A01G261100 chr6B 81.585 1325 201 23 1 1294 437891587 437892899 0.000000e+00 1055.0
15 TraesCS4A01G261100 chr6B 96.751 277 6 3 1732 2006 237138444 237138719 2.010000e-125 459.0
16 TraesCS4A01G261100 chr5D 85.585 1103 126 16 57 1150 105097976 105099054 0.000000e+00 1125.0
17 TraesCS4A01G261100 chrUn 98.113 265 5 0 1730 1994 441527006 441527270 1.550000e-126 462.0
18 TraesCS4A01G261100 chr4B 98.099 263 5 0 1732 1994 217743818 217744080 2.010000e-125 459.0
19 TraesCS4A01G261100 chr4B 93.506 231 9 3 1995 2219 42316402 42316632 2.730000e-89 339.0
20 TraesCS4A01G261100 chr4B 82.724 301 38 7 1425 1718 42316101 42316394 2.830000e-64 255.0
21 TraesCS4A01G261100 chr1B 97.398 269 6 1 1727 1994 265967064 265967332 7.220000e-125 457.0
22 TraesCS4A01G261100 chr1B 96.390 277 7 2 1732 2007 44931056 44930782 9.340000e-124 453.0
23 TraesCS4A01G261100 chr1B 85.629 167 19 3 1180 1342 442948704 442948869 1.050000e-38 171.0
24 TraesCS4A01G261100 chr2A 97.727 264 6 0 1731 1994 56879856 56880119 2.600000e-124 455.0
25 TraesCS4A01G261100 chr7A 97.719 263 6 0 1732 1994 63365846 63366108 9.340000e-124 453.0
26 TraesCS4A01G261100 chr2B 97.719 263 6 0 1730 1992 485036733 485036471 9.340000e-124 453.0
27 TraesCS4A01G261100 chr3A 97.358 265 7 0 1730 1994 41099588 41099324 3.360000e-123 451.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G261100 chr4A 573366445 573368663 2218 True 4098.000000 4098 100.000000 1 2219 1 chr4A.!!$R1 2218
1 TraesCS4A01G261100 chr4A 519175797 519176835 1038 False 686.000000 686 79.507000 412 1410 1 chr4A.!!$F1 998
2 TraesCS4A01G261100 chr4D 29796248 29797625 1377 False 638.166667 1602 94.576333 532 2219 3 chr4D.!!$F1 1687
3 TraesCS4A01G261100 chr2D 416930396 416931600 1204 False 1256.000000 1256 85.927000 5 1179 1 chr2D.!!$F2 1174
4 TraesCS4A01G261100 chr2D 316242130 316243656 1526 True 1216.000000 1216 81.593000 5 1486 1 chr2D.!!$R1 1481
5 TraesCS4A01G261100 chr2D 83046819 83047984 1165 False 1160.000000 1160 85.034000 5 1150 1 chr2D.!!$F1 1145
6 TraesCS4A01G261100 chr3B 360086460 360087656 1196 False 1175.000000 1175 84.609000 1 1185 1 chr3B.!!$F2 1184
7 TraesCS4A01G261100 chr7B 603203607 603204986 1379 True 1173.000000 1173 82.446000 1 1354 1 chr7B.!!$R1 1353
8 TraesCS4A01G261100 chr3D 140432504 140433704 1200 True 1160.000000 1160 84.328000 1 1190 1 chr3D.!!$R1 1189
9 TraesCS4A01G261100 chr6B 694261120 694262608 1488 False 1144.000000 1144 81.085000 1 1466 1 chr6B.!!$F3 1465
10 TraesCS4A01G261100 chr6B 437891587 437892899 1312 False 1055.000000 1055 81.585000 1 1294 1 chr6B.!!$F2 1293
11 TraesCS4A01G261100 chr5D 105097976 105099054 1078 False 1125.000000 1125 85.585000 57 1150 1 chr5D.!!$F1 1093
12 TraesCS4A01G261100 chr4B 42316101 42316632 531 False 297.000000 339 88.115000 1425 2219 2 chr4B.!!$F2 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 813 0.771755 GACCCAACCCAAGAACCTCT 59.228 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2128 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.0 0.0 0.0 0.0 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.601759 CCACCCAGTCTGGCAACTG 60.602 63.158 13.99 17.44 45.10 3.16
200 230 3.555168 GGCGATCCGAATAAGAAGGACAT 60.555 47.826 0.00 0.00 36.81 3.06
222 252 3.225104 AGGAGAAAGCTTCAACATGCAA 58.775 40.909 0.00 0.00 0.00 4.08
225 255 4.261741 GGAGAAAGCTTCAACATGCAAGAA 60.262 41.667 0.00 0.00 0.00 2.52
229 259 3.216800 AGCTTCAACATGCAAGAAGACA 58.783 40.909 20.27 0.00 40.85 3.41
