Multiple sequence alignment - TraesCS4A01G258800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G258800 chr4A 100.000 5218 0 0 1 5218 571358780 571363997 0.000000e+00 9636.0
1 TraesCS4A01G258800 chr4A 99.018 5091 39 3 134 5213 588583971 588589061 0.000000e+00 9114.0
2 TraesCS4A01G258800 chr4A 100.000 1021 0 0 5477 6497 571364256 571365276 0.000000e+00 1886.0
3 TraesCS4A01G258800 chr4A 88.443 1445 158 6 720 2159 588633334 588634774 0.000000e+00 1735.0
4 TraesCS4A01G258800 chr4A 87.107 1303 115 22 2287 3544 588643404 588644698 0.000000e+00 1426.0
5 TraesCS4A01G258800 chr4A 98.352 728 3 2 5477 6204 588589210 588589928 0.000000e+00 1269.0
6 TraesCS4A01G258800 chr4A 91.404 698 45 8 3546 4234 588653812 588654503 0.000000e+00 942.0
7 TraesCS4A01G258800 chr4A 87.391 571 58 11 4605 5165 588656627 588657193 1.530000e-180 643.0
8 TraesCS4A01G258800 chr4A 95.455 308 13 1 6191 6497 588589948 588590255 2.110000e-134 490.0
9 TraesCS4A01G258800 chr4A 83.729 295 23 12 5575 5858 588657493 588657773 8.360000e-64 255.0
10 TraesCS4A01G258800 chr4A 96.875 128 4 0 4235 4362 424970867 424970740 1.420000e-51 215.0
11 TraesCS4A01G258800 chr4A 91.935 124 10 0 5481 5604 588657362 588657485 2.410000e-39 174.0
12 TraesCS4A01G258800 chr4D 97.327 2993 70 5 670 3656 13363067 13360079 0.000000e+00 5075.0
13 TraesCS4A01G258800 chr4D 88.894 2260 202 21 4 2245 13353331 13351103 0.000000e+00 2737.0
14 TraesCS4A01G258800 chr4D 97.372 1446 30 5 3654 5096 13359918 13358478 0.000000e+00 2453.0
15 TraesCS4A01G258800 chr4D 89.324 1021 67 19 3245 4234 13349990 13348981 0.000000e+00 1243.0
16 TraesCS4A01G258800 chr4D 92.491 799 39 14 4 785 13363790 13362996 0.000000e+00 1123.0
17 TraesCS4A01G258800 chr4D 78.563 1740 299 38 952 2647 12368690 12370399 0.000000e+00 1079.0
18 TraesCS4A01G258800 chr4D 87.282 975 82 14 2290 3246 13351008 13350058 0.000000e+00 1075.0
19 TraesCS4A01G258800 chr4D 93.728 558 16 4 5477 6020 13357912 13357360 0.000000e+00 819.0
20 TraesCS4A01G258800 chr4D 89.792 529 44 8 4605 5128 13346895 13346372 0.000000e+00 669.0
21 TraesCS4A01G258800 chr4D 90.132 304 21 4 6137 6431 13343978 13343675 2.840000e-103 387.0
22 TraesCS4A01G258800 chr4D 91.342 231 17 2 4353 4580 13348993 13348763 4.890000e-81 313.0
23 TraesCS4A01G258800 chr4D 91.935 124 10 0 5481 5604 13345722 13345599 2.410000e-39 174.0
24 TraesCS4A01G258800 chr4D 91.818 110 6 2 6016 6125 13344514 13344408 4.060000e-32 150.0
25 TraesCS4A01G258800 chr4D 92.941 85 3 3 6370 6452 21890420 21890503 3.180000e-23 121.0
26 TraesCS4A01G258800 chr7A 90.174 2015 178 13 236 2246 141893354 141895352 0.000000e+00 2606.0
