Multiple sequence alignment - TraesCS4A01G259100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G259100 chr4A 100.000 3297 0 0 1 3297 571776303 571779599 0.000000e+00 6089.0
1 TraesCS4A01G259100 chr4A 100.000 2976 0 0 3691 6666 571779993 571782968 0.000000e+00 5496.0
2 TraesCS4A01G259100 chr4A 99.010 101 1 0 6483 6583 571782684 571782784 1.480000e-41 182.0
3 TraesCS4A01G259100 chr4A 99.010 101 1 0 6382 6482 571782785 571782885 1.480000e-41 182.0
4 TraesCS4A01G259100 chr4A 96.250 80 3 0 6587 6666 621814879 621814800 1.510000e-26 132.0
5 TraesCS4A01G259100 chr4D 93.657 3090 104 40 258 3295 30961392 30958343 0.000000e+00 4536.0
6 TraesCS4A01G259100 chr4D 94.315 2779 96 36 3691 6450 30958279 30955544 0.000000e+00 4200.0
7 TraesCS4A01G259100 chr4D 90.000 200 11 5 60 250 30961654 30961455 3.990000e-62 250.0
8 TraesCS4A01G259100 chr4B 93.236 2942 121 40 399 3297 44189517 44186611 0.000000e+00 4259.0
9 TraesCS4A01G259100 chr4B 91.405 2071 111 34 4431 6482 44185874 44183852 0.000000e+00 2776.0
10 TraesCS4A01G259100 chr4B 89.350 723 44 12 3691 4406 44186559 44185863 0.000000e+00 878.0
11 TraesCS4A01G259100 chr4B 84.490 245 27 10 30 268 44190198 44189959 1.450000e-56 231.0
12 TraesCS4A01G259100 chr1A 100.000 74 0 0 6593 6666 109579536 109579463 3.240000e-28 137.0
13 TraesCS4A01G259100 chr3A 98.684 76 1 0 6591 6666 473085010 473084935 1.170000e-27 135.0
14 TraesCS4A01G259100 chr3A 94.186 86 5 0 6581 6666 411879191 411879276 1.510000e-26 132.0
15 TraesCS4A01G259100 chr5A 96.203 79 3 0 6588 6666 703671864 703671942 5.420000e-26 130.0
16 TraesCS4A01G259100 chr5A 93.023 86 5 1 6581 6666 81476674 81476758 2.520000e-24 124.0
17 TraesCS4A01G259100 chr5A 92.135 89 6 1 6579 6666 154345675 154345587 2.520000e-24 124.0
18 TraesCS4A01G259100 chr5A 89.855 69 5 2 2702 2768 363848059 363848127 3.310000e-13 87.9
19 TraesCS4A01G259100 chr7A 94.048 84 5 0 6583 6666 676923457 676923540 1.950000e-25 128.0
20 TraesCS4A01G259100 chr7A 93.976 83 5 0 6584 6666 158665086 158665168 7.020000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G259100 chr4A 571776303 571782968 6665 False 2987.250000 6089 99.505000 1 6666 4 chr4A.!!$F1 6665
1 TraesCS4A01G259100 chr4D 30955544 30961654 6110 True 2995.333333 4536 92.657333 60 6450 3 chr4D.!!$R1 6390
2 TraesCS4A01G259100 chr4B 44183852 44190198 6346 True 2036.000000 4259 89.620250 30 6482 4 chr4B.!!$R1 6452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.107165 GGGCATTGTCCTAGTCACCC 60.107 60.0 0.00 0.00 0.00 4.61 F
654 1017 0.175989 CTGGGTAAGAAGGGAGCGTC 59.824 60.0 0.00 0.00 0.00 5.19 F
948 1319 0.598680 CGCTGCAGCAGTAGTATCCC 60.599 60.0 36.03 4.51 42.21 3.85 F
2234 2635 0.744414 GCTTATGACCAGCTCGCCAA 60.744 55.0 0.00 0.00 34.15 4.52 F
2343 2744 0.895530 TGGTCGTGAAGAGGATCACC 59.104 55.0 0.00 0.00 45.51 4.02 F
4304 4711 0.791422 CGGTCCGTTACAAAATCGCA 59.209 50.0 2.08 0.00 0.00 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1925 1.613630 GGAGAGGTTGAGAGCCCCA 60.614 63.158 0.00 0.0 0.00 4.96 R
2343 2744 1.068474 CTTTCTTAGCGACACGGGTG 58.932 55.000 0.00 0.0 0.00 4.61 R
2871 3273 3.023832 GCCCATTTTGCACCATACTACT 58.976 45.455 0.00 0.0 0.00 2.57 R
3265 3668 2.809601 GCCACTACACGACAGCGG 60.810 66.667 0.00 0.0 43.17 5.52 R
4312 4719 0.038526 CAGGCTTGTAACGGACGAGT 60.039 55.000 0.00 0.0 41.23 4.18 R
5869 6296 0.179084 CACCAGGCAGGGTATACACG 60.179 60.000 5.01 0.0 43.89 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.065575 CACGGGCATTGTCCTAGTC 57.934 57.895 5.63 0.00 0.00 2.59
19 20 0.249120 CACGGGCATTGTCCTAGTCA 59.751 55.000 5.63 0.00 0.00 3.41
20 21 0.249398 ACGGGCATTGTCCTAGTCAC 59.751 55.000 5.63 0.00 0.00 3.67
21 22 0.462047 CGGGCATTGTCCTAGTCACC 60.462 60.000 5.63 0.00 0.00 4.02
22 23 0.107165 GGGCATTGTCCTAGTCACCC 60.107 60.000 0.00 0.00 0.00 4.61
23 24 0.912486 GGCATTGTCCTAGTCACCCT 59.088 55.000 0.00 0.00 0.00 4.34
24 25 2.116238 GGCATTGTCCTAGTCACCCTA 58.884 52.381 0.00 0.00 0.00 3.53
25 26 2.504175 GGCATTGTCCTAGTCACCCTAA 59.496 50.000 0.00 0.00 0.00 2.69
26 27 3.532542 GCATTGTCCTAGTCACCCTAAC 58.467 50.000 0.00 0.00 0.00 2.34
27 28 3.055385 GCATTGTCCTAGTCACCCTAACA 60.055 47.826 0.00 0.00 0.00 2.41
28 29 4.564821 GCATTGTCCTAGTCACCCTAACAA 60.565 45.833 0.00 0.00 33.23 2.83
35 36 5.072600 TCCTAGTCACCCTAACAACAACAAT 59.927 40.000 0.00 0.00 0.00 2.71
49 50 5.779771 ACAACAACAATTCCAGTCCCAATAT 59.220 36.000 0.00 0.00 0.00 1.28
50 51 5.920193 ACAACAATTCCAGTCCCAATATG 57.080 39.130 0.00 0.00 0.00 1.78
66 69 2.484868 TATGGGAGGGGACAGCCACA 62.485 60.000 0.00 0.00 41.39 4.17
75 78 1.669115 GACAGCCACACACGAGCAT 60.669 57.895 0.00 0.00 0.00 3.79
237 256 6.015940 ACAGGAGAAACAAAACATCAGAATCC 60.016 38.462 0.00 0.00 0.00 3.01
285 371 1.314730 GCTTGACCGGGAACTGAAAA 58.685 50.000 6.32 0.00 36.31 2.29
289 375 0.591659 GACCGGGAACTGAAAACTGC 59.408 55.000 6.32 0.00 36.31 4.40
329 415 3.246112 CCTCGTTGACCCACCCCA 61.246 66.667 0.00 0.00 0.00 4.96
330 416 2.032071 CTCGTTGACCCACCCCAC 59.968 66.667 0.00 0.00 0.00 4.61
331 417 3.546714 CTCGTTGACCCACCCCACC 62.547 68.421 0.00 0.00 0.00 4.61
332 418 4.653888 CGTTGACCCACCCCACCC 62.654 72.222 0.00 0.00 0.00 4.61
333 419 4.295199 GTTGACCCACCCCACCCC 62.295 72.222 0.00 0.00 0.00 4.95
334 420 4.865228 TTGACCCACCCCACCCCA 62.865 66.667 0.00 0.00 0.00 4.96
430 784 2.821307 GCAAAGAGCTTCCATTCGAG 57.179 50.000 0.00 0.00 41.15 4.04
431 785 2.350522 GCAAAGAGCTTCCATTCGAGA 58.649 47.619 0.00 0.00 41.15 4.04
