Multiple sequence alignment - TraesCS4A01G259700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G259700 chr4A 100.000 3938 0 0 1 3938 572552882 572548945 0.000000e+00 7273
1 TraesCS4A01G259700 chr4A 85.077 583 76 4 2615 3190 572542046 572541468 5.670000e-163 584
2 TraesCS4A01G259700 chr4A 80.591 778 103 31 1778 2533 572542922 572542171 1.240000e-154 556
3 TraesCS4A01G259700 chr4B 90.374 2431 166 31 1237 3620 43751064 43753473 0.000000e+00 3131
4 TraesCS4A01G259700 chr4B 86.523 512 60 3 2612 3116 43758726 43759235 4.450000e-154 555
5 TraesCS4A01G259700 chr4B 79.922 767 114 28 1778 2533 43766725 43767462 9.690000e-146 527
6 TraesCS4A01G259700 chr4B 88.835 412 32 7 292 698 43750054 43750456 9.830000e-136 494
7 TraesCS4A01G259700 chr4B 86.000 450 41 17 735 1176 43750457 43750892 2.770000e-126 462
8 TraesCS4A01G259700 chr4B 84.656 378 58 0 2624 3001 43767684 43768061 1.030000e-100 377
9 TraesCS4A01G259700 chr4B 79.567 416 61 16 1798 2211 43757855 43758248 3.880000e-70 276
10 TraesCS4A01G259700 chr4B 90.000 200 17 3 92 289 43749818 43750016 5.050000e-64 255
11 TraesCS4A01G259700 chr4B 94.737 95 4 1 1 95 43749696 43749789 3.170000e-31 147
12 TraesCS4A01G259700 chr4D 94.711 1645 69 9 1350 2978 30420862 30422504 0.000000e+00 2540
13 TraesCS4A01G259700 chr4D 87.562 1214 78 35 1 1176 30419297 30420475 0.000000e+00 1338
14 TraesCS4A01G259700 chr4D 84.568 1147 144 24 1958 3084 30413050 30414183 0.000000e+00 1107
15 TraesCS4A01G259700 chr4D 81.070 766 106 25 1778 2533 30503474 30504210 3.410000e-160 575
16 TraesCS4A01G259700 chr4D 80.000 720 109 22 1822 2533 30509439 30510131 2.110000e-137 499
17 TraesCS4A01G259700 chr4D 92.941 340 19 3 3062 3396 30422530 30422869 1.270000e-134 490
18 TraesCS4A01G259700 chr4D 84.375 512 65 9 2612 3116 30504317 30504820 4.570000e-134 488
19 TraesCS4A01G259700 chr4D 84.759 374 57 0 2612 2985 30510234 30510607 3.720000e-100 375
20 TraesCS4A01G259700 chr4D 93.805 226 12 2 3395 3619 30425070 30425294 4.870000e-89 339
21 TraesCS4A01G259700 chr4D 95.429 175 8 0 1177 1351 30420616 30420790 3.000000e-71 279
22 TraesCS4A01G259700 chr7B 80.408 735 109 25 1778 2504 104260599 104259892 9.690000e-146 527
23 TraesCS4A01G259700 chr7B 83.166 499 71 7 2615 3106 104259085 104258593 1.000000e-120 444


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G259700 chr4A 572548945 572552882 3937 True 7273.0 7273 100.0000 1 3938 1 chr4A.!!$R1 3937
1 TraesCS4A01G259700 chr4A 572541468 572542922 1454 True 570.0 584 82.8340 1778 3190 2 chr4A.!!$R2 1412
2 TraesCS4A01G259700 chr4B 43749696 43753473 3777 False 897.8 3131 89.9892 1 3620 5 chr4B.!!$F1 3619
3 TraesCS4A01G259700 chr4B 43766725 43768061 1336 False 452.0 527 82.2890 1778 3001 2 chr4B.!!$F3 1223
4 TraesCS4A01G259700 chr4B 43757855 43759235 1380 False 415.5 555 83.0450 1798 3116 2 chr4B.!!$F2 1318
5 TraesCS4A01G259700 chr4D 30413050 30414183 1133 False 1107.0 1107 84.5680 1958 3084 1 chr4D.!!$F1 1126
6 TraesCS4A01G259700 chr4D 30419297 30425294 5997 False 997.2 2540 92.8896 1 3619 5 chr4D.!!$F2 3618
7 TraesCS4A01G259700 chr4D 30503474 30504820 1346 False 531.5 575 82.7225 1778 3116 2 chr4D.!!$F3 1338
8 TraesCS4A01G259700 chr4D 30509439 30510607 1168 False 437.0 499 82.3795 1822 2985 2 chr4D.!!$F4 1163
9 TraesCS4A01G259700 chr7B 104258593 104260599 2006 True 485.5 527 81.7870 1778 3106 2 chr7B.!!$R1 1328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 559 0.321387 TCTGCGACGGAGACAGTAGT 60.321 55.0 15.63 0.0 33.12 2.73 F
1649 1966 1.390565 CCCTTCCGTATCGAGACTGT 58.609 55.0 8.77 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 2224 0.466739 TGCGGGCTTCGAGATACCTA 60.467 55.0 4.34 0.0 42.43 3.08 R
3633 7070 1.115467 AATAGCTCTCACCGACCTGG 58.885 55.0 0.00 0.0 46.41 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 133 5.052481 CCGCCCTAACAATTAACTAGTACC 58.948 45.833 0.00 0.00 0.00 3.34
122 156 1.411651 AAAGGCCGCCCCTCTATCTC 61.412 60.000 5.55 0.00 45.62 2.75
234 268 2.051345 CGCACGTTTTCCTGCCAC 60.051 61.111 0.00 0.00 0.00 5.01
282 318 3.112205 ATCTGATCTGGTGCCGGCC 62.112 63.158 26.77 15.53 0.00 6.13
364 435 2.624364 TGTCGTTGCCTGTTGTAGTCTA 59.376 45.455 0.00 0.00 0.00 2.59
389 460 1.979469 GACAGTTGATCACGACGTGAG 59.021 52.381 31.72 20.63 46.04 3.51
403 474 2.666994 GACGTGAGCTTTGTAGGCTTAC 59.333 50.000 0.00 0.00 41.06 2.34
471 542 4.706962 GGAAGATGCACCCATACTTTTTCT 59.293 41.667 0.00 0.00 0.00 2.52
477 548 2.073816 ACCCATACTTTTTCTGCGACG 58.926 47.619 0.00 0.00 0.00 5.12
488 559 0.321387 TCTGCGACGGAGACAGTAGT 60.321 55.000 15.63 0.00 33.12 2.73
497 568 3.440872 ACGGAGACAGTAGTTAGAGCAAG 59.559 47.826 0.00 0.00 0.00 4.01
547 623 3.129287 GTCCAAATGCTTGTGGTCTATGG 59.871 47.826 8.59 0.00 36.23 2.74
554 630 4.406456 TGCTTGTGGTCTATGGTTCATTT 58.594 39.130 0.00 0.00 0.00 2.32
562 638 8.038944 TGTGGTCTATGGTTCATTTAGACTTAC 58.961 37.037 8.68 8.72 40.94 2.34
593 669 8.383374 TGGTAAGACCTTATAGTGTGGTAATT 57.617 34.615 0.00 0.00 39.58 1.40
618 694 2.804212 GCATTGGCACACAAAAGAGCTT 60.804 45.455 0.00 0.00 43.46 3.74
626 702 4.853743 GCACACAAAAGAGCTTACTTATGC 59.146 41.667 0.00 0.00 0.00 3.14
640 716 7.493971 AGCTTACTTATGCTGTTCATTCTACAG 59.506 37.037 0.00 0.00 44.55 2.74
704 780 3.731652 TGGTCATTTTTGTCCAGCTTG 57.268 42.857 0.00 0.00 0.00 4.01
705 781 3.295093 TGGTCATTTTTGTCCAGCTTGA 58.705 40.909 0.00 0.00 0.00 3.02
707 783 4.161189 TGGTCATTTTTGTCCAGCTTGAAA 59.839 37.500 0.00 0.00 0.00 2.69
708 784 4.507756 GGTCATTTTTGTCCAGCTTGAAAC 59.492 41.667 0.00 0.00 0.00 2.78
709 785 5.108517 GTCATTTTTGTCCAGCTTGAAACA 58.891 37.500 0.00 0.00 0.00 2.83
714 790 4.508461 TTGTCCAGCTTGAAACATCATG 57.492 40.909 0.00 0.00 0.00 3.07
715 791 2.821378 TGTCCAGCTTGAAACATCATGG 59.179 45.455 0.00 0.00 0.00 3.66
716 792 2.821969 GTCCAGCTTGAAACATCATGGT 59.178 45.455 0.00 0.00 0.00 3.55
717 793 3.084039 TCCAGCTTGAAACATCATGGTC 58.916 45.455 0.00 0.00 0.00 4.02
718 794 3.087031 CCAGCTTGAAACATCATGGTCT 58.913 45.455 0.00 0.00 0.00 3.85
719 795 3.508793 CCAGCTTGAAACATCATGGTCTT 59.491 43.478 0.00 0.00 0.00 3.01
720 796 4.021719 CCAGCTTGAAACATCATGGTCTTT 60.022 41.667 0.00 0.00 0.00 2.52
721 797 5.510179 CCAGCTTGAAACATCATGGTCTTTT 60.510 40.000 0.00 0.00 0.00 2.27
722 798 5.987347 CAGCTTGAAACATCATGGTCTTTTT 59.013 36.000 0.00 0.00 0.00 1.94