27 TraesCS4A01G258800 chr7A 89.225 2014 178 19 236 2245 141302616 141304594 0.000000e+00 2481.0
28 TraesCS4A01G258800 chr7A 89.195 1999 150 26 2287 4234 140761003 140762986 0.000000e+00 2435.0
29 TraesCS4A01G258800 chr7A 89.095 1999 151 27 2287 4234 141049895 141051877 0.000000e+00 2422.0
30 TraesCS4A01G258800 chr7A 88.944 1999 155 26 2287 4234 141304686 141306669 0.000000e+00 2407.0
31 TraesCS4A01G258800 chr7A 90.753 1806 151 11 236 2035 141642632 141644427 0.000000e+00 2396.0
32 TraesCS4A01G258800 chr7A 89.280 1875 139 23 2411 4234 141644793 141646656 0.000000e+00 2292.0
33 TraesCS4A01G258800 chr7A 88.737 1536 160 9 717 2245 140759382 140760911 0.000000e+00 1866.0
34 TraesCS4A01G258800 chr7A 88.827 1432 108 19 2287 3675 141895443 141896865 0.000000e+00 1711.0
35 TraesCS4A01G258800 chr7A 94.845 485 17 6 236 717 141047581 141048060 0.000000e+00 750.0
36 TraesCS4A01G258800 chr7A 95.794 428 13 4 236 661 140758432 140758856 0.000000e+00 686.0
37 TraesCS4A01G258800 chr7A 87.587 572 55 13 4605 5165 141054093 141054659 0.000000e+00 649.0
38 TraesCS4A01G258800 chr7A 87.587 572 55 12 4605 5165 141308880 141309446 0.000000e+00 649.0
39 TraesCS4A01G258800 chr7A 92.140 458 36 0 4605 5062 141649037 141649494 0.000000e+00 647.0
40 TraesCS4A01G258800 chr7A 91.921 458 37 0 4605 5062 141900052 141900509 5.490000e-180 641.0
41 TraesCS4A01G258800 chr7A 96.594 323 9 1 719 1041 141048297 141048617 9.590000e-148 534.0
42 TraesCS4A01G258800 chr7A 88.411 302 24 5 6207 6497 141313387 141313688 2.880000e-93 353.0
43 TraesCS4A01G258800 chr7A 88.119 303 24 6 6207 6497 141904484 141904786 3.730000e-92 350.0
44 TraesCS4A01G258800 chr7A 87.086 302 28 5 6207 6497 141653749 141654050 1.350000e-86 331.0
45 TraesCS4A01G258800 chr7A 86.928 306 25 5 6207 6497 141059215 141059520 4.860000e-86 329.0
46 TraesCS4A01G258800 chr7A 90.043 231 20 2 4353 4580 140762974 140763204 4.930000e-76 296.0
47 TraesCS4A01G258800 chr7A 90.043 231 20 2 4353 4580 141051865 141052095 4.930000e-76 296.0
48 TraesCS4A01G258800 chr7A 90.043 231 20 2 4353 4580 141306657 141306887 4.930000e-76 296.0
49 TraesCS4A01G258800 chr7A 90.043 231 20 2 4353 4580 141646644 141646874 4.930000e-76 296.0
50 TraesCS4A01G258800 chr7A 89.868 227 20 2 4353 4576 141897825 141898051 8.240000e-74 289.0
51 TraesCS4A01G258800 chr7A 80.102 392 44 17 5575 5946 141055796 141056173 1.800000e-65 261.0
52 TraesCS4A01G258800 chr7A 80.102 392 44 17 5575 5946 141901023 141901400 1.800000e-65 261.0
53 TraesCS4A01G258800 chr7A 79.847 392 45 17 5575 5946 141309964 141310341 8.360000e-64 255.0
54 TraesCS4A01G258800 chr7A 83.729 295 23 12 5575 5858 141650343 141650623 8.360000e-64 255.0