432 786 2.941720 GCAAAGAGCTTCCATTCGAGAT 59.058 45.455 0.00 0.00 41.15 2.75
433 787 3.376546 GCAAAGAGCTTCCATTCGAGATT 59.623 43.478 0.00 0.00 41.15 2.40
434 788 4.142513 GCAAAGAGCTTCCATTCGAGATTT 60.143 41.667 0.00 0.00 41.15 2.17
435 789 5.567552 CAAAGAGCTTCCATTCGAGATTTC 58.432 41.667 0.00 0.00 0.00 2.17
516 870 1.063806 CACGATATTAGCTGCGCCTC 58.936 55.000 4.18 0.00 0.00 4.70
555 913 1.486726 CCCACATCTCCCTCCTGTTAC 59.513 57.143 0.00 0.00 0.00 2.50
557 915 2.432510 CCACATCTCCCTCCTGTTACTC 59.567 54.545 0.00 0.00 0.00 2.59
558 916 3.370104 CACATCTCCCTCCTGTTACTCT 58.630 50.000 0.00 0.00 0.00 3.24
559 917 3.383185 CACATCTCCCTCCTGTTACTCTC 59.617 52.174 0.00 0.00 0.00 3.20
560 918 2.830651 TCTCCCTCCTGTTACTCTCC 57.169 55.000 0.00 0.00 0.00 3.71
561 919 1.288335 TCTCCCTCCTGTTACTCTCCC 59.712 57.143 0.00 0.00 0.00 4.30
562 920 1.289530 CTCCCTCCTGTTACTCTCCCT 59.710 57.143 0.00 0.00 0.00 4.20
565 923 2.383855 CCTCCTGTTACTCTCCCTCTG 58.616 57.143 0.00 0.00 0.00 3.35
583 941 2.044252 CCTCTTCCCCGTCTCCGA 60.044 66.667 0.00 0.00 35.63 4.55
654 1017 0.175989 CTGGGTAAGAAGGGAGCGTC 59.824 60.000 0.00 0.00 0.00 5.19
901 1272 1.915141 ATTCCAGCCCACAGTTTCAG 58.085 50.000 0.00 0.00 0.00 3.02
948 1319 0.598680 CGCTGCAGCAGTAGTATCCC 60.599 60.000 36.03 4.51 42.21 3.85
1742 2140 2.082231 CACCTTCCATCAGCTGTTCAG 58.918 52.381 14.67 4.10 0.00 3.02
1936 2337 2.906897 CACCAACGCCACAGCCTT 60.907 61.111 0.00 0.00 34.57 4.35
1937 2338 2.594592 ACCAACGCCACAGCCTTC 60.595 61.111 0.00 0.00 34.57 3.46
1975 2376 4.728772 TGCAGAAAAGAAGAATGGAAGGA 58.271 39.130 0.00 0.00 0.00 3.36
2038 2439 0.898326 TGTCCTGCTTCTAGCCGTGA 60.898 55.000 0.00 0.00 41.51 4.35
2234 2635 0.744414 GCTTATGACCAGCTCGCCAA 60.744 55.000 0.00 0.00 34.15 4.52
2253 2654 4.966787 GCCACCTCGGGGTTTGCA 62.967 66.667 18.67 0.00 44.73 4.08
2310 2711 2.700371 TCTATACCATGGTGTGCTCCAG 59.300 50.000 28.17 14.24 41.05 3.86
2343 2744 0.895530 TGGTCGTGAAGAGGATCACC 59.104 55.000 0.00 0.00 45.51 4.02
2357 2758 1.537814 ATCACCACCCGTGTCGCTAA 61.538 55.000 0.00 0.00 43.51 3.09
2610 3011 2.636830 GCACTGTGCTACCTTCATCAT 58.363 47.619 24.68 0.00 40.96 2.45
2618 3019 5.046663 TGTGCTACCTTCATCATGAGTGTAA 60.047 40.000 0.09 0.00 0.00 2.41
3049 3452 6.374333 TCATATTTCTTTCTGTTGGTACTGGC 59.626 38.462 0.00 0.00 0.00 4.85
3146 3549 6.603201 CCACACACTTAATGGACTGGATATTT 59.397 38.462 0.00 0.00 35.33 1.40
3231 3634 8.627487 TCAATGCGAACAATGTTATTATTTCC 57.373 30.769 0.00 0.00 0.00 3.13
3265 3668 9.921637 TTTATCAACCTTGTTGGACATAATTTC 57.078 29.630 7.08 0.00 39.71 2.17
3295 3698 6.363626 GTCGTGTAGTGGCATCTCATTATTAG 59.636 42.308 0.00 0.00 0.00 1.73
3296 3699 5.119279 CGTGTAGTGGCATCTCATTATTAGC 59.881 44.000 0.00 0.00 0.00 3.09
3725 4128 4.404073 GTGTGATCTCCTGACCAACTATCT 59.596 45.833 0.00 0.00 0.00 1.98
3746 4149 1.338107 TCTCCACACGACCAATCACT 58.662 50.000 0.00 0.00 0.00 3.41
3829 4233 2.009774 ACATTGCCGTCAGTTGCTATC 58.990 47.619 0.00 0.00 0.00 2.08
3880 4284 9.473007 TGAAAAATCATCCTACCACAATATCAA 57.527 29.630 0.00 0.00 0.00 2.57
3961 4366 5.895636 TTTAATACCAACCTGTCATGCAG 57.104 39.130 9.40 9.40 44.63 4.41
4244 4651 3.939740 TGTACCATACTACCTCGTCCT 57.060 47.619 0.00 0.00 0.00 3.85
4257 4664 3.642848 ACCTCGTCCTTTACAAACCTGTA 59.357 43.478 0.00 0.00 36.96 2.74
4285 4692 3.066760 GCCCATTTTGCACCATACTACTC 59.933 47.826 0.00 0.00 0.00 2.59
4304 4711 0.791422 CGGTCCGTTACAAAATCGCA 59.209 50.000 2.08 0.00 0.00 5.10
4305 4712 1.462869 CGGTCCGTTACAAAATCGCAC 60.463 52.381 2.08 0.00 0.00 5.34
4306 4713 1.135888 GGTCCGTTACAAAATCGCACC 60.136 52.381 0.00 0.00 0.00 5.01
4307 4714 1.532007 GTCCGTTACAAAATCGCACCA 59.468 47.619 0.00 0.00 0.00 4.17
4308 4715 2.160813 GTCCGTTACAAAATCGCACCAT 59.839 45.455 0.00 0.00 0.00 3.55
4309 4716 3.371591 GTCCGTTACAAAATCGCACCATA 59.628 43.478 0.00 0.00 0.00 2.74
4310 4717 3.371591 TCCGTTACAAAATCGCACCATAC 59.628 43.478 0.00 0.00 0.00 2.39
4311 4718 3.372822 CCGTTACAAAATCGCACCATACT 59.627 43.478 0.00 0.00 0.00 2.12
4312 4719 4.567558 CCGTTACAAAATCGCACCATACTA 59.432 41.667 0.00 0.00 0.00 1.82
4313 4720 5.486706 CGTTACAAAATCGCACCATACTAC 58.513 41.667 0.00 0.00 0.00 2.73
4314 4721 5.290158 CGTTACAAAATCGCACCATACTACT 59.710 40.000 0.00 0.00 0.00 2.57
4315 4722 6.507456 CGTTACAAAATCGCACCATACTACTC 60.507 42.308 0.00 0.00 0.00 2.59
4316 4723 3.863424 ACAAAATCGCACCATACTACTCG 59.137 43.478 0.00 0.00 0.00 4.18
4317 4724 3.795623 AAATCGCACCATACTACTCGT 57.204 42.857 0.00 0.00 0.00 4.18
4318 4725 3.351020 AATCGCACCATACTACTCGTC 57.649 47.619 0.00 0.00 0.00 4.20
4319 4726 1.019673 TCGCACCATACTACTCGTCC 58.980 55.000 0.00 0.00 0.00 4.79
4320 4727 0.316772 CGCACCATACTACTCGTCCG 60.317 60.000 0.00 0.00 0.00 4.79
4321 4728 0.737219 GCACCATACTACTCGTCCGT 59.263 55.000 0.00 0.00 0.00 4.69
4322 4729 1.133790 GCACCATACTACTCGTCCGTT 59.866 52.381 0.00 0.00 0.00 4.44
4323 4730 2.355756 GCACCATACTACTCGTCCGTTA 59.644 50.000 0.00 0.00 0.00 3.18
4400 4807 8.293157 CACTTATGACTCGAGCTCTCATTATTA 58.707 37.037 18.78 2.38 0.00 0.98
4403 4810 5.822278 TGACTCGAGCTCTCATTATTACAC 58.178 41.667 13.61 0.00 0.00 2.90
4591 4998 3.057526 GGCAACTTAACATGGGTCAAGTC 60.058 47.826 0.00 0.00 31.06 3.01
4600 5007 9.357652 CTTAACATGGGTCAAGTCAAATTATTG 57.642 33.333 0.00 0.00 37.92 1.90
4691 5102 5.324409 TGGATGCCACTTCTGTAGATTTTT 58.676 37.500 0.00 0.00 0.00 1.94
4692 5103 5.183713 TGGATGCCACTTCTGTAGATTTTTG 59.816 40.000 0.00 0.00 0.00 2.44
4694 5105 5.689383 TGCCACTTCTGTAGATTTTTGTC 57.311 39.130 0.00 0.00 0.00 3.18
