Multiple sequence alignment - TraesCS4A01G257700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G257700 chr4A 100.000 7507 0 0 1 7507 570472904 570465398 0.000000e+00 13863
1 TraesCS4A01G257700 chr4A 87.547 265 21 4 360 612 674616793 674617057 5.700000e-76 296
2 TraesCS4A01G257700 chr4D 93.459 6192 277 66 607 6755 32230687 32236793 0.000000e+00 9073
3 TraesCS4A01G257700 chr4D 89.641 251 15 6 6759 7006 32236912 32237154 7.320000e-80 309
4 TraesCS4A01G257700 chr4D 79.227 414 49 17 7027 7418 32237279 32237677 3.480000e-63 254
5 TraesCS4A01G257700 chr4B 92.556 3278 154 36 622 3860 46614898 46618124 0.000000e+00 4619
6 TraesCS4A01G257700 chr4B 95.182 1453 47 10 4698 6144 46619236 46620671 0.000000e+00 2274
7 TraesCS4A01G257700 chr4B 93.849 634 19 6 6127 6750 46620852 46621475 0.000000e+00 937
8 TraesCS4A01G257700 chr4B 95.812 382 16 0 3864 4245 46618320 46618701 1.070000e-172 617
9 TraesCS4A01G257700 chr4B 89.977 439 21 9 4259 4697 46618846 46619261 5.120000e-151 545
10 TraesCS4A01G257700 chr4B 87.887 355 21 6 7172 7504 46622995 46623349 1.520000e-106 398
11 TraesCS4A01G257700 chr4B 89.641 251 13 3 361 599 453764832 453764583 2.630000e-79 307
12 TraesCS4A01G257700 chr4B 96.364 110 4 0 4152 4261 46618847 46618738 1.660000e-41 182
13 TraesCS4A01G257700 chr4B 80.165 242 36 6 81 321 46614589 46614819 3.600000e-38 171
14 TraesCS4A01G257700 chr4B 87.500 112 4 4 7030 7131 46621905 46622016 3.680000e-23 121
15 TraesCS4A01G257700 chr6D 89.655 261 15 2 361 609 24007135 24007395 9.400000e-84 322
16 TraesCS4A01G257700 chr6B 89.883 257 14 2 366 610 131732045 131732301 3.380000e-83 320
17 TraesCS4A01G257700 chr7B 88.476 269 18 5 361 617 544466689 544466422 5.660000e-81 313
18 TraesCS4A01G257700 chr7B 85.098 255 27 6 358 611 135528037 135528281 4.500000e-62 250
19 TraesCS4A01G257700 chr1B 88.889 261 16 3 361 609 240431423 240431164 7.320000e-80 309
20 TraesCS4A01G257700 chr3B 88.550 262 19 4 360 610 590628999 590629260 2.630000e-79 307
21 TraesCS4A01G257700 chr2D 88.593 263 16 7 361 610 395940195 395940456 2.630000e-79 307
22 TraesCS4A01G257700 chr2D 86.742 264 16 6 360 610 100451234 100450977 7.420000e-70 276
23 TraesCS4A01G257700 chr2A 87.833 263 18 4 360 609 585818885 585819146 5.700000e-76 296
24 TraesCS4A01G257700 chr7D 84.436 257 37 2 359 612 415950089 415949833 4.500000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G257700 chr4A 570465398 570472904 7506 True 13863.00 13863 100.000000 1 7507 1 chr4A.!!$R1 7506
1 TraesCS4A01G257700 chr4D 32230687 32237677 6990 False 3212.00 9073 87.442333 607 7418 3 chr4D.!!$F1 6811
2 TraesCS4A01G257700 chr4B 46614589 46623349 8760 False 1210.25 4619 90.366000 81 7504 8 chr4B.!!$F1 7423

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 327 0.236449 ACATTTCGTTTCGAACCCGC 59.764 50.000 10.66 0.0 45.64 6.13 F
1213 1260 0.098376 ACGACGTCGCCTGTAGATTC 59.902 55.000 35.92 0.0 44.43 2.52 F
1596 1674 0.107654 GGACGGAAATGGCTAGTGCT 60.108 55.000 0.00 0.0 39.59 4.40 F
2064 2142 0.462047 GCACTCCCGGTCTTATGGTG 60.462 60.000 0.00 0.0 0.00 4.17 F
2166 2244 0.599558 GAAGCTGCCACTGAAATGCA 59.400 50.000 0.00 0.0 0.00 3.96 F
3854 3947 1.625818 CCCTCCACTGTCAGTAGCTTT 59.374 52.381 4.85 0.0 0.00 3.51 F
3951 4236 0.394938 TTGGTGTTCCGAAGCAGCTA 59.605 50.000 0.00 4.7 36.30 3.32 F
4759 5178 0.185901 ACCCACAGAAACTGGCACAT 59.814 50.000 0.00 0.0 38.20 3.21 F
5679 6109 0.467384 AGGATGCAGATCTTGACCCG 59.533 55.000 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2143 2221 0.183492 TTTCAGTGGCAGCTTCCTGT 59.817 50.000 3.45 0.0 41.26 4.00 R
2513 2591 5.769662 TGAATTTTTAGTCCACACTGAGCAT 59.230 36.000 0.00 0.0 33.62 3.79 R
3442 3533 6.069088 AGGATGATGGGTTACTTCCAAACATA 60.069 38.462 0.00 0.0 37.87 2.29 R
3705 3797 0.035739 TTGGTAAAGGGGTCAGCGTC 59.964 55.000 0.00 0.0 0.00 5.19 R
3951 4236 6.084326 GACAATGGGTCTGTGTTAACAAAT 57.916 37.500 10.51 0.0 43.46 2.32 R
4740 5159 0.185901 ATGTGCCAGTTTCTGTGGGT 59.814 50.000 0.00 0.0 35.39 4.51 R
5571 6001 1.204704 TCATCCACGTTAGGCAGTGAG 59.795 52.381 0.00 0.0 40.56 3.51 R
6294 6925 1.726853 ACTAGCCAGATTGCGTTGAC 58.273 50.000 0.00 0.0 36.02 3.18 R
7140 8061 0.457337 CCGGTCTAAGTTTCGGACGG 60.457 60.000 0.00 0.0 44.69 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.433446 AGGACCTTGCTGCACTGG 59.567 61.111 16.37 16.37 0.00 4.00
18 19 2.674380 GGACCTTGCTGCACTGGG 60.674 66.667 20.35 16.31 0.00 4.45
19 20 2.674380 GACCTTGCTGCACTGGGG 60.674 66.667 20.35 14.30 0.00 4.96
20 21 3.177884 ACCTTGCTGCACTGGGGA 61.178 61.111 20.35 0.00 0.00 4.81
21 22 2.360852 CCTTGCTGCACTGGGGAG 60.361 66.667 0.00 0.00 38.13 4.30
22 23 2.433446 CTTGCTGCACTGGGGAGT 59.567 61.111 0.00 0.00 37.27 3.85
23 24 1.970114 CTTGCTGCACTGGGGAGTG 60.970 63.158 0.00 0.00 42.32 3.51
24 25 2.401699 CTTGCTGCACTGGGGAGTGA 62.402 60.000 0.00 0.00 42.02 3.41
25 26 2.046507 GCTGCACTGGGGAGTGAG 60.047 66.667 6.38 2.71 42.02 3.51
26 27 2.587247 GCTGCACTGGGGAGTGAGA 61.587 63.158 6.38 0.00 42.02 3.27
27 28 1.294780 CTGCACTGGGGAGTGAGAC 59.705 63.158 6.38 0.00 42.02 3.36
28 29 2.177594 CTGCACTGGGGAGTGAGACC 62.178 65.000 6.38 0.00 42.02 3.85
29 30 2.973899 CACTGGGGAGTGAGACCG 59.026 66.667 0.00 0.00 42.02 4.79
30 31 1.606601 CACTGGGGAGTGAGACCGA 60.607 63.158 0.00 0.00 42.02 4.69
31 32 1.155390 ACTGGGGAGTGAGACCGAA 59.845 57.895 0.00 0.00 0.00 4.30
32 33 0.900647 ACTGGGGAGTGAGACCGAAG 60.901 60.000 0.00 0.00 0.00 3.79
45 46 4.079446 CGAAGGGTGCACCACATT 57.921 55.556 35.78 25.85 43.89 2.71
46 47 1.875963 CGAAGGGTGCACCACATTC 59.124 57.895 35.78 30.03 43.89 2.67
47 48 0.606401 CGAAGGGTGCACCACATTCT 60.606 55.000 35.78 20.88 43.89 2.40
48 49 1.620822 GAAGGGTGCACCACATTCTT 58.379 50.000 35.78 27.36 43.89 2.52
49 50 1.963515 GAAGGGTGCACCACATTCTTT 59.036 47.619 35.78 17.28 43.89 2.52
50 51 1.331214 AGGGTGCACCACATTCTTTG 58.669 50.000 35.78 0.00 43.89 2.77
51 52 1.133513 AGGGTGCACCACATTCTTTGA 60.134 47.619 35.78 0.00 43.89 2.69
52 53 1.270550 GGGTGCACCACATTCTTTGAG 59.729 52.381 35.78 0.00 39.85 3.02
53 54 1.956477 GGTGCACCACATTCTTTGAGT 59.044 47.619 31.23 0.00 35.86 3.41
54 55 2.287788 GGTGCACCACATTCTTTGAGTG 60.288 50.000 31.23 0.00 35.86 3.51
63 64 6.564709 CACATTCTTTGAGTGGAGAAATGA 57.435 37.500 0.00 0.00 35.69 2.57
64 65 6.609533 CACATTCTTTGAGTGGAGAAATGAG 58.390 40.000 0.00 0.00 35.69 2.90
65 66 5.709164 ACATTCTTTGAGTGGAGAAATGAGG 59.291 40.000 0.00 0.00 35.69 3.86
66 67 5.567037 TTCTTTGAGTGGAGAAATGAGGA 57.433 39.130 0.00 0.00 0.00 3.71
67 68 5.768980 TCTTTGAGTGGAGAAATGAGGAT 57.231 39.130 0.00 0.00 0.00 3.24
68 69 5.494724 TCTTTGAGTGGAGAAATGAGGATG 58.505 41.667 0.00 0.00 0.00 3.51
69 70 3.272574 TGAGTGGAGAAATGAGGATGC 57.727 47.619 0.00 0.00 0.00 3.91
70 71 2.092753 TGAGTGGAGAAATGAGGATGCC 60.093 50.000 0.00 0.00 0.00 4.40
71 72 1.134280 AGTGGAGAAATGAGGATGCCG 60.134 52.381 0.00 0.00 0.00 5.69
72 73 0.464373 TGGAGAAATGAGGATGCCGC 60.464 55.000 0.00 0.00 0.00 6.53
73 74 1.502163 GGAGAAATGAGGATGCCGCG 61.502 60.000 0.00 0.00 0.00 6.46
74 75 1.502163 GAGAAATGAGGATGCCGCGG 61.502 60.000 24.05 24.05 0.00 6.46
75 76 1.819632 GAAATGAGGATGCCGCGGT 60.820 57.895 28.70 7.71 0.00 5.68
76 77 0.531974 GAAATGAGGATGCCGCGGTA 60.532 55.000 28.70 25.02 0.00 4.02
77 78 0.532862 AAATGAGGATGCCGCGGTAG 60.533 55.000 28.70 0.72 0.00 3.18
78 79 2.383245 AATGAGGATGCCGCGGTAGG 62.383 60.000 28.70 0.27 0.00 3.18
79 80 3.537874 GAGGATGCCGCGGTAGGT 61.538 66.667 28.70 8.32 0.00 3.08
111 112 8.084073 AGAATGGACAAACATTAGACAACATTG 58.916 33.333 0.00 0.00 40.92 2.82