820 897 9.978044 TCAATAATCTCACTACATGATCTCTTG 57.022 33.333 0.00 0.00 36.48 3.02
821 898 9.978044 CAATAATCTCACTACATGATCTCTTGA 57.022 33.333 0.00 0.00 36.48 3.02
824 901 6.691754 TCTCACTACATGATCTCTTGACTC 57.308 41.667 0.00 0.00 36.48 3.36
825 902 6.183347 TCTCACTACATGATCTCTTGACTCA 58.817 40.000 0.00 0.00 36.48 3.41
826 903 6.832900 TCTCACTACATGATCTCTTGACTCAT 59.167 38.462 0.00 0.00 36.48 2.90
848 925 3.318839 TGCCAACTTGGTCAGATTTGAAG 59.681 43.478 9.63 0.00 40.46 3.02
869 946 5.248380 AGCCACTTCCTCTCAAAAGTAAT 57.752 39.130 0.00 0.00 34.05 1.89
881 958 8.383619 CCTCTCAAAAGTAATGACGAACTTATG 58.616 37.037 0.00 0.00 34.91 1.90
885 962 9.658475 TCAAAAGTAATGACGAACTTATGTTTG 57.342 29.630 7.10 7.10 41.97 2.93
966 1043 7.851822 ATGTTAATTTGTCGTCATTTCACAC 57.148 32.000 0.00 0.00 0.00 3.82
978 1055 5.448496 CGTCATTTCACACTTGAAGGTTGAA 60.448 40.000 6.64 6.64 42.79 2.69
1018 1095 3.120321 ACATGTTTCGTAGGAAGCACA 57.880 42.857 15.53 10.28 44.53 4.57
1091 1168 9.143155 ACTAATTGAAAGTCAGGTTTTGGTTAT 57.857 29.630 0.00 0.00 0.00 1.89
1175 1399 7.315890 GTGGATTCATTAGTTTCTTTCCAAGG 58.684 38.462 0.00 0.00 34.06 3.61
1199 1423 8.689972 AGGTTTTTATCAAGCTTCCATCTTATG 58.310 33.333 0.00 0.00 30.03 1.90
1253 1477 8.610035 CCGGAAAGGATATCTAAACAAGTTAAC 58.390 37.037 0.00 0.00 45.00 2.01
1326 1550 8.522830 TCTGGCTTAATAAATGAAGAACAAAGG 58.477 33.333 0.00 0.00 0.00 3.11
1488 1790 7.416154 TTTTTGTGGTAGTTCAGATCTTACG 57.584 36.000 0.00 0.00 0.00 3.18
1546 1848 5.296035 AGCCCGTAATGTAGCATTTTTACTC 59.704 40.000 0.00 0.00 0.00 2.59
1611 1919 8.375465 GCTTCTTTTGATACAAATGTATGTTGC 58.625 33.333 10.64 0.00 40.99 4.17
1619 1927 8.522003 TGATACAAATGTATGTTGCAACTGATT 58.478 29.630 28.61 17.36 40.99 2.57
1645 1962 1.831286 GCCCCCTTCCGTATCGAGA 60.831 63.158 0.00 0.00 0.00 4.04
1649 1966 1.390565 CCCTTCCGTATCGAGACTGT 58.609 55.000 8.77 0.00 0.00 3.55
1690 2007 5.003804 TCCTTTAGATGTTTCCAGTTCAGC 58.996 41.667 0.00 0.00 0.00 4.26
1815 2141 7.031975 GTCCATTTCTCATGAAACAATCTTCC 58.968 38.462 0.00 0.00 43.90 3.46
1854 2180 3.060615 GAGCTGCACTTGGGCCTG 61.061 66.667 4.53 0.00 0.00 4.85
1898 2224 1.874345 GCAGTGAAGCATGCTTGGCT 61.874 55.000 36.48 27.55 45.15 4.75
2025 2357 6.986231 GGTAAATATGCATTTTCCTTCCTTGG 59.014 38.462 3.54 0.00 38.13 3.61
2043 2379 4.219070 CCTTGGAATGCTCAAGTGATTTCA 59.781 41.667 0.00 0.00 39.78 2.69
2078 2416 4.518970 TGACCAAGTAACCAAGCATTCTTC 59.481 41.667 0.00 0.00 0.00 2.87
2211 2553 1.691196 TGCAAAGCAGGTAAGCACTT 58.309 45.000 0.00 0.00 36.85 3.16
2246 2634 2.852449 GCCTATGGCTTCCTTAACCTC 58.148 52.381 0.73 0.00 46.69 3.85
2259 2647 3.334691 CTTAACCTCGAATTCACCTGCA 58.665 45.455 6.22 0.00 0.00 4.41
2307 2706 0.179062 ATCGTCTCATGAAGGGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
2309 2708 0.392193 CGTCTCATGAAGGGCAGCTT 60.392 55.000 0.00 0.00 0.00 3.74
2402 2801 3.381590 TGATAGACTTCACAGGATGGACG 59.618 47.826 0.00 0.00 43.62 4.79
2545 3604 1.367840 AGGTGTCGCCTCTGAACAC 59.632 57.895 0.00 2.48 46.96 3.32
2694 3903 6.773976 TCAATCCAGAAAGTCAACTTTGTT 57.226 33.333 12.62 0.00 45.37 2.83
2724 3933 4.566987 ACAACGAGGAAAGTATGAAGACC 58.433 43.478 0.00 0.00 0.00 3.85
2831 4040 5.695851 AAGTTGATGACAAAGGATGACAC 57.304 39.130 0.00 0.00 36.55 3.67
2916 4126 1.872234 CATACCGCAGTCGTCACCG 60.872 63.158 0.00 0.00 0.00 4.94
3160 4386 4.503910 TCTCACAACAGTTCCATATTCCG 58.496 43.478 0.00 0.00 0.00 4.30
3169 4395 2.693074 GTTCCATATTCCGTTGGCCAAT 59.307 45.455 23.66 7.71 32.80 3.16
3278 4504 7.088905 CAGCTGCCATTTCAGGAATATTAATC 58.911 38.462 0.00 0.00 34.74 1.75
3279 4505 6.072286 AGCTGCCATTTCAGGAATATTAATCG 60.072 38.462 0.00 0.00 34.74 3.34
3306 4537 5.959583 TGTTTTTACCATTTCCCCAAGTT 57.040 34.783 0.00 0.00 0.00 2.66
3319 4550 9.449719 CATTTCCCCAAGTTACTCCATATATAC 57.550 37.037 0.00 0.00 0.00 1.47
3322 4553 6.030082 CCCCAAGTTACTCCATATATACCCT 58.970 44.000 0.00 0.00 0.00 4.34
3387 4622 7.288810 AGAGAAACCTCATGTCTATGATCTC 57.711 40.000 9.15 9.15 41.60 2.75
3631 7068 8.851960 TGTTTATCTAGTCGTTGATGATGTAC 57.148 34.615 0.00 0.00 0.00 2.90
3632 7069 8.463607 TGTTTATCTAGTCGTTGATGATGTACA 58.536 33.333 0.00 0.00 0.00 2.90
3633 7070 8.744011 GTTTATCTAGTCGTTGATGATGTACAC 58.256 37.037 0.00 0.00 0.00 2.90
3634 7071 5.244785 TCTAGTCGTTGATGATGTACACC 57.755 43.478 0.00 0.00 0.00 4.16
3635 7072 3.953712 AGTCGTTGATGATGTACACCA 57.046 42.857 0.00 0.00 0.00 4.17
3636 7073 3.849911 AGTCGTTGATGATGTACACCAG 58.150 45.455 0.00 0.00 0.00 4.00
3637 7074 2.930040 GTCGTTGATGATGTACACCAGG 59.070 50.000 0.00 0.00 0.00 4.45
3638 7075 2.565391 TCGTTGATGATGTACACCAGGT 59.435 45.455 0.00 0.00 0.00 4.00
3639 7076 2.930040 CGTTGATGATGTACACCAGGTC 59.070 50.000 0.00 0.00 0.00 3.85
3640 7077 2.930040 GTTGATGATGTACACCAGGTCG 59.070 50.000 0.00 0.00 0.00 4.79
3641 7078 1.480545 TGATGATGTACACCAGGTCGG 59.519 52.381 0.00 0.00 42.50 4.79
3657 7094 3.114065 GGTCGGTGAGAGCTATTTTACG 58.886 50.000 0.00 0.00 43.62 3.18
3658 7095 3.181493 GGTCGGTGAGAGCTATTTTACGA 60.181 47.826 0.00 0.00 43.62 3.43
3659 7096 3.790288 GTCGGTGAGAGCTATTTTACGAC 59.210 47.826 11.65 11.65 40.76 4.34
3660 7097 3.114065 CGGTGAGAGCTATTTTACGACC 58.886 50.000 0.00 0.00 0.00 4.79
3661 7098 3.114065 GGTGAGAGCTATTTTACGACCG 58.886 50.000 0.00 0.00 0.00 4.79
3662 7099 3.181493 GGTGAGAGCTATTTTACGACCGA 60.181 47.826 0.00 0.00 0.00 4.69
3663 7100 4.036352 GTGAGAGCTATTTTACGACCGAG 58.964 47.826 0.00 0.00 0.00 4.63
3664 7101 3.693085 TGAGAGCTATTTTACGACCGAGT 59.307 43.478 0.00 0.00 0.00 4.18
3665 7102 4.157289 TGAGAGCTATTTTACGACCGAGTT 59.843 41.667 0.00 0.00 0.00 3.01
3666 7103 4.670347 AGAGCTATTTTACGACCGAGTTC 58.330 43.478 0.00 0.00 0.00 3.01
3667 7104 4.157289 AGAGCTATTTTACGACCGAGTTCA 59.843 41.667 0.00 0.00 0.00 3.18
3668 7105 4.171754 AGCTATTTTACGACCGAGTTCAC 58.828 43.478 0.00 0.00 0.00 3.18
3669 7106 3.001365 GCTATTTTACGACCGAGTTCACG 60.001 47.826 0.00 0.00 0.00 4.35
3681 7118 3.834610 CGAGTTCACGGAACAATAGAGT 58.165 45.455 15.94 0.00 44.11 3.24
3682 7119 4.235360 CGAGTTCACGGAACAATAGAGTT 58.765 43.478 15.94 0.00 44.11 3.01
3683 7120 5.396484 CGAGTTCACGGAACAATAGAGTTA 58.604 41.667 15.94 0.00 44.11 2.24
3684 7121 5.512082 CGAGTTCACGGAACAATAGAGTTAG 59.488 44.000 15.94 0.00 44.11 2.34
3685 7122 6.585695 AGTTCACGGAACAATAGAGTTAGA 57.414 37.500 15.94 0.00 44.11 2.10