4696 5107 4.082733 GCCACTTCTGTAGATTTTTGTCCC 60.083 45.833 0.00 0.00 0.00 4.46
4697 5108 5.316987 CCACTTCTGTAGATTTTTGTCCCT 58.683 41.667 0.00 0.00 0.00 4.20
4894 5313 6.906848 TCAGATTAAATTAAATCCCCTCCGT 58.093 36.000 0.00 0.00 36.68 4.69
4994 5414 5.785243 TCATTGATTTGAAGCATTTCAGCA 58.215 33.333 0.00 0.00 43.76 4.41
4998 5418 4.932799 TGATTTGAAGCATTTCAGCATTGG 59.067 37.500 0.00 0.00 43.76 3.16
5033 5460 8.062065 TCTAGTTTAGGCCCATTTTTAACATG 57.938 34.615 0.00 0.00 0.00 3.21
5329 5756 2.160221 GGCAATGGCAATTGTCGCG 61.160 57.895 15.28 0.00 44.34 5.87
5359 5786 4.116238 GCTTGAATCCTAGGTCTTCGAAG 58.884 47.826 19.35 19.35 0.00 3.79
5470 5897 2.158475 AGCAACATCTTCAAGGGGTTCA 60.158 45.455 0.00 0.00 0.00 3.18
5593 6020 1.673168 GAGGGAGCAATGGTGATCAC 58.327 55.000 17.91 17.91 44.28 3.06
5712 6139 4.663334 GATCCTTTGGGTTAACAGAGGTT 58.337 43.478 8.10 3.96 41.95 3.50
5869 6296 1.043673 AGGTGAGCGTATGGAGGTCC 61.044 60.000 0.00 0.00 35.45 4.46
5901 6328 1.750930 CTGGTGCACTGTCTGGACT 59.249 57.895 17.98 0.00 40.97 3.85
5962 6389 5.567037 TTTTCTTCTTCTCCTGGTCATGA 57.433 39.130 0.00 0.00 0.00 3.07
5971 6398 5.620738 TCTCCTGGTCATGATTAAAGAGG 57.379 43.478 0.00 0.00 0.00 3.69
6068 6495 3.967734 CGTTCACCGGCATTTGTAG 57.032 52.632 0.00 0.00 0.00 2.74
6069 6496 1.434555 CGTTCACCGGCATTTGTAGA 58.565 50.000 0.00 0.00 0.00 2.59
6084 6511 8.034804 GGCATTTGTAGATGGTTATTTCTGTTT 58.965 33.333 0.00 0.00 0.00 2.83
6085 6512 8.863049 GCATTTGTAGATGGTTATTTCTGTTTG 58.137 33.333 0.00 0.00 0.00 2.93
6094 6521 6.491394 TGGTTATTTCTGTTTGAGTTTGACG 58.509 36.000 0.00 0.00 0.00 4.35
6122 6549 1.005037 TTCAACGAGGCTCATGCGT 60.005 52.632 15.95 4.02 40.82 5.24
6158 6590 1.959226 GAGAAAACGCCGTGCCAGA 60.959 57.895 0.00 0.00 0.00 3.86
6165 6597 2.594592 GCCGTGCCAGACCAGTTT 60.595 61.111 0.00 0.00 0.00 2.66
6170 6602 1.680338 GTGCCAGACCAGTTTGAAGT 58.320 50.000 0.00 0.00 0.00 3.01
6171 6603 2.805295 CGTGCCAGACCAGTTTGAAGTA 60.805 50.000 0.00 0.00 0.00 2.24
6173 6605 1.798813 GCCAGACCAGTTTGAAGTACG 59.201 52.381 0.00 0.00 0.00 3.67
6219 6651 0.608130 GCTTCCGGAAAAGGCCAAAT 59.392 50.000 19.39 0.00 0.00 2.32
6241 6673 2.292016 CTGCAAATGTCCGTTTGTGGTA 59.708 45.455 12.23 0.00 40.38 3.25
6403 6835 2.276732 AATGCACTGCTTGTACTGGT 57.723 45.000 1.98 0.00 0.00 4.00
6441 6880 6.075762 TCCCTGCATTTTCAAATATCATCG 57.924 37.500 0.00 0.00 0.00 3.84
6443 6882 5.916883 CCCTGCATTTTCAAATATCATCGAC 59.083 40.000 0.00 0.00 0.00 4.20
6451 6890 1.502231 AATATCATCGACACTGCGCC 58.498 50.000 4.18 0.00 0.00 6.53
6452 6891 0.676184 ATATCATCGACACTGCGCCT 59.324 50.000 4.18 0.00 0.00 5.52
6453 6892 0.459899 TATCATCGACACTGCGCCTT 59.540 50.000 4.18 0.00 0.00 4.35
6454 6893 1.086067 ATCATCGACACTGCGCCTTG 61.086 55.000 4.18 4.01 0.00 3.61
6455 6894 2.434884 ATCGACACTGCGCCTTGG 60.435 61.111 4.18 0.00 0.00 3.61
6456 6895 3.958147 ATCGACACTGCGCCTTGGG 62.958 63.158 4.18 0.00 0.00 4.12
6466 6905 3.661648 GCCTTGGGCCCCTCTTCA 61.662 66.667 22.27 0.00 44.06 3.02
6467 6906 3.001358 GCCTTGGGCCCCTCTTCAT 62.001 63.158 22.27 0.00 44.06 2.57
6468 6907 1.076485 CCTTGGGCCCCTCTTCATG 60.076 63.158 22.27 0.88 0.00 3.07
6469 6908 1.076485 CTTGGGCCCCTCTTCATGG 60.076 63.158 22.27 0.00 0.00 3.66
6470 6909 1.543642 TTGGGCCCCTCTTCATGGA 60.544 57.895 22.27 0.00 0.00 3.41
6471 6910 1.574526 TTGGGCCCCTCTTCATGGAG 61.575 60.000 22.27 0.00 0.00 3.86
6472 6911 2.003548 GGGCCCCTCTTCATGGAGT 61.004 63.158 12.23 0.00 0.00 3.85
6473 6912 1.529309 GGCCCCTCTTCATGGAGTC 59.471 63.158 0.00 0.00 0.00 3.36
6474 6913 1.274703 GGCCCCTCTTCATGGAGTCA 61.275 60.000 0.00 0.00 0.00 3.41
6475 6914 0.179936 GCCCCTCTTCATGGAGTCAG 59.820 60.000 0.00 0.00 0.00 3.51
6476 6915 0.179936 CCCCTCTTCATGGAGTCAGC 59.820 60.000 0.00 0.00 0.00 4.26
6477 6916 0.179089 CCCTCTTCATGGAGTCAGCG 60.179 60.000 0.00 0.00 0.00 5.18
6478 6917 0.820226 CCTCTTCATGGAGTCAGCGA 59.180 55.000 0.00 0.00 0.00 4.93
6479 6918 1.411977 CCTCTTCATGGAGTCAGCGAT 59.588 52.381 0.00 0.00 0.00 4.58
6480 6919 2.471818 CTCTTCATGGAGTCAGCGATG 58.528 52.381 0.00 0.00 0.00 3.84
6481 6920 2.100418 CTCTTCATGGAGTCAGCGATGA 59.900 50.000 0.00 0.00 0.00 2.92
6482 6921 2.697229 TCTTCATGGAGTCAGCGATGAT 59.303 45.455 6.66 0.00 0.00 2.45
6483 6922 3.891366 TCTTCATGGAGTCAGCGATGATA 59.109 43.478 6.66 0.00 0.00 2.15
6484 6923 4.525874 TCTTCATGGAGTCAGCGATGATAT 59.474 41.667 6.66 0.00 0.00 1.63
6485 6924 5.711976 TCTTCATGGAGTCAGCGATGATATA 59.288 40.000 6.66 0.00 0.00 0.86
6486 6925 5.982890 TCATGGAGTCAGCGATGATATAA 57.017 39.130 6.66 0.00 0.00 0.98
6487 6926 6.535963 TCATGGAGTCAGCGATGATATAAT 57.464 37.500 6.66 0.00 0.00 1.28
6488 6927 6.335777 TCATGGAGTCAGCGATGATATAATG 58.664 40.000 6.66 9.55 0.00 1.90
6489 6928 4.498241 TGGAGTCAGCGATGATATAATGC 58.502 43.478 6.66 0.00 0.00 3.56
6490 6929 4.021192 TGGAGTCAGCGATGATATAATGCA 60.021 41.667 6.66 0.00 0.00 3.96
6491 6930 4.328440 GGAGTCAGCGATGATATAATGCAC 59.672 45.833 6.66 0.00 0.00 4.57
6492 6931 5.144692 AGTCAGCGATGATATAATGCACT 57.855 39.130 6.66 0.00 0.00 4.40
6493 6932 4.928020 AGTCAGCGATGATATAATGCACTG 59.072 41.667 6.66 0.00 0.00 3.66
6494 6933 3.681417 TCAGCGATGATATAATGCACTGC 59.319 43.478 0.00 0.00 0.00 4.40
6495 6934 3.683340 CAGCGATGATATAATGCACTGCT 59.317 43.478 0.00 0.00 0.00 4.24
6496 6935 4.153655 CAGCGATGATATAATGCACTGCTT 59.846 41.667 0.00 0.00 0.00 3.91
6497 6936 4.153655 AGCGATGATATAATGCACTGCTTG 59.846 41.667 1.98 0.00 0.00 4.01
6498 6937 4.083643 GCGATGATATAATGCACTGCTTGT 60.084 41.667 1.98 0.00 0.00 3.16
