Multiple sequence alignment - TraesCS4A01G257500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G257500 chr4A 100.000 3284 0 0 1 3284 570270961 570267678 0.000000e+00 6065
1 TraesCS4A01G257500 chr4D 91.893 2245 129 32 651 2870 32348256 32350472 0.000000e+00 3088
2 TraesCS4A01G257500 chr4D 91.298 655 45 8 2 651 32347539 32348186 0.000000e+00 883
3 TraesCS4A01G257500 chr4D 88.081 344 28 9 2869 3204 32350512 32350850 2.370000e-106 396
4 TraesCS4A01G257500 chr4B 89.563 2405 156 49 663 3039 46940020 46942357 0.000000e+00 2963
5 TraesCS4A01G257500 chr4B 94.351 655 29 5 10 657 46939298 46939951 0.000000e+00 998


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G257500 chr4A 570267678 570270961 3283 True 6065.000000 6065 100.000 1 3284 1 chr4A.!!$R1 3283
1 TraesCS4A01G257500 chr4D 32347539 32350850 3311 False 1455.666667 3088 90.424 2 3204 3 chr4D.!!$F1 3202
2 TraesCS4A01G257500 chr4B 46939298 46942357 3059 False 1980.500000 2963 91.957 10 3039 2 chr4B.!!$F1 3029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 990 0.757561 TGGGTGTTCAGTGTCGAGGA 60.758 55.0 0.0 0.0 0.00 3.71 F
1341 1424 0.107456 AGCATGATGACGACCCCATC 59.893 55.0 0.0 0.0 40.48 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 2026 0.181114 TGTCCCTGATACAGCATGGC 59.819 55.0 0.0 0.0 43.62 4.40 R
2567 2657 0.245813 TGCAAGCAAGCACAACAACA 59.754 45.0 0.0 0.0 40.11 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 201 2.856628 TTCGTGCTGCTGAGGTCGT 61.857 57.895 0.00 0.00 0.00 4.34
199 202 2.749110 TTCGTGCTGCTGAGGTCGTC 62.749 60.000 0.00 0.00 0.00 4.20
200 203 2.807045 GTGCTGCTGAGGTCGTCG 60.807 66.667 0.00 0.00 0.00 5.12
222 228 3.284449 GTTGGTGTGCGGTGGTCC 61.284 66.667 0.00 0.00 0.00 4.46
261 267 1.276138 GTTTCTTGCCTGGATTTGGGG 59.724 52.381 0.00 0.00 0.00 4.96
290 296 3.388024 TCCCTACACTTAGGCTATGCTTG 59.612 47.826 7.29 2.60 43.56 4.01
293 299 4.811557 CCTACACTTAGGCTATGCTTGTTC 59.188 45.833 7.29 0.00 38.72 3.18
327 333 2.039746 TCCCCGAAGCTCAAATCTTTCA 59.960 45.455 0.00 0.00 0.00 2.69
382 388 5.300539 GTGATTAGAGTCCTCACATGCTCTA 59.699 44.000 11.31 0.00 39.24 2.43
385 391 4.935352 AGAGTCCTCACATGCTCTATTC 57.065 45.455 0.00 0.00 36.65 1.75
398 404 3.696051 TGCTCTATTCAGGCCATTTCAAC 59.304 43.478 5.01 0.00 0.00 3.18
455 463 1.847798 AAATGGGTGTAGAGGCGGCA 61.848 55.000 13.08 0.00 0.00 5.69
534 542 3.938963 CGTTGATTAGTGCTATGTTGGGT 59.061 43.478 0.00 0.00 0.00 4.51
652 732 2.040947 TGGTACACATGGCTTGATTGGA 59.959 45.455 7.45 0.00 0.00 3.53
659 739 0.991146 TGGCTTGATTGGAGGTAGCA 59.009 50.000 0.00 0.00 33.60 3.49
661 741 1.745653 GGCTTGATTGGAGGTAGCAAC 59.254 52.381 0.00 0.00 33.60 4.17
688 768 1.227823 TTCTGCGTTGGAGGTGGTG 60.228 57.895 0.00 0.00 0.00 4.17
708 788 4.095483 GGTGGTTCAGATCTAAACTGCATG 59.905 45.833 8.66 0.00 35.61 4.06
797 877 4.974275 CAGTTCTTTGCTTGTGACAAGATG 59.026 41.667 27.97 13.61 0.00 2.90
910 990 0.757561 TGGGTGTTCAGTGTCGAGGA 60.758 55.000 0.00 0.00 0.00 3.71
915 995 2.926200 GTGTTCAGTGTCGAGGATGATG 59.074 50.000 0.00 0.00 0.00 3.07
921 1001 4.827284 TCAGTGTCGAGGATGATGCTTATA 59.173 41.667 0.00 0.00 0.00 0.98
1142 1225 4.226113 ACGAGAAGAAGACGGCATATAC 57.774 45.455 0.00 0.00 0.00 1.47
1162 1245 8.795513 CATATACTGAAAATGATGCCACCAATA 58.204 33.333 0.00 0.00 0.00 1.90
1171 1254 0.250945 TGCCACCAATAACGAAGCCA 60.251 50.000 0.00 0.00 0.00 4.75
1202 1285 2.345124 AAAGATGATCAGAGCCAGGC 57.655 50.000 1.84 1.84 0.00 4.85
1341 1424 0.107456 AGCATGATGACGACCCCATC 59.893 55.000 0.00 0.00 40.48 3.51
1473 1556 1.108727 AGCGCTCTCAGGAGGATCAG 61.109 60.000 2.64 0.00 39.80 2.90