55 TraesCS4A01G258800 chr7A 81.143 350 35 16 5575 5907 140766354 140766689 1.080000e-62 252.0
56 TraesCS4A01G258800 chr7A 92.742 124 9 0 5481 5604 140766223 140766346 5.180000e-41 180.0
57 TraesCS4A01G258800 chr7A 91.935 124 10 0 5481 5604 141650212 141650335 2.410000e-39 174.0
58 TraesCS4A01G258800 chr7A 91.935 124 10 0 5481 5604 141900892 141901015 2.410000e-39 174.0
59 TraesCS4A01G258800 chr7A 91.129 124 11 0 5481 5604 141309833 141309956 1.120000e-37 169.0
60 TraesCS4A01G258800 chr6A 88.571 1995 157 29 2292 4234 201639783 201641758 0.000000e+00 2355.0
61 TraesCS4A01G258800 chr6A 86.639 1190 148 8 1063 2245 201638501 201639686 0.000000e+00 1306.0
62 TraesCS4A01G258800 chr6A 87.040 625 74 5 1063 1682 201633129 201633751 0.000000e+00 699.0
63 TraesCS4A01G258800 chr6A 89.272 522 48 6 4605 5122 201643848 201644365 0.000000e+00 647.0
64 TraesCS4A01G258800 chr6A 92.363 419 25 2 154 566 201631267 201631684 2.020000e-164 590.0
65 TraesCS4A01G258800 chr6A 92.638 326 21 2 742 1067 201632372 201632694 3.550000e-127 466.0
66 TraesCS4A01G258800 chr6A 91.667 228 18 1 4353 4580 201641746 201641972 1.360000e-81 315.0
67 TraesCS4A01G258800 chr6A 82.424 330 41 13 5627 5946 201645165 201645487 8.300000e-69 272.0
68 TraesCS4A01G258800 chr6A 95.062 162 5 3 561 722 201631941 201632099 1.080000e-62 252.0
69 TraesCS4A01G258800 chr6A 90.972 144 10 1 5477 5620 201644930 201645070 2.390000e-44 191.0
70 TraesCS4A01G258800 chr6A 88.889 90 8 2 6367 6455 99060186 99060274 6.890000e-20 110.0
71 TraesCS4A01G258800 chr4B 87.859 1532 174 9 721 2245 24068197 24066671 0.000000e+00 1788.0
72 TraesCS4A01G258800 chr4B 88.749 1031 61 20 3245 4234 24065494 24064478 0.000000e+00 1210.0
73 TraesCS4A01G258800 chr4B 88.615 975 88 8 2290 3246 24066576 24065607 0.000000e+00 1164.0
74 TraesCS4A01G258800 chr4B 91.610 739 38 13 32 758 24068841 24068115 0.000000e+00 1000.0
75 TraesCS4A01G258800 chr4B 77.844 1679 307 36 1007 2647 22269431 22271082 0.000000e+00 979.0
76 TraesCS4A01G258800 chr4B 79.406 1010 171 17 1650 2647 22285218 22286202 0.000000e+00 678.0
77 TraesCS4A01G258800 chr3B 86.225 1539 170 18 721 2245 454649276 454650786 0.000000e+00 1629.0
78 TraesCS4A01G258800 chr3B 88.325 985 85 10 2287 3246 454650878 454651857 0.000000e+00 1155.0
79 TraesCS4A01G258800 chr3B 81.234 794 77 37 3 758 454648606 454649365 5.650000e-160 575.0
80 TraesCS4A01G258800 chr2B 96.970 132 2 2 4235 4365 534709883 534709753 3.050000e-53 220.0
81 TraesCS4A01G258800 chr2B 96.899 129 2 2 4235 4363 450995987 450995861 1.420000e-51 215.0
82 TraesCS4A01G258800 chr6B 96.183 131 3 2 4235 4364 461565406 461565535 5.100000e-51 213.0