6499 6938 5.120674 GCGATGATATAATGCACTGCTTGTA 59.879 40.000 1.98 0.00 0.00 2.41
6500 6939 6.528826 CGATGATATAATGCACTGCTTGTAC 58.471 40.000 1.98 0.00 0.00 2.90
6501 6940 6.367149 CGATGATATAATGCACTGCTTGTACT 59.633 38.462 1.98 0.00 0.00 2.73
6502 6941 6.849588 TGATATAATGCACTGCTTGTACTG 57.150 37.500 1.98 0.00 0.00 2.74
6503 6942 5.759763 TGATATAATGCACTGCTTGTACTGG 59.240 40.000 1.98 0.00 0.00 4.00
6504 6943 2.276732 AATGCACTGCTTGTACTGGT 57.723 45.000 1.98 0.00 0.00 4.00
6505 6944 1.813513 ATGCACTGCTTGTACTGGTC 58.186 50.000 1.98 0.00 0.00 4.02
6506 6945 0.467804 TGCACTGCTTGTACTGGTCA 59.532 50.000 1.98 0.00 0.00 4.02
6507 6946 1.134250 TGCACTGCTTGTACTGGTCAA 60.134 47.619 1.98 0.00 0.00 3.18
6508 6947 1.946768 GCACTGCTTGTACTGGTCAAA 59.053 47.619 0.00 0.00 0.00 2.69
6509 6948 2.031682 GCACTGCTTGTACTGGTCAAAG 60.032 50.000 0.00 0.00 0.00 2.77
6510 6949 3.466836 CACTGCTTGTACTGGTCAAAGA 58.533 45.455 0.00 0.00 0.00 2.52
6511 6950 3.876914 CACTGCTTGTACTGGTCAAAGAA 59.123 43.478 0.00 0.00 0.00 2.52
6512 6951 3.877508 ACTGCTTGTACTGGTCAAAGAAC 59.122 43.478 0.00 0.00 0.00 3.01
6513 6952 3.876914 CTGCTTGTACTGGTCAAAGAACA 59.123 43.478 0.00 0.00 0.00 3.18
6514 6953 4.460263 TGCTTGTACTGGTCAAAGAACAT 58.540 39.130 0.00 0.00 0.00 2.71
6515 6954 4.887071 TGCTTGTACTGGTCAAAGAACATT 59.113 37.500 0.00 0.00 0.00 2.71
6516 6955 5.359576 TGCTTGTACTGGTCAAAGAACATTT 59.640 36.000 0.00 0.00 0.00 2.32
6517 6956 6.127479 TGCTTGTACTGGTCAAAGAACATTTT 60.127 34.615 0.00 0.00 0.00 1.82
6518 6957 6.756542 GCTTGTACTGGTCAAAGAACATTTTT 59.243 34.615 0.00 0.00 0.00 1.94
6541 6980 8.721019 TTTTCCCTGCATTTTCAAATATCATC 57.279 30.769 0.00 0.00 0.00 2.92
6542 6981 6.075762 TCCCTGCATTTTCAAATATCATCG 57.924 37.500 0.00 0.00 0.00 3.84
6543 6982 5.827267 TCCCTGCATTTTCAAATATCATCGA 59.173 36.000 0.00 0.00 0.00 3.59
6544 6983 5.916883 CCCTGCATTTTCAAATATCATCGAC 59.083 40.000 0.00 0.00 0.00 4.20
6545 6984 6.459985 CCCTGCATTTTCAAATATCATCGACA 60.460 38.462 0.00 0.00 0.00 4.35
6546 6985 6.415867 CCTGCATTTTCAAATATCATCGACAC 59.584 38.462 0.00 0.00 0.00 3.67
6547 6986 7.087409 TGCATTTTCAAATATCATCGACACT 57.913 32.000 0.00 0.00 0.00 3.55
6548 6987 6.968335 TGCATTTTCAAATATCATCGACACTG 59.032 34.615 0.00 0.00 0.00 3.66
6549 6988 6.075205 GCATTTTCAAATATCATCGACACTGC 60.075 38.462 0.00 0.00 0.00 4.40
6550 6989 4.777140 TTCAAATATCATCGACACTGCG 57.223 40.909 0.00 0.00 0.00 5.18
6551 6990 2.539688 TCAAATATCATCGACACTGCGC 59.460 45.455 0.00 0.00 0.00 6.09
6554 6993 0.459899 TATCATCGACACTGCGCCTT 59.540 50.000 4.18 0.00 0.00 4.35
6568 7007 3.001358 GCCTTGGGCCCCTCTTCAT 62.001 63.158 22.27 0.00 44.06 2.57
6570 7009 1.076485 CTTGGGCCCCTCTTCATGG 60.076 63.158 22.27 0.00 0.00 3.66
6583 7022 0.617935 TTCATGGGGTCAGCGATGAA 59.382 50.000 4.22 0.00 33.46 2.57
6584 7023 0.178767 TCATGGGGTCAGCGATGAAG 59.821 55.000 4.22 0.00 0.00 3.02
6585 7024 0.107508 CATGGGGTCAGCGATGAAGT 60.108 55.000 4.22 0.00 0.00 3.01
6586 7025 1.138859 CATGGGGTCAGCGATGAAGTA 59.861 52.381 4.22 0.00 0.00 2.24
6587 7026 1.271856 TGGGGTCAGCGATGAAGTAA 58.728 50.000 4.22 0.00 0.00 2.24
6588 7027 1.626321 TGGGGTCAGCGATGAAGTAAA 59.374 47.619 4.22 0.00 0.00 2.01
6589 7028 2.280628 GGGGTCAGCGATGAAGTAAAG 58.719 52.381 4.22 0.00 0.00 1.85
6590 7029 2.354805 GGGGTCAGCGATGAAGTAAAGT 60.355 50.000 4.22 0.00 0.00 2.66
6591 7030 3.118884 GGGGTCAGCGATGAAGTAAAGTA 60.119 47.826 4.22 0.00 0.00 2.24
6592 7031 4.113354 GGGTCAGCGATGAAGTAAAGTAG 58.887 47.826 4.22 0.00 0.00 2.57
6593 7032 4.381718 GGGTCAGCGATGAAGTAAAGTAGT 60.382 45.833 4.22 0.00 0.00 2.73
6594 7033 5.163581 GGGTCAGCGATGAAGTAAAGTAGTA 60.164 44.000 4.22 0.00 0.00 1.82
6595 7034 5.742926 GGTCAGCGATGAAGTAAAGTAGTAC 59.257 44.000 4.22 0.00 0.00 2.73
6596 7035 6.404513 GGTCAGCGATGAAGTAAAGTAGTACT 60.405 42.308 4.22 0.00 35.80 2.73
6597 7036 6.687958 GTCAGCGATGAAGTAAAGTAGTACTC 59.312 42.308 4.22 0.00 33.05 2.59
6598 7037 5.972382 CAGCGATGAAGTAAAGTAGTACTCC 59.028 44.000 2.58 0.00 33.05 3.85
6599 7038 5.067544 AGCGATGAAGTAAAGTAGTACTCCC 59.932 44.000 2.58 0.00 33.05 4.30
6600 7039 5.067544 GCGATGAAGTAAAGTAGTACTCCCT 59.932 44.000 2.58 0.00 33.05 4.20
6601 7040 6.405619 GCGATGAAGTAAAGTAGTACTCCCTT 60.406 42.308 2.58 6.09 33.05 3.95
6602 7041 7.194962 CGATGAAGTAAAGTAGTACTCCCTTC 58.805 42.308 19.67 19.67 33.05 3.46
6603 7042 6.506500 TGAAGTAAAGTAGTACTCCCTTCG 57.493 41.667 20.37 0.00 33.05 3.79
6604 7043 6.006449 TGAAGTAAAGTAGTACTCCCTTCGT 58.994 40.000 20.37 0.00 33.05 3.85
6605 7044 6.491403 TGAAGTAAAGTAGTACTCCCTTCGTT 59.509 38.462 20.37 8.37 33.05 3.85
6606 7045 6.507958 AGTAAAGTAGTACTCCCTTCGTTC 57.492 41.667 2.58 0.00 27.56 3.95
6607 7046 4.797800 AAAGTAGTACTCCCTTCGTTCC 57.202 45.455 2.58 0.00 0.00 3.62
6608 7047 2.363683 AGTAGTACTCCCTTCGTTCCG 58.636 52.381 0.00 0.00 0.00 4.30
6609 7048 2.026822 AGTAGTACTCCCTTCGTTCCGA 60.027 50.000 0.00 0.00 0.00 4.55
6610 7049 1.915141 AGTACTCCCTTCGTTCCGAA 58.085 50.000 0.00 0.00 43.75 4.30
6611 7050 2.454538 AGTACTCCCTTCGTTCCGAAT 58.545 47.619 0.00 0.00 44.85 3.34
6612 7051 2.830321 AGTACTCCCTTCGTTCCGAATT 59.170 45.455 0.00 0.00 44.85 2.17
6613 7052 4.019174 AGTACTCCCTTCGTTCCGAATTA 58.981 43.478 0.00 0.00 44.85 1.40
6614 7053 3.242549 ACTCCCTTCGTTCCGAATTAC 57.757 47.619 0.00 0.00 44.85 1.89
6615 7054 2.830321 ACTCCCTTCGTTCCGAATTACT 59.170 45.455 0.00 0.00 44.85 2.24
6616 7055 3.260128 ACTCCCTTCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 44.85 2.24
6617 7056 3.592059 TCCCTTCGTTCCGAATTACTTG 58.408 45.455 0.00 0.00 44.85 3.16