231 261 4.098349 AGCTTCAACATGCAAGAAGACAAA 59.902 37.500 20.27 0.00 40.85 2.83
324 354 7.161773 CTTTTGGAGGAACATTCACATATGT 57.838 36.000 1.41 1.41 40.37 2.29
359 389 1.009829 CATTTCACGCCCTACTCTGC 58.990 55.000 0.00 0.00 0.00 4.26
401 431 2.044793 TGGAAGTCCCTCAACCATCT 57.955 50.000 0.00 0.00 35.38 2.90
404 434 4.111577 TGGAAGTCCCTCAACCATCTATT 58.888 43.478 0.00 0.00 35.38 1.73
468 498 3.276857 GAAGCATCTCATCACATGGTGT 58.723 45.455 0.00 0.00 34.79 4.16
505 535 2.750948 TCACCGAGCAAGTAAGTTGAC 58.249 47.619 0.00 0.00 38.60 3.18
542 573 7.986085 ATGCTTAGTTTTGTTGATCACTAGT 57.014 32.000 0.00 0.00 0.00 2.57
647 678 5.875359 GTGGTGTATAAGAAGTTGGAGAAGG 59.125 44.000 0.00 0.00 0.00 3.46
682 713 5.512788 CGTCATGCATTATTGGTTGAAGTTC 59.487 40.000 0.00 0.00 0.00 3.01
780 813 0.771755 GACCCAACCCAAGAACCTCT 59.228 55.000 0.00 0.00 0.00 3.69
910 947 1.356124 AGGAGAGGCATGTGTGAAGT 58.644 50.000 0.00 0.00 0.00 3.01
1003 1043 1.871418 TGAAGAGAGGAGGACCATGG 58.129 55.000 11.19 11.19 38.94 3.66
1004 1044 0.467804 GAAGAGAGGAGGACCATGGC 59.532 60.000 13.04 4.47 38.94 4.40
1135 1196 2.461110 ATCGTGCAATCCGTTCGCC 61.461 57.895 0.00 0.00 0.00 5.54
1227 1371 0.324943 CAACACCTTGATCGGGGAGT 59.675 55.000 10.23 6.02 0.00 3.85
1233 1377 1.676746 CTTGATCGGGGAGTAGACGA 58.323 55.000 0.00 0.00 41.20 4.20
1300 1444 3.694566 ACTAATGTTCTTTTGGATCCGGC 59.305 43.478 7.39 0.00 0.00 6.13
1363 1508 2.558554 ATATACGATCCGGCGCTGGC 62.559 60.000 31.15 16.56 38.90 4.85
1444 1592 9.890629 AATATATACATGATAGCGTTGAATGGT 57.109 29.630 0.00 0.00 0.00 3.55
1478 1626 0.321653 GTGCCCGTTGACTGATCCTT 60.322 55.000 0.00 0.00 0.00 3.36
1487 1635 2.250924 TGACTGATCCTTCTGTCTGCA 58.749 47.619 12.29 0.00 45.84 4.41
1623 1771 2.540265 TGGCACGCCAAAATGAAAAT 57.460 40.000 8.67 0.00 44.12 1.82
1624 1772 2.141517 TGGCACGCCAAAATGAAAATG 58.858 42.857 8.67 0.00 44.12 2.32
1625 1773 2.142319 GGCACGCCAAAATGAAAATGT 58.858 42.857 2.36 0.00 35.81 2.71
1626 1774 2.157474 GGCACGCCAAAATGAAAATGTC 59.843 45.455 2.36 0.00 35.81 3.06
1627 1775 2.159986 GCACGCCAAAATGAAAATGTCG 60.160 45.455 0.00 0.00 0.00 4.35
1628 1776 3.304257 CACGCCAAAATGAAAATGTCGA 58.696 40.909 0.00 0.00 0.00 4.20
1632 1786 6.088749 CACGCCAAAATGAAAATGTCGATTTA 59.911 34.615 0.00 0.00 31.18 1.40
1718 1872 1.591594 CAACTCGTGCGTCACCACT 60.592 57.895 4.73 0.00 33.60 4.00
1719 1873 1.143183 AACTCGTGCGTCACCACTT 59.857 52.632 4.73 0.00 33.60 3.16
1720 1874 0.386476 AACTCGTGCGTCACCACTTA 59.614 50.000 4.73 0.00 33.60 2.24
1724 1878 1.554042 CGTGCGTCACCACTTACCAC 61.554 60.000 4.73 0.00 33.60 4.16
1725 1879 1.300311 TGCGTCACCACTTACCACG 60.300 57.895 0.00 0.00 0.00 4.94
1726 1880 1.007038 GCGTCACCACTTACCACGA 60.007 57.895 0.00 0.00 32.08 4.35
1727 1881 0.389426 GCGTCACCACTTACCACGAT 60.389 55.000 0.00 0.00 32.08 3.73
1728 1882 1.625616 CGTCACCACTTACCACGATC 58.374 55.000 0.00 0.00 32.08 3.69
1729 1883 1.734707 CGTCACCACTTACCACGATCC 60.735 57.143 0.00 0.00 32.08 3.36
1730 1884 1.274167 GTCACCACTTACCACGATCCA 59.726 52.381 0.00 0.00 0.00 3.41
1731 1885 2.093658 GTCACCACTTACCACGATCCAT 60.094 50.000 0.00 0.00 0.00 3.41
1732 1886 3.131577 GTCACCACTTACCACGATCCATA 59.868 47.826 0.00 0.00 0.00 2.74
1733 1887 3.131577 TCACCACTTACCACGATCCATAC 59.868 47.826 0.00 0.00 0.00 2.39
1734 1888 3.132289 CACCACTTACCACGATCCATACT 59.868 47.826 0.00 0.00 0.00 2.12
1735 1889 3.383825 ACCACTTACCACGATCCATACTC 59.616 47.826 0.00 0.00 0.00 2.59
1736 1890 3.243771 CCACTTACCACGATCCATACTCC 60.244 52.174 0.00 0.00 0.00 3.85