143 144 1.524848 GAGAGAGTCGTCACAGTGGA 58.475 55.000 0.00 0.00 0.00 4.02
144 145 2.088423 GAGAGAGTCGTCACAGTGGAT 58.912 52.381 0.00 0.00 0.00 3.41
145 146 1.815613 AGAGAGTCGTCACAGTGGATG 59.184 52.381 0.00 0.00 0.00 3.51
146 147 0.891373 AGAGTCGTCACAGTGGATGG 59.109 55.000 0.00 0.00 0.00 3.51
147 148 0.737715 GAGTCGTCACAGTGGATGGC 60.738 60.000 0.00 0.00 0.00 4.40
153 154 1.137086 GTCACAGTGGATGGCGACTAT 59.863 52.381 0.00 0.00 34.35 2.12
158 159 3.196901 ACAGTGGATGGCGACTATGTAAA 59.803 43.478 0.00 0.00 31.40 2.01
165 166 1.540580 GGCGACTATGTAAAGCCCCTC 60.541 57.143 0.00 0.00 41.81 4.30
176 177 1.717032 AAGCCCCTCGACATGCTATA 58.283 50.000 0.00 0.00 32.82 1.31
180 181 3.073062 AGCCCCTCGACATGCTATAAAAT 59.927 43.478 0.00 0.00 30.97 1.82
183 184 4.216257 CCCCTCGACATGCTATAAAATTGG 59.784 45.833 0.00 0.00 0.00 3.16
185 186 5.049405 CCCTCGACATGCTATAAAATTGGAC 60.049 44.000 0.00 0.00 0.00 4.02
188 189 4.209452 ACATGCTATAAAATTGGACGCG 57.791 40.909 3.53 3.53 0.00 6.01
190 191 1.004398 TGCTATAAAATTGGACGCGCG 60.004 47.619 30.96 30.96 0.00 6.86
191 192 1.004292 GCTATAAAATTGGACGCGCGT 60.004 47.619 38.52 38.52 0.00 6.01
193 194 1.889891 ATAAAATTGGACGCGCGTTG 58.110 45.000 38.03 8.31 0.00 4.10
194 195 0.726452 TAAAATTGGACGCGCGTTGC 60.726 50.000 38.03 24.79 41.47 4.17
195 196 2.669808 AAAATTGGACGCGCGTTGCA 62.670 50.000 38.03 27.03 46.97 4.08
196 197 3.872409 AATTGGACGCGCGTTGCAC 62.872 57.895 38.03 25.68 46.97 4.57
224 225 7.383029 TGCACATTACTAGTTATATTACGTGCC 59.617 37.037 21.59 11.11 43.07 5.01
258 260 1.133325 AGCCATAGTCACTCGAGGGAT 60.133 52.381 22.47 12.33 0.00 3.85
260 262 1.000283 CCATAGTCACTCGAGGGATGC 60.000 57.143 22.47 9.09 0.00 3.91
262 264 2.145397 TAGTCACTCGAGGGATGCTT 57.855 50.000 22.47 9.69 0.00 3.91
266 268 2.625790 GTCACTCGAGGGATGCTTAGAT 59.374 50.000 22.47 0.00 0.00 1.98
268 270 3.821600 TCACTCGAGGGATGCTTAGATAC 59.178 47.826 14.89 0.00 0.00 2.24
271 273 2.552743 TCGAGGGATGCTTAGATACACG 59.447 50.000 0.00 0.00 0.00 4.49
278 280 4.151335 GGATGCTTAGATACACGCAATCTG 59.849 45.833 5.31 0.00 35.36 2.90
279 281 3.457234 TGCTTAGATACACGCAATCTGG 58.543 45.455 5.31 1.03 35.36 3.86
283 285 2.111384 AGATACACGCAATCTGGAGGT 58.889 47.619 0.00 0.00 32.44 3.85
321 323 3.595709 TCCACACATTTCGTTTCGAAC 57.404 42.857 0.00 0.00 45.64 3.95
322 324 2.288458 TCCACACATTTCGTTTCGAACC 59.712 45.455 0.00 0.00 45.64 3.62
323 325 2.603652 CCACACATTTCGTTTCGAACCC 60.604 50.000 0.00 0.00 45.64 4.11
324 326 1.262151 ACACATTTCGTTTCGAACCCG 59.738 47.619 0.00 3.45 45.64 5.28
325 327 0.236449 ACATTTCGTTTCGAACCCGC 59.764 50.000 10.66 0.00 45.64 6.13
362 377 3.405831 AGTTAAGGCGTTTCCCTTGTAC 58.594 45.455 0.00 2.73 44.68 2.90
363 378 3.072038 AGTTAAGGCGTTTCCCTTGTACT 59.928 43.478 0.00 4.71 44.68 2.73
364 379 2.651382 AAGGCGTTTCCCTTGTACTT 57.349 45.000 0.00 0.00 43.43 2.24
365 380 2.180432 AGGCGTTTCCCTTGTACTTC 57.820 50.000 0.00 0.00 34.51 3.01
366 381 1.162698 GGCGTTTCCCTTGTACTTCC 58.837 55.000 0.00 0.00 0.00 3.46
367 382 1.271217 GGCGTTTCCCTTGTACTTCCT 60.271 52.381 0.00 0.00 0.00 3.36
368 383 2.074576 GCGTTTCCCTTGTACTTCCTC 58.925 52.381 0.00 0.00 0.00 3.71
369 384 2.696506 CGTTTCCCTTGTACTTCCTCC 58.303 52.381 0.00 0.00 0.00 4.30
370 385 2.696506 GTTTCCCTTGTACTTCCTCCG 58.303 52.381 0.00 0.00 0.00 4.63
371 386 2.019807 TTCCCTTGTACTTCCTCCGT 57.980 50.000 0.00 0.00 0.00 4.69
372 387 2.019807 TCCCTTGTACTTCCTCCGTT 57.980 50.000 0.00 0.00 0.00 4.44
373 388 2.332117 TCCCTTGTACTTCCTCCGTTT 58.668 47.619 0.00 0.00 0.00 3.60
374 389 2.707257 TCCCTTGTACTTCCTCCGTTTT 59.293 45.455 0.00 0.00 0.00 2.43
375 390 3.136992 TCCCTTGTACTTCCTCCGTTTTT 59.863 43.478 0.00 0.00 0.00 1.94
376 391 4.347583 TCCCTTGTACTTCCTCCGTTTTTA 59.652 41.667 0.00 0.00 0.00 1.52
377 392 5.013391 TCCCTTGTACTTCCTCCGTTTTTAT 59.987 40.000 0.00 0.00 0.00 1.40
378 393 5.708697 CCCTTGTACTTCCTCCGTTTTTATT 59.291 40.000 0.00 0.00 0.00 1.40
379 394 6.208007 CCCTTGTACTTCCTCCGTTTTTATTT 59.792 38.462 0.00 0.00 0.00 1.40
380 395 7.391275 CCCTTGTACTTCCTCCGTTTTTATTTA 59.609 37.037 0.00 0.00 0.00 1.40
381 396 8.232513 CCTTGTACTTCCTCCGTTTTTATTTAC 58.767 37.037 0.00 0.00 0.00 2.01
382 397 8.907222 TTGTACTTCCTCCGTTTTTATTTACT 57.093 30.769 0.00 0.00 0.00 2.24
383 398 8.538409 TGTACTTCCTCCGTTTTTATTTACTC 57.462 34.615 0.00 0.00 0.00 2.59
384 399 7.603784 TGTACTTCCTCCGTTTTTATTTACTCC 59.396 37.037 0.00 0.00 0.00 3.85
385 400 5.640783 ACTTCCTCCGTTTTTATTTACTCCG 59.359 40.000 0.00 0.00 0.00 4.63
386 401 3.934579 TCCTCCGTTTTTATTTACTCCGC 59.065 43.478 0.00 0.00 0.00 5.54
387 402 3.685756 CCTCCGTTTTTATTTACTCCGCA 59.314 43.478 0.00 0.00 0.00 5.69
388 403 4.334481 CCTCCGTTTTTATTTACTCCGCAT 59.666 41.667 0.00 0.00 0.00 4.73
389 404 5.524646 CCTCCGTTTTTATTTACTCCGCATA 59.475 40.000 0.00 0.00 0.00 3.14
390 405 6.204108 CCTCCGTTTTTATTTACTCCGCATAT 59.796 38.462 0.00 0.00 0.00 1.78
391 406 7.255001 CCTCCGTTTTTATTTACTCCGCATATT 60.255 37.037 0.00 0.00 0.00 1.28
392 407 8.659925 TCCGTTTTTATTTACTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
393 408 8.767085 TCCGTTTTTATTTACTCCGCATATTAG 58.233 33.333 0.00 0.00 0.00 1.73
394 409 8.767085 CCGTTTTTATTTACTCCGCATATTAGA 58.233 33.333 0.00 0.00 0.00 2.10
395 410 9.793245 CGTTTTTATTTACTCCGCATATTAGAG 57.207 33.333 0.00 0.00 0.00 2.43
399 414 8.827177 TTATTTACTCCGCATATTAGAGTTGG 57.173 34.615 4.78 0.00 41.09 3.77
400 415 3.113260 ACTCCGCATATTAGAGTTGGC 57.887 47.619 0.00 0.00 37.60 4.52
401 416 2.700897 ACTCCGCATATTAGAGTTGGCT 59.299 45.455 0.00 0.00 37.60 4.75
402 417 3.062763 CTCCGCATATTAGAGTTGGCTG 58.937 50.000 0.00 0.00 0.00 4.85
403 418 2.698274 TCCGCATATTAGAGTTGGCTGA 59.302 45.455 0.00 0.00 0.00 4.26
404 419 3.133901 TCCGCATATTAGAGTTGGCTGAA 59.866 43.478 0.00 0.00 0.00 3.02
405 420 3.496130 CCGCATATTAGAGTTGGCTGAAG 59.504 47.826 0.00 0.00 0.00 3.02
406 421 4.122776 CGCATATTAGAGTTGGCTGAAGT 58.877 43.478 0.00 0.00 0.00 3.01
407 422 4.210120 CGCATATTAGAGTTGGCTGAAGTC 59.790 45.833 0.00 0.00 34.56 3.01
408 423 5.118990 GCATATTAGAGTTGGCTGAAGTCA 58.881 41.667 6.62 0.00 36.57 3.41
409 424 5.586243 GCATATTAGAGTTGGCTGAAGTCAA 59.414 40.000 0.00 0.00 36.57 3.18
410 425 6.094048 GCATATTAGAGTTGGCTGAAGTCAAA 59.906 38.462 0.00 0.00 41.74 2.69
411 426 7.201767 GCATATTAGAGTTGGCTGAAGTCAAAT 60.202 37.037 0.00 0.00 41.74 2.32
412 427 8.680903 CATATTAGAGTTGGCTGAAGTCAAATT 58.319 33.333 0.00 0.00 41.74 1.82
413 428 6.959639 TTAGAGTTGGCTGAAGTCAAATTT 57.040 33.333 0.00 0.00 41.74 1.82
414 429 8.635765 ATTAGAGTTGGCTGAAGTCAAATTTA 57.364 30.769 0.00 0.00 41.74 1.40
415 430 8.635765 TTAGAGTTGGCTGAAGTCAAATTTAT 57.364 30.769 0.00 0.00 41.74 1.40
416 431 7.530426 AGAGTTGGCTGAAGTCAAATTTATT 57.470 32.000 0.00 0.00 41.74 1.40
417 432 8.635765 AGAGTTGGCTGAAGTCAAATTTATTA 57.364 30.769 0.00 0.00 41.74 0.98
418 433 9.077885 AGAGTTGGCTGAAGTCAAATTTATTAA 57.922 29.630 0.00 0.00 41.74 1.40
419 434 9.691362 GAGTTGGCTGAAGTCAAATTTATTAAA 57.309 29.630 0.00 0.00 41.74 1.52
493 508 9.201989 TCTATATGAAGTGGAAGTACATTCAGT 57.798 33.333 0.00 0.00 39.91 3.41
564 579 9.730420 TTTGTCTATAAACTTTTTCAGCTTGAC 57.270 29.630 0.00 0.00 0.00 3.18
565 580 8.677148 TGTCTATAAACTTTTTCAGCTTGACT 57.323 30.769 0.00 0.00 0.00 3.41
566 581 9.120538 TGTCTATAAACTTTTTCAGCTTGACTT 57.879 29.630 0.00 0.00 0.00 3.01
567 582 9.952188 GTCTATAAACTTTTTCAGCTTGACTTT 57.048 29.630 0.00 0.00 0.00 2.66
568 583 9.950680 TCTATAAACTTTTTCAGCTTGACTTTG 57.049 29.630 0.00 0.00 0.00 2.77
569 584 9.950680 CTATAAACTTTTTCAGCTTGACTTTGA 57.049 29.630 0.00 0.00 0.00 2.69