6618 7057 3.007182 TCCCTTCGTTCCGAATTACTTGT 59.993 43.478 0.00 0.00 44.85 3.16
6619 7058 3.370061 CCCTTCGTTCCGAATTACTTGTC 59.630 47.826 0.00 0.00 44.85 3.18
6620 7059 4.243270 CCTTCGTTCCGAATTACTTGTCT 58.757 43.478 0.00 0.00 44.85 3.41
6621 7060 4.689345 CCTTCGTTCCGAATTACTTGTCTT 59.311 41.667 0.00 0.00 44.85 3.01
6622 7061 5.865552 CCTTCGTTCCGAATTACTTGTCTTA 59.134 40.000 0.00 0.00 44.85 2.10
6623 7062 6.034683 CCTTCGTTCCGAATTACTTGTCTTAG 59.965 42.308 0.00 0.00 44.85 2.18
6624 7063 6.258230 TCGTTCCGAATTACTTGTCTTAGA 57.742 37.500 0.00 0.00 31.06 2.10
6625 7064 6.860080 TCGTTCCGAATTACTTGTCTTAGAT 58.140 36.000 0.00 0.00 31.06 1.98
6626 7065 7.318141 TCGTTCCGAATTACTTGTCTTAGATT 58.682 34.615 0.00 0.00 31.06 2.40
6627 7066 7.816031 TCGTTCCGAATTACTTGTCTTAGATTT 59.184 33.333 0.00 0.00 31.06 2.17
6628 7067 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
6629 7068 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
6630 7069 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
6631 7070 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
6632 7071 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
6639 7078 9.175312 ACTTGTCTTAGATTTGTCTAGATACGA 57.825 33.333 0.00 0.00 0.00 3.43
6642 7081 8.622157 TGTCTTAGATTTGTCTAGATACGAAGG 58.378 37.037 0.00 0.00 0.00 3.46
6643 7082 8.623030 GTCTTAGATTTGTCTAGATACGAAGGT 58.377 37.037 0.00 0.00 0.00 3.50
6644 7083 9.842775 TCTTAGATTTGTCTAGATACGAAGGTA 57.157 33.333 0.00 0.00 0.00 3.08
6660 7099 7.108841 ACGAAGGTATCTAGCACTAAAATGA 57.891 36.000 0.00 0.00 0.00 2.57
6661 7100 7.203910 ACGAAGGTATCTAGCACTAAAATGAG 58.796 38.462 0.00 0.00 0.00 2.90
6662 7101 7.147880 ACGAAGGTATCTAGCACTAAAATGAGT 60.148 37.037 0.00 0.00 0.00 3.41
6663 7102 7.380065 CGAAGGTATCTAGCACTAAAATGAGTC 59.620 40.741 0.00 0.00 0.00 3.36
6664 7103 7.906199 AGGTATCTAGCACTAAAATGAGTCT 57.094 36.000 0.00 0.00 0.00 3.24
6665 7104 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.249120 TGACTAGGACAATGCCCGTG 59.751 55.000 0.00 0.00 0.00 4.94
1 2 0.249398 GTGACTAGGACAATGCCCGT 59.751 55.000 0.00 0.00 0.00 5.28
2 3 0.462047 GGTGACTAGGACAATGCCCG 60.462 60.000 0.00 0.00 0.00 6.13
3 4 0.107165 GGGTGACTAGGACAATGCCC 60.107 60.000 0.00 0.00 0.00 5.36
4 5 0.912486 AGGGTGACTAGGACAATGCC 59.088 55.000 0.00 0.00 0.00 4.40
5 6 3.055385 TGTTAGGGTGACTAGGACAATGC 60.055 47.826 0.00 0.00 32.16 3.56
6 7 4.819105 TGTTAGGGTGACTAGGACAATG 57.181 45.455 0.00 0.00 32.16 2.82
7 8 4.595781 TGTTGTTAGGGTGACTAGGACAAT 59.404 41.667 0.00 0.00 35.79 2.71
8 9 3.968649 TGTTGTTAGGGTGACTAGGACAA 59.031 43.478 0.00 0.00 32.63 3.18
9 10 3.578978 TGTTGTTAGGGTGACTAGGACA 58.421 45.455 0.00 0.00 32.16 4.02
10 11 4.202284 TGTTGTTGTTAGGGTGACTAGGAC 60.202 45.833 0.00 0.00 32.16 3.85
11 12 3.968649 TGTTGTTGTTAGGGTGACTAGGA 59.031 43.478 0.00 0.00 32.16 2.94
12 13 4.345859 TGTTGTTGTTAGGGTGACTAGG 57.654 45.455 0.00 0.00 32.16 3.02
13 14 6.072673 GGAATTGTTGTTGTTAGGGTGACTAG 60.073 42.308 0.00 0.00 32.16 2.57
14 15 5.766174 GGAATTGTTGTTGTTAGGGTGACTA 59.234 40.000 0.00 0.00 0.00 2.59
15 16 4.583073 GGAATTGTTGTTGTTAGGGTGACT 59.417 41.667 0.00 0.00 0.00 3.41
16 17 4.339814 TGGAATTGTTGTTGTTAGGGTGAC 59.660 41.667 0.00 0.00 0.00 3.67
17 18 4.537751 TGGAATTGTTGTTGTTAGGGTGA 58.462 39.130 0.00 0.00 0.00 4.02
18 19 4.340950 ACTGGAATTGTTGTTGTTAGGGTG 59.659 41.667 0.00 0.00 0.00 4.61
19 20 4.542697 ACTGGAATTGTTGTTGTTAGGGT 58.457 39.130 0.00 0.00 0.00 4.34
20 21 4.022329 GGACTGGAATTGTTGTTGTTAGGG 60.022 45.833 0.00 0.00 0.00 3.53
21 22 4.022329 GGGACTGGAATTGTTGTTGTTAGG 60.022 45.833 0.00 0.00 0.00 2.69
22 23 4.582656 TGGGACTGGAATTGTTGTTGTTAG 59.417 41.667 0.00 0.00 0.00 2.34
23 24 4.537751 TGGGACTGGAATTGTTGTTGTTA 58.462 39.130 0.00 0.00 0.00 2.41
24 25 3.370104 TGGGACTGGAATTGTTGTTGTT 58.630 40.909 0.00 0.00 0.00 2.83
25 26 3.025322 TGGGACTGGAATTGTTGTTGT 57.975 42.857 0.00 0.00 0.00 3.32
26 27 4.605640 ATTGGGACTGGAATTGTTGTTG 57.394 40.909 0.00 0.00 0.00 3.33
27 28 5.187576 CCATATTGGGACTGGAATTGTTGTT 59.812 40.000 0.00 0.00 32.67 2.83
28 29 4.711355 CCATATTGGGACTGGAATTGTTGT 59.289 41.667 0.00 0.00 32.67 3.32
49 50 4.590553 TGTGGCTGTCCCCTCCCA 62.591 66.667 0.00 0.00 0.00 4.37
50 51 4.035102 GTGTGGCTGTCCCCTCCC 62.035 72.222 0.00 0.00 0.00 4.30
75 78 3.372730 GATGCAAAGGTGGCGCCA 61.373 61.111 29.03 29.03 40.61 5.69
185 193 4.704833 TGACGCTTGAGGCAGGGC 62.705 66.667 0.00 0.00 41.91 5.19
193 201 1.374125 CCATCGTGGTGACGCTTGA 60.374 57.895 0.00 0.00 45.68 3.02
194 202 1.374125 TCCATCGTGGTGACGCTTG 60.374 57.895 4.33 0.00 45.68 4.01
195 203 1.374252 GTCCATCGTGGTGACGCTT 60.374 57.895 4.33 0.00 45.68 4.68
196 204 2.261671 GTCCATCGTGGTGACGCT 59.738 61.111 4.33 0.00 45.68 5.07
197 205 2.048597 TGTCCATCGTGGTGACGC 60.049 61.111 4.33 0.00 45.68 5.19
199 207 0.108615 CTCCTGTCCATCGTGGTGAC 60.109 60.000 4.33 0.00 39.03 3.67
265 351 0.882927 TTTCAGTTCCCGGTCAAGCG 60.883 55.000 0.00 0.00 0.00 4.68
285 371 1.157870 CGACTGGTTTCGGTTGCAGT 61.158 55.000 0.00 0.00 35.26 4.40
289 375 1.566018 GAGGCGACTGGTTTCGGTTG 61.566 60.000 0.00 0.00 44.43 3.77
359 445 0.537371 CAGGTGGGTTTGGTGAGGTC 60.537 60.000 0.00 0.00 0.00 3.85
427 781 1.299468 CTCCGGGCTCGAAATCTCG 60.299 63.158 8.08 0.00 46.87 4.04
428 782 1.068250 CCTCCGGGCTCGAAATCTC 59.932 63.158 8.08 0.00 39.00 2.75
429 783 1.381327 TCCTCCGGGCTCGAAATCT 60.381 57.895 8.08 0.00 39.00 2.40
430 784 1.068250 CTCCTCCGGGCTCGAAATC 59.932 63.158 8.08 0.00 39.00 2.17