1494 1577 3.008485 AGGAGAAGAGTTTCCATGGTGAC 59.992 47.826 12.58 11.57 35.88 3.67
1528 1611 0.611200 TGTAACACATGACCCTCCGG 59.389 55.000 0.00 0.00 0.00 5.14
1544 1627 2.175621 CGGCATCGCAGCAAGATGA 61.176 57.895 16.72 0.00 46.09 2.92
1655 1738 0.179034 GAGGAAGATCGCAAGGCCAT 60.179 55.000 5.01 0.00 38.47 4.40
1674 1757 1.270907 TGGAGAAGAGTTCTGGAGGC 58.729 55.000 0.00 0.00 40.87 4.70
1686 1769 0.803768 CTGGAGGCGAGAATGTGTCG 60.804 60.000 0.00 0.00 40.50 4.35
1807 1890 0.185175 AATTACATTCCGGGGCCCTC 59.815 55.000 24.38 11.27 0.00 4.30
1830 1913 3.233507 AGTGAATGGAACCAATGCTGTT 58.766 40.909 0.00 0.00 0.00 3.16
1842 1925 1.459812 TGCTGTTGGGGAGCATGAA 59.540 52.632 0.00 0.00 41.56 2.57
1866 1949 6.985117 AGCTTCTTCAAAAACTAATGCATCA 58.015 32.000 0.00 0.00 0.00 3.07
1870 1953 6.554419 TCTTCAAAAACTAATGCATCATCCG 58.446 36.000 0.00 0.00 0.00 4.18
1943 2026 4.511527 ACTCCAGTGAATATGACAAGCAG 58.488 43.478 0.00 0.00 0.00 4.24
2004 2087 0.520404 GTCAACATGAGCAGCCAGTG 59.480 55.000 0.00 0.00 0.00 3.66
2033 2116 0.248296 GCAGCGTCGAACAACCAAAA 60.248 50.000 0.00 0.00 0.00 2.44
2055 2138 3.235200 ACAACTCTTAGCTGACCTGACT 58.765 45.455 0.00 0.00 0.00 3.41
2058 2141 3.773560 ACTCTTAGCTGACCTGACTTCT 58.226 45.455 0.00 0.00 0.00 2.85
2061 2144 1.930251 TAGCTGACCTGACTTCTGCT 58.070 50.000 0.00 8.51 46.45 4.24
2097 2183 0.321564 CGAATGGGACTGTGGCTTCA 60.322 55.000 0.00 0.00 0.00 3.02
2106 2192 1.212935 ACTGTGGCTTCAGGTTCAACT 59.787 47.619 12.94 0.00 39.48 3.16
2111 2197 2.106338 TGGCTTCAGGTTCAACTGATGA 59.894 45.455 11.06 1.75 46.07 2.92
2136 2222 2.187946 GCCACATCCAGAGACGGG 59.812 66.667 0.00 0.00 0.00 5.28
2144 2230 1.450312 CCAGAGACGGGGACAATGC 60.450 63.158 0.00 0.00 0.00 3.56
2196 2282 3.335579 GGTGAGCAATAAAGAAGACGGT 58.664 45.455 0.00 0.00 0.00 4.83
2200 2286 1.810151 GCAATAAAGAAGACGGTGGCA 59.190 47.619 0.00 0.00 0.00 4.92
2214 2300 3.184683 GGCAGCGACGCTCAGAAG 61.185 66.667 21.67 9.72 36.40 2.85
2312 2398 0.532573 TCTCCTGTTAGCCGCTTCTG 59.467 55.000 0.00 0.00 0.00 3.02
2391 2477 4.205588 GCTTTTTGTGTAAGTTTGGTACGC 59.794 41.667 0.00 0.00 33.48 4.42
2452 2540 2.643801 TGTATGGGGCATATGATGAGCA 59.356 45.455 6.97 0.00 0.00 4.26
2552 2642 2.481952 GTGACAATGTCTGCCTTGTCTC 59.518 50.000 14.97 8.69 44.83 3.36
2554 2644 3.578282 TGACAATGTCTGCCTTGTCTCTA 59.422 43.478 14.97 0.00 44.83 2.43
2555 2645 4.223700 TGACAATGTCTGCCTTGTCTCTAT 59.776 41.667 14.97 0.00 44.83 1.98
2556 2646 5.422012 TGACAATGTCTGCCTTGTCTCTATA 59.578 40.000 14.97 0.00 44.83 1.31
2557 2647 5.911752 ACAATGTCTGCCTTGTCTCTATAG 58.088 41.667 0.00 0.00 29.48 1.31
2558 2648 5.423610 ACAATGTCTGCCTTGTCTCTATAGT 59.576 40.000 0.00 0.00 29.48 2.12
2561 2651 4.116238 GTCTGCCTTGTCTCTATAGTTGC 58.884 47.826 0.00 0.00 0.00 4.17
2562 2652 3.119291 CTGCCTTGTCTCTATAGTTGCG 58.881 50.000 0.00 0.00 0.00 4.85
2563 2653 2.496070 TGCCTTGTCTCTATAGTTGCGT 59.504 45.455 0.00 0.00 0.00 5.24
2564 2654 2.860735 GCCTTGTCTCTATAGTTGCGTG 59.139 50.000 0.00 0.00 0.00 5.34
2565 2655 3.428999 GCCTTGTCTCTATAGTTGCGTGA 60.429 47.826 0.00 0.00 0.00 4.35
2566 2656 4.737946 GCCTTGTCTCTATAGTTGCGTGAT 60.738 45.833 0.00 0.00 0.00 3.06
2567 2657 5.352284 CCTTGTCTCTATAGTTGCGTGATT 58.648 41.667 0.00 0.00 0.00 2.57
2568 2658 5.233050 CCTTGTCTCTATAGTTGCGTGATTG 59.767 44.000 0.00 0.00 0.00 2.67
2569 2659 5.324784 TGTCTCTATAGTTGCGTGATTGT 57.675 39.130 0.00 0.00 0.00 2.71
2570 2660 5.720202 TGTCTCTATAGTTGCGTGATTGTT 58.280 37.500 0.00 0.00 0.00 2.83
2571 2661 5.576774 TGTCTCTATAGTTGCGTGATTGTTG 59.423 40.000 0.00 0.00 0.00 3.33
2572 2662 5.577164 GTCTCTATAGTTGCGTGATTGTTGT 59.423 40.000 0.00 0.00 0.00 3.32