570 585 6.951256 AAACTTTTTCAGCTTGACTTTGAC 57.049 33.333 0.00 0.00 0.00 3.18
571 586 4.998788 ACTTTTTCAGCTTGACTTTGACC 58.001 39.130 0.00 0.00 0.00 4.02
572 587 4.462483 ACTTTTTCAGCTTGACTTTGACCA 59.538 37.500 0.00 0.00 0.00 4.02
573 588 5.047377 ACTTTTTCAGCTTGACTTTGACCAA 60.047 36.000 0.00 0.00 0.00 3.67
574 589 5.398603 TTTTCAGCTTGACTTTGACCAAA 57.601 34.783 0.00 0.00 0.00 3.28
575 590 4.370364 TTCAGCTTGACTTTGACCAAAC 57.630 40.909 0.00 0.00 0.00 2.93
576 591 2.687935 TCAGCTTGACTTTGACCAAACC 59.312 45.455 0.00 0.00 0.00 3.27
577 592 2.689983 CAGCTTGACTTTGACCAAACCT 59.310 45.455 0.00 0.00 0.00 3.50
578 593 3.882888 CAGCTTGACTTTGACCAAACCTA 59.117 43.478 0.00 0.00 0.00 3.08
579 594 4.338118 CAGCTTGACTTTGACCAAACCTAA 59.662 41.667 0.00 0.00 0.00 2.69
580 595 5.010012 CAGCTTGACTTTGACCAAACCTAAT 59.990 40.000 0.00 0.00 0.00 1.73
581 596 6.206634 CAGCTTGACTTTGACCAAACCTAATA 59.793 38.462 0.00 0.00 0.00 0.98
582 597 6.206829 AGCTTGACTTTGACCAAACCTAATAC 59.793 38.462 0.00 0.00 0.00 1.89
583 598 6.548441 TTGACTTTGACCAAACCTAATACG 57.452 37.500 0.00 0.00 0.00 3.06
584 599 4.453136 TGACTTTGACCAAACCTAATACGC 59.547 41.667 0.00 0.00 0.00 4.42
585 600 3.434299 ACTTTGACCAAACCTAATACGCG 59.566 43.478 3.53 3.53 0.00 6.01
586 601 2.012937 TGACCAAACCTAATACGCGG 57.987 50.000 12.47 0.00 0.00 6.46
587 602 1.549620 TGACCAAACCTAATACGCGGA 59.450 47.619 12.47 0.00 0.00 5.54
588 603 2.199236 GACCAAACCTAATACGCGGAG 58.801 52.381 12.47 1.44 0.00 4.63
589 604 1.551883 ACCAAACCTAATACGCGGAGT 59.448 47.619 12.47 2.60 0.00 3.85
590 605 2.760092 ACCAAACCTAATACGCGGAGTA 59.240 45.455 12.47 4.11 40.03 2.59
591 606 3.195396 ACCAAACCTAATACGCGGAGTAA 59.805 43.478 12.47 0.00 39.04 2.24
592 607 4.183101 CCAAACCTAATACGCGGAGTAAA 58.817 43.478 12.47 0.00 39.04 2.01
593 608 4.630940 CCAAACCTAATACGCGGAGTAAAA 59.369 41.667 12.47 0.00 39.04 1.52
594 609 5.122082 CCAAACCTAATACGCGGAGTAAAAA 59.878 40.000 12.47 0.00 39.04 1.94
647 671 4.837896 AGCAAAGAGAAACCTTAAGCAC 57.162 40.909 0.00 0.00 32.89 4.40
701 727 9.480053 AACAAAGTTGAGAAAAATATCCACATG 57.520 29.630 0.00 0.00 0.00 3.21
723 749 5.841810 TGGAAACACCAAGAAAATAAGCAG 58.158 37.500 0.00 0.00 46.75 4.24
724 750 5.596361 TGGAAACACCAAGAAAATAAGCAGA 59.404 36.000 0.00 0.00 46.75 4.26
982 1017 3.369400 CGCCGGCCAATTGGTTCA 61.369 61.111 25.19 0.00 37.57 3.18
1213 1260 0.098376 ACGACGTCGCCTGTAGATTC 59.902 55.000 35.92 0.00 44.43 2.52
1233 1280 2.127906 CCGGTCGCGTTTGTTTCG 60.128 61.111 5.77 0.97 0.00 3.46
1257 1304 1.271934 CCATCTAGGTGCGGAGAGATG 59.728 57.143 13.42 13.42 43.22 2.90
1260 1307 2.950781 TCTAGGTGCGGAGAGATGATT 58.049 47.619 0.00 0.00 0.00 2.57
1263 1310 1.556911 AGGTGCGGAGAGATGATTTGT 59.443 47.619 0.00 0.00 0.00 2.83
1319 1391 0.109132 CATGGGAAAAGCGCTTGGTC 60.109 55.000 25.80 22.61 32.91 4.02
1342 1414 1.152546 GGCCCCTGTTGTTTGTCCT 60.153 57.895 0.00 0.00 0.00 3.85
1368 1442 3.562182 AGTTGGACGGAACAGGAAAAAT 58.438 40.909 0.00 0.00 0.00 1.82
1369 1443 3.958147 AGTTGGACGGAACAGGAAAAATT 59.042 39.130 0.00 0.00 0.00 1.82
1373 1447 4.703093 TGGACGGAACAGGAAAAATTATCC 59.297 41.667 2.63 2.63 37.22 2.59
1404 1479 7.067372 CAGGTTCTGCACAATTTGGAAGATATA 59.933 37.037 0.78 0.00 0.00 0.86
1441 1518 1.891150 TCCTTCTGGTCACTCCGTAAC 59.109 52.381 0.00 0.00 39.52 2.50
1546 1623 1.195115 TGACTGGAGAAGATTCCGGG 58.805 55.000 0.00 0.00 46.11 5.73
1566 1644 0.889186 CACACGGTCCCCCTTCTTTG 60.889 60.000 0.00 0.00 0.00 2.77
1567 1645 1.971695 CACGGTCCCCCTTCTTTGC 60.972 63.158 0.00 0.00 0.00 3.68
1596 1674 0.107654 GGACGGAAATGGCTAGTGCT 60.108 55.000 0.00 0.00 39.59 4.40
1600 1678 3.877508 GACGGAAATGGCTAGTGCTTATT 59.122 43.478 0.00 0.00 39.59 1.40
1601 1679 3.627577 ACGGAAATGGCTAGTGCTTATTG 59.372 43.478 0.00 0.00 39.59 1.90
1623 1701 4.141228 TGTTGTCCCACCCACTAATTGTTA 60.141 41.667 0.00 0.00 0.00 2.41
1665 1743 3.575399 GCTGTTGAGCACAAAAGGG 57.425 52.632 14.88 0.50 45.46 3.95
1674 1752 0.897621 GCACAAAAGGGAGGGGAATG 59.102 55.000 0.00 0.00 0.00 2.67
1790 1868 7.356540 CCGATCGTGATATCCATTAGAGTATC 58.643 42.308 15.09 0.00 0.00 2.24
1861 1939 4.099266 TGGTTTATTGTGCATTATGGAGGC 59.901 41.667 0.00 0.00 0.00 4.70
1872 1950 4.439289 GCATTATGGAGGCTTTCTTGACAC 60.439 45.833 0.00 0.00 0.00 3.67
2053 2131 1.141665 TGACATCGATGCACTCCCG 59.858 57.895 25.11 0.00 0.00 5.14
2064 2142 0.462047 GCACTCCCGGTCTTATGGTG 60.462 60.000 0.00 0.00 0.00 4.17
2166 2244 0.599558 GAAGCTGCCACTGAAATGCA 59.400 50.000 0.00 0.00 0.00 3.96
2196 2274 9.820229 TTTTGACATTATTCGAGTAATTGTGTC 57.180 29.630 18.59 18.59 39.16 3.67
2219 2297 9.491675 TGTCTAACCTTATTACAAAATGTTCGA 57.508 29.630 0.00 0.00 0.00 3.71
2298 2376 7.055667 TGGCTTAAATACACCAGAGATCTAG 57.944 40.000 0.00 0.00 0.00 2.43
2311 2389 8.583296 CACCAGAGATCTAGAATATGTCATCAA 58.417 37.037 0.00 0.00 0.00 2.57
2339 2417 5.224888 CAAATTGCAGTTACATGCTCAGTT 58.775 37.500 0.00 0.16 46.63 3.16
2443 2521 4.754114 GGTCCAGCATGATAAGATTCTGAC 59.246 45.833 0.00 0.00 39.69 3.51
2651 2738 4.012374 CTGCTCATTTATGTTGTCTGGGT 58.988 43.478 0.00 0.00 0.00 4.51
2994 3084 6.498538 ACCCATGTATTTTATGTCAAGGGAA 58.501 36.000 10.56 0.00 40.07 3.97
3640 3732 4.943705 AGTATTAGGCAATGTGTTCCACTG 59.056 41.667 0.00 0.00 35.11 3.66
3656 3748 3.326588 TCCACTGTACTGTACATTTGGCT 59.673 43.478 27.97 8.17 39.67 4.75
3681 3773 4.995487 ACGTGAACCCTTTATTCTCTTGTC 59.005 41.667 0.00 0.00 0.00 3.18
3790 3883 9.685828 TTTATCTTTACACACTTAAATTGGCAC 57.314 29.630 0.00 0.00 0.00 5.01
3791 3884 6.701145 TCTTTACACACTTAAATTGGCACA 57.299 33.333 0.00 0.00 0.00 4.57
3792 3885 6.500041 TCTTTACACACTTAAATTGGCACAC 58.500 36.000 0.00 0.00 39.29 3.82
3793 3886 6.320164 TCTTTACACACTTAAATTGGCACACT 59.680 34.615 0.00 0.00 39.29 3.55
3794 3887 6.458232 TTACACACTTAAATTGGCACACTT 57.542 33.333 0.00 0.00 39.29 3.16
3795 3888 7.569639 TTACACACTTAAATTGGCACACTTA 57.430 32.000 0.00 0.00 39.29 2.24
3796 3889 6.458232 ACACACTTAAATTGGCACACTTAA 57.542 33.333 0.00 0.00 39.29 1.85
3797 3890 6.868622 ACACACTTAAATTGGCACACTTAAA 58.131 32.000 0.00 0.00 39.29 1.52
3798 3891 7.496747 ACACACTTAAATTGGCACACTTAAAT 58.503 30.769 0.00 0.00 39.29 1.40
3799 3892 7.984617 ACACACTTAAATTGGCACACTTAAATT 59.015 29.630 0.00 0.00 39.29 1.82
3800 3893 8.274939 CACACTTAAATTGGCACACTTAAATTG 58.725 33.333 0.00 0.00 39.29 2.32
3801 3894 7.440856 ACACTTAAATTGGCACACTTAAATTGG 59.559 33.333 0.00 0.00 39.29 3.16
3802 3895 6.426633 ACTTAAATTGGCACACTTAAATTGGC 59.573 34.615 0.00 0.00 39.29 4.52
3803 3896 4.348863 AATTGGCACACTTAAATTGGCA 57.651 36.364 0.00 3.53 43.42 4.92
3854 3947 1.625818 CCCTCCACTGTCAGTAGCTTT 59.374 52.381 4.85 0.00 0.00 3.51
3951 4236 0.394938 TTGGTGTTCCGAAGCAGCTA 59.605 50.000 0.00 4.70 36.30 3.32
4069 4354 3.531538 TCTTTTCAGCTACCATAAGGCG 58.468 45.455 0.00 0.00 39.06 5.52
4129 4414 1.546029 TCTCTCACAGGTGAATGGACG 59.454 52.381 3.45 0.00 39.39 4.79
4166 4451 7.908082 TCTTGACTTCTGTGAAAATTTTGTACG 59.092 33.333 8.47 4.77 0.00 3.67
4298 4715 8.792830 ACATTTGATGGATAGGTAGTAGGTTA 57.207 34.615 0.00 0.00 33.60 2.85
4314 4731 4.762289 AGGTTACAGATAGCTTGAAGGG 57.238 45.455 0.00 0.00 0.00 3.95
4359 4776 4.645588 ACTAACTGGATTAGGTCTTCTCCG 59.354 45.833 0.00 0.00 44.17 4.63
4450 4867 3.958147 TGGCTCGATCATTCTAAGGTGTA 59.042 43.478 0.00 0.00 0.00 2.90
4513 4931 1.614996 TTTTTGAGCCGGAATCAGCA 58.385 45.000 5.05 0.00 0.00 4.41
4514 4932 1.838112 TTTTGAGCCGGAATCAGCAT 58.162 45.000 5.05 0.00 0.00 3.79
4542 4960 6.479990 CGTGTTCTGGATGAGATATAAGCAAA 59.520 38.462 0.00 0.00 0.00 3.68