1737 1891 2.963782 ACTTACCACGATCCATACTCCC 59.036 50.000 0.00 0.00 0.00 4.30
1738 1892 3.231818 CTTACCACGATCCATACTCCCT 58.768 50.000 0.00 0.00 0.00 4.20
1739 1893 1.705873 ACCACGATCCATACTCCCTC 58.294 55.000 0.00 0.00 0.00 4.30
1740 1894 0.969894 CCACGATCCATACTCCCTCC 59.030 60.000 0.00 0.00 0.00 4.30
1741 1895 0.598562 CACGATCCATACTCCCTCCG 59.401 60.000 0.00 0.00 0.00 4.63
1742 1896 0.539901 ACGATCCATACTCCCTCCGG 60.540 60.000 0.00 0.00 0.00 5.14
1743 1897 0.539901 CGATCCATACTCCCTCCGGT 60.540 60.000 0.00 0.00 0.00 5.28
1744 1898 1.258676 GATCCATACTCCCTCCGGTC 58.741 60.000 0.00 0.00 0.00 4.79
1745 1899 0.178929 ATCCATACTCCCTCCGGTCC 60.179 60.000 0.00 0.00 0.00 4.46
1746 1900 1.233369 CCATACTCCCTCCGGTCCT 59.767 63.158 0.00 0.00 0.00 3.85
1747 1901 0.398664 CCATACTCCCTCCGGTCCTT 60.399 60.000 0.00 0.00 0.00 3.36
1748 1902 1.497161 CATACTCCCTCCGGTCCTTT 58.503 55.000 0.00 0.00 0.00 3.11
1749 1903 1.838077 CATACTCCCTCCGGTCCTTTT 59.162 52.381 0.00 0.00 0.00 2.27
1750 1904 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
1751 1905 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
1752 1906 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
1753 1907 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
1754 1908 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
1755 1909 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
1756 1910 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
1757 1911 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
1758 1912 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
1759 1913 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
1760 1914 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
1761 1915 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
1762 1916 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
1763 1917 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
1764 1918 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
1765 1919 6.202954 CGGTCCTTTTTACTCTGCATATTAGG 59.797 42.308 0.00 0.00 0.00 2.69
1766 1920 7.054751 GGTCCTTTTTACTCTGCATATTAGGT 58.945 38.462 0.00 0.00 0.00 3.08
1767 1921 7.556635 GGTCCTTTTTACTCTGCATATTAGGTT 59.443 37.037 0.00 0.00 0.00 3.50
1768 1922 8.957466 GTCCTTTTTACTCTGCATATTAGGTTT 58.043 33.333 0.00 0.00 0.00 3.27
1769 1923 8.956426 TCCTTTTTACTCTGCATATTAGGTTTG 58.044 33.333 0.00 0.00 0.00 2.93
1770 1924 8.739972 CCTTTTTACTCTGCATATTAGGTTTGT 58.260 33.333 0.00 0.00 0.00 2.83
1771 1925 9.774742 CTTTTTACTCTGCATATTAGGTTTGTC 57.225 33.333 0.00 0.00 0.00 3.18
1772 1926 9.515226 TTTTTACTCTGCATATTAGGTTTGTCT 57.485 29.630 0.00 0.00 0.00 3.41
1773 1927 8.492673 TTTACTCTGCATATTAGGTTTGTCTG 57.507 34.615 0.00 0.00 0.00 3.51
1774 1928 6.299805 ACTCTGCATATTAGGTTTGTCTGA 57.700 37.500 0.00 0.00 0.00 3.27
1775 1929 6.711277 ACTCTGCATATTAGGTTTGTCTGAA 58.289 36.000 0.00 0.00 0.00 3.02
1776 1930 6.820656 ACTCTGCATATTAGGTTTGTCTGAAG 59.179 38.462 0.00 0.00 0.00 3.02
1777 1931 6.711277 TCTGCATATTAGGTTTGTCTGAAGT 58.289 36.000 0.00 0.00 0.00 3.01
1778 1932 6.818644 TCTGCATATTAGGTTTGTCTGAAGTC 59.181 38.462 0.00 0.00 0.00 3.01
1779 1933 6.472016 TGCATATTAGGTTTGTCTGAAGTCA 58.528 36.000 0.00 0.00 0.00 3.41
1780 1934 6.939730 TGCATATTAGGTTTGTCTGAAGTCAA 59.060 34.615 0.00 0.00 0.00 3.18
1781 1935 7.611467 TGCATATTAGGTTTGTCTGAAGTCAAT 59.389 33.333 0.00 0.00 0.00 2.57
1782 1936 8.125448 GCATATTAGGTTTGTCTGAAGTCAATC 58.875 37.037 0.00 0.00 0.00 2.67
1783 1937 9.388506 CATATTAGGTTTGTCTGAAGTCAATCT 57.611 33.333 0.00 0.00 0.00 2.40