2573 2663 6.090898 GTCTCTATAGTTGCGTGATTGTTGTT 59.909 38.462 0.00 0.00 0.00 2.83
2574 2664 6.090763 TCTCTATAGTTGCGTGATTGTTGTTG 59.909 38.462 0.00 0.00 0.00 3.33
2575 2665 4.829064 ATAGTTGCGTGATTGTTGTTGT 57.171 36.364 0.00 0.00 0.00 3.32
2576 2666 2.796304 AGTTGCGTGATTGTTGTTGTG 58.204 42.857 0.00 0.00 0.00 3.33
2577 2667 1.255084 GTTGCGTGATTGTTGTTGTGC 59.745 47.619 0.00 0.00 0.00 4.57
2623 2721 1.975407 GCATGTGGGTTGCTGAGCT 60.975 57.895 5.83 0.00 37.14 4.09
2686 2784 1.900245 TGCAAGCACACATCAGACAT 58.100 45.000 0.00 0.00 0.00 3.06
2687 2785 3.056588 TGCAAGCACACATCAGACATA 57.943 42.857 0.00 0.00 0.00 2.29
2725 2825 4.798433 CAGCCTAGGTTGCACACA 57.202 55.556 13.15 0.00 0.00 3.72
2738 2842 4.378770 GGTTGCACACATCAGATACACTTG 60.379 45.833 0.00 0.00 0.00 3.16
2779 2893 3.575630 CACAAAGCGCTCTACTAAGACA 58.424 45.455 12.06 0.00 0.00 3.41
2780 2894 3.610242 CACAAAGCGCTCTACTAAGACAG 59.390 47.826 12.06 0.00 0.00 3.51
2781 2895 3.256136 ACAAAGCGCTCTACTAAGACAGT 59.744 43.478 12.06 0.00 41.62 3.55
2782 2896 4.458295 ACAAAGCGCTCTACTAAGACAGTA 59.542 41.667 12.06 0.00 38.80 2.74
2803 2917 6.940298 CAGTAAGACTTTATTTGGTTCCCTGA 59.060 38.462 0.00 0.00 0.00 3.86
2808 2922 4.700213 ACTTTATTTGGTTCCCTGACATCG 59.300 41.667 0.00 0.00 0.00 3.84
2811 2925 3.773418 TTTGGTTCCCTGACATCGTAA 57.227 42.857 0.00 0.00 0.00 3.18
2842 2959 8.548877 AGTTATACCTGACAAATGTATTGGACT 58.451 33.333 6.12 0.00 0.00 3.85
2849 2966 3.255642 ACAAATGTATTGGACTGTGTGGC 59.744 43.478 0.00 0.00 0.00 5.01
2859 2976 0.466543 ACTGTGTGGCGTTGAAGGTA 59.533 50.000 0.00 0.00 0.00 3.08
2862 2979 2.671396 CTGTGTGGCGTTGAAGGTATAC 59.329 50.000 0.00 0.00 0.00 1.47
2863 2980 2.300723 TGTGTGGCGTTGAAGGTATACT 59.699 45.455 2.25 0.00 0.00 2.12
2864 2981 3.510753 TGTGTGGCGTTGAAGGTATACTA 59.489 43.478 2.25 0.00 0.00 1.82
2866 2983 4.565564 GTGTGGCGTTGAAGGTATACTAAG 59.434 45.833 2.25 0.00 0.00 2.18
2867 2984 4.221262 TGTGGCGTTGAAGGTATACTAAGT 59.779 41.667 2.25 0.00 0.00 2.24
2917 3077 1.100510 CTGGCAATGTCACCATCCAG 58.899 55.000 0.00 0.00 36.98 3.86
2928 3088 1.608590 CACCATCCAGTCCAACACAAC 59.391 52.381 0.00 0.00 0.00 3.32
2955 3115 3.810896 GCCGGTGCCGTCCAATTC 61.811 66.667 1.90 0.00 37.81 2.17
2982 3142 3.181446 TGATTGTGTTCATGGGTCACTCA 60.181 43.478 13.61 0.00 33.82 3.41
2995 3155 4.042062 TGGGTCACTCAATCTTCTTCACAT 59.958 41.667 0.00 0.00 0.00 3.21
3017 3181 3.689161 TCCATCACAGGCGACTATTTTTG 59.311 43.478 0.00 0.00 40.21 2.44
3068 3232 2.595124 ACAAAAGAAAACCCTTGCCG 57.405 45.000 0.00 0.00 0.00 5.69
3072 3236 0.755327 AAGAAAACCCTTGCCGCAGT 60.755 50.000 0.00 0.00 0.00 4.40
3073 3237 0.755327 AGAAAACCCTTGCCGCAGTT 60.755 50.000 0.00 0.00 0.00 3.16
3074 3238 0.318699 GAAAACCCTTGCCGCAGTTC 60.319 55.000 0.00 0.00 0.00 3.01
3076 3240 1.172812 AAACCCTTGCCGCAGTTCTC 61.173 55.000 0.00 0.00 0.00 2.87
3077 3241 3.121030 CCCTTGCCGCAGTTCTCG 61.121 66.667 0.00 0.00 0.00 4.04
3078 3242 2.048222 CCTTGCCGCAGTTCTCGA 60.048 61.111 0.00 0.00 0.00 4.04
3079 3243 2.097038 CCTTGCCGCAGTTCTCGAG 61.097 63.158 5.93 5.93 0.00 4.04
3081 3245 1.075425 CTTGCCGCAGTTCTCGAGAG 61.075 60.000 15.94 5.48 0.00 3.20
3085 3249 1.075425 CCGCAGTTCTCGAGAGCAAG 61.075 60.000 27.93 20.74 0.00 4.01
3102 3266 2.032681 GGGAGCAAGCGAGGTTGT 59.967 61.111 15.16 3.93 0.00 3.32
3108 3272 0.040067 GCAAGCGAGGTTGTCCAAAG 60.040 55.000 15.16 0.00 35.89 2.77
3110 3274 1.946768 CAAGCGAGGTTGTCCAAAGAA 59.053 47.619 6.84 0.00 35.89 2.52
3111 3275 2.554032 CAAGCGAGGTTGTCCAAAGAAT 59.446 45.455 6.84 0.00 35.89 2.40
3113 3277 4.222124 AGCGAGGTTGTCCAAAGAATAT 57.778 40.909 0.00 0.00 35.89 1.28