4543 4961 7.172190 CGTGTTCTGGATGAGATATAAGCAAAT 59.828 37.037 0.00 0.00 0.00 2.32
4557 4975 4.859304 AAGCAAATGCATCTTTCAGTCA 57.141 36.364 8.28 0.00 45.16 3.41
4568 4986 6.992123 TGCATCTTTCAGTCAGAAGAGTAAAA 59.008 34.615 0.00 0.00 37.57 1.52
4587 5005 3.431922 AATTGCATTTCTCGCCAGATG 57.568 42.857 0.00 0.00 0.00 2.90
4615 5034 2.296471 CAGTAGTCGTGAGTTCACCCTT 59.704 50.000 6.68 0.00 43.66 3.95
4697 5116 1.412343 AGCACACCCAAATCCACAAAC 59.588 47.619 0.00 0.00 0.00 2.93
4698 5117 1.540146 GCACACCCAAATCCACAAACC 60.540 52.381 0.00 0.00 0.00 3.27
4699 5118 2.038659 CACACCCAAATCCACAAACCT 58.961 47.619 0.00 0.00 0.00 3.50
4701 5120 3.005367 CACACCCAAATCCACAAACCTAC 59.995 47.826 0.00 0.00 0.00 3.18
4702 5121 3.226777 CACCCAAATCCACAAACCTACA 58.773 45.455 0.00 0.00 0.00 2.74
4703 5122 3.639094 CACCCAAATCCACAAACCTACAA 59.361 43.478 0.00 0.00 0.00 2.41
4704 5123 3.895041 ACCCAAATCCACAAACCTACAAG 59.105 43.478 0.00 0.00 0.00 3.16
4705 5124 3.306019 CCCAAATCCACAAACCTACAAGC 60.306 47.826 0.00 0.00 0.00 4.01
4706 5125 3.320541 CCAAATCCACAAACCTACAAGCA 59.679 43.478 0.00 0.00 0.00 3.91
4707 5126 4.298332 CAAATCCACAAACCTACAAGCAC 58.702 43.478 0.00 0.00 0.00 4.40
4708 5127 2.719531 TCCACAAACCTACAAGCACA 57.280 45.000 0.00 0.00 0.00 4.57
4709 5128 2.294074 TCCACAAACCTACAAGCACAC 58.706 47.619 0.00 0.00 0.00 3.82
4710 5129 1.336755 CCACAAACCTACAAGCACACC 59.663 52.381 0.00 0.00 0.00 4.16
4711 5130 1.336755 CACAAACCTACAAGCACACCC 59.663 52.381 0.00 0.00 0.00 4.61
4712 5131 1.064314 ACAAACCTACAAGCACACCCA 60.064 47.619 0.00 0.00 0.00 4.51
4713 5132 2.028130 CAAACCTACAAGCACACCCAA 58.972 47.619 0.00 0.00 0.00 4.12
4714 5133 2.428890 CAAACCTACAAGCACACCCAAA 59.571 45.455 0.00 0.00 0.00 3.28
4715 5134 2.675658 ACCTACAAGCACACCCAAAT 57.324 45.000 0.00 0.00 0.00 2.32
4716 5135 2.514803 ACCTACAAGCACACCCAAATC 58.485 47.619 0.00 0.00 0.00 2.17
4717 5136 1.818674 CCTACAAGCACACCCAAATCC 59.181 52.381 0.00 0.00 0.00 3.01
4718 5137 2.513753 CTACAAGCACACCCAAATCCA 58.486 47.619 0.00 0.00 0.00 3.41
4719 5138 1.039856 ACAAGCACACCCAAATCCAC 58.960 50.000 0.00 0.00 0.00 4.02
4720 5139 1.039068 CAAGCACACCCAAATCCACA 58.961 50.000 0.00 0.00 0.00 4.17
4721 5140 1.411977 CAAGCACACCCAAATCCACAA 59.588 47.619 0.00 0.00 0.00 3.33
4722 5141 1.786937 AGCACACCCAAATCCACAAA 58.213 45.000 0.00 0.00 0.00 2.83
4723 5142 2.114616 AGCACACCCAAATCCACAAAA 58.885 42.857 0.00 0.00 0.00 2.44
4724 5143 2.503356 AGCACACCCAAATCCACAAAAA 59.497 40.909 0.00 0.00 0.00 1.94
4725 5144 2.871633 GCACACCCAAATCCACAAAAAG 59.128 45.455 0.00 0.00 0.00 2.27
4726 5145 3.431486 GCACACCCAAATCCACAAAAAGA 60.431 43.478 0.00 0.00 0.00 2.52
4727 5146 4.764172 CACACCCAAATCCACAAAAAGAA 58.236 39.130 0.00 0.00 0.00 2.52
4728 5147 4.570369 CACACCCAAATCCACAAAAAGAAC 59.430 41.667 0.00 0.00 0.00 3.01
4729 5148 4.223923 ACACCCAAATCCACAAAAAGAACA 59.776 37.500 0.00 0.00 0.00 3.18
4730 5149 5.181748 CACCCAAATCCACAAAAAGAACAA 58.818 37.500 0.00 0.00 0.00 2.83
4731 5150 5.645497 CACCCAAATCCACAAAAAGAACAAA 59.355 36.000 0.00 0.00 0.00 2.83
4759 5178 0.185901 ACCCACAGAAACTGGCACAT 59.814 50.000 0.00 0.00 38.20 3.21
4867 5286 4.873010 TCTTTACATCTCTAGGCTCCACT 58.127 43.478 0.00 0.00 0.00 4.00
4936 5355 5.052693 TGATTGCATAGGCTGTTTATCCT 57.947 39.130 0.00 0.00 41.91 3.24
5001 5420 4.254709 ACCTGACTGCTTGCGCCA 62.255 61.111 4.18 0.00 34.43 5.69
5002 5421 3.730761 CCTGACTGCTTGCGCCAC 61.731 66.667 4.18 0.00 34.43 5.01
5003 5422 2.667536 CTGACTGCTTGCGCCACT 60.668 61.111 4.18 0.00 34.43 4.00
5004 5423 2.962827 CTGACTGCTTGCGCCACTG 61.963 63.158 4.18 0.43 34.43 3.66
5059 5482 4.695455 GGTTCAAAGCACATAACTAGAGCA 59.305 41.667 0.00 0.00 0.00 4.26
5066 5489 4.932200 AGCACATAACTAGAGCAAGTTCAC 59.068 41.667 0.00 0.00 40.20 3.18
5094 5517 7.717875 GGTGTTATATACCTTGTTTAGATGGCA 59.282 37.037 0.00 0.00 35.30 4.92
5151 5574 4.616181 ATGCAATTACTCCAAGTAACGC 57.384 40.909 12.68 12.68 42.78 4.84
5152 5575 3.670625 TGCAATTACTCCAAGTAACGCT 58.329 40.909 17.23 0.91 42.78 5.07
5310 5739 4.839121 TGGCCTGTTAACCACTTATACTG 58.161 43.478 3.32 0.00 0.00 2.74
5571 6001 4.117685 CAATTAGGGTAGTGCGTAGGTTC 58.882 47.826 0.00 0.00 0.00 3.62
5679 6109 0.467384 AGGATGCAGATCTTGACCCG 59.533 55.000 0.00 0.00 0.00 5.28
5703 6133 2.890311 TGTTGCTGGTAAACTTCCATGG 59.110 45.455 4.97 4.97 34.26 3.66
5927 6357 9.617523 TGCCATATGATTAATATCACCTGTATG 57.382 33.333 3.65 0.00 43.29 2.39
5951 6381 3.706594 CTGATTGACAGGGTCTTAGGCTA 59.293 47.826 0.00 0.00 42.39 3.93
6057 6487 7.303634 TCAAACTTGTTTCAAGAGTGTCTAC 57.696 36.000 15.04 0.00 0.00 2.59
6080 6510 9.202273 CTACTTTATCTGATATCAGTTTGAGCC 57.798 37.037 27.80 0.00 44.12 4.70
6259 6890 2.138320 ACACTGCGAAGTGAGATGTTG 58.862 47.619 30.50 0.69 42.02 3.33
6272 6903 2.503356 GAGATGTTGACCTCCCATGTCT 59.497 50.000 0.00 0.00 33.83 3.41
6294 6925 2.417933 GGCTGTCAGCTAACTCATTGTG 59.582 50.000 23.68 0.00 41.99 3.33
6603 7236 4.040095 TGAATGTGCATATCAGGAGGAGAG 59.960 45.833 0.00 0.00 0.00 3.20
6613 7246 2.158340 TCAGGAGGAGAGGGATCATCAG 60.158 54.545 0.00 0.00 31.69 2.90
6705 7341 7.492524 TGTAATTATTAATCCGCATTTTGGCA 58.507 30.769 0.00 0.00 0.00 4.92
6739 7375 9.092876 GTTCTCTTCATGTTCTCGAATAATCTT 57.907 33.333 0.00 0.00 0.00 2.40
6751 7387 4.098960 TCGAATAATCTTGTTCGGCCTAGT 59.901 41.667 17.76 0.00 47.00 2.57
6755 7391 7.170998 CGAATAATCTTGTTCGGCCTAGTAATT 59.829 37.037 12.30 0.00 44.54 1.40
6756 7392 9.485206 GAATAATCTTGTTCGGCCTAGTAATTA 57.515 33.333 0.00 0.00 0.00 1.40
6760 7396 9.841295 AATCTTGTTCGGCCTAGTAATTATTAA 57.159 29.630 0.00 0.00 0.00 1.40
6761 7397 9.841295 ATCTTGTTCGGCCTAGTAATTATTAAA 57.159 29.630 0.00 0.00 0.00 1.52
6763 7399 9.712359 CTTGTTCGGCCTAGTAATTATTAAAAC 57.288 33.333 0.00 0.00 0.00 2.43
6764 7400 7.908230 TGTTCGGCCTAGTAATTATTAAAACG 58.092 34.615 0.00 0.00 0.00 3.60
6765 7401 6.529463 TCGGCCTAGTAATTATTAAAACGC 57.471 37.500 0.00 0.00 0.00 4.84
6766 7402 6.047870 TCGGCCTAGTAATTATTAAAACGCA 58.952 36.000 0.00 0.00 0.00 5.24
6887 7645 1.202687 TGTCTGAAGCTTCTGTGGTGG 60.203 52.381 26.09 8.49 0.00 4.61
6903 7661 3.057806 GTGGTGGCACAATGTTAAGGTAC 60.058 47.826 20.82 0.00 44.16 3.34
6906 7664 2.809119 TGGCACAATGTTAAGGTACGTG 59.191 45.455 0.00 0.00 31.92 4.49
6925 7683 2.880890 GTGTGAAGCTTCTGTGGTGATT 59.119 45.455 26.09 0.00 0.00 2.57
6926 7684 4.065088 GTGTGAAGCTTCTGTGGTGATTA 58.935 43.478 26.09 0.00 0.00 1.75
6941 7734 6.263617 TGTGGTGATTAAGGTGTTAAGGTTTC 59.736 38.462 0.00 0.00 31.56 2.78
6942 7735 6.263617 GTGGTGATTAAGGTGTTAAGGTTTCA 59.736 38.462 0.00 0.00 31.56 2.69
6943 7736 6.488683 TGGTGATTAAGGTGTTAAGGTTTCAG 59.511 38.462 0.00 0.00 31.56 3.02
6944 7737 6.713450 GGTGATTAAGGTGTTAAGGTTTCAGA 59.287 38.462 0.00 0.00 31.56 3.27
6945 7738 7.393515 GGTGATTAAGGTGTTAAGGTTTCAGAT 59.606 37.037 0.00 0.00 31.56 2.90
6949 7742 6.391227 AAGGTGTTAAGGTTTCAGATTGTG 57.609 37.500 0.00 0.00 0.00 3.33
6951 7744 5.299279 AGGTGTTAAGGTTTCAGATTGTGTG 59.701 40.000 0.00 0.00 0.00 3.82
6954 7747 7.352739 GTGTTAAGGTTTCAGATTGTGTGTAG 58.647 38.462 0.00 0.00 0.00 2.74
6955 7748 7.225931 GTGTTAAGGTTTCAGATTGTGTGTAGA 59.774 37.037 0.00 0.00 0.00 2.59
6956 7749 7.225931 TGTTAAGGTTTCAGATTGTGTGTAGAC 59.774 37.037 0.00 0.00 0.00 2.59
6977 7776 7.045126 AGACTAACGAATTTAGCTAGCTGAT 57.955 36.000 27.68 17.30 41.03 2.90
6983 7782 5.982516 ACGAATTTAGCTAGCTGATCTCTTG 59.017 40.000 27.68 11.96 0.00 3.02
7002 7801 1.303309 GAGCATGTCCATGTGGTAGC 58.697 55.000 8.91 0.18 40.80 3.58
7003 7802 0.107017 AGCATGTCCATGTGGTAGCC 60.107 55.000 8.91 0.00 40.80 3.93