1784 1938 7.913674 ATTAGGTTTGTCTGAAGTCAATCTC 57.086 36.000 0.00 0.00 0.00 2.75
1785 1939 5.296151 AGGTTTGTCTGAAGTCAATCTCA 57.704 39.130 0.00 0.00 0.00 3.27
1786 1940 5.874093 AGGTTTGTCTGAAGTCAATCTCAT 58.126 37.500 0.00 0.00 0.00 2.90
1787 1941 5.936956 AGGTTTGTCTGAAGTCAATCTCATC 59.063 40.000 0.00 0.00 0.00 2.92
1788 1942 5.123027 GGTTTGTCTGAAGTCAATCTCATCC 59.877 44.000 0.00 0.00 0.00 3.51
1789 1943 5.488262 TTGTCTGAAGTCAATCTCATCCA 57.512 39.130 0.00 0.00 0.00 3.41
1790 1944 5.488262 TGTCTGAAGTCAATCTCATCCAA 57.512 39.130 0.00 0.00 0.00 3.53
1791 1945 5.240891 TGTCTGAAGTCAATCTCATCCAAC 58.759 41.667 0.00 0.00 0.00 3.77
1792 1946 5.012458 TGTCTGAAGTCAATCTCATCCAACT 59.988 40.000 0.00 0.00 0.00 3.16
1793 1947 5.936956 GTCTGAAGTCAATCTCATCCAACTT 59.063 40.000 0.00 0.00 0.00 2.66
1794 1948 6.429385 GTCTGAAGTCAATCTCATCCAACTTT 59.571 38.462 0.00 0.00 0.00 2.66
1795 1949 6.429078 TCTGAAGTCAATCTCATCCAACTTTG 59.571 38.462 0.00 0.00 0.00 2.77
1796 1950 6.298361 TGAAGTCAATCTCATCCAACTTTGA 58.702 36.000 0.00 0.00 0.00 2.69
1797 1951 6.205464 TGAAGTCAATCTCATCCAACTTTGAC 59.795 38.462 5.67 5.67 41.88 3.18
1798 1952 5.006386 AGTCAATCTCATCCAACTTTGACC 58.994 41.667 9.31 0.00 42.29 4.02
1799 1953 4.761739 GTCAATCTCATCCAACTTTGACCA 59.238 41.667 0.00 0.00 37.86 4.02
1800 1954 5.241506 GTCAATCTCATCCAACTTTGACCAA 59.758 40.000 0.00 0.00 37.86 3.67
1801 1955 5.474532 TCAATCTCATCCAACTTTGACCAAG 59.525 40.000 0.00 0.00 38.64 3.61
1858 2012 9.857656 ACAACACCAATATCATTAGATTCATCT 57.142 29.630 0.00 0.00 40.86 2.90
1860 2014 8.768957 ACACCAATATCATTAGATTCATCTCG 57.231 34.615 0.00 0.00 38.32 4.04
1861 2015 7.821359 ACACCAATATCATTAGATTCATCTCGG 59.179 37.037 0.00 0.00 38.32 4.63
1862 2016 8.037166 CACCAATATCATTAGATTCATCTCGGA 58.963 37.037 0.00 0.00 38.32 4.55
1863 2017 8.597167 ACCAATATCATTAGATTCATCTCGGAA 58.403 33.333 0.00 0.00 38.32 4.30
1864 2018 9.610705 CCAATATCATTAGATTCATCTCGGAAT 57.389 33.333 0.00 0.00 40.10 3.01
1953 2107 6.477669 ACTTAGCTAAGTTTAACTTTCGGC 57.522 37.500 29.48 16.05 43.57 5.54
1954 2108 5.993441 ACTTAGCTAAGTTTAACTTTCGGCA 59.007 36.000 29.48 6.83 43.57 5.69
1955 2109 6.484308 ACTTAGCTAAGTTTAACTTTCGGCAA 59.516 34.615 29.48 12.26 43.57 4.52
1956 2110 5.761165 AGCTAAGTTTAACTTTCGGCAAA 57.239 34.783 15.83 0.00 39.51 3.68
1957 2111 6.327279 AGCTAAGTTTAACTTTCGGCAAAT 57.673 33.333 15.83 1.37 39.51 2.32
1958 2112 6.379386 AGCTAAGTTTAACTTTCGGCAAATC 58.621 36.000 15.83 0.00 39.51 2.17
1959 2113 5.571741 GCTAAGTTTAACTTTCGGCAAATCC 59.428 40.000 15.83 0.00 39.51 3.01
1960 2114 5.523438 AAGTTTAACTTTCGGCAAATCCA 57.477 34.783 4.30 0.00 34.11 3.41
1961 2115 5.523438 AGTTTAACTTTCGGCAAATCCAA 57.477 34.783 0.00 0.00 34.01 3.53
1962 2116 6.096673 AGTTTAACTTTCGGCAAATCCAAT 57.903 33.333 0.00 0.00 34.01 3.16
1963 2117 7.222000 AGTTTAACTTTCGGCAAATCCAATA 57.778 32.000 0.00 0.00 34.01 1.90
1964 2118 7.836842 AGTTTAACTTTCGGCAAATCCAATAT 58.163 30.769 0.00 0.00 34.01 1.28
1965 2119 7.759433 AGTTTAACTTTCGGCAAATCCAATATG 59.241 33.333 0.00 0.00 34.01 1.78
1966 2120 4.045636 ACTTTCGGCAAATCCAATATGC 57.954 40.909 0.00 0.00 39.33 3.14
1967 2121 3.446873 ACTTTCGGCAAATCCAATATGCA 59.553 39.130 0.00 0.00 41.80 3.96
1968 2122 3.713858 TTCGGCAAATCCAATATGCAG 57.286 42.857 0.00 0.00 41.80 4.41
1969 2123 2.929641 TCGGCAAATCCAATATGCAGA 58.070 42.857 0.00 0.00 40.95 4.26
1970 2124 3.286353 TCGGCAAATCCAATATGCAGAA 58.714 40.909 0.00 0.00 40.42 3.02
1971 2125 3.890756 TCGGCAAATCCAATATGCAGAAT 59.109 39.130 0.00 0.00 40.42 2.40