3686 7123 6.388278 AGTTCACGGAACAATAGAGTTAGAC 58.612 40.000 15.94 0.00 44.11 2.59
3687 7124 5.970317 TCACGGAACAATAGAGTTAGACA 57.030 39.130 0.00 0.00 0.00 3.41
3688 7125 6.335471 TCACGGAACAATAGAGTTAGACAA 57.665 37.500 0.00 0.00 0.00 3.18
3689 7126 6.154445 TCACGGAACAATAGAGTTAGACAAC 58.846 40.000 0.00 0.00 34.67 3.32
3690 7127 5.347907 CACGGAACAATAGAGTTAGACAACC 59.652 44.000 0.00 0.00 35.05 3.77
3691 7128 4.561606 CGGAACAATAGAGTTAGACAACCG 59.438 45.833 0.00 0.00 35.05 4.44
3692 7129 4.868734 GGAACAATAGAGTTAGACAACCGG 59.131 45.833 0.00 0.00 35.05 5.28
3693 7130 5.476614 GAACAATAGAGTTAGACAACCGGT 58.523 41.667 0.00 0.00 35.05 5.28
3704 7141 2.076863 GACAACCGGTCTTTCAGATGG 58.923 52.381 8.04 0.00 43.46 3.51
3705 7142 1.697432 ACAACCGGTCTTTCAGATGGA 59.303 47.619 8.04 0.00 0.00 3.41
3706 7143 2.289694 ACAACCGGTCTTTCAGATGGAG 60.290 50.000 8.04 0.00 0.00 3.86
3707 7144 1.645710 ACCGGTCTTTCAGATGGAGT 58.354 50.000 0.00 0.00 0.00 3.85
3708 7145 1.276421 ACCGGTCTTTCAGATGGAGTG 59.724 52.381 0.00 0.00 0.00 3.51
3709 7146 1.276421 CCGGTCTTTCAGATGGAGTGT 59.724 52.381 0.00 0.00 0.00 3.55
3710 7147 2.496070 CCGGTCTTTCAGATGGAGTGTA 59.504 50.000 0.00 0.00 0.00 2.90
3711 7148 3.056107 CCGGTCTTTCAGATGGAGTGTAA 60.056 47.826 0.00 0.00 0.00 2.41
3712 7149 4.383118 CCGGTCTTTCAGATGGAGTGTAAT 60.383 45.833 0.00 0.00 0.00 1.89
3713 7150 5.163447 CCGGTCTTTCAGATGGAGTGTAATA 60.163 44.000 0.00 0.00 0.00 0.98
3714 7151 6.338146 CGGTCTTTCAGATGGAGTGTAATAA 58.662 40.000 0.00 0.00 0.00 1.40
3715 7152 6.477033 CGGTCTTTCAGATGGAGTGTAATAAG 59.523 42.308 0.00 0.00 0.00 1.73
3716 7153 6.763610 GGTCTTTCAGATGGAGTGTAATAAGG 59.236 42.308 0.00 0.00 0.00 2.69
3717 7154 6.258947 GTCTTTCAGATGGAGTGTAATAAGGC 59.741 42.308 0.00 0.00 0.00 4.35
3718 7155 4.322080 TCAGATGGAGTGTAATAAGGCG 57.678 45.455 0.00 0.00 0.00 5.52
3719 7156 3.704566 TCAGATGGAGTGTAATAAGGCGT 59.295 43.478 0.00 0.00 0.00 5.68
3720 7157 4.891168 TCAGATGGAGTGTAATAAGGCGTA 59.109 41.667 0.00 0.00 0.00 4.42
3721 7158 5.361571 TCAGATGGAGTGTAATAAGGCGTAA 59.638 40.000 0.00 0.00 0.00 3.18
3722 7159 6.041637 TCAGATGGAGTGTAATAAGGCGTAAT 59.958 38.462 0.00 0.00 0.00 1.89
3723 7160 7.231925 TCAGATGGAGTGTAATAAGGCGTAATA 59.768 37.037 0.00 0.00 0.00 0.98
3724 7161 7.870954 CAGATGGAGTGTAATAAGGCGTAATAA 59.129 37.037 0.00 0.00 0.00 1.40
3725 7162 8.088981 AGATGGAGTGTAATAAGGCGTAATAAG 58.911 37.037 0.00 0.00 0.00 1.73
3726 7163 6.518493 TGGAGTGTAATAAGGCGTAATAAGG 58.482 40.000 0.00 0.00 0.00 2.69
3727 7164 5.407691 GGAGTGTAATAAGGCGTAATAAGGC 59.592 44.000 0.00 0.00 35.74 4.35
3728 7165 4.986659 AGTGTAATAAGGCGTAATAAGGCG 59.013 41.667 0.00 0.00 37.37 5.52
3729 7166 4.151157 GTGTAATAAGGCGTAATAAGGCGG 59.849 45.833 0.00 0.00 37.37 6.13
3733 7170 3.330275 GCGTAATAAGGCGGCAGG 58.670 61.111 13.08 0.00 0.00 4.85
3734 7171 2.251642 GCGTAATAAGGCGGCAGGG 61.252 63.158 13.08 0.00 0.00 4.45
3735 7172 2.251642 CGTAATAAGGCGGCAGGGC 61.252 63.158 13.08 0.00 42.69 5.19
3746 7183 4.740822 GCAGGGCCGGATGGTTGT 62.741 66.667 5.05 0.00 37.67 3.32
3747 7184 2.438434 CAGGGCCGGATGGTTGTC 60.438 66.667 5.05 0.00 37.67 3.18
3748 7185 3.728373 AGGGCCGGATGGTTGTCC 61.728 66.667 5.05 0.00 37.67 4.02
3749 7186 3.728373 GGGCCGGATGGTTGTCCT 61.728 66.667 5.05 0.00 36.07 3.85
3750 7187 2.372074 GGGCCGGATGGTTGTCCTA 61.372 63.158 5.05 0.00 36.07 2.94
3751 7188 1.705997 GGGCCGGATGGTTGTCCTAT 61.706 60.000 5.05 0.00 36.07 2.57
3752 7189 0.535102 GGCCGGATGGTTGTCCTATG 60.535 60.000 5.05 0.00 36.07 2.23
3753 7190 0.535102 GCCGGATGGTTGTCCTATGG 60.535 60.000 5.05 0.00 36.07 2.74
3754 7191 1.128200 CCGGATGGTTGTCCTATGGA 58.872 55.000 0.00 0.00 36.07 3.41
3755 7192 1.070758 CCGGATGGTTGTCCTATGGAG 59.929 57.143 0.00 0.00 36.07 3.86
3756 7193 1.762957 CGGATGGTTGTCCTATGGAGT 59.237 52.381 0.00 0.00 36.07 3.85
3757 7194 2.170607 CGGATGGTTGTCCTATGGAGTT 59.829 50.000 0.00 0.00 36.07 3.01
3758 7195 3.370527 CGGATGGTTGTCCTATGGAGTTT 60.371 47.826 0.00 0.00 36.07 2.66
3759 7196 4.600062 GGATGGTTGTCCTATGGAGTTTT 58.400 43.478 0.00 0.00 35.32 2.43
3760 7197 5.628200 CGGATGGTTGTCCTATGGAGTTTTA 60.628 44.000 0.00 0.00 36.07 1.52
3761 7198 5.823045 GGATGGTTGTCCTATGGAGTTTTAG 59.177 44.000 0.00 0.00 35.32 1.85
3762 7199 5.836024 TGGTTGTCCTATGGAGTTTTAGT 57.164 39.130 0.00 0.00 29.39 2.24
3763 7200 5.556915 TGGTTGTCCTATGGAGTTTTAGTG 58.443 41.667 0.00 0.00 29.39 2.74
3764 7201 4.941873 GGTTGTCCTATGGAGTTTTAGTGG 59.058 45.833 0.00 0.00 29.39 4.00
3765 7202 5.514310 GGTTGTCCTATGGAGTTTTAGTGGT 60.514 44.000 0.00 0.00 29.39 4.16
3766 7203 5.416271 TGTCCTATGGAGTTTTAGTGGTC 57.584 43.478 0.00 0.00 29.39 4.02
3767 7204 4.224370 TGTCCTATGGAGTTTTAGTGGTCC 59.776 45.833 0.00 0.00 29.39 4.46
3768 7205 4.470304 GTCCTATGGAGTTTTAGTGGTCCT 59.530 45.833 0.00 0.00 29.39 3.85
3769 7206 5.045797 GTCCTATGGAGTTTTAGTGGTCCTT 60.046 44.000 0.00 0.00 29.39 3.36
3770 7207 5.550403 TCCTATGGAGTTTTAGTGGTCCTTT 59.450 40.000 0.00 0.00 0.00 3.11
3771 7208 6.045106 TCCTATGGAGTTTTAGTGGTCCTTTT 59.955 38.462 0.00 0.00 0.00 2.27
3772 7209 6.151144 CCTATGGAGTTTTAGTGGTCCTTTTG 59.849 42.308 0.00 0.00 0.00 2.44
3773 7210 4.211920 TGGAGTTTTAGTGGTCCTTTTGG 58.788 43.478 0.00 0.00 42.21 3.28
3788 7225 4.886579 CCTTTTGGAAAGGTGATTGAAGG 58.113 43.478 10.58 0.00 44.07 3.46
3789 7226 4.344968 CCTTTTGGAAAGGTGATTGAAGGT 59.655 41.667 10.58 0.00 44.07 3.50
3790 7227 4.935352 TTTGGAAAGGTGATTGAAGGTG 57.065 40.909 0.00 0.00 0.00 4.00
3791 7228 3.874383 TGGAAAGGTGATTGAAGGTGA 57.126 42.857 0.00 0.00 0.00 4.02
3792 7229 3.486383 TGGAAAGGTGATTGAAGGTGAC 58.514 45.455 0.00 0.00 0.00 3.67
3793 7230 2.820197 GGAAAGGTGATTGAAGGTGACC 59.180 50.000 0.00 0.00 0.00 4.02
3794 7231 3.498661 GGAAAGGTGATTGAAGGTGACCT 60.499 47.826 0.00 0.00 38.75 3.85
3796 7233 4.993705 AAGGTGATTGAAGGTGACCTTA 57.006 40.909 18.28 2.57 44.82 2.69
3797 7234 4.559862 AGGTGATTGAAGGTGACCTTAG 57.440 45.455 18.28 0.00 44.82 2.18
3798 7235 3.910627 AGGTGATTGAAGGTGACCTTAGT 59.089 43.478 18.28 6.09 44.82 2.24
3799 7236 4.003648 GGTGATTGAAGGTGACCTTAGTG 58.996 47.826 18.28 0.00 44.82 2.74
3800 7237 3.437049 GTGATTGAAGGTGACCTTAGTGC 59.563 47.826 18.28 5.30 44.82 4.40
3801 7238 3.072330 TGATTGAAGGTGACCTTAGTGCA 59.928 43.478 18.28 8.16 44.82 4.57
3802 7239 2.543777 TGAAGGTGACCTTAGTGCAC 57.456 50.000 18.28 9.40 44.82 4.57