7006 7805 0.107703 ATGTCCATGTGGTAGCCGTG 60.108 55.000 0.00 0.00 36.34 4.94
7025 7824 2.928116 GTGACCGTGAGTATTACTTGGC 59.072 50.000 0.00 0.00 0.00 4.52
7058 7969 2.125673 CCCGCCGTGAGTACTTGG 60.126 66.667 0.00 0.81 0.00 3.61
7060 7971 1.736645 CCGCCGTGAGTACTTGGTG 60.737 63.158 13.46 13.46 0.00 4.17
7061 7972 1.287815 CGCCGTGAGTACTTGGTGA 59.712 57.895 14.68 0.00 33.86 4.02
7062 7973 0.319211 CGCCGTGAGTACTTGGTGAA 60.319 55.000 14.68 0.00 33.86 3.18
7063 7974 1.671850 CGCCGTGAGTACTTGGTGAAT 60.672 52.381 14.68 0.00 33.86 2.57
7066 7986 2.289444 CCGTGAGTACTTGGTGAATGGT 60.289 50.000 0.00 0.00 0.00 3.55
7132 8053 5.559770 TGTGCAAGAGATTTGGACATCTAA 58.440 37.500 9.66 0.00 43.96 2.10
7134 8055 6.660521 TGTGCAAGAGATTTGGACATCTAAAT 59.339 34.615 9.66 3.14 43.96 1.40
7138 8059 8.125448 GCAAGAGATTTGGACATCTAAATACAC 58.875 37.037 3.48 0.21 37.20 2.90
7140 8061 9.606631 AAGAGATTTGGACATCTAAATACACTC 57.393 33.333 3.48 6.52 37.20 3.51
7145 8066 4.098960 TGGACATCTAAATACACTCCGTCC 59.901 45.833 0.00 0.00 40.63 4.79
7150 8071 4.737054 TCTAAATACACTCCGTCCGAAAC 58.263 43.478 0.00 0.00 0.00 2.78
7152 8073 3.672767 AATACACTCCGTCCGAAACTT 57.327 42.857 0.00 0.00 0.00 2.66
7153 8074 4.789012 AATACACTCCGTCCGAAACTTA 57.211 40.909 0.00 0.00 0.00 2.24
7155 8076 2.233271 ACACTCCGTCCGAAACTTAGA 58.767 47.619 0.00 0.00 0.00 2.10
7156 8077 2.030451 ACACTCCGTCCGAAACTTAGAC 60.030 50.000 0.00 0.00 0.00 2.59
7158 8079 0.523072 TCCGTCCGAAACTTAGACCG 59.477 55.000 0.00 0.00 0.00 4.79
7162 8083 2.064014 GTCCGAAACTTAGACCGGTTG 58.936 52.381 9.42 2.12 42.34 3.77
7163 8084 0.794473 CCGAAACTTAGACCGGTTGC 59.206 55.000 9.42 0.00 37.40 4.17
7165 8086 2.353011 CCGAAACTTAGACCGGTTGCTA 60.353 50.000 9.42 3.21 37.40 3.49
7166 8087 3.319755 CGAAACTTAGACCGGTTGCTAA 58.680 45.455 9.42 12.08 0.00 3.09
7171 8092 6.481434 AACTTAGACCGGTTGCTAAGATAT 57.519 37.500 33.50 21.97 43.88 1.63
7236 9100 6.542821 TGATTTTTCTAGCCGGATTATCCAT 58.457 36.000 5.05 0.00 35.91 3.41
7307 9189 6.721704 ACTTGTATCACATGAGAGATAGCA 57.278 37.500 0.00 3.52 29.69 3.49
7326 9208 4.697300 GCACATGCTTGTTAGTGTTTTG 57.303 40.909 1.83 0.00 38.21 2.44
7329 9211 5.500610 GCACATGCTTGTTAGTGTTTTGTTG 60.501 40.000 1.83 0.00 38.21 3.33
7399 9282 8.704234 GTGCATAAGTATTACTACTTGCTCATC 58.296 37.037 14.06 2.81 45.61 2.92
7445 9328 9.452287 AAATATGTTAACTTATACACCGGTTGT 57.548 29.630 2.97 9.80 42.84 3.32
7459 9342 6.465948 ACACCGGTTGTATTCTGTACATAAA 58.534 36.000 2.97 0.00 36.32 1.40
7462 9345 5.007332 CCGGTTGTATTCTGTACATAAAGGC 59.993 44.000 0.00 0.00 0.00 4.35
7470 9353 4.832248 TCTGTACATAAAGGCTGTCTTGG 58.168 43.478 0.00 0.00 35.55 3.61
7478 9361 4.640771 AAAGGCTGTCTTGGAAGATGTA 57.359 40.909 0.00 0.00 37.39 2.29
7480 9363 4.851639 AGGCTGTCTTGGAAGATGTAAT 57.148 40.909 0.00 0.00 37.39 1.89
7481 9364 5.184892 AGGCTGTCTTGGAAGATGTAATT 57.815 39.130 0.00 0.00 37.39 1.40
7482 9365 4.946157 AGGCTGTCTTGGAAGATGTAATTG 59.054 41.667 0.00 0.00 37.39 2.32
7483 9366 4.439289 GGCTGTCTTGGAAGATGTAATTGC 60.439 45.833 0.00 0.00 37.39 3.56
7505 9390 3.187478 CACATCGGTTAAGTTGTGCTG 57.813 47.619 0.00 0.00 35.77 4.41
7506 9391 1.535462 ACATCGGTTAAGTTGTGCTGC 59.465 47.619 0.00 0.00 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.433446 CCAGTGCAGCAAGGTCCT 59.567 61.111 0.00 0.00 0.00 3.85
1 2 2.674380 CCCAGTGCAGCAAGGTCC 60.674 66.667 12.85 0.00 0.00 4.46
2 3 2.674380 CCCCAGTGCAGCAAGGTC 60.674 66.667 12.85 0.00 0.00 3.85
3 4 3.177884 TCCCCAGTGCAGCAAGGT 61.178 61.111 12.85 0.00 0.00 3.50
4 5 2.360852 CTCCCCAGTGCAGCAAGG 60.361 66.667 0.00 1.79 0.00 3.61
5 6 1.970114 CACTCCCCAGTGCAGCAAG 60.970 63.158 0.00 0.00 43.77 4.01
6 7 2.113774 CACTCCCCAGTGCAGCAA 59.886 61.111 0.00 0.00 43.77 3.91
13 14 0.900647 CTTCGGTCTCACTCCCCAGT 60.901 60.000 0.00 0.00 0.00 4.00
14 15 1.608717 CCTTCGGTCTCACTCCCCAG 61.609 65.000 0.00 0.00 0.00 4.45
15 16 1.609501 CCTTCGGTCTCACTCCCCA 60.610 63.158 0.00 0.00 0.00 4.96
16 17 2.359967 CCCTTCGGTCTCACTCCCC 61.360 68.421 0.00 0.00 0.00 4.81
17 18 1.609794 ACCCTTCGGTCTCACTCCC 60.610 63.158 0.00 0.00 38.28 4.30
18 19 1.592223 CACCCTTCGGTCTCACTCC 59.408 63.158 0.00 0.00 42.04 3.85
19 20 1.079750 GCACCCTTCGGTCTCACTC 60.080 63.158 0.00 0.00 42.04 3.51
20 21 1.837051 TGCACCCTTCGGTCTCACT 60.837 57.895 0.00 0.00 42.04 3.41
21 22 1.668151 GTGCACCCTTCGGTCTCAC 60.668 63.158 5.22 0.00 42.04 3.51
22 23 2.741092 GTGCACCCTTCGGTCTCA 59.259 61.111 5.22 0.00 42.04 3.27
23 24 2.047179 GGTGCACCCTTCGGTCTC 60.047 66.667 26.31 0.00 42.04 3.36
24 25 2.847234 TGGTGCACCCTTCGGTCT 60.847 61.111 32.62 0.00 42.04 3.85
25 26 2.668550 GTGGTGCACCCTTCGGTC 60.669 66.667 32.62 10.46 42.04 4.79
26 27 2.351924 AATGTGGTGCACCCTTCGGT 62.352 55.000 32.62 10.58 46.31 4.69
27 28 1.586154 GAATGTGGTGCACCCTTCGG 61.586 60.000 32.62 0.00 32.73 4.30
28 29 0.606401 AGAATGTGGTGCACCCTTCG 60.606 55.000 32.62 0.00 33.35 3.79
29 30 1.620822 AAGAATGTGGTGCACCCTTC 58.379 50.000 32.62 27.81 32.73 3.46
30 31 1.688197 CAAAGAATGTGGTGCACCCTT 59.312 47.619 32.62 23.46 32.73 3.95
31 32 1.133513 TCAAAGAATGTGGTGCACCCT 60.134 47.619 32.62 18.96 32.73 4.34
32 33 1.270550 CTCAAAGAATGTGGTGCACCC 59.729 52.381 32.62 23.09 32.73 4.61
33 34 1.956477 ACTCAAAGAATGTGGTGCACC 59.044 47.619 29.67 29.67 32.73 5.01
34 35 2.287788 CCACTCAAAGAATGTGGTGCAC 60.288 50.000 8.80 8.80 44.35 4.57
35 36 1.955778 CCACTCAAAGAATGTGGTGCA 59.044 47.619 0.00 0.00 44.35 4.57
36 37 2.712057 CCACTCAAAGAATGTGGTGC 57.288 50.000 0.00 0.00 44.35 5.01
40 41 6.349115 CCTCATTTCTCCACTCAAAGAATGTG 60.349 42.308 0.00 0.00 31.89 3.21
41 42 5.709164 CCTCATTTCTCCACTCAAAGAATGT 59.291 40.000 0.00 0.00 31.89 2.71
42 43 5.942236 TCCTCATTTCTCCACTCAAAGAATG 59.058 40.000 0.00 0.00 31.89 2.67
43 44 6.131972 TCCTCATTTCTCCACTCAAAGAAT 57.868 37.500 0.00 0.00 31.89 2.40
44 45 5.567037 TCCTCATTTCTCCACTCAAAGAA 57.433 39.130 0.00 0.00 0.00 2.52
45 46 5.494724 CATCCTCATTTCTCCACTCAAAGA 58.505 41.667 0.00 0.00 0.00 2.52
46 47 4.096081 GCATCCTCATTTCTCCACTCAAAG 59.904 45.833 0.00 0.00 0.00 2.77
47 48 4.012374 GCATCCTCATTTCTCCACTCAAA 58.988 43.478 0.00 0.00 0.00 2.69
48 49 3.614092 GCATCCTCATTTCTCCACTCAA 58.386 45.455 0.00 0.00 0.00 3.02
49 50 2.092753 GGCATCCTCATTTCTCCACTCA 60.093 50.000 0.00 0.00 0.00 3.41
50 51 2.570135 GGCATCCTCATTTCTCCACTC 58.430 52.381 0.00 0.00 0.00 3.51
51 52 1.134280 CGGCATCCTCATTTCTCCACT 60.134 52.381 0.00 0.00 0.00 4.00
52 53 1.303309 CGGCATCCTCATTTCTCCAC 58.697 55.000 0.00 0.00 0.00 4.02
53 54 0.464373 GCGGCATCCTCATTTCTCCA 60.464 55.000 0.00 0.00 0.00 3.86
54 55 1.502163 CGCGGCATCCTCATTTCTCC 61.502 60.000 0.00 0.00 0.00 3.71
55 56 1.502163 CCGCGGCATCCTCATTTCTC 61.502 60.000 14.67 0.00 0.00 2.87
56 57 1.524621 CCGCGGCATCCTCATTTCT 60.525 57.895 14.67 0.00 0.00 2.52
57 58 0.531974 TACCGCGGCATCCTCATTTC 60.532 55.000 28.58 0.00 0.00 2.17
58 59 0.532862 CTACCGCGGCATCCTCATTT 60.533 55.000 28.58 3.48 0.00 2.32
59 60 1.069765 CTACCGCGGCATCCTCATT 59.930 57.895 28.58 4.37 0.00 2.57
60 61 2.737180 CTACCGCGGCATCCTCAT 59.263 61.111 28.58 5.26 0.00 2.90
61 62 2.914756 TACCTACCGCGGCATCCTCA 62.915 60.000 28.58 1.01 0.00 3.86
62 63 1.533469 ATACCTACCGCGGCATCCTC 61.533 60.000 28.58 0.00 0.00 3.71
63 64 1.119574 AATACCTACCGCGGCATCCT 61.120 55.000 28.58 7.96 0.00 3.24
64 65 0.669625 GAATACCTACCGCGGCATCC 60.670 60.000 28.58 2.41 0.00 3.51
65 66 0.669625 GGAATACCTACCGCGGCATC 60.670 60.000 28.58 12.57 0.00 3.91
66 67 1.370064 GGAATACCTACCGCGGCAT 59.630 57.895 28.58 9.80 0.00 4.40
67 68 2.023414 CTGGAATACCTACCGCGGCA 62.023 60.000 28.58 12.87 37.04 5.69