431 785 2.435693 CCTCCTCCGGGCTCGAAAT 61.436 63.158 8.08 0.00 39.00 2.17
432 786 3.075005 CCTCCTCCGGGCTCGAAA 61.075 66.667 8.08 0.00 39.00 3.46
433 787 2.873557 ATTCCTCCTCCGGGCTCGAA 62.874 60.000 8.08 0.00 39.00 3.71
434 788 2.873557 AATTCCTCCTCCGGGCTCGA 62.874 60.000 8.08 0.00 39.00 4.04
435 789 2.370647 GAATTCCTCCTCCGGGCTCG 62.371 65.000 0.00 0.00 0.00 5.03
516 870 3.174265 GGGGCAGATGGGAGAGGG 61.174 72.222 0.00 0.00 0.00 4.30
538 892 3.628769 GGAGAGTAACAGGAGGGAGATGT 60.629 52.174 0.00 0.00 0.00 3.06
555 913 1.048160 GGGAAGAGGCAGAGGGAGAG 61.048 65.000 0.00 0.00 0.00 3.20
557 915 2.069430 GGGGAAGAGGCAGAGGGAG 61.069 68.421 0.00 0.00 0.00 4.30
558 916 2.041265 GGGGAAGAGGCAGAGGGA 59.959 66.667 0.00 0.00 0.00 4.20
559 917 3.474570 CGGGGAAGAGGCAGAGGG 61.475 72.222 0.00 0.00 0.00 4.30
560 918 2.685380 ACGGGGAAGAGGCAGAGG 60.685 66.667 0.00 0.00 0.00 3.69
561 919 1.671901 GAGACGGGGAAGAGGCAGAG 61.672 65.000 0.00 0.00 0.00 3.35
562 920 1.682684 GAGACGGGGAAGAGGCAGA 60.683 63.158 0.00 0.00 0.00 4.26
640 1003 1.640917 AACCAGACGCTCCCTTCTTA 58.359 50.000 0.00 0.00 0.00 2.10
654 1017 3.788766 CGCCGAGCCGAAAACCAG 61.789 66.667 0.00 0.00 0.00 4.00
699 1067 3.077556 CTCCACCTCACCTCCCCG 61.078 72.222 0.00 0.00 0.00 5.73
879 1250 1.273327 GAAACTGTGGGCTGGAATTGG 59.727 52.381 0.00 0.00 0.00 3.16
934 1305 0.747255 ACGCTGGGATACTACTGCTG 59.253 55.000 0.00 0.00 0.00 4.41
985 1356 1.690219 ATCATCACCACCCGCTCCTC 61.690 60.000 0.00 0.00 0.00 3.71
986 1357 1.690633 ATCATCACCACCCGCTCCT 60.691 57.895 0.00 0.00 0.00 3.69
1374 1772 2.283676 AGGTCGAGAGCCCGGAAA 60.284 61.111 0.73 0.00 0.00 3.13
1383 1781 2.438614 CAGGCGGAGAGGTCGAGA 60.439 66.667 0.00 0.00 0.00 4.04
1444 1842 2.034221 GAGGGTGGTGAGGTTGCC 59.966 66.667 0.00 0.00 0.00 4.52
1527 1925 1.613630 GGAGAGGTTGAGAGCCCCA 60.614 63.158 0.00 0.00 0.00 4.96
1531 1929 2.172483 TTGCCGGAGAGGTTGAGAGC 62.172 60.000 5.05 0.00 43.70 4.09
2038 2439 1.402720 GCAATACACAACGGCTGCAAT 60.403 47.619 0.50 0.00 0.00 3.56
2253 2654 4.286549 CCATGCTTGATAATCCTCTCCTCT 59.713 45.833 0.22 0.00 0.00 3.69
2343 2744 1.068474 CTTTCTTAGCGACACGGGTG 58.932 55.000 0.00 0.00 0.00 4.61
2372 2773 5.712217 TGCAAATAAATCTAACTCCGTCG 57.288 39.130 0.00 0.00 0.00 5.12
2869 3271 3.632145 CCCATTTTGCACCATACTACTCC 59.368 47.826 0.00 0.00 0.00 3.85
2870 3272 3.066760 GCCCATTTTGCACCATACTACTC 59.933 47.826 0.00 0.00 0.00 2.59
2871 3273 3.023832 GCCCATTTTGCACCATACTACT 58.976 45.455 0.00 0.00 0.00 2.57
3177 3580 2.871096 ATTCGGGCAAAGTACAGGAA 57.129 45.000 0.00 0.00 0.00 3.36
3186 3589 7.579726 CATTGAATTTTTGTTATTCGGGCAAA 58.420 30.769 0.00 0.00 35.29 3.68
3231 3634 9.573133 GTCCAACAAGGTTGATAAATAATGAAG 57.427 33.333 10.48 0.00 39.02 3.02
3265 3668 2.809601 GCCACTACACGACAGCGG 60.810 66.667 0.00 0.00 43.17 5.52
3725 4128 3.096852 AGTGATTGGTCGTGTGGAGATA 58.903 45.455 0.00 0.00 0.00 1.98
3829 4233 8.943925 CAACAGTTTAATACAAGAAACTTGTCG 58.056 33.333 18.24 5.33 41.93 4.35
3957 4362 6.550938 TTTCTCTCAGGATCTTATTCTGCA 57.449 37.500 0.00 0.00 0.00 4.41
3961 4366 9.855021 GCTAGTATTTCTCTCAGGATCTTATTC 57.145 37.037 0.00 0.00 0.00 1.75
3971 4376 5.748152 GCTCAACAGCTAGTATTTCTCTCAG 59.252 44.000 0.00 0.00 43.09 3.35
4257 4664 2.941480 TGGTGCAAAATGGGCATTTTT 58.059 38.095 0.00 0.00 45.67 1.94
4285 4692 0.791422 TGCGATTTTGTAACGGACCG 59.209 50.000 13.61 13.61 0.00 4.79
4304 4711 3.609853 TGTAACGGACGAGTAGTATGGT 58.390 45.455 0.00 0.00 0.00 3.55
4305 4712 4.595116 CTTGTAACGGACGAGTAGTATGG 58.405 47.826 0.00 0.00 35.09 2.74
4306 4713 4.033684 GCTTGTAACGGACGAGTAGTATG 58.966 47.826 0.00 0.00 41.23 2.39
4307 4714 3.065925 GGCTTGTAACGGACGAGTAGTAT 59.934 47.826 0.00 0.00 41.23 2.12
4308 4715 2.420022 GGCTTGTAACGGACGAGTAGTA 59.580 50.000 0.00 0.00 41.23 1.82
4309 4716 1.200948 GGCTTGTAACGGACGAGTAGT 59.799 52.381 0.00 0.00 41.23 2.73
4310 4717 1.471684 AGGCTTGTAACGGACGAGTAG 59.528 52.381 0.00 0.00 41.23 2.57
4311 4718 1.200716 CAGGCTTGTAACGGACGAGTA 59.799 52.381 0.00 0.00 41.23 2.59
4312 4719 0.038526 CAGGCTTGTAACGGACGAGT 60.039 55.000 0.00 0.00 41.23 4.18
4313 4720 0.038526 ACAGGCTTGTAACGGACGAG 60.039 55.000 0.00 3.22 41.99 4.18
4314 4721 1.246649 TACAGGCTTGTAACGGACGA 58.753 50.000 6.16 0.00 36.86 4.20
4315 4722 2.068837 TTACAGGCTTGTAACGGACG 57.931 50.000 16.68 0.00 43.12 4.79
4316 4723 6.483687 CATAATTTACAGGCTTGTAACGGAC 58.516 40.000 19.88 0.00 46.53 4.79
4317 4724 5.065474 GCATAATTTACAGGCTTGTAACGGA 59.935 40.000 19.88 7.41 46.53 4.69
4318 4725 5.065988 AGCATAATTTACAGGCTTGTAACGG 59.934 40.000 19.88 9.57 46.53 4.44
4319 4726 6.119144 AGCATAATTTACAGGCTTGTAACG 57.881 37.500 19.88 8.42 46.53 3.18
4320 4727 8.757164 AAAAGCATAATTTACAGGCTTGTAAC 57.243 30.769 19.88 8.48 46.53 2.50
4323 4730 9.771534 TTTAAAAAGCATAATTTACAGGCTTGT 57.228 25.926 6.72 6.72 43.43 3.16
4400 4807 5.266788 ACATGATCAATTGAAGATGGGTGT 58.733 37.500 23.70 14.80 0.00 4.16
4403 4810 4.280174 GGGACATGATCAATTGAAGATGGG 59.720 45.833 23.70 11.82 0.00 4.00
4691 5102 0.764369 AGTGGCAAGAGTGAGGGACA 60.764 55.000 0.00 0.00 0.00 4.02
4692 5103 0.036858 GAGTGGCAAGAGTGAGGGAC 60.037 60.000 0.00 0.00 0.00 4.46
4694 5105 0.321122 GTGAGTGGCAAGAGTGAGGG 60.321 60.000 0.00 0.00 0.00 4.30
4696 5107 1.342496 TCAGTGAGTGGCAAGAGTGAG 59.658 52.381 0.00 0.00 0.00 3.51
4697 5108 1.342496 CTCAGTGAGTGGCAAGAGTGA 59.658 52.381 12.28 0.00 0.00 3.41
4871 5290 7.068226 ACAACGGAGGGGATTTAATTTAATCTG 59.932 37.037 14.85 7.04 35.37 2.90
4894 5313 6.973474 CCCAGAAAACAATACAACGTTAACAA 59.027 34.615 0.00 0.00 0.00 2.83