3803 7240 1.765904 TGAAGGTGACCTTAGTGCACA 59.234 47.619 18.28 6.98 44.82 4.57
3804 7241 2.371841 TGAAGGTGACCTTAGTGCACAT 59.628 45.455 18.28 6.83 44.82 3.21
3805 7242 3.181445 TGAAGGTGACCTTAGTGCACATT 60.181 43.478 18.28 0.92 44.82 2.71
3806 7243 3.508845 AGGTGACCTTAGTGCACATTT 57.491 42.857 21.04 0.05 34.33 2.32
3807 7244 3.832527 AGGTGACCTTAGTGCACATTTT 58.167 40.909 21.04 0.00 34.33 1.82
3808 7245 3.569701 AGGTGACCTTAGTGCACATTTTG 59.430 43.478 21.04 5.75 34.33 2.44
3809 7246 7.460769 AAGGTGACCTTAGTGCACATTTTGC 62.461 44.000 16.64 4.73 46.49 3.68
3819 7256 3.438373 GCACATTTTGCGGATTTTCAC 57.562 42.857 0.00 0.00 42.79 3.18
3820 7257 2.799412 GCACATTTTGCGGATTTTCACA 59.201 40.909 0.00 0.00 42.79 3.58
3821 7258 3.247173 GCACATTTTGCGGATTTTCACAA 59.753 39.130 0.00 0.00 42.79 3.33
3822 7259 4.608890 GCACATTTTGCGGATTTTCACAAG 60.609 41.667 0.00 0.00 42.79 3.16
3823 7260 4.744137 CACATTTTGCGGATTTTCACAAGA 59.256 37.500 0.00 0.00 0.00 3.02
3824 7261 4.744631 ACATTTTGCGGATTTTCACAAGAC 59.255 37.500 0.00 0.00 0.00 3.01
3825 7262 4.647424 TTTTGCGGATTTTCACAAGACT 57.353 36.364 0.00 0.00 0.00 3.24
3826 7263 3.624326 TTGCGGATTTTCACAAGACTG 57.376 42.857 0.00 0.00 0.00 3.51
3827 7264 2.571212 TGCGGATTTTCACAAGACTGT 58.429 42.857 0.00 0.00 35.63 3.55
3839 7276 4.985413 CACAAGACTGTGCTTTCTTTTCA 58.015 39.130 0.00 0.00 46.19 2.69
3840 7277 4.795278 CACAAGACTGTGCTTTCTTTTCAC 59.205 41.667 0.00 0.00 46.19 3.18
3841 7278 4.458989 ACAAGACTGTGCTTTCTTTTCACA 59.541 37.500 0.00 0.00 38.27 3.58
3842 7279 5.048083 ACAAGACTGTGCTTTCTTTTCACAA 60.048 36.000 0.00 0.00 39.82 3.33
3843 7280 4.986622 AGACTGTGCTTTCTTTTCACAAC 58.013 39.130 0.00 0.00 39.82 3.32
3844 7281 4.702131 AGACTGTGCTTTCTTTTCACAACT 59.298 37.500 0.00 0.00 39.82 3.16
3845 7282 5.183904 AGACTGTGCTTTCTTTTCACAACTT 59.816 36.000 0.00 0.00 39.82 2.66
3846 7283 5.163513 ACTGTGCTTTCTTTTCACAACTTG 58.836 37.500 0.00 0.00 39.82 3.16
3847 7284 4.493547 TGTGCTTTCTTTTCACAACTTGG 58.506 39.130 0.00 0.00 37.73 3.61
3848 7285 4.219507 TGTGCTTTCTTTTCACAACTTGGA 59.780 37.500 0.00 0.00 37.73 3.53
3849 7286 5.105392 TGTGCTTTCTTTTCACAACTTGGAT 60.105 36.000 0.00 0.00 37.73 3.41
3850 7287 5.812127 GTGCTTTCTTTTCACAACTTGGATT 59.188 36.000 0.00 0.00 0.00 3.01
3851 7288 6.313658 GTGCTTTCTTTTCACAACTTGGATTT 59.686 34.615 0.00 0.00 0.00 2.17
3852 7289 6.878389 TGCTTTCTTTTCACAACTTGGATTTT 59.122 30.769 0.00 0.00 0.00 1.82
3853 7290 7.148440 TGCTTTCTTTTCACAACTTGGATTTTG 60.148 33.333 0.00 0.00 0.00 2.44
3854 7291 7.608308 TTTCTTTTCACAACTTGGATTTTGG 57.392 32.000 0.00 0.00 0.00 3.28
3855 7292 5.669477 TCTTTTCACAACTTGGATTTTGGG 58.331 37.500 0.00 0.00 0.00 4.12
3856 7293 5.188751 TCTTTTCACAACTTGGATTTTGGGT 59.811 36.000 0.00 0.00 0.00 4.51
3857 7294 5.428184 TTTCACAACTTGGATTTTGGGTT 57.572 34.783 0.00 0.00 0.00 4.11
3858 7295 5.428184 TTCACAACTTGGATTTTGGGTTT 57.572 34.783 0.00 0.00 0.00 3.27
3859 7296 6.546428 TTCACAACTTGGATTTTGGGTTTA 57.454 33.333 0.00 0.00 0.00 2.01
3860 7297 6.739331 TCACAACTTGGATTTTGGGTTTAT 57.261 33.333 0.00 0.00 0.00 1.40
3861 7298 6.754193 TCACAACTTGGATTTTGGGTTTATC 58.246 36.000 0.00 0.00 0.00 1.75
3862 7299 6.325028 TCACAACTTGGATTTTGGGTTTATCA 59.675 34.615 0.00 0.00 0.00 2.15
3863 7300 6.423604 CACAACTTGGATTTTGGGTTTATCAC 59.576 38.462 0.00 0.00 0.00 3.06
3864 7301 6.098982 ACAACTTGGATTTTGGGTTTATCACA 59.901 34.615 0.00 0.00 0.00 3.58
3865 7302 6.096673 ACTTGGATTTTGGGTTTATCACAC 57.903 37.500 0.00 0.00 0.00 3.82
3866 7303 5.838521 ACTTGGATTTTGGGTTTATCACACT 59.161 36.000 0.00 0.00 0.00 3.55
3867 7304 7.007723 ACTTGGATTTTGGGTTTATCACACTA 58.992 34.615 0.00 0.00 0.00 2.74
3868 7305 6.827586 TGGATTTTGGGTTTATCACACTAC 57.172 37.500 0.00 0.00 0.00 2.73
3869 7306 6.548321 TGGATTTTGGGTTTATCACACTACT 58.452 36.000 0.00 0.00 0.00 2.57
3870 7307 6.657541 TGGATTTTGGGTTTATCACACTACTC 59.342 38.462 0.00 0.00 0.00 2.59
3871 7308 6.095021 GGATTTTGGGTTTATCACACTACTCC 59.905 42.308 0.00 0.00 0.00 3.85
3872 7309 4.563140 TTGGGTTTATCACACTACTCCC 57.437 45.455 0.00 0.00 34.77 4.30
3873 7310 3.522759 TGGGTTTATCACACTACTCCCA 58.477 45.455 0.00 0.00 40.90 4.37
3874 7311 3.911260 TGGGTTTATCACACTACTCCCAA 59.089 43.478 0.00 0.00 40.33 4.12
3875 7312 4.351407 TGGGTTTATCACACTACTCCCAAA 59.649 41.667 0.00 0.00 40.33 3.28
3876 7313 4.941873 GGGTTTATCACACTACTCCCAAAG 59.058 45.833 0.00 0.00 34.39 2.77
3877 7314 5.514310 GGGTTTATCACACTACTCCCAAAGT 60.514 44.000 0.00 0.00 42.33 2.66
3878 7315 5.411669 GGTTTATCACACTACTCCCAAAGTG 59.588 44.000 1.10 1.10 46.84 3.16
3883 7320 3.045601 CACTACTCCCAAAGTGTCTGG 57.954 52.381 0.00 0.00 39.11 3.86
3884 7321 2.632996 CACTACTCCCAAAGTGTCTGGA 59.367 50.000 0.00 0.00 39.11 3.86
3886 7323 3.944476 CTCCCAAAGTGTCTGGAGG 57.056 57.895 0.00 0.00 40.59 4.30
3887 7324 0.322008 CTCCCAAAGTGTCTGGAGGC 60.322 60.000 0.00 0.00 40.59 4.70
3888 7325 1.059584 TCCCAAAGTGTCTGGAGGCA 61.060 55.000 0.00 0.00 35.85 4.75
3889 7326 0.178992 CCCAAAGTGTCTGGAGGCAA 60.179 55.000 0.00 0.00 35.85 4.52
3890 7327 1.548582 CCCAAAGTGTCTGGAGGCAAT 60.549 52.381 0.00 0.00 35.85 3.56
3891 7328 1.815003 CCAAAGTGTCTGGAGGCAATC 59.185 52.381 0.00 0.00 35.85 2.67
3892 7329 2.507484 CAAAGTGTCTGGAGGCAATCA 58.493 47.619 0.00 0.00 0.00 2.57
3893 7330 2.886523 CAAAGTGTCTGGAGGCAATCAA 59.113 45.455 0.00 0.00 0.00 2.57
3894 7331 2.957402 AGTGTCTGGAGGCAATCAAA 57.043 45.000 0.00 0.00 0.00 2.69
3895 7332 2.787994 AGTGTCTGGAGGCAATCAAAG 58.212 47.619 0.00 0.00 0.00 2.77
3896 7333 2.107204 AGTGTCTGGAGGCAATCAAAGT 59.893 45.455 0.00 0.00 0.00 2.66
3897 7334 2.887152 GTGTCTGGAGGCAATCAAAGTT 59.113 45.455 0.00 0.00 0.00 2.66
3898 7335 3.057946 GTGTCTGGAGGCAATCAAAGTTC 60.058 47.826 0.00 0.00 0.00 3.01
3899 7336 3.149196 GTCTGGAGGCAATCAAAGTTCA 58.851 45.455 0.00 0.00 0.00 3.18
3900 7337 3.569701 GTCTGGAGGCAATCAAAGTTCAA 59.430 43.478 0.00 0.00 0.00 2.69
3901 7338 4.037923 GTCTGGAGGCAATCAAAGTTCAAA 59.962 41.667 0.00 0.00 0.00 2.69
3902 7339 4.648762 TCTGGAGGCAATCAAAGTTCAAAA 59.351 37.500 0.00 0.00 0.00 2.44
3903 7340 5.128499 TCTGGAGGCAATCAAAGTTCAAAAA 59.872 36.000 0.00 0.00 0.00 1.94
3904 7341 5.115480 TGGAGGCAATCAAAGTTCAAAAAC 58.885 37.500 0.00 0.00 35.50 2.43
3906 7343 5.463392 GGAGGCAATCAAAGTTCAAAAACTC 59.537 40.000 0.00 0.00 45.07 3.01