1972 2126 5.069318 TCGGCAAATCCAATATGCAGAATA 58.931 37.500 0.00 0.00 40.42 1.75
1973 2127 5.534278 TCGGCAAATCCAATATGCAGAATAA 59.466 36.000 0.00 0.00 40.42 1.40
1974 2128 6.040278 TCGGCAAATCCAATATGCAGAATAAA 59.960 34.615 0.00 0.00 40.42 1.40
1975 2129 6.700960 CGGCAAATCCAATATGCAGAATAAAA 59.299 34.615 0.00 0.00 41.80 1.52
1976 2130 7.224362 CGGCAAATCCAATATGCAGAATAAAAA 59.776 33.333 0.00 0.00 41.80 1.94
1977 2131 8.553696 GGCAAATCCAATATGCAGAATAAAAAG 58.446 33.333 0.00 0.00 41.80 2.27
1978 2132 8.553696 GCAAATCCAATATGCAGAATAAAAAGG 58.446 33.333 0.00 0.00 39.81 3.11
1979 2133 9.820725 CAAATCCAATATGCAGAATAAAAAGGA 57.179 29.630 0.00 0.00 0.00 3.36
1980 2134 9.822185 AAATCCAATATGCAGAATAAAAAGGAC 57.178 29.630 0.00 0.00 0.00 3.85
1981 2135 7.346751 TCCAATATGCAGAATAAAAAGGACC 57.653 36.000 0.00 0.00 0.00 4.46
1982 2136 6.039270 TCCAATATGCAGAATAAAAAGGACCG 59.961 38.462 0.00 0.00 0.00 4.79
1983 2137 6.208644 CAATATGCAGAATAAAAAGGACCGG 58.791 40.000 0.00 0.00 0.00 5.28
1984 2138 3.426787 TGCAGAATAAAAAGGACCGGA 57.573 42.857 9.46 0.00 0.00 5.14
1985 2139 3.343617 TGCAGAATAAAAAGGACCGGAG 58.656 45.455 9.46 0.00 0.00 4.63
2055 2211 2.436646 CATGGCACGGGACTCCAC 60.437 66.667 0.00 0.00 31.94 4.02
2075 2231 0.257039 GGATGAACCCTGAGCATGGT 59.743 55.000 0.00 0.00 36.06 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 102 4.114997 CGGCGGCCCAATGTTGTC 62.115 66.667 14.55 0.00 0.00 3.18
139 164 1.451567 CGTCCTCGCTGTCCTCCTA 60.452 63.158 0.00 0.00 0.00 2.94
189 217 6.440647 TGAAGCTTTCTCCTATGTCCTTCTTA 59.559 38.462 0.00 0.00 0.00 2.10
200 230 4.019792 TGCATGTTGAAGCTTTCTCCTA 57.980 40.909 0.00 0.00 0.00 2.94
222 252 2.627945 TCGCACAACAGTTTGTCTTCT 58.372 42.857 0.00 0.00 44.57 2.85
225 255 1.002468 GCATCGCACAACAGTTTGTCT 60.002 47.619 0.00 0.00 44.57 3.41
229 259 1.336148 CCATGCATCGCACAACAGTTT 60.336 47.619 0.00 0.00 43.04 2.66
231 261 0.890542 ACCATGCATCGCACAACAGT 60.891 50.000 0.00 0.00 43.04 3.55
324 354 5.231779 CGTGAAATGCTTGTGTTCATGAAAA 59.768 36.000 10.35 0.76 39.56 2.29
359 389 2.525248 CGGTTGTGGATGATCGCGG 61.525 63.158 6.13 0.00 0.00 6.46
401 431 2.769663 ACCTCTTGGATGGCGTACAATA 59.230 45.455 4.50 0.00 37.04 1.90
404 434 0.535335 GACCTCTTGGATGGCGTACA 59.465 55.000 0.00 0.00 37.04 2.90
468 498 0.323302 TGATTTGTGCACCGCTAGGA 59.677 50.000 15.69 0.00 41.02 2.94
505 535 2.563179 ACTAAGCATATCCGGCTAGTGG 59.437 50.000 0.00 0.00 41.66 4.00
542 573 7.812191 GTGAGCAATAAAACAATACATGTCCAA 59.188 33.333 0.00 0.00 42.99 3.53
647 678 2.109126 GCATGACGGTGAAGGGCTC 61.109 63.158 0.00 0.00 0.00 4.70
682 713 2.107950 TCCACTTCGGTTGCCTATTG 57.892 50.000 0.00 0.00 35.57 1.90
798 831 2.056359 TCCACTTCTTCCCCCGTAAAA 58.944 47.619 0.00 0.00 0.00 1.52
837 870 4.451150 CTGCCGCCGCACCTTCTA 62.451 66.667 0.00 0.00 41.12 2.10
857 890 0.898789 ACCTCGAACCACTCCGTCAT 60.899 55.000 0.00 0.00 0.00 3.06
876 909 2.167281 CTCTCCTTCTTCGCCAAGATGA 59.833 50.000 8.28 2.02 38.50 2.92
910 947 0.614697 TCCTCCTTGATGTCCGAGCA 60.615 55.000 0.00 0.00 0.00 4.26
1003 1043 1.002011 AGGCCTTCCTTTCTTCGGC 60.002 57.895 0.00 0.00 40.66 5.54
1004 1044 0.741221 CGAGGCCTTCCTTTCTTCGG 60.741 60.000 6.77 0.00 44.46 4.30
1021 1082 3.804036 TCACCTTCTTTTTCTTGAGCGA 58.196 40.909 0.00 0.00 0.00 4.93
1135 1196 3.754850 TGATCTTTCTGCAACATCTGGTG 59.245 43.478 0.00 0.00 35.41 4.17
1227 1371 0.105964 CCGGCAATCCCAATCGTCTA 59.894 55.000 0.00 0.00 0.00 2.59
1233 1377 2.124320 CGGACCGGCAATCCCAAT 60.124 61.111 5.81 0.00 31.99 3.16