4994 5414 6.717084 GCCTAAACTAGAGGATAATTGCCAAT 59.283 38.462 0.00 0.00 35.99 3.16
4998 5418 5.004448 GGGCCTAAACTAGAGGATAATTGC 58.996 45.833 0.84 0.00 35.99 3.56
5033 5460 6.541641 TGCAACCATGAAAAATATTTATGGGC 59.458 34.615 23.36 19.34 41.96 5.36
5329 5756 4.837972 ACCTAGGATTCAAGCAAGACTTC 58.162 43.478 17.98 0.00 36.04 3.01
5359 5786 3.119495 GGATATATTTCATTGGTGGCCGC 60.119 47.826 8.12 8.12 0.00 6.53
5712 6139 0.395686 AGCAGAGCTTCAACAGAGCA 59.604 50.000 0.00 0.00 42.56 4.26
5869 6296 0.179084 CACCAGGCAGGGTATACACG 60.179 60.000 5.01 0.00 43.89 4.49
5901 6328 1.685765 AGAGCCACTCCACGCCATA 60.686 57.895 0.00 0.00 0.00 2.74
5944 6371 7.334090 TCTTTAATCATGACCAGGAGAAGAAG 58.666 38.462 0.00 0.00 0.00 2.85
5945 6372 7.257790 TCTTTAATCATGACCAGGAGAAGAA 57.742 36.000 0.00 0.00 0.00 2.52
5946 6373 6.126940 CCTCTTTAATCATGACCAGGAGAAGA 60.127 42.308 0.00 1.00 0.00 2.87
5947 6374 6.054295 CCTCTTTAATCATGACCAGGAGAAG 58.946 44.000 0.00 0.00 0.00 2.85
5962 6389 5.734720 TCAGCTCGACATTTCCTCTTTAAT 58.265 37.500 0.00 0.00 0.00 1.40
5971 6398 6.606768 AGAAAAAGAATCAGCTCGACATTTC 58.393 36.000 0.00 0.00 0.00 2.17
6051 6478 2.097466 CCATCTACAAATGCCGGTGAAC 59.903 50.000 1.90 0.00 0.00 3.18
6053 6480 1.280710 ACCATCTACAAATGCCGGTGA 59.719 47.619 1.90 0.00 0.00 4.02
6055 6482 2.507407 AACCATCTACAAATGCCGGT 57.493 45.000 1.90 0.00 0.00 5.28
6056 6483 5.299279 AGAAATAACCATCTACAAATGCCGG 59.701 40.000 0.00 0.00 0.00 6.13
6062 6489 9.349713 ACTCAAACAGAAATAACCATCTACAAA 57.650 29.630 0.00 0.00 0.00 2.83
6063 6490 8.918202 ACTCAAACAGAAATAACCATCTACAA 57.082 30.769 0.00 0.00 0.00 2.41
6064 6491 8.918202 AACTCAAACAGAAATAACCATCTACA 57.082 30.769 0.00 0.00 0.00 2.74
6065 6492 9.612620 CAAACTCAAACAGAAATAACCATCTAC 57.387 33.333 0.00 0.00 0.00 2.59
6066 6493 9.567776 TCAAACTCAAACAGAAATAACCATCTA 57.432 29.630 0.00 0.00 0.00 1.98
6067 6494 8.352942 GTCAAACTCAAACAGAAATAACCATCT 58.647 33.333 0.00 0.00 0.00 2.90
6068 6495 7.323656 CGTCAAACTCAAACAGAAATAACCATC 59.676 37.037 0.00 0.00 0.00 3.51
6069 6496 7.138736 CGTCAAACTCAAACAGAAATAACCAT 58.861 34.615 0.00 0.00 0.00 3.55
6084 6511 1.764134 ACTACAACCCCGTCAAACTCA 59.236 47.619 0.00 0.00 0.00 3.41
6085 6512 2.538512 ACTACAACCCCGTCAAACTC 57.461 50.000 0.00 0.00 0.00 3.01
6110 6537 1.089920 AATGACAACGCATGAGCCTC 58.910 50.000 0.00 0.00 37.52 4.70
6136 6563 1.627550 GGCACGGCGTTTTCTCTCTC 61.628 60.000 11.19 0.00 0.00 3.20
6137 6564 1.668151 GGCACGGCGTTTTCTCTCT 60.668 57.895 11.19 0.00 0.00 3.10
6148 6580 2.594592 AAACTGGTCTGGCACGGC 60.595 61.111 0.00 0.00 32.53 5.68
6158 6590 4.411256 TTTCTCCGTACTTCAAACTGGT 57.589 40.909 0.00 0.00 0.00 4.00
6165 6597 1.695242 TGGCCTTTTCTCCGTACTTCA 59.305 47.619 3.32 0.00 0.00 3.02
6170 6602 3.254657 CACAATTTGGCCTTTTCTCCGTA 59.745 43.478 3.32 0.00 0.00 4.02
6171 6603 2.035832 CACAATTTGGCCTTTTCTCCGT 59.964 45.455 3.32 0.00 0.00 4.69
6173 6605 4.248058 CATCACAATTTGGCCTTTTCTCC 58.752 43.478 3.32 0.00 0.00 3.71
6200 6632 0.608130 ATTTGGCCTTTTCCGGAAGC 59.392 50.000 17.97 17.11 0.00 3.86
6203 6635 1.544724 CAGATTTGGCCTTTTCCGGA 58.455 50.000 0.00 0.00 0.00 5.14
6219 6651 1.336440 CCACAAACGGACATTTGCAGA 59.664 47.619 0.00 0.00 42.29 4.26
6382 6814 3.941483 GACCAGTACAAGCAGTGCATTAT 59.059 43.478 19.20 2.02 35.00 1.28
6383 6815 3.244387 TGACCAGTACAAGCAGTGCATTA 60.244 43.478 19.20 1.89 35.00 1.90
6384 6816 2.154462 GACCAGTACAAGCAGTGCATT 58.846 47.619 19.20 5.94 35.00 3.56
6392 6824 5.438761 AATGTTCTTTGACCAGTACAAGC 57.561 39.130 0.00 0.00 29.03 4.01
6419 6851 5.916883 GTCGATGATATTTGAAAATGCAGGG 59.083 40.000 0.00 0.00 0.00 4.45
6420 6852 6.415867 GTGTCGATGATATTTGAAAATGCAGG 59.584 38.462 0.00 0.00 0.00 4.85
6451 6890 1.076485 CCATGAAGAGGGGCCCAAG 60.076 63.158 27.72 5.63 0.00 3.61
6452 6891 1.543642 TCCATGAAGAGGGGCCCAA 60.544 57.895 27.72 4.72 0.00 4.12
6453 6892 2.002977 CTCCATGAAGAGGGGCCCA 61.003 63.158 27.72 2.92 0.00 5.36
6454 6893 1.988982 GACTCCATGAAGAGGGGCCC 61.989 65.000 17.12 17.12 38.26 5.80
6455 6894 1.274703 TGACTCCATGAAGAGGGGCC 61.275 60.000 0.00 0.00 38.26 5.80
6456 6895 0.179936 CTGACTCCATGAAGAGGGGC 59.820 60.000 0.00 0.00 38.26 5.80
6457 6896 0.179936 GCTGACTCCATGAAGAGGGG 59.820 60.000 0.00 0.00 38.26 4.79
6458 6897 0.179089 CGCTGACTCCATGAAGAGGG 60.179 60.000 0.00 0.00 38.26 4.30
6459 6898 0.820226 TCGCTGACTCCATGAAGAGG 59.180 55.000 0.00 0.00 38.26 3.69
6460 6899 2.100418 TCATCGCTGACTCCATGAAGAG 59.900 50.000 0.00 0.00 39.91 2.85
6461 6900 2.102578 TCATCGCTGACTCCATGAAGA 58.897 47.619 0.00 0.00 0.00 2.87
6462 6901 2.591571 TCATCGCTGACTCCATGAAG 57.408 50.000 0.00 0.00 0.00 3.02
6463 6902 4.879197 ATATCATCGCTGACTCCATGAA 57.121 40.909 0.00 0.00 33.22 2.57
6464 6903 5.982890 TTATATCATCGCTGACTCCATGA 57.017 39.130 0.00 0.00 33.22 3.07
6465 6904 5.006455 GCATTATATCATCGCTGACTCCATG 59.994 44.000 0.00 0.00 33.22 3.66
6466 6905 5.114780 GCATTATATCATCGCTGACTCCAT 58.885 41.667 0.00 0.00 33.22 3.41
6467 6906 4.021192 TGCATTATATCATCGCTGACTCCA 60.021 41.667 0.00 0.00 33.22 3.86
6468 6907 4.328440 GTGCATTATATCATCGCTGACTCC 59.672 45.833 0.00 0.00 33.22 3.85
6469 6908 5.061933 CAGTGCATTATATCATCGCTGACTC 59.938 44.000 0.00 0.00 37.44 3.36
6470 6909 4.928020 CAGTGCATTATATCATCGCTGACT 59.072 41.667 0.00 0.00 37.44 3.41
6471 6910 4.435253 GCAGTGCATTATATCATCGCTGAC 60.435 45.833 11.09 0.00 37.44 3.51
6472 6911 3.681417 GCAGTGCATTATATCATCGCTGA 59.319 43.478 11.09 0.00 37.44 4.26
6473 6912 3.683340 AGCAGTGCATTATATCATCGCTG 59.317 43.478 19.20 0.00 38.06 5.18