68 69 1.300697 CTGGAATACCTACCGCGGC 60.301 63.158 28.58 5.70 37.04 6.53
69 70 0.748450 TTCTGGAATACCTACCGCGG 59.252 55.000 26.86 26.86 37.04 6.46
70 71 2.404215 CATTCTGGAATACCTACCGCG 58.596 52.381 0.00 0.00 37.04 6.46
71 72 2.367567 TCCATTCTGGAATACCTACCGC 59.632 50.000 0.00 0.00 45.00 5.68
91 92 5.402270 GCACCAATGTTGTCTAATGTTTGTC 59.598 40.000 0.00 0.00 0.00 3.18
92 93 5.163468 TGCACCAATGTTGTCTAATGTTTGT 60.163 36.000 0.00 0.00 0.00 2.83
100 101 2.839975 TCGTTGCACCAATGTTGTCTA 58.160 42.857 0.00 0.00 32.76 2.59
103 104 2.545532 CCATTCGTTGCACCAATGTTGT 60.546 45.455 9.49 0.00 32.76 3.32
111 112 1.338200 ACTCTCTCCATTCGTTGCACC 60.338 52.381 0.00 0.00 0.00 5.01
124 125 1.524848 TCCACTGTGACGACTCTCTC 58.475 55.000 9.86 0.00 0.00 3.20
125 126 1.815613 CATCCACTGTGACGACTCTCT 59.184 52.381 9.86 0.00 0.00 3.10
143 144 1.202770 GGGGCTTTACATAGTCGCCAT 60.203 52.381 0.00 0.00 42.43 4.40
144 145 0.179468 GGGGCTTTACATAGTCGCCA 59.821 55.000 0.00 0.00 42.43 5.69
145 146 0.468648 AGGGGCTTTACATAGTCGCC 59.531 55.000 0.00 0.00 39.98 5.54
146 147 1.867166 GAGGGGCTTTACATAGTCGC 58.133 55.000 0.00 0.00 33.32 5.19
147 148 1.679680 TCGAGGGGCTTTACATAGTCG 59.320 52.381 0.00 0.00 0.00 4.18
153 154 0.392461 GCATGTCGAGGGGCTTTACA 60.392 55.000 0.00 0.00 0.00 2.41
158 159 1.717032 TTATAGCATGTCGAGGGGCT 58.283 50.000 9.28 9.28 40.26 5.19
165 166 4.211389 GCGTCCAATTTTATAGCATGTCG 58.789 43.478 0.00 0.00 0.00 4.35
176 177 2.014018 GCAACGCGCGTCCAATTTT 61.014 52.632 37.77 16.50 0.00 1.82
193 194 6.764877 ATATAACTAGTAATGTGCACGTGC 57.235 37.500 33.11 33.11 42.50 5.34
194 195 8.414923 CGTAATATAACTAGTAATGTGCACGTG 58.585 37.037 13.39 12.28 0.00 4.49
195 196 8.131100 ACGTAATATAACTAGTAATGTGCACGT 58.869 33.333 13.13 9.52 0.00 4.49
196 197 8.414923 CACGTAATATAACTAGTAATGTGCACG 58.585 37.037 13.13 4.16 0.00 5.34
197 198 8.212495 GCACGTAATATAACTAGTAATGTGCAC 58.788 37.037 10.75 10.75 39.42 4.57
198 199 7.383029 GGCACGTAATATAACTAGTAATGTGCA 59.617 37.037 22.74 0.00 40.33 4.57
199 200 7.727017 GGCACGTAATATAACTAGTAATGTGC 58.273 38.462 17.95 17.95 39.19 4.57
224 225 2.887568 GGCTCACGCATCCTGTCG 60.888 66.667 0.00 0.00 38.10 4.35
236 238 1.393603 CCTCGAGTGACTATGGCTCA 58.606 55.000 12.31 0.00 0.00 4.26
244 246 2.028130 CTAAGCATCCCTCGAGTGACT 58.972 52.381 12.31 0.00 0.00 3.41
248 250 3.570550 GTGTATCTAAGCATCCCTCGAGT 59.429 47.826 12.31 0.00 0.00 4.18
251 253 2.922758 GCGTGTATCTAAGCATCCCTCG 60.923 54.545 0.00 0.00 0.00 4.63
258 260 3.132111 TCCAGATTGCGTGTATCTAAGCA 59.868 43.478 0.00 0.00 37.89 3.91
260 262 4.202161 ACCTCCAGATTGCGTGTATCTAAG 60.202 45.833 0.00 0.00 31.32 2.18
262 264 3.296854 ACCTCCAGATTGCGTGTATCTA 58.703 45.455 0.00 0.00 31.32 1.98
266 268 2.851263 AAACCTCCAGATTGCGTGTA 57.149 45.000 0.00 0.00 0.00 2.90
268 270 4.701956 AATAAAACCTCCAGATTGCGTG 57.298 40.909 0.00 0.00 0.00 5.34
271 273 6.095377 CAGTGAAATAAAACCTCCAGATTGC 58.905 40.000 0.00 0.00 0.00 3.56
278 280 7.093945 TGGATAAAGCAGTGAAATAAAACCTCC 60.094 37.037 0.00 0.00 0.00 4.30
279 281 7.755373 GTGGATAAAGCAGTGAAATAAAACCTC 59.245 37.037 0.00 0.00 0.00 3.85
283 285 7.946207 TGTGTGGATAAAGCAGTGAAATAAAA 58.054 30.769 0.00 0.00 0.00 1.52
331 346 8.809066 AGGGAAACGCCTTAACTTTTATTTTAT 58.191 29.630 0.00 0.00 36.66 1.40
332 347 8.180706 AGGGAAACGCCTTAACTTTTATTTTA 57.819 30.769 0.00 0.00 36.66 1.52
337 352 4.888823 ACAAGGGAAACGCCTTAACTTTTA 59.111 37.500 0.00 0.00 36.66 1.52
343 358 3.775261 AGTACAAGGGAAACGCCTTAA 57.225 42.857 0.00 0.00 36.66 1.85
348 363 2.074576 GAGGAAGTACAAGGGAAACGC 58.925 52.381 0.00 0.00 0.00 4.84
362 377 5.446875 GCGGAGTAAATAAAAACGGAGGAAG 60.447 44.000 0.00 0.00 0.00 3.46
363 378 4.392754 GCGGAGTAAATAAAAACGGAGGAA 59.607 41.667 0.00 0.00 0.00 3.36
364 379 3.934579 GCGGAGTAAATAAAAACGGAGGA 59.065 43.478 0.00 0.00 0.00 3.71
365 380 3.685756 TGCGGAGTAAATAAAAACGGAGG 59.314 43.478 0.00 0.00 0.00 4.30
366 381 4.932268 TGCGGAGTAAATAAAAACGGAG 57.068 40.909 0.00 0.00 0.00 4.63
367 382 7.556733 AATATGCGGAGTAAATAAAAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
368 383 8.767085 TCTAATATGCGGAGTAAATAAAAACGG 58.233 33.333 0.00 0.00 0.00 4.44
369 384 9.793245 CTCTAATATGCGGAGTAAATAAAAACG 57.207 33.333 0.00 0.00 0.00 3.60
373 388 9.268268 CCAACTCTAATATGCGGAGTAAATAAA 57.732 33.333 6.10 0.00 39.09 1.40
374 389 7.386848 GCCAACTCTAATATGCGGAGTAAATAA 59.613 37.037 6.10 0.00 39.09 1.40
375 390 6.872020 GCCAACTCTAATATGCGGAGTAAATA 59.128 38.462 6.10 0.00 39.09 1.40
376 391 5.701290 GCCAACTCTAATATGCGGAGTAAAT 59.299 40.000 6.10 0.00 39.09 1.40
377 392 5.054477 GCCAACTCTAATATGCGGAGTAAA 58.946 41.667 6.10 0.00 39.09 2.01
378 393 4.344102 AGCCAACTCTAATATGCGGAGTAA 59.656 41.667 6.10 0.00 39.09 2.24
379 394 3.895656 AGCCAACTCTAATATGCGGAGTA 59.104 43.478 6.10 0.00 39.09 2.59
380 395 2.700897 AGCCAACTCTAATATGCGGAGT 59.299 45.455 0.00 0.00 41.37 3.85
381 396 3.062763 CAGCCAACTCTAATATGCGGAG 58.937 50.000 0.00 0.00 0.00 4.63
382 397 2.698274 TCAGCCAACTCTAATATGCGGA 59.302 45.455 0.00 0.00 0.00 5.54
383 398 3.111853 TCAGCCAACTCTAATATGCGG 57.888 47.619 0.00 0.00 0.00 5.69
384 399 4.122776 ACTTCAGCCAACTCTAATATGCG 58.877 43.478 0.00 0.00 0.00 4.73
385 400 5.118990 TGACTTCAGCCAACTCTAATATGC 58.881 41.667 0.00 0.00 0.00 3.14
386 401 7.615582 TTTGACTTCAGCCAACTCTAATATG 57.384 36.000 0.00 0.00 0.00 1.78
387 402 8.814038 AATTTGACTTCAGCCAACTCTAATAT 57.186 30.769 0.00 0.00 0.00 1.28
388 403 8.635765 AAATTTGACTTCAGCCAACTCTAATA 57.364 30.769 0.00 0.00 0.00 0.98
389 404 7.530426 AAATTTGACTTCAGCCAACTCTAAT 57.470 32.000 0.00 0.00 0.00 1.73
390 405 6.959639 AAATTTGACTTCAGCCAACTCTAA 57.040 33.333 0.00 0.00 0.00 2.10
391 406 8.635765 AATAAATTTGACTTCAGCCAACTCTA 57.364 30.769 0.00 0.00 0.00 2.43
392 407 7.530426 AATAAATTTGACTTCAGCCAACTCT 57.470 32.000 0.00 0.00 0.00 3.24
393 408 9.691362 TTTAATAAATTTGACTTCAGCCAACTC 57.309 29.630 0.00 0.00 0.00 3.01
467 482 9.201989 ACTGAATGTACTTCCACTTCATATAGA 57.798 33.333 0.00 0.00 32.49 1.98
538 553 9.730420 GTCAAGCTGAAAAAGTTTATAGACAAA 57.270 29.630 0.00 0.00 0.00 2.83
539 554 9.120538 AGTCAAGCTGAAAAAGTTTATAGACAA 57.879 29.630 0.00 0.00 28.15 3.18
540 555 8.677148 AGTCAAGCTGAAAAAGTTTATAGACA 57.323 30.769 0.00 0.00 28.15 3.41
541 556 9.952188 AAAGTCAAGCTGAAAAAGTTTATAGAC 57.048 29.630 0.00 0.00 0.00 2.59
542 557 9.950680 CAAAGTCAAGCTGAAAAAGTTTATAGA 57.049 29.630 0.00 0.00 0.00 1.98
543 558 9.950680 TCAAAGTCAAGCTGAAAAAGTTTATAG 57.049 29.630 0.00 0.00 0.00 1.31
544 559 9.730420 GTCAAAGTCAAGCTGAAAAAGTTTATA 57.270 29.630 0.00 0.00 0.00 0.98
545 560 7.706607 GGTCAAAGTCAAGCTGAAAAAGTTTAT 59.293 33.333 0.00 0.00 0.00 1.40
546 561 7.033185 GGTCAAAGTCAAGCTGAAAAAGTTTA 58.967 34.615 0.00 0.00 0.00 2.01
547 562 5.869344 GGTCAAAGTCAAGCTGAAAAAGTTT 59.131 36.000 0.00 0.00 0.00 2.66
548 563 5.047377 TGGTCAAAGTCAAGCTGAAAAAGTT 60.047 36.000 0.00 0.00 0.00 2.66
549 564 4.462483 TGGTCAAAGTCAAGCTGAAAAAGT 59.538 37.500 0.00 0.00 0.00 2.66
550 565 4.997565 TGGTCAAAGTCAAGCTGAAAAAG 58.002 39.130 0.00 0.00 0.00 2.27
551 566 5.398603 TTGGTCAAAGTCAAGCTGAAAAA 57.601 34.783 0.00 0.00 0.00 1.94
552 567 5.167845 GTTTGGTCAAAGTCAAGCTGAAAA 58.832 37.500 0.00 0.00 0.00 2.29
553 568 4.381505 GGTTTGGTCAAAGTCAAGCTGAAA 60.382 41.667 0.00 0.00 0.00 2.69
554 569 3.130340 GGTTTGGTCAAAGTCAAGCTGAA 59.870 43.478 0.00 0.00 0.00 3.02
555 570 2.687935 GGTTTGGTCAAAGTCAAGCTGA 59.312 45.455 0.00 0.00 0.00 4.26
556 571 2.689983 AGGTTTGGTCAAAGTCAAGCTG 59.310 45.455 0.00 0.00 0.00 4.24
557 572 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