1234 1378 4.418328 CCGGACCGGCAATCCCAA 62.418 66.667 22.37 0.00 41.17 4.12
1300 1444 8.612619 AGTCGAGTATGCTTAATTTTTACATGG 58.387 33.333 0.00 0.00 0.00 3.66
1363 1508 2.027605 ACAGCACGTCAGACCACG 59.972 61.111 0.00 0.00 45.65 4.94
1370 1515 0.319813 CTGATCCACACAGCACGTCA 60.320 55.000 0.00 0.00 0.00 4.35
1418 1564 9.890629 ACCATTCAACGCTATCATGTATATATT 57.109 29.630 0.00 0.00 0.00 1.28
1444 1592 4.351938 CACGGACGCGGAAGGTCA 62.352 66.667 12.47 0.00 36.12 4.02
1467 1615 2.250924 TGCAGACAGAAGGATCAGTCA 58.749 47.619 0.00 0.00 42.71 3.41
1487 1635 6.054295 TGTAAATTTGTTTTTGCATCTGCCT 58.946 32.000 0.00 0.00 41.18 4.75
1497 1645 6.482973 CAGCATGGACCTGTAAATTTGTTTTT 59.517 34.615 0.00 0.00 0.00 1.94
1617 1765 9.958234 TCAGTTCAAAATAAATCGACATTTTCA 57.042 25.926 9.90 0.00 33.23 2.69
1632 1786 9.230122 AGACCAACAAAATTTTCAGTTCAAAAT 57.770 25.926 0.00 0.00 37.53 1.82
1637 1791 6.960992 GCAAAGACCAACAAAATTTTCAGTTC 59.039 34.615 0.00 0.00 0.00 3.01
1653 1807 4.439057 GTCATATCTTACCGCAAAGACCA 58.561 43.478 0.37 0.00 38.28 4.02
1712 1866 2.691409 ATGGATCGTGGTAAGTGGTG 57.309 50.000 0.00 0.00 0.00 4.17
1718 1872 3.228453 GAGGGAGTATGGATCGTGGTAA 58.772 50.000 0.00 0.00 0.00 2.85
1719 1873 2.490351 GGAGGGAGTATGGATCGTGGTA 60.490 54.545 0.00 0.00 0.00 3.25
1720 1874 1.705873 GAGGGAGTATGGATCGTGGT 58.294 55.000 0.00 0.00 0.00 4.16
1737 1891 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
1738 1892 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
1739 1893 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
1740 1894 6.202954 CCTAATATGCAGAGTAAAAAGGACCG 59.797 42.308 0.00 0.00 0.00 4.79
1741 1895 7.054751 ACCTAATATGCAGAGTAAAAAGGACC 58.945 38.462 2.56 0.00 0.00 4.46
1742 1896 8.507524 AACCTAATATGCAGAGTAAAAAGGAC 57.492 34.615 2.56 0.00 0.00 3.85
1743 1897 8.956426 CAAACCTAATATGCAGAGTAAAAAGGA 58.044 33.333 2.56 0.00 0.00 3.36
1744 1898 8.739972 ACAAACCTAATATGCAGAGTAAAAAGG 58.260 33.333 0.00 0.00 0.00 3.11
1745 1899 9.774742 GACAAACCTAATATGCAGAGTAAAAAG 57.225 33.333 0.00 0.00 0.00 2.27
1746 1900 9.515226 AGACAAACCTAATATGCAGAGTAAAAA 57.485 29.630 0.00 0.00 0.00 1.94
1747 1901 8.946085 CAGACAAACCTAATATGCAGAGTAAAA 58.054 33.333 0.00 0.00 0.00 1.52
1748 1902 8.318412 TCAGACAAACCTAATATGCAGAGTAAA 58.682 33.333 0.00 0.00 0.00 2.01
1749 1903 7.847096 TCAGACAAACCTAATATGCAGAGTAA 58.153 34.615 0.00 0.00 0.00 2.24
1750 1904 7.418337 TCAGACAAACCTAATATGCAGAGTA 57.582 36.000 0.00 0.00 0.00 2.59
1751 1905 6.299805 TCAGACAAACCTAATATGCAGAGT 57.700 37.500 0.00 0.00 0.00 3.24
1752 1906 6.820656 ACTTCAGACAAACCTAATATGCAGAG 59.179 38.462 0.00 0.00 0.00 3.35
1753 1907 6.711277 ACTTCAGACAAACCTAATATGCAGA 58.289 36.000 0.00 0.00 0.00 4.26
1754 1908 6.595326 TGACTTCAGACAAACCTAATATGCAG 59.405 38.462 0.00 0.00 0.00 4.41
1755 1909 6.472016 TGACTTCAGACAAACCTAATATGCA 58.528 36.000 0.00 0.00 0.00 3.96
1756 1910 6.985188 TGACTTCAGACAAACCTAATATGC 57.015 37.500 0.00 0.00 0.00 3.14
1757 1911 9.388506 AGATTGACTTCAGACAAACCTAATATG 57.611 33.333 0.00 0.00 33.89 1.78
1758 1912 9.606631 GAGATTGACTTCAGACAAACCTAATAT 57.393 33.333 0.00 0.00 33.89 1.28
1759 1913 8.593679 TGAGATTGACTTCAGACAAACCTAATA 58.406 33.333 0.00 0.00 33.89 0.98
1760 1914 7.453393 TGAGATTGACTTCAGACAAACCTAAT 58.547 34.615 0.00 0.00 33.89 1.73
1761 1915 6.826668 TGAGATTGACTTCAGACAAACCTAA 58.173 36.000 0.00 0.00 33.89 2.69
1762 1916 6.419484 TGAGATTGACTTCAGACAAACCTA 57.581 37.500 0.00 0.00 33.89 3.08
1763 1917 5.296151 TGAGATTGACTTCAGACAAACCT 57.704 39.130 0.00 0.00 33.89 3.50