83 TraesCS4A01G258800 chr1B 94.286 140 6 2 4235 4372 216101575 216101714 5.100000e-51 213.0
84 TraesCS4A01G258800 chr5A 95.489 133 4 1 4235 4367 23608866 23608996 1.840000e-50 211.0
85 TraesCS4A01G258800 chr5D 93.617 141 5 4 4235 4371 188340304 188340164 2.370000e-49 207.0
86 TraesCS4A01G258800 chr7B 92.500 80 5 1 6370 6448 673134365 673134286 5.320000e-21 113.0
87 TraesCS4A01G258800 chrUn 86.170 94 7 2 6281 6369 261598634 261598726 5.360000e-16 97.1
88 TraesCS4A01G258800 chrUn 86.170 94 7 2 6281 6369 353242931 353243023 5.360000e-16 97.1
89 TraesCS4A01G258800 chr1A 85.000 100 9 4 6276 6369 537048001 537047902 5.360000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G258800 chr4A 571358780 571365276 6496 False 5761.000000 9636 100.000000 1 6497 2 chr4A.!!$F3 6496
1 TraesCS4A01G258800 chr4A 588583971 588590255 6284 False 3624.333333 9114 97.608333 134 6497 3 chr4A.!!$F4 6363
2 TraesCS4A01G258800 chr4A 588633334 588634774 1440 False 1735.000000 1735 88.443000 720 2159 1 chr4A.!!$F1 1439
3 TraesCS4A01G258800 chr4A 588643404 588644698 1294 False 1426.000000 1426 87.107000 2287 3544 1 chr4A.!!$F2 1257
4 TraesCS4A01G258800 chr4A 588653812 588657773 3961 False 503.500000 942 88.614750 3546 5858 4 chr4A.!!$F5 2312
5 TraesCS4A01G258800 chr4D 13357360 13363790 6430 True 2367.500000 5075 95.229500 4 6020 4 chr4D.!!$R2 6016
6 TraesCS4A01G258800 chr4D 12368690 12370399 1709 False 1079.000000 1079 78.563000 952 2647 1 chr4D.!!$F1 1695
7 TraesCS4A01G258800 chr4D 13343675 13353331 9656 True 843.500000 2737 90.064875 4 6431 8 chr4D.!!$R1 6427
8 TraesCS4A01G258800 chr7A 140758432 140766689 8257 False 952.500000 2435 89.609000 236 5907 6 chr7A.!!$F1 5671
9 TraesCS4A01G258800 chr7A 141302616 141313688 11072 False 944.285714 2481 87.883714 236 6497 7 chr7A.!!$F3 6261
10 TraesCS4A01G258800 chr7A 141642632 141654050 11418 False 913.000000 2396 89.280857 236 6497 7 chr7A.!!$F4 6261
11 TraesCS4A01G258800 chr7A 141893354 141904786 11432 False 861.714286 2606 88.706571 236 6497 7 chr7A.!!$F5 6261
12 TraesCS4A01G258800 chr7A 141047581 141059520 11939 False 748.714286 2422 89.313429 236 6497 7 chr7A.!!$F2 6261
13 TraesCS4A01G258800 chr6A 201638501 201645487 6986 False 847.666667 2355 88.257500 1063 5946 6 chr6A.!!$F3 4883
14 TraesCS4A01G258800 chr6A 201631267 201633751 2484 False 501.750000 699 91.775750 154 1682 4 chr6A.!!$F2 1528
15 TraesCS4A01G258800 chr4B 24064478 24068841 4363 True 1290.500000 1788 89.208250 32 4234 4 chr4B.!!$R1 4202
16 TraesCS4A01G258800 chr4B 22269431 22271082 1651 False 979.000000 979 77.844000 1007 2647 1 chr4B.!!$F1 1640