3907 7344 6.225981 AGGCAATCAAAGTTCAAAAACTCT 57.774 33.333 0.00 0.00 45.07 3.24
3908 7345 7.346751 AGGCAATCAAAGTTCAAAAACTCTA 57.653 32.000 0.00 0.00 45.07 2.43
3909 7346 7.781056 AGGCAATCAAAGTTCAAAAACTCTAA 58.219 30.769 0.00 0.00 45.07 2.10
3910 7347 7.706607 AGGCAATCAAAGTTCAAAAACTCTAAC 59.293 33.333 0.00 0.00 45.07 2.34
3911 7348 7.305993 GGCAATCAAAGTTCAAAAACTCTAACG 60.306 37.037 0.00 0.00 45.07 3.18
3912 7349 7.220108 GCAATCAAAGTTCAAAAACTCTAACGT 59.780 33.333 0.00 0.00 45.07 3.99
3913 7350 9.710979 CAATCAAAGTTCAAAAACTCTAACGTA 57.289 29.630 0.00 0.00 45.07 3.57
3918 7355 9.511144 AAAGTTCAAAAACTCTAACGTAATTGG 57.489 29.630 0.00 0.00 45.07 3.16
3919 7356 8.441312 AGTTCAAAAACTCTAACGTAATTGGA 57.559 30.769 0.00 0.00 42.10 3.53
3926 7363 5.868177 CTCTAACGTAATTGGAGCTAACG 57.132 43.478 0.00 0.00 38.87 3.18
3927 7364 5.565592 TCTAACGTAATTGGAGCTAACGA 57.434 39.130 1.95 0.00 37.04 3.85
3928 7365 5.953183 TCTAACGTAATTGGAGCTAACGAA 58.047 37.500 1.95 0.00 37.04 3.85
3929 7366 6.032094 TCTAACGTAATTGGAGCTAACGAAG 58.968 40.000 1.95 0.33 37.04 3.79
3930 7367 8.100905 CTCTAACGTAATTGGAGCTAACGAAGT 61.101 40.741 1.95 0.00 40.18 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.464168 CCCAACTTTTGACTTCTAATGCAG 58.536 41.667 0.00 0.00 0.00 4.41
12 13 5.535030 GTCACCCCAACTTTTGACTTCTAAT 59.465 40.000 0.00 0.00 36.29 1.73
99 133 0.472471 TAGAGGGGCGGCCTTTATTG 59.528 55.000 28.80 0.00 0.00 1.90
122 156 7.561021 TCTACTATCAGTAGCTGACAAGAAG 57.439 40.000 13.76 4.96 45.93 2.85
222 256 3.071479 TCTAATCACGTGGCAGGAAAAC 58.929 45.455 17.00 0.00 0.00 2.43
259 293 1.530771 GCACCAGATCAGATGGGCT 59.469 57.895 4.64 0.00 42.48 5.19
263 297 1.890979 GCCGGCACCAGATCAGATG 60.891 63.158 24.80 0.00 0.00 2.90
282 318 8.233190 CCTCTAGAAAAAGTTGCATTGTTCTAG 58.767 37.037 23.12 23.12 42.83 2.43
379 450 1.060713 CCTACAAAGCTCACGTCGTG 58.939 55.000 19.38 19.38 34.45 4.35
381 452 0.388649 AGCCTACAAAGCTCACGTCG 60.389 55.000 0.00 0.00 34.91 5.12
389 460 4.783764 AAATGTGGTAAGCCTACAAAGC 57.216 40.909 0.00 0.00 32.48 3.51
403 474 6.434028 TCAATTAAGAGGGTCAGAAAATGTGG 59.566 38.462 0.00 0.00 0.00 4.17
463 534 1.202486 TGTCTCCGTCGCAGAAAAAGT 60.202 47.619 0.00 0.00 39.69 2.66
471 542 1.736126 CTAACTACTGTCTCCGTCGCA 59.264 52.381 0.00 0.00 0.00 5.10
477 548 4.739195 CACTTGCTCTAACTACTGTCTCC 58.261 47.826 0.00 0.00 0.00 3.71
488 559 5.504010 GCATAAATAAGCGCACTTGCTCTAA 60.504 40.000 11.47 0.00 46.60 2.10
497 568 2.785477 CAGCAAGCATAAATAAGCGCAC 59.215 45.455 11.47 0.00 35.48 5.34
501 572 5.464389 CCCATTTCAGCAAGCATAAATAAGC 59.536 40.000 0.00 0.00 0.00 3.09
507 578 2.760092 GGACCCATTTCAGCAAGCATAA 59.240 45.455 0.00 0.00 0.00 1.90
547 623 6.927294 CCATCCTGGTAAGTCTAAATGAAC 57.073 41.667 0.00 0.00 31.35 3.18
562 638 5.602978 ACACTATAAGGTCTTACCATCCTGG 59.397 44.000 0.00 0.00 41.95 4.45
723 799 9.566432 ACTAAAAATGGCAATTAAATTTGGACA 57.434 25.926 0.00 0.00 0.00 4.02
724 800 9.824534 CACTAAAAATGGCAATTAAATTTGGAC 57.175 29.630 0.00 0.00 0.00 4.02
725 801 9.566432 ACACTAAAAATGGCAATTAAATTTGGA 57.434 25.926 0.00 0.00 0.00 3.53
732 808 9.364989 GCAGATAACACTAAAAATGGCAATTAA 57.635 29.630 0.00 0.00 0.00 1.40
733 809 7.700234 CGCAGATAACACTAAAAATGGCAATTA 59.300 33.333 0.00 0.00 0.00 1.40
734 810 6.531240 CGCAGATAACACTAAAAATGGCAATT 59.469 34.615 0.00 0.00 0.00 2.32
735 811 6.035843 CGCAGATAACACTAAAAATGGCAAT 58.964 36.000 0.00 0.00 0.00 3.56
736 812 5.182190 TCGCAGATAACACTAAAAATGGCAA 59.818 36.000 0.00 0.00 0.00 4.52
737 813 4.697828 TCGCAGATAACACTAAAAATGGCA 59.302 37.500 0.00 0.00 0.00 4.92
738 814 5.229921 TCGCAGATAACACTAAAAATGGC 57.770 39.130 0.00 0.00 0.00 4.40
739 815 6.742718 CAGTTCGCAGATAACACTAAAAATGG 59.257 38.462 0.00 0.00 35.04 3.16
740 816 7.298122 ACAGTTCGCAGATAACACTAAAAATG 58.702 34.615 0.00 0.00 35.04 2.32
741 817 7.435068 ACAGTTCGCAGATAACACTAAAAAT 57.565 32.000 0.00 0.00 35.04 1.82
745 821 5.294356 ACAACAGTTCGCAGATAACACTAA 58.706 37.500 0.00 0.00 35.04 2.24
819 896 1.142667 TGACCAAGTTGGCATGAGTCA 59.857 47.619 22.25 13.57 42.67 3.41
820 897 1.808945 CTGACCAAGTTGGCATGAGTC 59.191 52.381 22.25 11.06 42.67 3.36
821 898 1.421268 TCTGACCAAGTTGGCATGAGT 59.579 47.619 22.25 0.35 42.67 3.41
824 901 3.256383 TCAAATCTGACCAAGTTGGCATG 59.744 43.478 22.25 14.31 42.67 4.06
825 902 3.499338 TCAAATCTGACCAAGTTGGCAT 58.501 40.909 22.25 2.86 42.67 4.40
826 903 2.942804 TCAAATCTGACCAAGTTGGCA 58.057 42.857 22.25 18.19 42.67 4.92
848 925 5.003804 TCATTACTTTTGAGAGGAAGTGGC 58.996 41.667 0.00 0.00 36.79 5.01
869 946 9.872757 GACTAAATTTCAAACATAAGTTCGTCA 57.127 29.630 0.00 0.00 36.84 4.35
905 982 9.098355 TGAGTAGATAATTGAATGCAGTTGTAC 57.902 33.333 0.00 0.00 0.00 2.90
1018 1095 7.339721 AGCATCATCTGAATTGAAATGAGAAGT 59.660 33.333 0.00 0.00 32.09 3.01
1091 1168 8.537016 ACTTTACATGGTAATAGTTCTACAGCA 58.463 33.333 0.00 0.00 0.00 4.41
1147 1227 6.953520 TGGAAAGAAACTAATGAATCCACCAT 59.046 34.615 0.00 0.00 31.12 3.55
1175 1399 9.294030 CACATAAGATGGAAGCTTGATAAAAAC 57.706 33.333 2.10 0.00 45.56 2.43
1253 1477 3.132925 CAGGTTCAAAGTTTTGCCCATG 58.867 45.455 12.53 0.00 38.05 3.66
1473 1775 8.473219 TCAGTAGTCTACGTAAGATCTGAACTA 58.527 37.037 0.00 0.00 36.88 2.24
1546 1848 7.587757 GCTTGTGTACATTTCACACTCTTAAAG 59.412 37.037 0.00 3.57 45.26 1.85
1577 1885 9.409312 CATTTGTATCAAAAGAAGCACATGTAA 57.591 29.630 0.00 0.00 0.00 2.41
1611 1919 2.689983 GGGGGCTATGTTGAATCAGTTG 59.310 50.000 0.00 0.00 0.00 3.16
1619 1927 0.912487 ACGGAAGGGGGCTATGTTGA 60.912 55.000 0.00 0.00 0.00 3.18
1645 1962 8.719645 AGGATTCATAATAGAGCTTCTACAGT 57.280 34.615 0.00 0.00 30.79 3.55
1815 2141 1.388093 CAGTTCGTTGATCTGCTCACG 59.612 52.381 0.00 0.00 32.17 4.35
1871 2197 2.413765 GCATGCTTCACTGCAGTACTTG 60.414 50.000 21.20 16.85 46.71 3.16
1898 2224 0.466739 TGCGGGCTTCGAGATACCTA 60.467 55.000 4.34 0.00 42.43 3.08
1981 2307 0.683973 CCAGCGAATATCCTCAGGCT 59.316 55.000 0.00 0.00 0.00 4.58
2025 2357 5.957798 TGGAATGAAATCACTTGAGCATTC 58.042 37.500 16.34 16.34 38.66 2.67
2070 2408 8.767085 TGAAAATGAAAACAATCAGAAGAATGC 58.233 29.630 0.00 0.00 31.76 3.56
2078 2416 8.013378 GGCTGAAATGAAAATGAAAACAATCAG 58.987 33.333 0.00 0.00 35.46 2.90
2402 2801 4.086547 GGGGTTGCATTGGCCAGC 62.087 66.667 5.11 7.97 40.13 4.85
2504 3563 8.924303 ACCTTAAAGAAAGCCTCAAATACTTTT 58.076 29.630 0.00 0.00 33.91 2.27