6474 6913 3.935315 AGCAGTGCATTATATCATCGCT 58.065 40.909 19.20 0.00 0.00 4.93
6475 6914 4.083643 ACAAGCAGTGCATTATATCATCGC 60.084 41.667 19.20 0.00 0.00 4.58
6476 6915 5.602458 ACAAGCAGTGCATTATATCATCG 57.398 39.130 19.20 0.00 0.00 3.84
6477 6916 7.360691 CCAGTACAAGCAGTGCATTATATCATC 60.361 40.741 19.20 0.00 35.00 2.92
6478 6917 6.429078 CCAGTACAAGCAGTGCATTATATCAT 59.571 38.462 19.20 0.00 35.00 2.45
6479 6918 5.759763 CCAGTACAAGCAGTGCATTATATCA 59.240 40.000 19.20 0.00 35.00 2.15
6480 6919 5.760253 ACCAGTACAAGCAGTGCATTATATC 59.240 40.000 19.20 1.48 35.00 1.63
6481 6920 5.684704 ACCAGTACAAGCAGTGCATTATAT 58.315 37.500 19.20 0.00 35.00 0.86
6482 6921 5.097742 ACCAGTACAAGCAGTGCATTATA 57.902 39.130 19.20 0.97 35.00 0.98
6483 6922 3.941483 GACCAGTACAAGCAGTGCATTAT 59.059 43.478 19.20 2.02 35.00 1.28
6484 6923 3.244387 TGACCAGTACAAGCAGTGCATTA 60.244 43.478 19.20 1.89 35.00 1.90
6485 6924 2.154462 GACCAGTACAAGCAGTGCATT 58.846 47.619 19.20 5.94 35.00 3.56
6486 6925 1.072173 TGACCAGTACAAGCAGTGCAT 59.928 47.619 19.20 1.20 35.00 3.96
6487 6926 0.467804 TGACCAGTACAAGCAGTGCA 59.532 50.000 19.20 0.00 35.00 4.57
6488 6927 1.593196 TTGACCAGTACAAGCAGTGC 58.407 50.000 7.13 7.13 0.00 4.40
6489 6928 3.466836 TCTTTGACCAGTACAAGCAGTG 58.533 45.455 0.00 0.00 0.00 3.66
6490 6929 3.838244 TCTTTGACCAGTACAAGCAGT 57.162 42.857 0.00 0.00 0.00 4.40
6491 6930 3.876914 TGTTCTTTGACCAGTACAAGCAG 59.123 43.478 0.00 0.00 0.00 4.24
6492 6931 3.879998 TGTTCTTTGACCAGTACAAGCA 58.120 40.909 0.00 0.00 0.00 3.91
6493 6932 5.438761 AATGTTCTTTGACCAGTACAAGC 57.561 39.130 0.00 0.00 29.03 4.01
6515 6954 9.165035 GATGATATTTGAAAATGCAGGGAAAAA 57.835 29.630 0.00 0.00 0.00 1.94
6516 6955 7.492020 CGATGATATTTGAAAATGCAGGGAAAA 59.508 33.333 0.00 0.00 0.00 2.29
6517 6956 6.979817 CGATGATATTTGAAAATGCAGGGAAA 59.020 34.615 0.00 0.00 0.00 3.13
6518 6957 6.320926 TCGATGATATTTGAAAATGCAGGGAA 59.679 34.615 0.00 0.00 0.00 3.97
6519 6958 5.827267 TCGATGATATTTGAAAATGCAGGGA 59.173 36.000 0.00 0.00 0.00 4.20
6520 6959 5.916883 GTCGATGATATTTGAAAATGCAGGG 59.083 40.000 0.00 0.00 0.00 4.45
6521 6960 6.415867 GTGTCGATGATATTTGAAAATGCAGG 59.584 38.462 0.00 0.00 0.00 4.85
6522 6961 7.165318 CAGTGTCGATGATATTTGAAAATGCAG 59.835 37.037 0.00 0.00 0.00 4.41
6523 6962 6.968335 CAGTGTCGATGATATTTGAAAATGCA 59.032 34.615 0.00 0.00 0.00 3.96
6524 6963 6.075205 GCAGTGTCGATGATATTTGAAAATGC 60.075 38.462 0.00 0.00 33.27 3.56
6525 6964 6.139638 CGCAGTGTCGATGATATTTGAAAATG 59.860 38.462 0.00 0.00 0.00 2.32
6526 6965 6.194463 CGCAGTGTCGATGATATTTGAAAAT 58.806 36.000 0.00 0.00 0.00 1.82
6527 6966 5.559227 CGCAGTGTCGATGATATTTGAAAA 58.441 37.500 0.00 0.00 0.00 2.29
6528 6967 4.494035 GCGCAGTGTCGATGATATTTGAAA 60.494 41.667 0.30 0.00 0.00 2.69
6529 6968 3.001228 GCGCAGTGTCGATGATATTTGAA 59.999 43.478 0.30 0.00 0.00 2.69
6530 6969 2.539688 GCGCAGTGTCGATGATATTTGA 59.460 45.455 0.30 0.00 0.00 2.69
6531 6970 2.348872 GGCGCAGTGTCGATGATATTTG 60.349 50.000 10.83 0.00 0.00 2.32
6532 6971 1.867233 GGCGCAGTGTCGATGATATTT 59.133 47.619 10.83 0.00 0.00 1.40
6533 6972 1.069204 AGGCGCAGTGTCGATGATATT 59.931 47.619 10.83 0.00 0.00 1.28
6534 6973 0.676184 AGGCGCAGTGTCGATGATAT 59.324 50.000 10.83 0.00 0.00 1.63
6535 6974 0.459899 AAGGCGCAGTGTCGATGATA 59.540 50.000 10.83 0.00 0.00 2.15
6536 6975 1.086067 CAAGGCGCAGTGTCGATGAT 61.086 55.000 10.83 0.00 0.00 2.45
6537 6976 1.737735 CAAGGCGCAGTGTCGATGA 60.738 57.895 10.83 0.00 0.00 2.92
6538 6977 2.743752 CCAAGGCGCAGTGTCGATG 61.744 63.158 10.83 6.17 0.00 3.84
6539 6978 2.434884 CCAAGGCGCAGTGTCGAT 60.435 61.111 10.83 0.00 0.00 3.59
6540 6979 4.680237 CCCAAGGCGCAGTGTCGA 62.680 66.667 10.83 0.00 0.00 4.20
6551 6990 1.076485 CATGAAGAGGGGCCCAAGG 60.076 63.158 27.72 2.18 0.00 3.61
6554 6993 3.023116 CCCATGAAGAGGGGCCCA 61.023 66.667 27.72 2.92 42.90 5.36
6568 7007 1.271856 TTACTTCATCGCTGACCCCA 58.728 50.000 0.00 0.00 0.00 4.96
6570 7009 2.973945 ACTTTACTTCATCGCTGACCC 58.026 47.619 0.00 0.00 0.00 4.46
6583 7022 5.417266 GGAACGAAGGGAGTACTACTTTACT 59.583 44.000 1.79 0.00 34.86 2.24
6584 7023 5.645624 GGAACGAAGGGAGTACTACTTTAC 58.354 45.833 1.79 0.00 0.00 2.01
6585 7024 5.904362 GGAACGAAGGGAGTACTACTTTA 57.096 43.478 1.79 0.00 0.00 1.85
6586 7025 4.797800 GGAACGAAGGGAGTACTACTTT 57.202 45.455 1.30 1.30 0.00 2.66
6603 7042 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
6604 7043 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
6605 7044 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
6606 7045 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
6613 7052 9.175312 TCGTATCTAGACAAATCTAAGACAAGT 57.825 33.333 0.00 0.00 36.98 3.16
6616 7055 8.622157 CCTTCGTATCTAGACAAATCTAAGACA 58.378 37.037 0.00 0.00 36.98 3.41
6617 7056 8.623030 ACCTTCGTATCTAGACAAATCTAAGAC 58.377 37.037 0.00 0.00 36.98 3.01
6618 7057 8.749026 ACCTTCGTATCTAGACAAATCTAAGA 57.251 34.615 0.00 0.00 36.98 2.10
6634 7073 8.857098 TCATTTTAGTGCTAGATACCTTCGTAT 58.143 33.333 0.00 0.00 37.92 3.06
6635 7074 8.229253 TCATTTTAGTGCTAGATACCTTCGTA 57.771 34.615 0.00 0.00 0.00 3.43
6636 7075 7.108841 TCATTTTAGTGCTAGATACCTTCGT 57.891 36.000 0.00 0.00 0.00 3.85
6637 7076 7.203910 ACTCATTTTAGTGCTAGATACCTTCG 58.796 38.462 0.00 0.00 0.00 3.79
6638 7077 8.417884 AGACTCATTTTAGTGCTAGATACCTTC 58.582 37.037 0.00 0.00 0.00 3.46
6639 7078 8.312669 AGACTCATTTTAGTGCTAGATACCTT 57.687 34.615 0.00 0.00 0.00 3.50
6640 7079 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.