558 573 4.911514 TTAGGTTTGGTCAAAGTCAAGC 57.088 40.909 0.00 0.00 0.00 4.01
559 574 6.599437 CGTATTAGGTTTGGTCAAAGTCAAG 58.401 40.000 0.00 0.00 0.00 3.02
560 575 5.049267 GCGTATTAGGTTTGGTCAAAGTCAA 60.049 40.000 0.00 0.00 0.00 3.18
561 576 4.453136 GCGTATTAGGTTTGGTCAAAGTCA 59.547 41.667 0.00 0.00 0.00 3.41
562 577 4.435121 CGCGTATTAGGTTTGGTCAAAGTC 60.435 45.833 0.00 0.00 0.00 3.01
563 578 3.434299 CGCGTATTAGGTTTGGTCAAAGT 59.566 43.478 0.00 0.00 0.00 2.66
564 579 3.181514 CCGCGTATTAGGTTTGGTCAAAG 60.182 47.826 4.92 0.00 0.00 2.77
565 580 2.743126 CCGCGTATTAGGTTTGGTCAAA 59.257 45.455 4.92 0.00 0.00 2.69
566 581 2.028294 TCCGCGTATTAGGTTTGGTCAA 60.028 45.455 4.92 0.00 0.00 3.18
567 582 1.549620 TCCGCGTATTAGGTTTGGTCA 59.450 47.619 4.92 0.00 0.00 4.02
568 583 2.199236 CTCCGCGTATTAGGTTTGGTC 58.801 52.381 4.92 0.00 0.00 4.02
569 584 1.551883 ACTCCGCGTATTAGGTTTGGT 59.448 47.619 4.92 0.00 0.00 3.67
570 585 2.304751 ACTCCGCGTATTAGGTTTGG 57.695 50.000 4.92 0.00 0.00 3.28
571 586 5.783100 TTTTACTCCGCGTATTAGGTTTG 57.217 39.130 4.92 0.00 0.00 2.93
593 608 6.183360 CCAACAGACATACTCCCTTTGTTTTT 60.183 38.462 0.00 0.00 0.00 1.94
594 609 5.301805 CCAACAGACATACTCCCTTTGTTTT 59.698 40.000 0.00 0.00 0.00 2.43
595 610 4.827284 CCAACAGACATACTCCCTTTGTTT 59.173 41.667 0.00 0.00 0.00 2.83
596 611 4.398319 CCAACAGACATACTCCCTTTGTT 58.602 43.478 0.00 0.00 0.00 2.83
597 612 3.810743 GCCAACAGACATACTCCCTTTGT 60.811 47.826 0.00 0.00 0.00 2.83
598 613 2.749621 GCCAACAGACATACTCCCTTTG 59.250 50.000 0.00 0.00 0.00 2.77
599 614 2.644798 AGCCAACAGACATACTCCCTTT 59.355 45.455 0.00 0.00 0.00 3.11
600 615 2.269940 AGCCAACAGACATACTCCCTT 58.730 47.619 0.00 0.00 0.00 3.95
601 616 1.958288 AGCCAACAGACATACTCCCT 58.042 50.000 0.00 0.00 0.00 4.20
602 617 2.483889 GCTAGCCAACAGACATACTCCC 60.484 54.545 2.29 0.00 0.00 4.30
603 618 2.432510 AGCTAGCCAACAGACATACTCC 59.567 50.000 12.13 0.00 0.00 3.85
604 619 3.810310 AGCTAGCCAACAGACATACTC 57.190 47.619 12.13 0.00 0.00 2.59
605 620 4.442192 GCTTAGCTAGCCAACAGACATACT 60.442 45.833 12.13 0.00 44.48 2.12
628 652 6.795399 TCTTTGTGCTTAAGGTTTCTCTTTG 58.205 36.000 4.29 0.00 0.00 2.77
671 696 9.323985 TGGATATTTTTCTCAACTTTGTTTTGG 57.676 29.630 0.00 0.00 0.00 3.28
677 702 8.306038 TCCATGTGGATATTTTTCTCAACTTTG 58.694 33.333 0.00 0.00 39.78 2.77
682 707 8.087750 GTGTTTCCATGTGGATATTTTTCTCAA 58.912 33.333 1.98 0.00 44.98 3.02
683 708 7.309744 GGTGTTTCCATGTGGATATTTTTCTCA 60.310 37.037 1.98 0.00 44.98 3.27
684 709 7.035612 GGTGTTTCCATGTGGATATTTTTCTC 58.964 38.462 1.98 0.00 44.98 2.87
685 710 6.496565 TGGTGTTTCCATGTGGATATTTTTCT 59.503 34.615 1.98 0.00 44.98 2.52
698 724 6.222389 TGCTTATTTTCTTGGTGTTTCCATG 58.778 36.000 0.00 0.00 46.60 3.66
700 726 5.596361 TCTGCTTATTTTCTTGGTGTTTCCA 59.404 36.000 0.00 0.00 45.60 3.53
701 727 6.084326 TCTGCTTATTTTCTTGGTGTTTCC 57.916 37.500 0.00 0.00 0.00 3.13
744 772 0.725117 CAAAGTGTCGCCGGATTACC 59.275 55.000 5.05 0.00 0.00 2.85
1213 1260 2.737665 GAAACAAACGCGACCGGACG 62.738 60.000 22.02 22.02 39.22 4.79
1233 1280 0.671251 CTCCGCACCTAGATGGACTC 59.329 60.000 0.00 0.00 39.71 3.36
1257 1304 1.389784 CGGCGCATTTCCAAACAAATC 59.610 47.619 10.83 0.00 0.00 2.17
1260 1307 0.600557 ATCGGCGCATTTCCAAACAA 59.399 45.000 10.83 0.00 0.00 2.83
1263 1310 0.600557 ACAATCGGCGCATTTCCAAA 59.399 45.000 10.83 0.00 0.00 3.28
1288 1336 4.581824 GCTTTTCCCATGCTAATCATCTCA 59.418 41.667 0.00 0.00 31.79 3.27
1299 1347 1.446618 CCAAGCGCTTTTCCCATGC 60.447 57.895 22.51 0.00 0.00 4.06
1319 1391 1.528309 AAACAACAGGGGCCGTCTG 60.528 57.895 19.35 19.35 38.16 3.51
1329 1401 4.414852 CAACTCACAAGGACAAACAACAG 58.585 43.478 0.00 0.00 0.00 3.16
1342 1414 1.474320 CCTGTTCCGTCCAACTCACAA 60.474 52.381 0.00 0.00 0.00 3.33
1376 1450 1.962807 CCAAATTGTGCAGAACCTGGA 59.037 47.619 16.81 0.00 31.21 3.86
1404 1479 3.287867 AGGATCATGAATTTCCGCTGT 57.712 42.857 0.00 0.00 34.61 4.40
1441 1518 6.042638 TCATTCAGTAAGTTCTCCTCTTGG 57.957 41.667 0.00 0.00 0.00 3.61
1554 1631 1.136329 AGCAGAGCAAAGAAGGGGGA 61.136 55.000 0.00 0.00 0.00 4.81
1566 1644 0.249398 TTTCCGTCCCTAAGCAGAGC 59.751 55.000 0.00 0.00 0.00 4.09
1567 1645 2.555199 CATTTCCGTCCCTAAGCAGAG 58.445 52.381 0.00 0.00 0.00 3.35
1600 1678 8.337190 ACTAACAATTAGTGGGTGGGACAACA 62.337 42.308 0.46 0.00 45.29 3.33
1601 1679 5.979708 ACTAACAATTAGTGGGTGGGACAAC 60.980 44.000 0.46 0.00 44.43 3.32
1623 1701 8.371699 AGCTTTGTAATCTCTTTAACTCAGACT 58.628 33.333 0.00 0.00 0.00 3.24
1665 1743 3.004752 TGAAGCTAAAGCATTCCCCTC 57.995 47.619 4.54 0.00 45.16 4.30
1700 1778 4.794278 ACTTGACAAAAACGTTTTCCCT 57.206 36.364 25.37 8.62 0.00 4.20
1790 1868 3.983344 GTGCAAGGTAAACAAAGCAGATG 59.017 43.478 0.00 0.00 32.03 2.90
1847 1925 3.696051 TCAAGAAAGCCTCCATAATGCAC 59.304 43.478 0.00 0.00 0.00 4.57
1861 1939 5.817816 ACTACTGAAACAGGTGTCAAGAAAG 59.182 40.000 0.00 0.00 35.51 2.62
1872 1950 4.002906 TGCTGGTAACTACTGAAACAGG 57.997 45.455 0.00 0.00 34.38 4.00
1938 2016 5.964958 TGATTCCACAAAAATGAGACTCC 57.035 39.130 0.00 0.00 0.00 3.85
2053 2131 9.601217 AAGCGAATATAATATCACCATAAGACC 57.399 33.333 0.00 0.00 0.00 3.85
2064 2142 9.291664 GTCACTACTGGAAGCGAATATAATATC 57.708 37.037 0.00 0.00 37.60 1.63
2143 2221 0.183492 TTTCAGTGGCAGCTTCCTGT 59.817 50.000 3.45 0.00 41.26 4.00
2166 2244 9.825972 CAATTACTCGAATAATGTCAAAACAGT 57.174 29.630 0.00 0.00 39.20 3.55
2513 2591 5.769662 TGAATTTTTAGTCCACACTGAGCAT 59.230 36.000 0.00 0.00 33.62 3.79
2639 2726 9.609346 GTATGTTAATAAGTACCCAGACAACAT 57.391 33.333 11.60 11.60 37.69 2.71
2738 2825 7.201821 GGCTAGCCAACACTTCAACATATTAAT 60.202 37.037 29.33 0.00 35.81 1.40
2833 2920 7.160049 TGCATTAATTTTGCAAGGATGAGAAA 58.840 30.769 11.95 0.00 46.48 2.52
2964 3054 6.296026 TGACATAAAATACATGGGTAGGAGC 58.704 40.000 0.00 0.00 31.88 4.70
3080 3171 8.918202 TCCAGTCAACTGTAGAAAATACAATT 57.082 30.769 9.19 0.00 42.27 2.32
3246 3337 8.964420 TCAGCGGAAGTTTAAAATGATAAAAG 57.036 30.769 0.00 0.00 0.00 2.27
3442 3533 6.069088 AGGATGATGGGTTACTTCCAAACATA 60.069 38.462 0.00 0.00 37.87 2.29
3640 3732 3.122948 CACGTCAGCCAAATGTACAGTAC 59.877 47.826 0.33 3.49 0.00 2.73
3656 3748 4.884668 AGAGAATAAAGGGTTCACGTCA 57.115 40.909 0.00 0.00 0.00 4.35
3705 3797 0.035739 TTGGTAAAGGGGTCAGCGTC 59.964 55.000 0.00 0.00 0.00 5.19
3793 3886 9.418045 GCAGATAAAAGTTTACTGCCAATTTAA 57.582 29.630 21.28 0.00 39.31 1.52
3794 3887 8.802267 AGCAGATAAAAGTTTACTGCCAATTTA 58.198 29.630 24.93 0.57 42.27 1.40
3795 3888 7.670364 AGCAGATAAAAGTTTACTGCCAATTT 58.330 30.769 24.93 12.82 42.27 1.82
3796 3889 7.232118 AGCAGATAAAAGTTTACTGCCAATT 57.768 32.000 24.93 13.06 42.27 2.32
3797 3890 6.840780 AGCAGATAAAAGTTTACTGCCAAT 57.159 33.333 24.93 13.30 42.27 3.16
3798 3891 6.648879 AAGCAGATAAAAGTTTACTGCCAA 57.351 33.333 24.93 0.00 42.27 4.52
3799 3892 6.264292 TGAAAGCAGATAAAAGTTTACTGCCA 59.736 34.615 24.93 18.09 42.27 4.92
3800 3893 6.677913 TGAAAGCAGATAAAAGTTTACTGCC 58.322 36.000 24.93 16.61 42.27 4.85
3801 3894 7.217070 CGATGAAAGCAGATAAAAGTTTACTGC 59.783 37.037 22.95 22.95 41.99 4.40
3802 3895 8.443160 TCGATGAAAGCAGATAAAAGTTTACTG 58.557 33.333 10.84 10.84 0.00 2.74
3803 3896 8.547967 TCGATGAAAGCAGATAAAAGTTTACT 57.452 30.769 0.00 0.00 0.00 2.24
3854 3947 6.334378 TCCAAGAACCAACCCATTATATCA 57.666 37.500 0.00 0.00 0.00 2.15
3951 4236 6.084326 GACAATGGGTCTGTGTTAACAAAT 57.916 37.500 10.51 0.00 43.46 2.32
4268 4685 7.067496 ACTACCTATCCATCAAATGTACAGG 57.933 40.000 0.33 0.00 0.00 4.00
4298 4715 5.499004 TTTGTACCCTTCAAGCTATCTGT 57.501 39.130 0.00 0.00 0.00 3.41