2545 3604 5.533903 CAGAATCAGGGTAATGAAAGGATGG 59.466 44.000 0.00 0.00 31.76 3.51
2694 3903 4.411256 ACTTTCCTCGTTGTCCTTGTAA 57.589 40.909 0.00 0.00 0.00 2.41
2724 3933 4.637091 TCTGGATCAATGTGCTTGTACATG 59.363 41.667 5.19 0.00 40.24 3.21
3036 4258 5.164233 CAAGCATCCTCAACGTATCGATAT 58.836 41.667 8.66 0.00 0.00 1.63
3037 4259 4.546570 CAAGCATCCTCAACGTATCGATA 58.453 43.478 0.00 0.00 0.00 2.92
3038 4260 3.384668 CAAGCATCCTCAACGTATCGAT 58.615 45.455 2.16 2.16 0.00 3.59
3039 4261 2.481276 CCAAGCATCCTCAACGTATCGA 60.481 50.000 0.00 0.00 0.00 3.59
3160 4386 7.954788 TTAGTGTTTCAAATTATTGGCCAAC 57.045 32.000 23.27 4.96 37.15 3.77
3197 4423 7.798071 ACAGATGGAAGACGGGTAAATAATAA 58.202 34.615 0.00 0.00 0.00 1.40
3207 4433 8.848474 ATAATAAAATACAGATGGAAGACGGG 57.152 34.615 0.00 0.00 0.00 5.28
3245 4471 4.038282 CCTGAAATGGCAGCTGCATATTAA 59.962 41.667 37.63 24.23 44.36 1.40
3278 4504 5.992217 TGGGGAAATGGTAAAAACAAATTCG 59.008 36.000 0.00 0.00 0.00 3.34
3279 4505 7.500892 ACTTGGGGAAATGGTAAAAACAAATTC 59.499 33.333 0.00 0.00 0.00 2.17
3306 4537 4.596354 TGCGGAGGGTATATATGGAGTA 57.404 45.455 0.00 0.00 0.00 2.59
3552 6989 1.681264 CCAAAACCTTGACACCCACTC 59.319 52.381 0.00 0.00 34.14 3.51
3609 7046 7.067737 TGGTGTACATCATCAACGACTAGATAA 59.932 37.037 4.22 0.00 33.84 1.75
3612 7049 4.703093 TGGTGTACATCATCAACGACTAGA 59.297 41.667 4.22 0.00 33.84 2.43
3613 7050 4.993905 TGGTGTACATCATCAACGACTAG 58.006 43.478 4.22 0.00 33.84 2.57
3614 7051 4.142249 CCTGGTGTACATCATCAACGACTA 60.142 45.833 9.77 0.00 36.67 2.59
3615 7052 3.368427 CCTGGTGTACATCATCAACGACT 60.368 47.826 9.77 0.00 36.67 4.18
3620 7057 2.093711 CCGACCTGGTGTACATCATCAA 60.094 50.000 9.77 0.00 36.67 2.57
3621 7058 1.480545 CCGACCTGGTGTACATCATCA 59.519 52.381 9.77 0.48 35.67 3.07
3622 7059 2.225068 CCGACCTGGTGTACATCATC 57.775 55.000 9.77 4.42 0.00 2.92
3633 7070 1.115467 AATAGCTCTCACCGACCTGG 58.885 55.000 0.00 0.00 46.41 4.45
3634 7071 2.969628 AAATAGCTCTCACCGACCTG 57.030 50.000 0.00 0.00 0.00 4.00
3635 7072 3.181489 CGTAAAATAGCTCTCACCGACCT 60.181 47.826 0.00 0.00 0.00 3.85
3636 7073 3.114065 CGTAAAATAGCTCTCACCGACC 58.886 50.000 0.00 0.00 0.00 4.79
3637 7074 3.790288 GTCGTAAAATAGCTCTCACCGAC 59.210 47.826 0.00 0.00 35.96 4.79
3638 7075 3.181493 GGTCGTAAAATAGCTCTCACCGA 60.181 47.826 0.00 0.00 0.00 4.69
3639 7076 3.114065 GGTCGTAAAATAGCTCTCACCG 58.886 50.000 0.00 0.00 0.00 4.94
3640 7077 3.114065 CGGTCGTAAAATAGCTCTCACC 58.886 50.000 0.00 0.00 0.00 4.02
3641 7078 4.025015 TCGGTCGTAAAATAGCTCTCAC 57.975 45.455 0.00 0.00 0.00 3.51
3642 7079 3.693085 ACTCGGTCGTAAAATAGCTCTCA 59.307 43.478 0.00 0.00 0.00 3.27
3643 7080 4.290104 ACTCGGTCGTAAAATAGCTCTC 57.710 45.455 0.00 0.00 0.00 3.20
3644 7081 4.157289 TGAACTCGGTCGTAAAATAGCTCT 59.843 41.667 0.00 0.00 0.00 4.09
3645 7082 4.264849 GTGAACTCGGTCGTAAAATAGCTC 59.735 45.833 0.00 0.00 0.00 4.09
3646 7083 4.171754 GTGAACTCGGTCGTAAAATAGCT 58.828 43.478 0.00 0.00 0.00 3.32
3647 7084 3.001365 CGTGAACTCGGTCGTAAAATAGC 60.001 47.826 0.00 0.00 0.00 2.97
3648 7085 3.545078 CCGTGAACTCGGTCGTAAAATAG 59.455 47.826 7.08 0.00 44.77 1.73
3649 7086 3.500982 CCGTGAACTCGGTCGTAAAATA 58.499 45.455 7.08 0.00 44.77 1.40
3650 7087 2.331194 CCGTGAACTCGGTCGTAAAAT 58.669 47.619 7.08 0.00 44.77 1.82
3651 7088 1.769733 CCGTGAACTCGGTCGTAAAA 58.230 50.000 7.08 0.00 44.77 1.52
3652 7089 3.477504 CCGTGAACTCGGTCGTAAA 57.522 52.632 7.08 0.00 44.77 2.01
3660 7097 3.834610 ACTCTATTGTTCCGTGAACTCG 58.165 45.455 14.95 0.00 42.39 4.18
3661 7098 6.527372 GTCTAACTCTATTGTTCCGTGAACTC 59.473 42.308 14.95 0.00 42.39 3.01
3662 7099 6.015688 TGTCTAACTCTATTGTTCCGTGAACT 60.016 38.462 14.95 2.50 42.39 3.01
3663 7100 6.154445 TGTCTAACTCTATTGTTCCGTGAAC 58.846 40.000 9.13 9.13 42.26 3.18
3664 7101 6.335471 TGTCTAACTCTATTGTTCCGTGAA 57.665 37.500 0.00 0.00 0.00 3.18
3665 7102 5.970317 TGTCTAACTCTATTGTTCCGTGA 57.030 39.130 0.00 0.00 0.00 4.35
3666 7103 5.347907 GGTTGTCTAACTCTATTGTTCCGTG 59.652 44.000 0.00 0.00 36.99 4.94
3667 7104 5.476614 GGTTGTCTAACTCTATTGTTCCGT 58.523 41.667 0.00 0.00 36.99 4.69
3668 7105 4.561606 CGGTTGTCTAACTCTATTGTTCCG 59.438 45.833 0.00 0.00 36.99 4.30
3669 7106 4.868734 CCGGTTGTCTAACTCTATTGTTCC 59.131 45.833 0.00 0.00 36.99 3.62
3670 7107 5.476614 ACCGGTTGTCTAACTCTATTGTTC 58.523 41.667 0.00 0.00 36.99 3.18
3671 7108 5.476614 GACCGGTTGTCTAACTCTATTGTT 58.523 41.667 9.42 0.00 41.03 2.83
3672 7109 5.069501 GACCGGTTGTCTAACTCTATTGT 57.930 43.478 9.42 0.00 41.03 2.71
3694 7131 5.235186 CGCCTTATTACACTCCATCTGAAAG 59.765 44.000 0.00 0.00 0.00 2.62
3695 7132 5.116180 CGCCTTATTACACTCCATCTGAAA 58.884 41.667 0.00 0.00 0.00 2.69
3696 7133 4.161565 ACGCCTTATTACACTCCATCTGAA 59.838 41.667 0.00 0.00 0.00 3.02
3697 7134 3.704566 ACGCCTTATTACACTCCATCTGA 59.295 43.478 0.00 0.00 0.00 3.27
3698 7135 4.060038 ACGCCTTATTACACTCCATCTG 57.940 45.455 0.00 0.00 0.00 2.90
3699 7136 5.864418 TTACGCCTTATTACACTCCATCT 57.136 39.130 0.00 0.00 0.00 2.90
3700 7137 7.331193 CCTTATTACGCCTTATTACACTCCATC 59.669 40.741 0.00 0.00 0.00 3.51
3701 7138 7.159372 CCTTATTACGCCTTATTACACTCCAT 58.841 38.462 0.00 0.00 0.00 3.41
3702 7139 6.518493 CCTTATTACGCCTTATTACACTCCA 58.482 40.000 0.00 0.00 0.00 3.86
3703 7140 5.407691 GCCTTATTACGCCTTATTACACTCC 59.592 44.000 0.00 0.00 0.00 3.85
3704 7141 5.118203 CGCCTTATTACGCCTTATTACACTC 59.882 44.000 0.00 0.00 0.00 3.51
3705 7142 4.986659 CGCCTTATTACGCCTTATTACACT 59.013 41.667 0.00 0.00 0.00 3.55
3706 7143 4.151157 CCGCCTTATTACGCCTTATTACAC 59.849 45.833 0.00 0.00 0.00 2.90
3707 7144 4.309099 CCGCCTTATTACGCCTTATTACA 58.691 43.478 0.00 0.00 0.00 2.41
3708 7145 3.124128 GCCGCCTTATTACGCCTTATTAC 59.876 47.826 0.00 0.00 0.00 1.89
3709 7146 3.244146 TGCCGCCTTATTACGCCTTATTA 60.244 43.478 0.00 0.00 0.00 0.98
3710 7147 2.148768 GCCGCCTTATTACGCCTTATT 58.851 47.619 0.00 0.00 0.00 1.40
3711 7148 1.071071 TGCCGCCTTATTACGCCTTAT 59.929 47.619 0.00 0.00 0.00 1.73
3712 7149 0.464870 TGCCGCCTTATTACGCCTTA 59.535 50.000 0.00 0.00 0.00 2.69
3713 7150 0.814010 CTGCCGCCTTATTACGCCTT 60.814 55.000 0.00 0.00 0.00 4.35
3714 7151 1.227556 CTGCCGCCTTATTACGCCT 60.228 57.895 0.00 0.00 0.00 5.52
3715 7152 2.251642 CCTGCCGCCTTATTACGCC 61.252 63.158 0.00 0.00 0.00 5.68
3716 7153 2.251642 CCCTGCCGCCTTATTACGC 61.252 63.158 0.00 0.00 0.00 4.42