3143 3307 1.374252 GACCTGAATCACGTGCGGT 60.374 57.895 11.67 11.41 0.00 5.68
3145 3309 1.079819 CCTGAATCACGTGCGGTCT 60.080 57.895 11.67 0.00 0.00 3.85
3151 3315 0.109086 ATCACGTGCGGTCTCTTGAG 60.109 55.000 11.67 0.00 0.00 3.02
3152 3316 1.170290 TCACGTGCGGTCTCTTGAGA 61.170 55.000 11.67 0.00 0.00 3.27
3154 3318 0.171455 ACGTGCGGTCTCTTGAGATC 59.829 55.000 3.50 2.21 0.00 2.75
3155 3319 0.453793 CGTGCGGTCTCTTGAGATCT 59.546 55.000 8.96 0.00 0.00 2.75
3158 3322 3.330267 GTGCGGTCTCTTGAGATCTTTT 58.670 45.455 8.96 0.00 0.00 2.27
3163 3327 5.665459 CGGTCTCTTGAGATCTTTTATGGT 58.335 41.667 8.96 0.00 0.00 3.55
3197 3361 3.157087 ACATCGAAAATTGCTCCTTGGT 58.843 40.909 0.00 0.00 0.00 3.67
3204 3368 2.215942 ATTGCTCCTTGGTTGGTACC 57.784 50.000 4.43 4.43 45.26 3.34
3212 3376 4.705746 GGTTGGTACCACGATGCA 57.294 55.556 16.04 0.00 44.36 3.96
3213 3377 2.935505 GGTTGGTACCACGATGCAA 58.064 52.632 16.04 0.00 44.36 4.08
3214 3378 1.240256 GGTTGGTACCACGATGCAAA 58.760 50.000 16.04 0.00 44.36 3.68
3215 3379 1.816224 GGTTGGTACCACGATGCAAAT 59.184 47.619 16.04 0.00 44.36 2.32
3216 3380 2.159435 GGTTGGTACCACGATGCAAATC 60.159 50.000 16.04 0.00 44.36 2.17
3217 3381 1.745232 TGGTACCACGATGCAAATCC 58.255 50.000 11.60 0.00 0.00 3.01
3218 3382 0.655733 GGTACCACGATGCAAATCCG 59.344 55.000 7.15 0.00 0.00 4.18
3219 3383 1.365699 GTACCACGATGCAAATCCGT 58.634 50.000 0.00 0.00 36.95 4.69
3220 3384 2.542597 GTACCACGATGCAAATCCGTA 58.457 47.619 0.00 0.00 34.91 4.02
3221 3385 1.651987 ACCACGATGCAAATCCGTAG 58.348 50.000 0.00 0.00 34.91 3.51
3222 3386 1.066430 ACCACGATGCAAATCCGTAGT 60.066 47.619 0.00 0.00 34.91 2.73
3223 3387 1.327460 CCACGATGCAAATCCGTAGTG 59.673 52.381 0.00 0.00 34.91 2.74
3224 3388 2.267426 CACGATGCAAATCCGTAGTGA 58.733 47.619 0.00 0.00 34.91 3.41
3225 3389 2.029244 CACGATGCAAATCCGTAGTGAC 59.971 50.000 0.00 0.00 34.91 3.67
3226 3390 1.593006 CGATGCAAATCCGTAGTGACC 59.407 52.381 0.00 0.00 0.00 4.02
3227 3391 2.627945 GATGCAAATCCGTAGTGACCA 58.372 47.619 0.00 0.00 0.00 4.02
3228 3392 2.779755 TGCAAATCCGTAGTGACCAT 57.220 45.000 0.00 0.00 0.00 3.55
3229 3393 2.355197 TGCAAATCCGTAGTGACCATG 58.645 47.619 0.00 0.00 0.00 3.66
3230 3394 2.027653 TGCAAATCCGTAGTGACCATGA 60.028 45.455 0.00 0.00 0.00 3.07
3231 3395 2.351726 GCAAATCCGTAGTGACCATGAC 59.648 50.000 0.00 0.00 0.00 3.06
3232 3396 3.595173 CAAATCCGTAGTGACCATGACA 58.405 45.455 0.00 0.00 0.00 3.58
3233 3397 3.973206 AATCCGTAGTGACCATGACAA 57.027 42.857 0.00 0.00 0.00 3.18
3234 3398 3.973206 ATCCGTAGTGACCATGACAAA 57.027 42.857 0.00 0.00 0.00 2.83
3235 3399 3.755112 TCCGTAGTGACCATGACAAAA 57.245 42.857 0.00 0.00 0.00 2.44
3236 3400 4.074627 TCCGTAGTGACCATGACAAAAA 57.925 40.909 0.00 0.00 0.00 1.94
3255 3419 3.443588 ACCGCTGCCTGGTTTTTC 58.556 55.556 0.00 0.00 35.82 2.29
3256 3420 1.454847 ACCGCTGCCTGGTTTTTCA 60.455 52.632 0.00 0.00 35.82 2.69
3257 3421 1.040339 ACCGCTGCCTGGTTTTTCAA 61.040 50.000 0.00 0.00 35.82 2.69
3258 3422 0.318955 CCGCTGCCTGGTTTTTCAAG 60.319 55.000 0.00 0.00 0.00 3.02
3259 3423 0.385390 CGCTGCCTGGTTTTTCAAGT 59.615 50.000 0.00 0.00 0.00 3.16
3260 3424 1.202405 CGCTGCCTGGTTTTTCAAGTT 60.202 47.619 0.00 0.00 0.00 2.66
3261 3425 2.204237 GCTGCCTGGTTTTTCAAGTTG 58.796 47.619 0.00 0.00 0.00 3.16
3262 3426 2.159114 GCTGCCTGGTTTTTCAAGTTGA 60.159 45.455 0.08 0.08 0.00 3.18
3263 3427 3.678529 GCTGCCTGGTTTTTCAAGTTGAA 60.679 43.478 14.35 14.35 34.03 2.69
3264 3428 3.855858 TGCCTGGTTTTTCAAGTTGAAC 58.144 40.909 17.85 7.66 35.89 3.18
3265 3429 2.857748 GCCTGGTTTTTCAAGTTGAACG 59.142 45.455 17.85 3.99 35.89 3.95
3266 3430 2.857748 CCTGGTTTTTCAAGTTGAACGC 59.142 45.455 17.85 10.47 35.89 4.84