4334 4751 6.575267 GGAGAAGACCTAATCCAGTTAGTTC 58.425 44.000 0.00 0.00 38.50 3.01
4512 4930 3.251479 TCTCATCCAGAACACGGAATG 57.749 47.619 0.00 0.00 35.77 2.67
4513 4931 5.815233 ATATCTCATCCAGAACACGGAAT 57.185 39.130 0.00 0.00 35.77 3.01
4514 4932 6.724893 TTATATCTCATCCAGAACACGGAA 57.275 37.500 0.00 0.00 35.77 4.30
4517 4935 5.532557 TGCTTATATCTCATCCAGAACACG 58.467 41.667 0.00 0.00 33.62 4.49
4542 4960 5.163281 ACTCTTCTGACTGAAAGATGCAT 57.837 39.130 0.00 0.00 37.43 3.96
4543 4961 4.613925 ACTCTTCTGACTGAAAGATGCA 57.386 40.909 0.00 0.00 37.43 3.96
4568 4986 2.372264 ACATCTGGCGAGAAATGCAAT 58.628 42.857 1.37 0.00 0.00 3.56
4587 5005 5.568296 GTGAACTCACGACTACTGACATAAC 59.432 44.000 0.00 0.00 37.10 1.89
4697 5116 1.818674 GGATTTGGGTGTGCTTGTAGG 59.181 52.381 0.00 0.00 0.00 3.18
4698 5117 2.228822 GTGGATTTGGGTGTGCTTGTAG 59.771 50.000 0.00 0.00 0.00 2.74
4699 5118 2.235016 GTGGATTTGGGTGTGCTTGTA 58.765 47.619 0.00 0.00 0.00 2.41
4701 5120 1.039068 TGTGGATTTGGGTGTGCTTG 58.961 50.000 0.00 0.00 0.00 4.01
4702 5121 1.786937 TTGTGGATTTGGGTGTGCTT 58.213 45.000 0.00 0.00 0.00 3.91
4703 5122 1.786937 TTTGTGGATTTGGGTGTGCT 58.213 45.000 0.00 0.00 0.00 4.40
4704 5123 2.611225 TTTTGTGGATTTGGGTGTGC 57.389 45.000 0.00 0.00 0.00 4.57
4705 5124 4.399004 TCTTTTTGTGGATTTGGGTGTG 57.601 40.909 0.00 0.00 0.00 3.82
4706 5125 4.223923 TGTTCTTTTTGTGGATTTGGGTGT 59.776 37.500 0.00 0.00 0.00 4.16
4707 5126 4.764172 TGTTCTTTTTGTGGATTTGGGTG 58.236 39.130 0.00 0.00 0.00 4.61
4708 5127 5.428184 TTGTTCTTTTTGTGGATTTGGGT 57.572 34.783 0.00 0.00 0.00 4.51
4709 5128 6.749923 TTTTGTTCTTTTTGTGGATTTGGG 57.250 33.333 0.00 0.00 0.00 4.12
4731 5150 4.402474 CCAGTTTCTGTGGGTTCTCTTTTT 59.598 41.667 0.00 0.00 0.00 1.94
4736 5155 1.239347 GCCAGTTTCTGTGGGTTCTC 58.761 55.000 0.00 0.00 35.39 2.87
4738 5157 0.668535 GTGCCAGTTTCTGTGGGTTC 59.331 55.000 0.00 0.00 35.39 3.62
4740 5159 0.185901 ATGTGCCAGTTTCTGTGGGT 59.814 50.000 0.00 0.00 35.39 4.51
4759 5178 2.439135 TGCCCTCATAAGCTTCTGCATA 59.561 45.455 0.00 0.00 42.74 3.14
4867 5286 3.535629 CTTCTGTCCAGGCCGCACA 62.536 63.158 0.00 0.03 0.00 4.57
4917 5336 4.164030 TCTCAGGATAAACAGCCTATGCAA 59.836 41.667 0.00 0.00 41.13 4.08
4936 5355 2.306805 AGGTCCATGTCAAGCATTCTCA 59.693 45.455 0.00 0.00 35.19 3.27
5001 5420 7.070821 TCCAGGTTAAGAGAAAAACTAGTCAGT 59.929 37.037 0.00 0.00 36.19 3.41
5002 5421 7.385478 GTCCAGGTTAAGAGAAAAACTAGTCAG 59.615 40.741 0.00 0.00 0.00 3.51
5003 5422 7.070821 AGTCCAGGTTAAGAGAAAAACTAGTCA 59.929 37.037 0.00 0.00 0.00 3.41
5004 5423 7.385478 CAGTCCAGGTTAAGAGAAAAACTAGTC 59.615 40.741 0.00 0.00 0.00 2.59
5059 5482 7.686434 ACAAGGTATATAACACCAGTGAACTT 58.314 34.615 4.48 0.00 38.62 2.66
5066 5489 9.273016 CCATCTAAACAAGGTATATAACACCAG 57.727 37.037 0.00 4.50 38.62 4.00
5094 5517 7.360946 GGCATTGAGTAACTAATTTCGAGTTGT 60.361 37.037 2.90 0.00 37.68 3.32
5151 5574 6.092092 TCAAACAACAATGTCAAACACTCAG 58.908 36.000 0.00 0.00 39.40 3.35
5152 5575 6.018589 TCAAACAACAATGTCAAACACTCA 57.981 33.333 0.00 0.00 39.40 3.41
5198 5625 5.934625 CAGTCAGGTAAACATTAACTCAGCT 59.065 40.000 0.00 0.00 0.00 4.24
5571 6001 1.204704 TCATCCACGTTAGGCAGTGAG 59.795 52.381 0.00 0.00 40.56 3.51
5679 6109 2.295909 TGGAAGTTTACCAGCAACATGC 59.704 45.455 0.00 0.00 45.46 4.06
5703 6133 3.740115 TGTAAGACAAGAGAACCCAAGC 58.260 45.455 0.00 0.00 0.00 4.01
5951 6381 8.813951 TGCTCTCTGATCATATCTATGTTGAAT 58.186 33.333 0.00 0.00 35.26 2.57
6057 6487 6.703607 ACGGCTCAAACTGATATCAGATAAAG 59.296 38.462 34.16 24.48 46.59 1.85
6080 6510 4.166523 TCGAAACTCATAAGCAGAAGACG 58.833 43.478 0.00 0.00 0.00 4.18
6272 6903 2.038952 ACAATGAGTTAGCTGACAGCCA 59.961 45.455 23.74 14.20 43.77 4.75
6294 6925 1.726853 ACTAGCCAGATTGCGTTGAC 58.273 50.000 0.00 0.00 36.02 3.18
6613 7246 4.202202 CCCAACTCTACCACAGATGAGATC 60.202 50.000 0.00 0.00 31.13 2.75
6705 7341 5.431765 AGAACATGAAGAGAACACAGTTGT 58.568 37.500 0.00 0.00 37.67 3.32
6739 7375 7.465781 GCGTTTTAATAATTACTAGGCCGAACA 60.466 37.037 0.00 0.00 0.00 3.18
6765 7401 3.357079 GGCCGTGTTGCAGGTCTG 61.357 66.667 0.00 0.00 0.00 3.51
6766 7402 4.988598 CGGCCGTGTTGCAGGTCT 62.989 66.667 19.50 0.00 0.00 3.85
6887 7645 3.495377 TCACACGTACCTTAACATTGTGC 59.505 43.478 0.00 0.00 34.92 4.57
6903 7661 0.583438 CACCACAGAAGCTTCACACG 59.417 55.000 27.57 14.95 0.00 4.49
6906 7664 4.154918 CCTTAATCACCACAGAAGCTTCAC 59.845 45.833 27.57 2.86 0.00 3.18
6925 7683 7.012894 CACACAATCTGAAACCTTAACACCTTA 59.987 37.037 0.00 0.00 0.00 2.69
6926 7684 5.891551 ACACAATCTGAAACCTTAACACCTT 59.108 36.000 0.00 0.00 0.00 3.50
6941 7734 7.582435 AATTCGTTAGTCTACACACAATCTG 57.418 36.000 0.00 0.00 0.00 2.90
6942 7735 9.355215 CTAAATTCGTTAGTCTACACACAATCT 57.645 33.333 0.00 0.00 35.40 2.40
6943 7736 8.108782 GCTAAATTCGTTAGTCTACACACAATC 58.891 37.037 0.00 0.00 41.28 2.67
6944 7737 7.817962 AGCTAAATTCGTTAGTCTACACACAAT 59.182 33.333 0.00 0.00 41.28 2.71
6945 7738 7.149973 AGCTAAATTCGTTAGTCTACACACAA 58.850 34.615 0.00 0.00 41.28 3.33
6949 7742 7.166142 CAGCTAGCTAAATTCGTTAGTCTACAC 59.834 40.741 18.86 0.00 41.28 2.90
6951 7744 7.416022 TCAGCTAGCTAAATTCGTTAGTCTAC 58.584 38.462 18.86 0.00 41.28 2.59
6954 7747 7.142680 AGATCAGCTAGCTAAATTCGTTAGTC 58.857 38.462 18.86 0.00 41.28 2.59
6955 7748 7.013846 AGAGATCAGCTAGCTAAATTCGTTAGT 59.986 37.037 18.86 0.00 41.28 2.24
6956 7749 7.367285 AGAGATCAGCTAGCTAAATTCGTTAG 58.633 38.462 18.86 0.52 42.01 2.34
6977 7776 2.355412 CCACATGGACATGCTCAAGAGA 60.355 50.000 11.96 0.00 42.39 3.10
6983 7782 1.303309 GCTACCACATGGACATGCTC 58.697 55.000 11.96 0.00 42.39 4.26
7002 7801 3.176708 CAAGTAATACTCACGGTCACGG 58.823 50.000 0.00 0.00 46.48 4.94
7006 7805 2.190981 CGCCAAGTAATACTCACGGTC 58.809 52.381 0.00 0.00 0.00 4.79
7058 7969 5.643379 TCAGGCAGAAATTAACCATTCAC 57.357 39.130 0.00 0.00 0.00 3.18
7138 8059 1.467035 CGGTCTAAGTTTCGGACGGAG 60.467 57.143 0.00 0.00 33.94 4.63
7140 8061 0.457337 CCGGTCTAAGTTTCGGACGG 60.457 60.000 0.00 0.00 44.69 4.79
7145 8066 1.792006 AGCAACCGGTCTAAGTTTCG 58.208 50.000 8.04 0.00 0.00 3.46
7150 8071 5.221461 ACCATATCTTAGCAACCGGTCTAAG 60.221 44.000 26.29 26.29 41.74 2.18
7152 8073 4.220724 ACCATATCTTAGCAACCGGTCTA 58.779 43.478 8.04 2.57 0.00 2.59
7153 8074 3.039011 ACCATATCTTAGCAACCGGTCT 58.961 45.455 8.04 3.81 0.00 3.85
7155 8076 6.640518 CATATACCATATCTTAGCAACCGGT 58.359 40.000 0.00 0.00 0.00 5.28
7156 8077 5.523916 GCATATACCATATCTTAGCAACCGG 59.476 44.000 0.00 0.00 0.00 5.28
7307 9189 4.566360 GCAACAAAACACTAACAAGCATGT 59.434 37.500 0.00 0.00 43.14 3.21
7326 9208 2.438868 AGGAAGCAAAAATCCGCAAC 57.561 45.000 0.00 0.00 40.78 4.17
7329 9211 3.782889 ACATAGGAAGCAAAAATCCGC 57.217 42.857 0.00 0.00 40.78 5.54
7439 9322 5.815740 AGCCTTTATGTACAGAATACAACCG 59.184 40.000 3.34 0.00 0.00 4.44
7445 9328 7.047891 CCAAGACAGCCTTTATGTACAGAATA 58.952 38.462 3.34 0.00 31.42 1.75
7459 9342 4.851639 ATTACATCTTCCAAGACAGCCT 57.148 40.909 0.00 0.00 37.98 4.58
7462 9345 4.728882 GCGCAATTACATCTTCCAAGACAG 60.729 45.833 0.30 0.00 37.98 3.51
7470 9353 3.283256 CGATGTGCGCAATTACATCTTC 58.717 45.455 26.46 14.30 46.82 2.87
7478 9361 1.810151 ACTTAACCGATGTGCGCAATT 59.190 42.857 14.00 1.09 39.11 2.32
7480 9363 1.069568 CAACTTAACCGATGTGCGCAA 60.070 47.619 14.00 2.60 39.11 4.85
7481 9364 0.515127 CAACTTAACCGATGTGCGCA 59.485 50.000 5.66 5.66 39.11 6.09
7482 9365 0.515564 ACAACTTAACCGATGTGCGC 59.484 50.000 0.00 0.00 39.11 6.09
7483 9366 2.226262 CACAACTTAACCGATGTGCG 57.774 50.000 0.00 0.00 37.03 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.