3717 7154 2.251642 GCCCTGCCGCCTTATTACG 61.252 63.158 0.00 0.00 0.00 3.18
3718 7155 1.897137 GGCCCTGCCGCCTTATTAC 60.897 63.158 0.00 0.00 46.10 1.89
3719 7156 2.513895 GGCCCTGCCGCCTTATTA 59.486 61.111 0.00 0.00 46.10 0.98
3729 7166 4.740822 ACAACCATCCGGCCCTGC 62.741 66.667 0.00 0.00 34.57 4.85
3730 7167 2.438434 GACAACCATCCGGCCCTG 60.438 66.667 0.00 0.00 34.57 4.45
3731 7168 2.833151 TAGGACAACCATCCGGCCCT 62.833 60.000 0.00 0.00 44.22 5.19
3732 7169 1.705997 ATAGGACAACCATCCGGCCC 61.706 60.000 0.00 0.00 44.22 5.80
3733 7170 0.535102 CATAGGACAACCATCCGGCC 60.535 60.000 0.00 0.00 44.22 6.13
3734 7171 0.535102 CCATAGGACAACCATCCGGC 60.535 60.000 0.00 0.00 44.22 6.13
3735 7172 1.070758 CTCCATAGGACAACCATCCGG 59.929 57.143 0.00 0.00 44.22 5.14
3736 7173 1.762957 ACTCCATAGGACAACCATCCG 59.237 52.381 0.00 0.00 44.22 4.18
3737 7174 3.933861 AACTCCATAGGACAACCATCC 57.066 47.619 0.00 0.00 39.28 3.51
3738 7175 6.316390 CACTAAAACTCCATAGGACAACCATC 59.684 42.308 0.00 0.00 38.94 3.51
3739 7176 6.180472 CACTAAAACTCCATAGGACAACCAT 58.820 40.000 0.00 0.00 38.94 3.55
3740 7177 5.514136 CCACTAAAACTCCATAGGACAACCA 60.514 44.000 0.00 0.00 38.94 3.67
3741 7178 4.941873 CCACTAAAACTCCATAGGACAACC 59.058 45.833 0.00 0.00 0.00 3.77
3742 7179 5.557866 ACCACTAAAACTCCATAGGACAAC 58.442 41.667 0.00 0.00 0.00 3.32
3743 7180 5.280317 GGACCACTAAAACTCCATAGGACAA 60.280 44.000 0.00 0.00 0.00 3.18
3744 7181 4.224370 GGACCACTAAAACTCCATAGGACA 59.776 45.833 0.00 0.00 0.00 4.02
3745 7182 4.470304 AGGACCACTAAAACTCCATAGGAC 59.530 45.833 0.00 0.00 0.00 3.85
3746 7183 4.695606 AGGACCACTAAAACTCCATAGGA 58.304 43.478 0.00 0.00 0.00 2.94
3747 7184 5.437191 AAGGACCACTAAAACTCCATAGG 57.563 43.478 0.00 0.00 0.00 2.57
3748 7185 6.151144 CCAAAAGGACCACTAAAACTCCATAG 59.849 42.308 0.00 0.00 0.00 2.23
3749 7186 6.007703 CCAAAAGGACCACTAAAACTCCATA 58.992 40.000 0.00 0.00 0.00 2.74
3750 7187 4.832823 CCAAAAGGACCACTAAAACTCCAT 59.167 41.667 0.00 0.00 0.00 3.41
3751 7188 4.079672 TCCAAAAGGACCACTAAAACTCCA 60.080 41.667 0.00 0.00 0.00 3.86
3752 7189 4.466827 TCCAAAAGGACCACTAAAACTCC 58.533 43.478 0.00 0.00 0.00 3.85
3753 7190 6.459670 TTTCCAAAAGGACCACTAAAACTC 57.540 37.500 0.00 0.00 0.00 3.01
3754 7191 5.362717 CCTTTCCAAAAGGACCACTAAAACT 59.637 40.000 12.19 0.00 39.81 2.66
3755 7192 5.128171 ACCTTTCCAAAAGGACCACTAAAAC 59.872 40.000 22.03 0.00 39.81 2.43
3756 7193 5.128008 CACCTTTCCAAAAGGACCACTAAAA 59.872 40.000 22.03 0.00 39.81 1.52
3757 7194 4.647399 CACCTTTCCAAAAGGACCACTAAA 59.353 41.667 22.03 0.00 39.81 1.85
3758 7195 4.079672 TCACCTTTCCAAAAGGACCACTAA 60.080 41.667 22.03 0.66 39.81 2.24
3759 7196 3.460340 TCACCTTTCCAAAAGGACCACTA 59.540 43.478 22.03 1.78 39.81 2.74
3760 7197 2.243736 TCACCTTTCCAAAAGGACCACT 59.756 45.455 22.03 0.00 39.81 4.00
3761 7198 2.661718 TCACCTTTCCAAAAGGACCAC 58.338 47.619 22.03 0.00 39.81 4.16
3762 7199 3.611025 ATCACCTTTCCAAAAGGACCA 57.389 42.857 22.03 7.95 39.81 4.02
3763 7200 3.895041 TCAATCACCTTTCCAAAAGGACC 59.105 43.478 22.03 0.00 39.81 4.46
3764 7201 5.509670 CCTTCAATCACCTTTCCAAAAGGAC 60.510 44.000 22.03 0.00 39.81 3.85
3765 7202 4.588528 CCTTCAATCACCTTTCCAAAAGGA 59.411 41.667 22.03 4.25 39.81 3.36
3766 7203 4.344968 ACCTTCAATCACCTTTCCAAAAGG 59.655 41.667 15.28 15.28 43.05 3.11
3767 7204 5.068987 TCACCTTCAATCACCTTTCCAAAAG 59.931 40.000 0.00 0.00 0.00 2.27
3768 7205 4.959210 TCACCTTCAATCACCTTTCCAAAA 59.041 37.500 0.00 0.00 0.00 2.44
3769 7206 4.340950 GTCACCTTCAATCACCTTTCCAAA 59.659 41.667 0.00 0.00 0.00 3.28
3770 7207 3.888930 GTCACCTTCAATCACCTTTCCAA 59.111 43.478 0.00 0.00 0.00 3.53
3771 7208 3.486383 GTCACCTTCAATCACCTTTCCA 58.514 45.455 0.00 0.00 0.00 3.53
3772 7209 2.820197 GGTCACCTTCAATCACCTTTCC 59.180 50.000 0.00 0.00 0.00 3.13
3773 7210 3.756117 AGGTCACCTTCAATCACCTTTC 58.244 45.455 0.00 0.00 33.41 2.62
3774 7211 3.884037 AGGTCACCTTCAATCACCTTT 57.116 42.857 0.00 0.00 33.41 3.11
3775 7212 3.884037 AAGGTCACCTTCAATCACCTT 57.116 42.857 2.03 0.00 40.17 3.50
3776 7213 3.910627 ACTAAGGTCACCTTCAATCACCT 59.089 43.478 14.05 0.00 43.57 4.00
3777 7214 4.003648 CACTAAGGTCACCTTCAATCACC 58.996 47.826 14.05 0.00 43.57 4.02
3778 7215 3.437049 GCACTAAGGTCACCTTCAATCAC 59.563 47.826 14.05 0.00 43.57 3.06
3779 7216 3.072330 TGCACTAAGGTCACCTTCAATCA 59.928 43.478 14.05 4.89 43.57 2.57
3780 7217 3.437049 GTGCACTAAGGTCACCTTCAATC 59.563 47.826 14.05 2.08 43.57 2.67
3781 7218 3.181445 TGTGCACTAAGGTCACCTTCAAT 60.181 43.478 14.05 0.00 43.57 2.57
3782 7219 2.171659 TGTGCACTAAGGTCACCTTCAA 59.828 45.455 14.05 0.00 43.57 2.69
3783 7220 1.765904 TGTGCACTAAGGTCACCTTCA 59.234 47.619 14.05 1.27 43.57 3.02
3784 7221 2.543777 TGTGCACTAAGGTCACCTTC 57.456 50.000 14.05 0.00 43.57 3.46
3785 7222 3.508845 AATGTGCACTAAGGTCACCTT 57.491 42.857 15.19 15.19 46.63 3.50
3786 7223 3.508845 AAATGTGCACTAAGGTCACCT 57.491 42.857 19.41 0.00 33.87 4.00
3787 7224 3.900941 CAAAATGTGCACTAAGGTCACC 58.099 45.455 19.41 0.00 0.00 4.02
3800 7237 4.744137 TCTTGTGAAAATCCGCAAAATGTG 59.256 37.500 0.00 0.00 36.29 3.21
3801 7238 4.744631 GTCTTGTGAAAATCCGCAAAATGT 59.255 37.500 0.00 0.00 36.29 2.71
3802 7239 4.984161 AGTCTTGTGAAAATCCGCAAAATG 59.016 37.500 0.00 0.00 36.29 2.32
3803 7240 4.984161 CAGTCTTGTGAAAATCCGCAAAAT 59.016 37.500 0.00 0.00 36.29 1.82
3804 7241 4.142271 ACAGTCTTGTGAAAATCCGCAAAA 60.142 37.500 0.00 0.00 36.29 2.44
3805 7242 3.380004 ACAGTCTTGTGAAAATCCGCAAA 59.620 39.130 0.00 0.00 36.29 3.68
3806 7243 2.948979 ACAGTCTTGTGAAAATCCGCAA 59.051 40.909 0.00 0.00 35.83 4.85
3807 7244 2.571212 ACAGTCTTGTGAAAATCCGCA 58.429 42.857 0.00 0.00 35.83 5.69
3818 7255 4.458989 TGTGAAAAGAAAGCACAGTCTTGT 59.541 37.500 0.00 0.00 37.60 3.16
3819 7256 4.985413 TGTGAAAAGAAAGCACAGTCTTG 58.015 39.130 0.00 0.00 37.60 3.02
3820 7257 5.183904 AGTTGTGAAAAGAAAGCACAGTCTT 59.816 36.000 0.00 0.00 42.70 3.01
3821 7258 4.702131 AGTTGTGAAAAGAAAGCACAGTCT 59.298 37.500 0.00 0.00 42.70 3.24
3822 7259 4.986622 AGTTGTGAAAAGAAAGCACAGTC 58.013 39.130 0.00 0.00 42.70 3.51
3823 7260 5.163513 CAAGTTGTGAAAAGAAAGCACAGT 58.836 37.500 0.00 0.00 42.70 3.55
3824 7261 4.563976 CCAAGTTGTGAAAAGAAAGCACAG 59.436 41.667 1.45 0.00 42.70 3.66
3825 7262 4.219507 TCCAAGTTGTGAAAAGAAAGCACA 59.780 37.500 1.45 0.00 40.44 4.57
3826 7263 4.743493 TCCAAGTTGTGAAAAGAAAGCAC 58.257 39.130 1.45 0.00 0.00 4.40