3267 3431 3.506810 CTGGTTTTTCAAGTTGAACGCA 58.493 40.909 17.85 0.95 35.89 5.24
3268 3432 4.111916 CTGGTTTTTCAAGTTGAACGCAT 58.888 39.130 17.85 0.00 35.89 4.73
3269 3433 5.250235 TGGTTTTTCAAGTTGAACGCATA 57.750 34.783 17.85 0.18 35.89 3.14
3270 3434 5.038033 TGGTTTTTCAAGTTGAACGCATAC 58.962 37.500 17.85 8.85 35.89 2.39
3271 3435 5.038033 GGTTTTTCAAGTTGAACGCATACA 58.962 37.500 17.85 0.00 35.89 2.29
3272 3436 5.173131 GGTTTTTCAAGTTGAACGCATACAG 59.827 40.000 17.85 0.00 35.89 2.74
3273 3437 4.481930 TTTCAAGTTGAACGCATACAGG 57.518 40.909 17.85 0.00 35.89 4.00
3274 3438 3.394674 TCAAGTTGAACGCATACAGGA 57.605 42.857 2.20 0.00 0.00 3.86
3275 3439 3.064207 TCAAGTTGAACGCATACAGGAC 58.936 45.455 2.20 0.00 0.00 3.85
3276 3440 2.094762 AGTTGAACGCATACAGGACC 57.905 50.000 0.00 0.00 0.00 4.46
3277 3441 1.346395 AGTTGAACGCATACAGGACCA 59.654 47.619 0.00 0.00 0.00 4.02
3278 3442 1.463444 GTTGAACGCATACAGGACCAC 59.537 52.381 0.00 0.00 0.00 4.16
3279 3443 0.389296 TGAACGCATACAGGACCACG 60.389 55.000 0.00 0.00 0.00 4.94
3280 3444 1.079405 AACGCATACAGGACCACGG 60.079 57.895 0.00 0.00 0.00 4.94
3281 3445 2.890474 CGCATACAGGACCACGGC 60.890 66.667 0.00 0.00 0.00 5.68
3282 3446 2.584608 GCATACAGGACCACGGCT 59.415 61.111 0.00 0.00 0.00 5.52
3283 3447 1.815421 GCATACAGGACCACGGCTG 60.815 63.158 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.359975 CTGTTCTTGGTCCGGCCC 60.360 66.667 11.72 3.08 36.04 5.80
30 31 2.200170 GACACCGGCAACCAAGATGC 62.200 60.000 0.00 0.00 43.08 3.91
112 113 2.836360 CCTGCATGGGATGGCCAC 60.836 66.667 8.16 1.35 35.15 5.01
118 120 1.684248 GCTCAAGAACCTGCATGGGAT 60.684 52.381 0.00 0.00 41.11 3.85
155 157 4.202367 ACCCAAGAAAACACAAACAAACCA 60.202 37.500 0.00 0.00 0.00 3.67
198 201 2.358125 CGCACACCAACATCCCGA 60.358 61.111 0.00 0.00 0.00 5.14
199 202 3.430862 CCGCACACCAACATCCCG 61.431 66.667 0.00 0.00 0.00 5.14
200 203 2.282180 ACCGCACACCAACATCCC 60.282 61.111 0.00 0.00 0.00 3.85
222 228 1.237285 CCTCAAACCCCAGCTGAACG 61.237 60.000 17.39 4.07 0.00 3.95
261 267 5.360649 AGCCTAAGTGTAGGGATTTCTTC 57.639 43.478 2.10 0.00 46.42 2.87
290 296 2.740904 CGGGGAAGAAGTAATCCGGAAC 60.741 54.545 9.01 2.33 36.54 3.62
293 299 1.117150 TCGGGGAAGAAGTAATCCGG 58.883 55.000 0.00 0.00 38.21 5.14
327 333 6.936900 AGCGTAACAGCCTATGATAATCAAAT 59.063 34.615 0.00 0.00 38.01 2.32
348 354 3.130693 GGACTCTAATCACCTAACAGCGT 59.869 47.826 0.00 0.00 0.00 5.07
382 388 4.021719 CAGTTCAGTTGAAATGGCCTGAAT 60.022 41.667 12.97 0.00 43.83 2.57
385 391 3.293311 CAGTTCAGTTGAAATGGCCTG 57.707 47.619 12.97 5.12 43.83 4.85
455 463 1.786937 TTCCACAAAACACCCAGCAT 58.213 45.000 0.00 0.00 0.00 3.79
534 542 2.414994 ACTAGTACTGCCGCTACTCA 57.585 50.000 5.39 0.00 0.00 3.41
652 732 4.563786 GCAGAAGTTTCCTAGTTGCTACCT 60.564 45.833 0.00 0.00 0.00 3.08
659 739 3.139077 CCAACGCAGAAGTTTCCTAGTT 58.861 45.455 0.00 0.00 30.96 2.24
661 741 2.996621 CTCCAACGCAGAAGTTTCCTAG 59.003 50.000 0.00 0.00 30.96 3.02
688 768 3.065925 GCCATGCAGTTTAGATCTGAACC 59.934 47.826 22.78 11.80 35.20 3.62
708 788 3.815401 ACAGTAGTCACATGAAACAAGCC 59.185 43.478 0.00 0.00 0.00 4.35
889 969 0.946221 CTCGACACTGAACACCCAGC 60.946 60.000 0.00 0.00 37.68 4.85
910 990 7.886629 AAGGTCAACAACATATAAGCATCAT 57.113 32.000 0.00 0.00 0.00 2.45
915 995 8.028938 ACATGAAAAGGTCAACAACATATAAGC 58.971 33.333 0.00 0.00 40.50 3.09
921 1001 6.068010 TCCTACATGAAAAGGTCAACAACAT 58.932 36.000 0.00 0.00 40.50 2.71
1142 1225 4.799949 CGTTATTGGTGGCATCATTTTCAG 59.200 41.667 0.00 0.00 0.00 3.02
1162 1245 0.035317 TGCTCATCACTGGCTTCGTT 59.965 50.000 0.00 0.00 0.00 3.85