1764 1918 5.123027 GGATGAGATTGACTTCAGACAAACC 59.877 44.000 0.00 0.00 33.89 3.27
1765 1919 5.702670 TGGATGAGATTGACTTCAGACAAAC 59.297 40.000 0.00 0.00 33.89 2.93
1766 1920 5.868454 TGGATGAGATTGACTTCAGACAAA 58.132 37.500 0.00 0.00 33.89 2.83
1767 1921 5.488262 TGGATGAGATTGACTTCAGACAA 57.512 39.130 0.00 0.00 34.59 3.18
1768 1922 5.012458 AGTTGGATGAGATTGACTTCAGACA 59.988 40.000 0.00 0.00 0.00 3.41
1769 1923 5.486526 AGTTGGATGAGATTGACTTCAGAC 58.513 41.667 0.00 0.00 0.00 3.51
1770 1924 5.752036 AGTTGGATGAGATTGACTTCAGA 57.248 39.130 0.00 0.00 0.00 3.27
1771 1925 6.429078 TCAAAGTTGGATGAGATTGACTTCAG 59.571 38.462 0.00 0.00 0.00 3.02
1772 1926 6.205464 GTCAAAGTTGGATGAGATTGACTTCA 59.795 38.462 8.70 0.00 41.92 3.02
1773 1927 6.348868 GGTCAAAGTTGGATGAGATTGACTTC 60.349 42.308 13.97 0.00 43.66 3.01
1774 1928 5.474876 GGTCAAAGTTGGATGAGATTGACTT 59.525 40.000 13.97 0.00 43.66 3.01
1775 1929 5.006386 GGTCAAAGTTGGATGAGATTGACT 58.994 41.667 13.97 0.00 43.66 3.41
1776 1930 4.761739 TGGTCAAAGTTGGATGAGATTGAC 59.238 41.667 7.68 7.68 43.51 3.18
1777 1931 4.984295 TGGTCAAAGTTGGATGAGATTGA 58.016 39.130 0.00 0.00 0.00 2.57
1778 1932 5.706916 CTTGGTCAAAGTTGGATGAGATTG 58.293 41.667 0.00 0.00 0.00 2.67
1779 1933 5.972107 CTTGGTCAAAGTTGGATGAGATT 57.028 39.130 0.00 0.00 0.00 2.40
1832 1986 9.857656 AGATGAATCTAATGATATTGGTGTTGT 57.142 29.630 0.00 0.00 34.85 3.32
1834 1988 9.212641 CGAGATGAATCTAATGATATTGGTGTT 57.787 33.333 0.00 0.00 37.25 3.32
1835 1989 7.821359 CCGAGATGAATCTAATGATATTGGTGT 59.179 37.037 0.00 0.00 37.25 4.16
1836 1990 8.037166 TCCGAGATGAATCTAATGATATTGGTG 58.963 37.037 0.00 0.00 37.25 4.17
1837 1991 8.138928 TCCGAGATGAATCTAATGATATTGGT 57.861 34.615 0.00 0.00 37.25 3.67
1838 1992 9.610705 ATTCCGAGATGAATCTAATGATATTGG 57.389 33.333 0.00 0.00 37.25 3.16
1931 2085 6.476243 TGCCGAAAGTTAAACTTAGCTAAG 57.524 37.500 28.16 28.16 37.47 2.18
1932 2086 6.864360 TTGCCGAAAGTTAAACTTAGCTAA 57.136 33.333 5.94 5.94 37.47 3.09
1933 2087 6.864360 TTTGCCGAAAGTTAAACTTAGCTA 57.136 33.333 0.00 0.00 37.47 3.32
1934 2088 5.761165 TTTGCCGAAAGTTAAACTTAGCT 57.239 34.783 0.00 0.00 37.47 3.32
1935 2089 5.571741 GGATTTGCCGAAAGTTAAACTTAGC 59.428 40.000 0.00 0.00 37.47 3.09
1936 2090 6.674066 TGGATTTGCCGAAAGTTAAACTTAG 58.326 36.000 0.00 0.00 37.09 2.18
1937 2091 6.636562 TGGATTTGCCGAAAGTTAAACTTA 57.363 33.333 0.00 0.00 37.09 2.24
1938 2092 5.523438 TGGATTTGCCGAAAGTTAAACTT 57.477 34.783 0.00 0.00 38.90 2.66
1939 2093 5.523438 TTGGATTTGCCGAAAGTTAAACT 57.477 34.783 0.00 0.00 40.66 2.66
1940 2094 7.464045 GCATATTGGATTTGCCGAAAGTTAAAC 60.464 37.037 0.00 0.00 40.66 2.01
1941 2095 6.533367 GCATATTGGATTTGCCGAAAGTTAAA 59.467 34.615 0.00 0.00 40.66 1.52
1942 2096 6.039616 GCATATTGGATTTGCCGAAAGTTAA 58.960 36.000 0.00 0.00 40.66 2.01
1943 2097 5.126222 TGCATATTGGATTTGCCGAAAGTTA 59.874 36.000 1.85 0.00 40.66 2.24
1944 2098 4.081752 TGCATATTGGATTTGCCGAAAGTT 60.082 37.500 1.85 0.00 40.66 2.66
1945 2099 3.446873 TGCATATTGGATTTGCCGAAAGT 59.553 39.130 1.85 0.00 40.66 2.66
1946 2100 4.044336 TGCATATTGGATTTGCCGAAAG 57.956 40.909 1.85 0.00 40.66 2.62
1947 2101 3.698539 TCTGCATATTGGATTTGCCGAAA 59.301 39.130 0.00 0.00 40.66 3.46
1948 2102 3.286353 TCTGCATATTGGATTTGCCGAA 58.714 40.909 0.00 0.00 40.66 4.30
1949 2103 2.929641 TCTGCATATTGGATTTGCCGA 58.070 42.857 0.00 0.00 40.66 5.54
1950 2104 3.713858 TTCTGCATATTGGATTTGCCG 57.286 42.857 0.00 0.00 40.66 5.69
1951 2105 8.436046 TTTTTATTCTGCATATTGGATTTGCC 57.564 30.769 0.00 0.00 36.56 4.52