3827 7264 5.596836 ATCCAAGTTGTGAAAAGAAAGCA 57.403 34.783 1.45 0.00 0.00 3.91
3828 7265 6.908870 AAATCCAAGTTGTGAAAAGAAAGC 57.091 33.333 1.45 0.00 0.00 3.51
3829 7266 7.201635 CCCAAAATCCAAGTTGTGAAAAGAAAG 60.202 37.037 1.45 0.00 0.00 2.62
3830 7267 6.597280 CCCAAAATCCAAGTTGTGAAAAGAAA 59.403 34.615 1.45 0.00 0.00 2.52
3831 7268 6.112058 CCCAAAATCCAAGTTGTGAAAAGAA 58.888 36.000 1.45 0.00 0.00 2.52
3832 7269 5.188751 ACCCAAAATCCAAGTTGTGAAAAGA 59.811 36.000 1.45 0.00 0.00 2.52
3833 7270 5.427378 ACCCAAAATCCAAGTTGTGAAAAG 58.573 37.500 1.45 0.00 0.00 2.27
3834 7271 5.428184 ACCCAAAATCCAAGTTGTGAAAA 57.572 34.783 1.45 0.00 0.00 2.29
3835 7272 5.428184 AACCCAAAATCCAAGTTGTGAAA 57.572 34.783 1.45 0.00 0.00 2.69
3836 7273 5.428184 AAACCCAAAATCCAAGTTGTGAA 57.572 34.783 1.45 0.00 0.00 3.18
3837 7274 6.325028 TGATAAACCCAAAATCCAAGTTGTGA 59.675 34.615 1.45 0.00 0.00 3.58
3838 7275 6.423604 GTGATAAACCCAAAATCCAAGTTGTG 59.576 38.462 1.45 0.00 0.00 3.33
3839 7276 6.098982 TGTGATAAACCCAAAATCCAAGTTGT 59.901 34.615 1.45 0.00 0.00 3.32
3840 7277 6.423604 GTGTGATAAACCCAAAATCCAAGTTG 59.576 38.462 0.00 0.00 0.00 3.16
3841 7278 6.326323 AGTGTGATAAACCCAAAATCCAAGTT 59.674 34.615 0.00 0.00 0.00 2.66
3842 7279 5.838521 AGTGTGATAAACCCAAAATCCAAGT 59.161 36.000 0.00 0.00 0.00 3.16
3843 7280 6.345096 AGTGTGATAAACCCAAAATCCAAG 57.655 37.500 0.00 0.00 0.00 3.61
3844 7281 7.007723 AGTAGTGTGATAAACCCAAAATCCAA 58.992 34.615 0.00 0.00 0.00 3.53
3845 7282 6.548321 AGTAGTGTGATAAACCCAAAATCCA 58.452 36.000 0.00 0.00 0.00 3.41
3846 7283 6.095021 GGAGTAGTGTGATAAACCCAAAATCC 59.905 42.308 0.00 0.00 0.00 3.01
3847 7284 6.095021 GGGAGTAGTGTGATAAACCCAAAATC 59.905 42.308 0.00 0.00 36.47 2.17
3848 7285 5.949952 GGGAGTAGTGTGATAAACCCAAAAT 59.050 40.000 0.00 0.00 36.47 1.82
3849 7286 5.163077 TGGGAGTAGTGTGATAAACCCAAAA 60.163 40.000 0.00 0.00 42.30 2.44
3850 7287 4.351407 TGGGAGTAGTGTGATAAACCCAAA 59.649 41.667 0.00 0.00 42.30 3.28
3851 7288 3.911260 TGGGAGTAGTGTGATAAACCCAA 59.089 43.478 0.00 0.00 42.30 4.12
3852 7289 3.522759 TGGGAGTAGTGTGATAAACCCA 58.477 45.455 0.00 0.00 42.90 4.51
3853 7290 4.563140 TTGGGAGTAGTGTGATAAACCC 57.437 45.455 0.00 0.00 36.92 4.11
3854 7291 5.411669 CACTTTGGGAGTAGTGTGATAAACC 59.588 44.000 0.00 0.00 36.65 3.27
3855 7292 6.481954 CACTTTGGGAGTAGTGTGATAAAC 57.518 41.667 0.00 0.00 36.65 2.01
3863 7300 2.632996 TCCAGACACTTTGGGAGTAGTG 59.367 50.000 0.00 0.00 45.61 2.74
3864 7301 2.900546 CTCCAGACACTTTGGGAGTAGT 59.099 50.000 0.00 0.00 41.58 2.73
3865 7302 2.234908 CCTCCAGACACTTTGGGAGTAG 59.765 54.545 0.00 0.00 44.34 2.57
3866 7303 2.257207 CCTCCAGACACTTTGGGAGTA 58.743 52.381 0.00 0.00 44.34 2.59
3867 7304 1.059913 CCTCCAGACACTTTGGGAGT 58.940 55.000 0.00 0.00 44.34 3.85
3868 7305 0.322008 GCCTCCAGACACTTTGGGAG 60.322 60.000 0.00 0.00 45.20 4.30
3869 7306 1.059584 TGCCTCCAGACACTTTGGGA 61.060 55.000 0.00 0.00 36.34 4.37
3870 7307 0.178992 TTGCCTCCAGACACTTTGGG 60.179 55.000 0.00 0.00 36.34 4.12
3871 7308 1.815003 GATTGCCTCCAGACACTTTGG 59.185 52.381 0.00 0.00 37.04 3.28
3872 7309 2.507484 TGATTGCCTCCAGACACTTTG 58.493 47.619 0.00 0.00 0.00 2.77
3873 7310 2.957402 TGATTGCCTCCAGACACTTT 57.043 45.000 0.00 0.00 0.00 2.66
3874 7311 2.957402 TTGATTGCCTCCAGACACTT 57.043 45.000 0.00 0.00 0.00 3.16
3875 7312 2.107204 ACTTTGATTGCCTCCAGACACT 59.893 45.455 0.00 0.00 0.00 3.55
3876 7313 2.508526 ACTTTGATTGCCTCCAGACAC 58.491 47.619 0.00 0.00 0.00 3.67
3877 7314 2.957402 ACTTTGATTGCCTCCAGACA 57.043 45.000 0.00 0.00 0.00 3.41
3878 7315 3.149196 TGAACTTTGATTGCCTCCAGAC 58.851 45.455 0.00 0.00 0.00 3.51
3879 7316 3.507162 TGAACTTTGATTGCCTCCAGA 57.493 42.857 0.00 0.00 0.00 3.86
3880 7317 4.589216 TTTGAACTTTGATTGCCTCCAG 57.411 40.909 0.00 0.00 0.00 3.86
3881 7318 5.104982 AGTTTTTGAACTTTGATTGCCTCCA 60.105 36.000 0.00 0.00 0.00 3.86
3882 7319 5.359756 AGTTTTTGAACTTTGATTGCCTCC 58.640 37.500 0.00 0.00 0.00 4.30
3883 7320 6.276091 AGAGTTTTTGAACTTTGATTGCCTC 58.724 36.000 0.00 0.00 32.22 4.70
3884 7321 6.225981 AGAGTTTTTGAACTTTGATTGCCT 57.774 33.333 0.00 0.00 32.22 4.75
3885 7322 7.305993 CGTTAGAGTTTTTGAACTTTGATTGCC 60.306 37.037 0.00 0.00 32.22 4.52
3886 7323 7.220108 ACGTTAGAGTTTTTGAACTTTGATTGC 59.780 33.333 0.00 0.00 32.22 3.56
3887 7324 8.614994 ACGTTAGAGTTTTTGAACTTTGATTG 57.385 30.769 0.00 0.00 32.22 2.67
3892 7329 9.511144 CCAATTACGTTAGAGTTTTTGAACTTT 57.489 29.630 0.00 0.00 32.22 2.66
3893 7330 8.895737 TCCAATTACGTTAGAGTTTTTGAACTT 58.104 29.630 0.00 0.00 32.22 2.66
3894 7331 8.441312 TCCAATTACGTTAGAGTTTTTGAACT 57.559 30.769 0.00 0.00 35.34 3.01
3895 7332 7.322938 GCTCCAATTACGTTAGAGTTTTTGAAC 59.677 37.037 0.00 0.00 29.53 3.18
3896 7333 7.227910 AGCTCCAATTACGTTAGAGTTTTTGAA 59.772 33.333 0.00 0.00 29.53 2.69
3897 7334 6.708949 AGCTCCAATTACGTTAGAGTTTTTGA 59.291 34.615 0.00 0.00 29.53 2.69
3898 7335 6.899114 AGCTCCAATTACGTTAGAGTTTTTG 58.101 36.000 0.00 0.00 29.53 2.44
3899 7336 8.501580 GTTAGCTCCAATTACGTTAGAGTTTTT 58.498 33.333 0.00 0.00 29.53 1.94
3900 7337 7.148689 CGTTAGCTCCAATTACGTTAGAGTTTT 60.149 37.037 0.00 0.00 29.53 2.43
3901 7338 6.309737 CGTTAGCTCCAATTACGTTAGAGTTT 59.690 38.462 0.00 0.00 29.53 2.66
3902 7339 5.803967 CGTTAGCTCCAATTACGTTAGAGTT 59.196 40.000 0.00 0.00 29.53 3.01
3903 7340 5.124457 TCGTTAGCTCCAATTACGTTAGAGT 59.876 40.000 0.00 0.00 34.15 3.24
3904 7341 5.575957 TCGTTAGCTCCAATTACGTTAGAG 58.424 41.667 0.00 0.00 34.15 2.43
3905 7342 5.565592 TCGTTAGCTCCAATTACGTTAGA 57.434 39.130 0.00 0.00 34.15 2.10
3906 7343 5.803967 ACTTCGTTAGCTCCAATTACGTTAG 59.196 40.000 0.00 0.00 34.15 2.34
3907 7344 5.713025 ACTTCGTTAGCTCCAATTACGTTA 58.287 37.500 0.00 0.00 34.15 3.18
3908 7345 4.563061 ACTTCGTTAGCTCCAATTACGTT 58.437 39.130 0.00 0.00 34.15 3.99
3909 7346 4.184079 ACTTCGTTAGCTCCAATTACGT 57.816 40.909 0.00 0.00 34.15 3.57
3910 7347 4.624024 TGAACTTCGTTAGCTCCAATTACG 59.376 41.667 0.00 0.00 0.00 3.18
3911 7348 6.663944 ATGAACTTCGTTAGCTCCAATTAC 57.336 37.500 0.00 0.00 0.00 1.89
3912 7349 8.365399 CATATGAACTTCGTTAGCTCCAATTA 57.635 34.615 0.00 0.00 0.00 1.40
3913 7350 7.251704 CATATGAACTTCGTTAGCTCCAATT 57.748 36.000 0.00 0.00 0.00 2.32
3914 7351 6.851222 CATATGAACTTCGTTAGCTCCAAT 57.149 37.500 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.