1171 1254 7.063934 TCTGATCATCTTTATGCTCATCACT 57.936 36.000 0.00 0.00 37.55 3.41
1202 1285 2.398554 CCCAGTTTGATGACGCCCG 61.399 63.158 0.00 0.00 0.00 6.13
1473 1556 3.339141 GTCACCATGGAAACTCTTCTCC 58.661 50.000 21.47 0.00 0.00 3.71
1528 1611 1.009900 GCTCATCTTGCTGCGATGC 60.010 57.895 11.27 0.00 38.47 3.91
1544 1627 1.866483 TTGGGCATGATGGGTCAGCT 61.866 55.000 0.00 0.00 37.87 4.24
1655 1738 1.270907 GCCTCCAGAACTCTTCTCCA 58.729 55.000 0.00 0.00 38.11 3.86
1674 1757 2.658802 CACAGAACTCGACACATTCTCG 59.341 50.000 0.00 0.00 30.17 4.04
1686 1769 2.012673 GCATCATGGTCCACAGAACTC 58.987 52.381 0.00 0.00 0.00 3.01
1803 1886 0.613260 TGGTTCCATTCACTCGAGGG 59.387 55.000 18.41 14.07 0.00 4.30
1807 1890 2.086869 AGCATTGGTTCCATTCACTCG 58.913 47.619 0.00 0.00 0.00 4.18
1842 1925 6.985117 TGATGCATTAGTTTTTGAAGAAGCT 58.015 32.000 0.00 0.00 0.00 3.74
1852 1935 3.632145 GGGTCGGATGATGCATTAGTTTT 59.368 43.478 0.00 0.00 0.00 2.43
1853 1936 3.214328 GGGTCGGATGATGCATTAGTTT 58.786 45.455 0.00 0.00 0.00 2.66
1854 1937 2.172505 TGGGTCGGATGATGCATTAGTT 59.827 45.455 0.00 0.00 0.00 2.24
1866 1949 0.327924 TGCTCATGTTTGGGTCGGAT 59.672 50.000 0.00 0.00 0.00 4.18
1870 1953 1.168714 GGAGTGCTCATGTTTGGGTC 58.831 55.000 1.41 0.00 0.00 4.46
1902 1985 4.323104 GGAGTTGGATCAGTCTTGCTTACT 60.323 45.833 0.00 0.00 0.00 2.24
1904 1987 3.582647 TGGAGTTGGATCAGTCTTGCTTA 59.417 43.478 0.00 0.00 0.00 3.09
1943 2026 0.181114 TGTCCCTGATACAGCATGGC 59.819 55.000 0.00 0.00 43.62 4.40
1952 2035 6.443849 AGAGGTTGAATTACTTGTCCCTGATA 59.556 38.462 0.00 0.00 0.00 2.15
2004 2087 0.790207 TCGACGCTGCTGTTGAATTC 59.210 50.000 10.64 0.00 29.28 2.17
2033 2116 3.643792 AGTCAGGTCAGCTAAGAGTTGTT 59.356 43.478 0.00 0.00 0.00 2.83
2055 2138 2.303890 TGGAGAATTCAGCTCAGCAGAA 59.696 45.455 6.98 6.98 38.33 3.02
2058 2141 1.339438 GGTGGAGAATTCAGCTCAGCA 60.339 52.381 8.44 0.00 39.56 4.41
2061 2144 1.266178 TCGGTGGAGAATTCAGCTCA 58.734 50.000 8.44 0.00 40.83 4.26
2097 2183 3.891366 CCTTTTGGTCATCAGTTGAACCT 59.109 43.478 4.99 0.00 41.74 3.50
2111 2197 0.482446 TCTGGATGTGGCCTTTTGGT 59.518 50.000 3.32 0.00 42.99 3.67
2136 2222 1.068816 GTGTTGTTACCGGCATTGTCC 60.069 52.381 0.00 0.00 0.00 4.02
2196 2282 3.921767 CTTCTGAGCGTCGCTGCCA 62.922 63.158 27.16 16.32 39.88 4.92
2200 2286 1.214062 CTTCCTTCTGAGCGTCGCT 59.786 57.895 21.92 21.92 43.88 4.93
2214 2300 0.313043 TCGACACGTCTTGGTCTTCC 59.687 55.000 2.74 0.00 31.88 3.46
2312 2398 1.226030 ACAAACTTACAGGTCGCGCC 61.226 55.000 0.00 6.31 37.58 6.53
2315 2401 2.991866 GTCCTACAAACTTACAGGTCGC 59.008 50.000 0.00 0.00 0.00 5.19
2316 2402 4.516365 AGTCCTACAAACTTACAGGTCG 57.484 45.455 0.00 0.00 0.00 4.79
2391 2477 1.067516 CAAACACAAAGCAGGTCCCTG 59.932 52.381 9.04 9.04 46.15 4.45
2452 2540 4.336713 GTCTCTTCCAACACAAGCTTCTTT 59.663 41.667 0.00 0.00 0.00 2.52
2552 2642 5.790003 CACAACAACAATCACGCAACTATAG 59.210 40.000 0.00 0.00 0.00 1.31
2554 2644 4.536065 CACAACAACAATCACGCAACTAT 58.464 39.130 0.00 0.00 0.00 2.12
2555 2645 3.790456 GCACAACAACAATCACGCAACTA 60.790 43.478 0.00 0.00 0.00 2.24
2556 2646 2.796304 CACAACAACAATCACGCAACT 58.204 42.857 0.00 0.00 0.00 3.16
2557 2647 1.255084 GCACAACAACAATCACGCAAC 59.745 47.619 0.00 0.00 0.00 4.17
2558 2648 1.133982 AGCACAACAACAATCACGCAA 59.866 42.857 0.00 0.00 0.00 4.85
2561 2651 1.518102 GCAAGCACAACAACAATCACG 59.482 47.619 0.00 0.00 0.00 4.35
2562 2652 2.813061 AGCAAGCACAACAACAATCAC 58.187 42.857 0.00 0.00 0.00 3.06
2563 2653 3.188492 CAAGCAAGCACAACAACAATCA 58.812 40.909 0.00 0.00 0.00 2.57
2564 2654 2.033492 GCAAGCAAGCACAACAACAATC 60.033 45.455 0.00 0.00 0.00 2.67