1952 2106 8.553696 CCTTTTTATTCTGCATATTGGATTTGC 58.446 33.333 0.00 0.00 37.67 3.68
1953 2107 9.820725 TCCTTTTTATTCTGCATATTGGATTTG 57.179 29.630 0.00 0.00 0.00 2.32
1954 2108 9.822185 GTCCTTTTTATTCTGCATATTGGATTT 57.178 29.630 0.00 0.00 0.00 2.17
1955 2109 8.424133 GGTCCTTTTTATTCTGCATATTGGATT 58.576 33.333 0.00 0.00 0.00 3.01
1956 2110 7.255590 CGGTCCTTTTTATTCTGCATATTGGAT 60.256 37.037 0.00 0.00 0.00 3.41
1957 2111 6.039270 CGGTCCTTTTTATTCTGCATATTGGA 59.961 38.462 0.00 0.00 0.00 3.53
1958 2112 6.208644 CGGTCCTTTTTATTCTGCATATTGG 58.791 40.000 0.00 0.00 0.00 3.16
1959 2113 6.039270 TCCGGTCCTTTTTATTCTGCATATTG 59.961 38.462 0.00 0.00 0.00 1.90
1960 2114 6.126409 TCCGGTCCTTTTTATTCTGCATATT 58.874 36.000 0.00 0.00 0.00 1.28
1961 2115 5.690865 TCCGGTCCTTTTTATTCTGCATAT 58.309 37.500 0.00 0.00 0.00 1.78
1962 2116 5.105567 TCCGGTCCTTTTTATTCTGCATA 57.894 39.130 0.00 0.00 0.00 3.14
1963 2117 3.947834 CTCCGGTCCTTTTTATTCTGCAT 59.052 43.478 0.00 0.00 0.00 3.96
1964 2118 3.343617 CTCCGGTCCTTTTTATTCTGCA 58.656 45.455 0.00 0.00 0.00 4.41
1965 2119 2.683362 CCTCCGGTCCTTTTTATTCTGC 59.317 50.000 0.00 0.00 0.00 4.26
1966 2120 3.054655 TCCCTCCGGTCCTTTTTATTCTG 60.055 47.826 0.00 0.00 0.00 3.02
1967 2121 3.187112 TCCCTCCGGTCCTTTTTATTCT 58.813 45.455 0.00 0.00 0.00 2.40
1968 2122 3.054582 ACTCCCTCCGGTCCTTTTTATTC 60.055 47.826 0.00 0.00 0.00 1.75
1969 2123 2.917600 ACTCCCTCCGGTCCTTTTTATT 59.082 45.455 0.00 0.00 0.00 1.40
1970 2124 2.558974 ACTCCCTCCGGTCCTTTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
1971 2125 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
1972 2126 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
1973 2127 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
1974 2128 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
1975 2129 0.324460 CTGTACTCCCTCCGGTCCTT 60.324 60.000 0.00 0.00 0.00 3.36
1976 2130 1.306970 CTGTACTCCCTCCGGTCCT 59.693 63.158 0.00 0.00 0.00 3.85
1977 2131 0.614134 AACTGTACTCCCTCCGGTCC 60.614 60.000 0.00 0.00 0.00 4.46
1978 2132 1.264295 AAACTGTACTCCCTCCGGTC 58.736 55.000 0.00 0.00 0.00 4.79
1979 2133 1.346722 CAAAACTGTACTCCCTCCGGT 59.653 52.381 0.00 0.00 0.00 5.28
1980 2134 1.621814 TCAAAACTGTACTCCCTCCGG 59.378 52.381 0.00 0.00 0.00 5.14
1981 2135 3.262420 CATCAAAACTGTACTCCCTCCG 58.738 50.000 0.00 0.00 0.00 4.63
1982 2136 4.287766 ACATCAAAACTGTACTCCCTCC 57.712 45.455 0.00 0.00 0.00 4.30
1983 2137 5.763204 TGAAACATCAAAACTGTACTCCCTC 59.237 40.000 0.00 0.00 0.00 4.30
1984 2138 5.690865 TGAAACATCAAAACTGTACTCCCT 58.309 37.500 0.00 0.00 0.00 4.20
1985 2139 6.385649 TTGAAACATCAAAACTGTACTCCC 57.614 37.500 0.00 0.00 0.00 4.30
1986 2140 7.254852 TGTTTGAAACATCAAAACTGTACTCC 58.745 34.615 6.66 0.00 40.70 3.85
1987 2141 8.682128 TTGTTTGAAACATCAAAACTGTACTC 57.318 30.769 11.97 0.00 41.79 2.59
1988 2142 8.921670 GTTTGTTTGAAACATCAAAACTGTACT 58.078 29.630 11.97 0.00 41.79 2.73
1989 2143 8.704234 TGTTTGTTTGAAACATCAAAACTGTAC 58.296 29.630 11.97 0.00 41.79 2.90
1990 2144 8.818141 TGTTTGTTTGAAACATCAAAACTGTA 57.182 26.923 11.97 0.00 41.79 2.74
1991 2145 7.721286 TGTTTGTTTGAAACATCAAAACTGT 57.279 28.000 11.97 0.00 41.79 3.55
1992 2146 9.443283 TTTTGTTTGTTTGAAACATCAAAACTG 57.557 25.926 28.73 0.00 42.81 3.16
2055 2211 0.816825 CCATGCTCAGGGTTCATCCG 60.817 60.000 0.00 0.00 37.00 4.18
2075 2231 3.320826 TGTACTGTGAGTGCTCTGCTAAA 59.679 43.478 0.00 0.00 31.77 1.85
2153 2309 2.015587 GCTCAGAAAAGCCAGGATCTG 58.984 52.381 0.00 0.00 40.46 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.