17 TraesCS4A01G258800 chr4B 22285218 22286202 984 False 678.000000 678 79.406000 1650 2647 1 chr4B.!!$F2 997
18 TraesCS4A01G258800 chr3B 454648606 454651857 3251 False 1119.666667 1629 85.261333 3 3246 3 chr3B.!!$F1 3243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 196 0.447406 CTCGCATGCATTGAACGGAA 59.553 50.000 19.57 0.0 0.0 4.30 F
934 2251 1.130561 GCTTCTTTCCCGTCAATTCCG 59.869 52.381 0.00 0.0 0.0 4.30 F
2545 4414 0.896923 GCATTCAAAGCCCACCATCA 59.103 50.000 0.00 0.0 0.0 3.07 F
3159 5053 2.277969 CACTGATGAGCATGACTGTCC 58.722 52.381 5.17 0.0 0.0 4.02 F
5159 10700 3.264845 GGGGTGGTGGTGGTGGAT 61.265 66.667 0.00 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 4333 2.026522 CGACCGACTCCTCCATCTC 58.973 63.158 0.0 0.0 0.00 2.75 R
2627 4496 1.377202 GATGAGGAACCGGCAGCAA 60.377 57.895 0.0 0.0 0.00 3.91 R
3529 5562 9.135843 CAACGATCATACTAGTTGTGAAGTTAA 57.864 33.333 20.9 0.0 39.11 2.01 R
5175 11112 2.693762 CCAGCACCACTGCCATTCG 61.694 63.158 0.0 0.0 45.53 3.34 R
6402 17086 1.144057 GGACAGTGGTATCCCAGCG 59.856 63.158 0.0 0.0 42.94 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 2.819608 GCCATTTGAAACACTGAGCCTA 59.180 45.455 0.00 0.00 0.00 3.93
95 96 2.751036 TACCCGTCATCCGCGTCA 60.751 61.111 4.92 0.00 34.38 4.35
178 181 2.360225 TGCACACCTCGCATGCAT 60.360 55.556 19.57 0.00 44.17 3.96
187 196 0.447406 CTCGCATGCATTGAACGGAA 59.553 50.000 19.57 0.00 0.00 4.30
871 2187 2.207501 CTGACTCCCAGGCAGCCATT 62.208 60.000 15.80 0.00 45.62 3.16
934 2251 1.130561 GCTTCTTTCCCGTCAATTCCG 59.869 52.381 0.00 0.00 0.00 4.30
2545 4414 0.896923 GCATTCAAAGCCCACCATCA 59.103 50.000 0.00 0.00 0.00 3.07
2627 4496 3.314331 CTCCACCGTCCCTGCACT 61.314 66.667 0.00 0.00 0.00 4.40
3005 4877 6.323996 TGTGAGGGTTGATATAGGTCTGTAAG 59.676 42.308 0.00 0.00 0.00 2.34
3159 5053 2.277969 CACTGATGAGCATGACTGTCC 58.722 52.381 5.17 0.00 0.00 4.02
3536 5569 5.830000 AACCCCGCTGAAATATTAACTTC 57.170 39.130 0.00 0.00 0.00 3.01
5159 10700 3.264845 GGGGTGGTGGTGGTGGAT 61.265 66.667 0.00 0.00 0.00 3.41
5199 11985 3.289834 CAGTGGTGCTGGTGGTGC 61.290 66.667 0.00 0.00 41.42 5.01
5200 11986 3.807839 AGTGGTGCTGGTGGTGCA 61.808 61.111 0.00 0.00 38.19 4.57
5889 12821 6.927294 TGTGTTTCCTTTGTTTGTTTGTTT 57.073 29.167 0.00 0.00 0.00 2.83
5890 12822 6.719365 TGTGTTTCCTTTGTTTGTTTGTTTG 58.281 32.000 0.00 0.00 0.00 2.93
5891 12823 6.316390 TGTGTTTCCTTTGTTTGTTTGTTTGT 59.684 30.769 0.00 0.00 0.00 2.83
5892 12824 7.148239 TGTGTTTCCTTTGTTTGTTTGTTTGTT 60.148 29.630 0.00 0.00 0.00 2.83
5977 12933 7.041372 GCTGTCTTTTACAATCCTGACAAGTTA 60.041 37.037 0.00 0.00 37.74 2.24
6356 17040 6.965500 CGGCATATCATCTTGAGATTTTATGC 59.035 38.462 22.24 22.24 43.47 3.14