2565 2655 1.935199 GCAAGCAAGCACAACAACAAT 59.065 42.857 0.00 0.00 0.00 2.71
2566 2656 1.337541 TGCAAGCAAGCACAACAACAA 60.338 42.857 0.00 0.00 40.11 2.83
2567 2657 0.245813 TGCAAGCAAGCACAACAACA 59.754 45.000 0.00 0.00 40.11 3.33
2568 2658 3.047752 TGCAAGCAAGCACAACAAC 57.952 47.368 0.00 0.00 40.11 3.32
2611 2709 4.448732 CACAAATAAAAAGCTCAGCAACCC 59.551 41.667 0.00 0.00 0.00 4.11
2623 2721 5.105752 ACGCACAAGCTTCACAAATAAAAA 58.894 33.333 0.00 0.00 39.10 1.94
2678 2776 6.599244 ACATGACGGAATGTTTTATGTCTGAT 59.401 34.615 0.00 0.00 37.50 2.90
2686 2784 3.057876 GCACCACATGACGGAATGTTTTA 60.058 43.478 12.07 0.00 38.75 1.52
2687 2785 2.288152 GCACCACATGACGGAATGTTTT 60.288 45.455 12.07 0.00 38.75 2.43
2720 2820 3.935203 GGTCCAAGTGTATCTGATGTGTG 59.065 47.826 0.00 0.00 0.00 3.82
2722 2822 4.186926 CAGGTCCAAGTGTATCTGATGTG 58.813 47.826 0.00 0.00 0.00 3.21
2724 2824 4.478206 ACAGGTCCAAGTGTATCTGATG 57.522 45.455 0.00 0.00 0.00 3.07
2725 2825 5.958380 TCTTACAGGTCCAAGTGTATCTGAT 59.042 40.000 0.00 0.00 0.00 2.90
2738 2842 3.437049 GTGCTGTGATTTCTTACAGGTCC 59.563 47.826 0.00 0.00 43.41 4.46
2832 2949 0.394938 ACGCCACACAGTCCAATACA 59.605 50.000 0.00 0.00 0.00 2.29
2842 2959 2.300723 AGTATACCTTCAACGCCACACA 59.699 45.455 0.00 0.00 0.00 3.72
2849 2966 8.618677 TCACTGATACTTAGTATACCTTCAACG 58.381 37.037 4.71 0.00 0.00 4.10
2859 2976 6.941802 CGTACACGTCACTGATACTTAGTAT 58.058 40.000 4.35 4.35 34.11 2.12
2917 3077 3.550030 GCACACCATAAGTTGTGTTGGAC 60.550 47.826 2.40 0.00 42.82 4.02
2928 3088 2.406616 GGCACCGGCACACCATAAG 61.407 63.158 0.00 0.00 43.71 1.73
2955 3115 2.833338 ACCCATGAACACAATCAATGGG 59.167 45.455 15.81 15.81 44.77 4.00
2982 3142 5.191426 CCTGTGATGGATGTGAAGAAGATT 58.809 41.667 0.00 0.00 0.00 2.40
2995 3155 3.627395 AAAATAGTCGCCTGTGATGGA 57.373 42.857 0.00 0.00 0.00 3.41
3035 3199 3.950397 TCTTTTGTACGATGGCAGGATT 58.050 40.909 0.00 0.00 0.00 3.01
3039 3203 4.226761 GGTTTTCTTTTGTACGATGGCAG 58.773 43.478 0.00 0.00 0.00 4.85
3040 3204 3.004944 GGGTTTTCTTTTGTACGATGGCA 59.995 43.478 0.00 0.00 0.00 4.92
3068 3232 0.739112 CCCTTGCTCTCGAGAACTGC 60.739 60.000 17.36 16.62 0.00 4.40
3072 3236 0.900182 TGCTCCCTTGCTCTCGAGAA 60.900 55.000 17.36 0.00 0.00 2.87
3073 3237 0.900182 TTGCTCCCTTGCTCTCGAGA 60.900 55.000 15.70 15.70 0.00 4.04
3074 3238 0.459934 CTTGCTCCCTTGCTCTCGAG 60.460 60.000 5.93 5.93 0.00 4.04
3076 3240 2.105466 GCTTGCTCCCTTGCTCTCG 61.105 63.158 0.00 0.00 0.00 4.04
3077 3241 2.105466 CGCTTGCTCCCTTGCTCTC 61.105 63.158 0.00 0.00 0.00 3.20
3078 3242 2.046507 CGCTTGCTCCCTTGCTCT 60.047 61.111 0.00 0.00 0.00 4.09
3079 3243 2.046892 TCGCTTGCTCCCTTGCTC 60.047 61.111 0.00 0.00 0.00 4.26
3081 3245 3.130160 CCTCGCTTGCTCCCTTGC 61.130 66.667 0.00 0.00 0.00 4.01
3085 3249 2.032681 ACAACCTCGCTTGCTCCC 59.967 61.111 0.00 0.00 0.00 4.30
3102 3266 5.188163 TCGGGTGTACAAGATATTCTTTGGA 59.812 40.000 0.00 0.00 33.78 3.53
3108 3272 4.098960 TCAGGTCGGGTGTACAAGATATTC 59.901 45.833 0.00 0.00 0.00 1.75
3110 3274 3.638860 TCAGGTCGGGTGTACAAGATAT 58.361 45.455 0.00 0.00 0.00 1.63
3111 3275 3.090210 TCAGGTCGGGTGTACAAGATA 57.910 47.619 0.00 0.00 0.00 1.98
3113 3277 1.707106 TTCAGGTCGGGTGTACAAGA 58.293 50.000 0.00 0.00 0.00 3.02
3143 3307 7.911651 ACTTGACCATAAAAGATCTCAAGAGA 58.088 34.615 18.57 1.74 37.77 3.10
3145 3309 7.911651 AGACTTGACCATAAAAGATCTCAAGA 58.088 34.615 18.57 0.00 37.77 3.02
3151 3315 8.447053 GTTCAGAAGACTTGACCATAAAAGATC 58.553 37.037 0.00 0.00 0.00 2.75
3152 3316 7.939039 TGTTCAGAAGACTTGACCATAAAAGAT 59.061 33.333 0.00 0.00 0.00 2.40
3154 3318 7.496529 TGTTCAGAAGACTTGACCATAAAAG 57.503 36.000 0.00 0.00 0.00 2.27
3155 3319 7.095229 CGATGTTCAGAAGACTTGACCATAAAA 60.095 37.037 0.00 0.00 0.00 1.52
3158 3322 5.185056 TCGATGTTCAGAAGACTTGACCATA 59.815 40.000 0.00 0.00 0.00 2.74
3163 3327 7.355017 CAATTTTCGATGTTCAGAAGACTTGA 58.645 34.615 0.00 0.00 0.00 3.02
3197 3361 2.088423 GGATTTGCATCGTGGTACCAA 58.912 47.619 18.31 1.51 0.00 3.67
3204 3368 2.029244 GTCACTACGGATTTGCATCGTG 59.971 50.000 12.79 2.26 38.19 4.35
3205 3369 2.268298 GTCACTACGGATTTGCATCGT 58.732 47.619 9.22 9.22 40.40 3.73
3206 3370 1.593006 GGTCACTACGGATTTGCATCG 59.407 52.381 0.00 0.00 0.00 3.84
3207 3371 2.627945 TGGTCACTACGGATTTGCATC 58.372 47.619 0.00 0.00 0.00 3.91
3208 3372 2.779755 TGGTCACTACGGATTTGCAT 57.220 45.000 0.00 0.00 0.00 3.96
3209 3373 2.027653 TCATGGTCACTACGGATTTGCA 60.028 45.455 0.00 0.00 0.00 4.08
3210 3374 2.351726 GTCATGGTCACTACGGATTTGC 59.648 50.000 0.00 0.00 0.00 3.68
3211 3375 3.595173 TGTCATGGTCACTACGGATTTG 58.405 45.455 0.00 0.00 0.00 2.32
3212 3376 3.973206 TGTCATGGTCACTACGGATTT 57.027 42.857 0.00 0.00 0.00 2.17
3213 3377 3.973206 TTGTCATGGTCACTACGGATT 57.027 42.857 0.00 0.00 0.00 3.01
3214 3378 3.973206 TTTGTCATGGTCACTACGGAT 57.027 42.857 0.00 0.00 0.00 4.18
3215 3379 3.755112 TTTTGTCATGGTCACTACGGA 57.245 42.857 0.00 0.00 0.00 4.69
3234 3398 3.948702 AACCAGGCAGCGGTTTTT 58.051 50.000 0.00 0.00 44.46 1.94
3238 3402 1.040339 TTGAAAAACCAGGCAGCGGT 61.040 50.000 0.00 0.00 38.85 5.68
3239 3403 0.318955 CTTGAAAAACCAGGCAGCGG 60.319 55.000 0.00 0.00 0.00 5.52
3240 3404 0.385390 ACTTGAAAAACCAGGCAGCG 59.615 50.000 0.00 0.00 0.00 5.18
3241 3405 2.159114 TCAACTTGAAAAACCAGGCAGC 60.159 45.455 0.00 0.00 0.00 5.25
3242 3406 3.799281 TCAACTTGAAAAACCAGGCAG 57.201 42.857 0.00 0.00 0.00 4.85
3243 3407 3.674682 CGTTCAACTTGAAAAACCAGGCA 60.675 43.478 5.76 0.00 38.22 4.75
3244 3408 2.857748 CGTTCAACTTGAAAAACCAGGC 59.142 45.455 5.76 0.00 38.22 4.85
3245 3409 2.857748 GCGTTCAACTTGAAAAACCAGG 59.142 45.455 5.76 0.00 38.22 4.45
3246 3410 3.506810 TGCGTTCAACTTGAAAAACCAG 58.493 40.909 5.76 0.00 38.22 4.00
3247 3411 3.577649 TGCGTTCAACTTGAAAAACCA 57.422 38.095 5.76 0.00 38.22 3.67
3248 3412 5.038033 TGTATGCGTTCAACTTGAAAAACC 58.962 37.500 5.76 0.00 38.22 3.27
3249 3413 5.173131 CCTGTATGCGTTCAACTTGAAAAAC 59.827 40.000 5.76 0.24 38.22 2.43
3250 3414 5.066634 TCCTGTATGCGTTCAACTTGAAAAA 59.933 36.000 5.76 0.00 38.22 1.94
3251 3415 4.576873 TCCTGTATGCGTTCAACTTGAAAA 59.423 37.500 5.76 0.00 38.22 2.29
3252 3416 4.024387 GTCCTGTATGCGTTCAACTTGAAA 60.024 41.667 5.76 0.00 38.22 2.69
3253 3417 3.496884 GTCCTGTATGCGTTCAACTTGAA 59.503 43.478 0.00 0.00 33.32 2.69
3254 3418 3.064207 GTCCTGTATGCGTTCAACTTGA 58.936 45.455 0.00 0.00 0.00 3.02
3255 3419 2.159627 GGTCCTGTATGCGTTCAACTTG 59.840 50.000 0.00 0.00 0.00 3.16
3256 3420 2.224426 TGGTCCTGTATGCGTTCAACTT 60.224 45.455 0.00 0.00 0.00 2.66
3257 3421 1.346395 TGGTCCTGTATGCGTTCAACT 59.654 47.619 0.00 0.00 0.00 3.16
3258 3422 1.463444 GTGGTCCTGTATGCGTTCAAC 59.537 52.381 0.00 0.00 0.00 3.18
3259 3423 1.803334 GTGGTCCTGTATGCGTTCAA 58.197 50.000 0.00 0.00 0.00 2.69
3260 3424 0.389296 CGTGGTCCTGTATGCGTTCA 60.389 55.000 0.00 0.00 0.00 3.18
3261 3425 1.082117 CCGTGGTCCTGTATGCGTTC 61.082 60.000 0.00 0.00 0.00 3.95
3262 3426 1.079405 CCGTGGTCCTGTATGCGTT 60.079 57.895 0.00 0.00 0.00 4.84
3263 3427 2.577059 CCGTGGTCCTGTATGCGT 59.423 61.111 0.00 0.00 0.00 5.24
3264 3428 2.890474 GCCGTGGTCCTGTATGCG 60.890 66.667 0.00 0.00 0.00 4.73
3265 3429 1.815421 CAGCCGTGGTCCTGTATGC 60.815 63.158 0.00 0.00 0.00 3.14
3266 3430 4.521075 CAGCCGTGGTCCTGTATG 57.479 61.111 0.00 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.