6384 17068 1.792949 GTAGGATAAATGCGAGCACCG 59.207 52.381 0.00 0.00 42.21 4.94
6402 17086 1.603739 GGGACTTGAACCCTGGTGC 60.604 63.158 0.00 0.00 43.65 5.01
6440 17125 3.117474 TCCACTTAACCATCCAACCACAA 60.117 43.478 0.00 0.00 0.00 3.33
6455 17140 3.457610 CCACAAGTTGGTTTGCATCTT 57.542 42.857 7.96 0.00 41.10 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.874810 CCTCCTTGTATTGACTTCGATTCAA 59.125 40.000 11.27 11.27 37.38 2.69
1 2 5.419542 CCTCCTTGTATTGACTTCGATTCA 58.580 41.667 0.00 0.00 0.00 2.57
95 96 3.199071 TGTAGACAAAGTGACCAACCTGT 59.801 43.478 0.00 0.00 0.00 4.00
178 181 0.806241 GGCCGCTATTTTCCGTTCAA 59.194 50.000 0.00 0.00 0.00 2.69
187 196 2.028020 GCCTATCTAGTGGCCGCTATTT 60.028 50.000 25.88 17.76 43.11 1.40
495 528 3.558418 GCGAGTTGTTTCCAGTGAGTTTA 59.442 43.478 0.00 0.00 0.00 2.01
871 2187 0.259065 AGGGTAGATGAGCTCGGACA 59.741 55.000 9.64 0.00 0.00 4.02
2467 4333 2.026522 CGACCGACTCCTCCATCTC 58.973 63.158 0.00 0.00 0.00 2.75
2545 4414 2.507102 CTCGTCAATGAGCGCGGT 60.507 61.111 12.23 12.23 0.00 5.68
2627 4496 1.377202 GATGAGGAACCGGCAGCAA 60.377 57.895 0.00 0.00 0.00 3.91
3005 4877 4.260334 GCAATGAGCTCAAAACAAACCAAC 60.260 41.667 22.50 0.00 41.15 3.77
3159 5053 1.377725 GTGATGGTGCCTCTGGTGG 60.378 63.158 0.00 0.00 0.00 4.61
3529 5562 9.135843 CAACGATCATACTAGTTGTGAAGTTAA 57.864 33.333 20.90 0.00 39.11 2.01
5175 11112 2.693762 CCAGCACCACTGCCATTCG 61.694 63.158 0.00 0.00 45.53 3.34
5180 11117 4.586235 ACCACCAGCACCACTGCC 62.586 66.667 0.00 0.00 45.53 4.85
5183 11957 3.807839 TGCACCACCAGCACCACT 61.808 61.111 0.00 0.00 37.02 4.00
5199 11985 4.404098 GGTACCCGCCCTGGTGTG 62.404 72.222 0.00 0.00 39.53 3.82
5200 11986 4.651516 AGGTACCCGCCCTGGTGT 62.652 66.667 8.74 0.00 39.53 4.16
5889 12821 1.203052 GGGACGATACCGACAAGAACA 59.797 52.381 0.00 0.00 39.50 3.18
5890 12822 1.475682 AGGGACGATACCGACAAGAAC 59.524 52.381 0.00 0.00 39.50 3.01
5891 12823 1.843368 AGGGACGATACCGACAAGAA 58.157 50.000 0.00 0.00 39.50 2.52
5892 12824 1.843368 AAGGGACGATACCGACAAGA 58.157 50.000 0.00 0.00 39.50 3.02
6330 17011 7.148356 GCATAAAATCTCAAGATGATATGCCGA 60.148 37.037 23.66 0.00 44.13 5.54
6356 17040 2.794910 CGCATTTATCCTACGGTGACTG 59.205 50.000 0.00 0.00 0.00 3.51
6384 17068 1.603739 GCACCAGGGTTCAAGTCCC 60.604 63.158 0.00 0.00 44.90 4.46
6402 17086 1.144057 GGACAGTGGTATCCCAGCG 59.856 63.158 0.00 0.00 42.94 5.18
6440 17125 5.069516 ACAAGATTCAAGATGCAAACCAACT 59.930 36.000 0.00 0.00 0.00 3.16
6448 17133 5.247862 TGCTCTAACAAGATTCAAGATGCA 58.752 37.500 0.00 0.00 0.00 3.96
6455 17140 4.864916 GCGATTGCTCTAACAAGATTCA 57.135 40.909 0.00 0.00 38.39 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.